AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005862.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005862.01.T01 MTR_1g108510 92.544 228 17 0 1 228 1 228 2.84e-161 445
MsG0180005862.01.T01 MTR_3g030770 92.105 228 18 0 1 228 1 228 3.58e-159 439
MsG0180005862.01.T01 MTR_2g093190 89.035 228 25 0 1 228 1 228 1.42e-153 426
MsG0180005862.01.T01 MTR_1g108580 85.965 228 32 0 1 228 1 228 1.01e-148 413
MsG0180005862.01.T01 MTR_1g105920 77.376 221 40 2 1 213 1 219 2.91e-120 342
MsG0180005862.01.T01 MTR_8g043650 74.043 235 43 3 1 227 1 225 5.78e-118 336
MsG0180005862.01.T01 MTR_1g105910 71.489 235 49 3 1 227 1 225 1.88e-115 329
MsG0180005862.01.T01 MTR_2g030740 74.208 221 47 2 1 213 1 219 1.25e-114 327
MsG0180005862.01.T01 MTR_1g012570 72.851 221 50 2 1 213 1 219 1.30e-112 322
MsG0180005862.01.T01 MTR_3g052920 71.946 221 52 2 1 213 1 219 3.67e-111 318
MsG0180005862.01.T01 MTR_0121s0080 68.936 235 55 3 1 227 1 225 4.57e-110 316
MsG0180005862.01.T01 MTR_1g075600 64.681 235 65 3 1 227 1 225 7.24e-102 295
MsG0180005862.01.T01 MTR_1g077360 63.404 235 68 3 1 227 1 225 8.40e-101 292
MsG0180005862.01.T01 MTR_3g052870 68.778 221 40 4 1 213 1 200 3.72e-98 285
MsG0180005862.01.T01 MTR_1g105905 66.972 218 54 3 18 227 1 208 4.16e-98 285
MsG0180005862.01.T01 MTR_5g053390 62.979 235 69 4 1 227 1 225 9.46e-97 282
MsG0180005862.01.T01 MTR_5g045560 62.553 235 70 3 1 227 1 225 2.40e-96 281
MsG0180005862.01.T01 MTR_2g085280 60.426 235 75 3 1 227 1 225 8.11e-95 277
MsG0180005862.01.T01 MTR_5g055100 60.851 235 74 3 1 227 1 225 2.32e-94 276
MsG0180005862.01.T01 MTR_2g085250 60.426 235 75 3 1 227 1 225 3.43e-94 276
MsG0180005862.01.T01 MTR_1g106070 74.176 182 39 1 1 174 1 182 1.18e-93 272
MsG0180005862.01.T01 MTR_7g062350 62.443 221 64 4 16 227 27 237 2.33e-86 256
MsG0180005862.01.T01 MTR_0121s0100 84.848 132 20 0 1 132 1 132 1.43e-77 229
MsG0180005862.01.T01 MTR_3g030780 71.212 132 38 0 1 132 1 132 2.33e-64 196
MsG0180005862.01.T01 MTR_3g080940 53.143 175 80 1 9 183 9 181 2.66e-61 191
MsG0180005862.01.T01 MTR_1g075570 57.303 178 54 2 18 187 1 164 5.15e-55 173
MsG0180005862.01.T01 MTR_8g086290 43.030 165 84 2 5 166 8 165 3.16e-40 136
MsG0180005862.01.T01 MTR_3g067910 61.765 102 39 0 21 122 2 103 4.47e-40 134
MsG0180005862.01.T01 MTR_2g105290 39.394 165 90 2 5 166 8 165 7.00e-36 125
MsG0180005862.01.T01 MTR_1g108500 55.752 113 27 2 8 118 94 185 2.80e-30 114
MsG0180005862.01.T01 MTR_7g028448 41.176 170 88 3 5 174 8 165 3.57e-30 110
MsG0180005862.01.T01 MTR_4g036915 41.176 170 88 3 5 174 8 165 3.57e-30 110
MsG0180005862.01.T01 MTR_4g127140 37.714 175 89 4 5 166 8 175 6.32e-26 99.8
MsG0180005862.01.T01 MTR_3g067875 78.571 56 12 0 18 73 1 56 1.26e-25 95.5
MsG0180005862.01.T01 MTR_3g067915 48.936 94 48 0 33 126 3 96 2.07e-24 93.2
MsG0180005862.01.T01 MTR_1g063160 45.536 112 56 3 9 118 2 110 1.55e-23 93.6
MsG0180005862.01.T01 MTR_8g079502 56.522 69 30 0 9 77 2 70 1.08e-22 91.3
MsG0180005862.01.T01 MTR_1g054265 51.948 77 37 0 9 85 2 78 1.09e-22 90.9
MsG0180005862.01.T01 MTR_1g047550 56.522 69 30 0 9 77 2 70 1.54e-22 90.9
MsG0180005862.01.T01 MTR_4g131030 40.517 116 54 3 9 109 2 117 1.73e-22 91.7
MsG0180005862.01.T01 MTR_4g094638 43.396 106 59 1 9 113 2 107 8.84e-22 89.0
MsG0180005862.01.T01 MTR_8g051580 39.683 126 71 2 9 131 2 125 1.67e-21 88.2
MsG0180005862.01.T01 MTR_3g067870 63.934 61 22 0 16 76 83 143 1.39e-20 85.1
MsG0180005862.01.T01 MTR_8g046350 37.692 130 73 3 9 135 2 126 1.49e-20 85.1
MsG0180005862.01.T01 MTR_4g094632 38.679 106 63 1 9 114 2 105 3.45e-20 84.0
MsG0180005862.01.T01 MTR_5g066180 34.591 159 79 5 9 164 2 138 5.07e-20 85.5
MsG0180005862.01.T01 MTR_3g005530 51.471 68 33 0 9 76 2 69 7.09e-20 84.7
MsG0180005862.01.T01 MTR_8g033220 28.384 229 124 8 10 217 3 212 6.05e-19 82.4
MsG0180005862.01.T01 MTR_4g102530 52.239 67 32 0 10 76 3 69 6.43e-19 82.0
MsG0180005862.01.T01 MTR_3g102570 44.118 102 54 3 9 109 2 101 6.79e-19 84.0
MsG0180005862.01.T01 MTR_8g033220 28.384 229 124 8 10 217 3 212 7.25e-19 82.4
MsG0180005862.01.T01 MTR_3g452380 44.048 84 47 0 3 86 11 94 1.03e-18 82.0
MsG0180005862.01.T01 MTR_4g093970 56.061 66 29 0 10 75 29 94 1.22e-18 82.0
MsG0180005862.01.T01 MTR_1g053070 46.914 81 43 0 9 89 2 82 1.74e-18 81.6
MsG0180005862.01.T01 MTR_8g033270 38.679 106 63 1 9 112 2 107 1.80e-18 81.6
MsG0180005862.01.T01 MTR_8g022970 33.333 153 99 2 8 159 17 167 3.28e-18 79.7
MsG0180005862.01.T01 MTR_1g101970 50.000 68 34 0 9 76 2 69 5.63e-18 79.0
MsG0180005862.01.T01 MTR_4g109830 47.887 71 34 2 7 76 2 70 1.10e-17 79.3
MsG0180005862.01.T01 MTR_5g032520 47.059 68 36 0 9 76 2 69 1.21e-17 79.0
MsG0180005862.01.T01 MTR_5g032150 32.258 155 74 6 9 156 2 132 1.24e-17 79.0
MsG0180005862.01.T01 MTR_2g009890 47.059 68 36 0 9 76 2 69 1.38e-17 79.7
MsG0180005862.01.T01 MTR_2g017865 39.806 103 61 1 9 111 17 118 1.47e-17 79.3
MsG0180005862.01.T01 MTR_0003s0590 50.000 68 34 0 9 76 2 69 1.61e-17 79.3
MsG0180005862.01.T01 MTR_8g087860 48.529 68 35 0 9 76 18 85 1.86e-17 79.0
MsG0180005862.01.T01 MTR_7g075870 49.254 67 34 0 10 76 3 69 2.36e-17 77.8
MsG0180005862.01.T01 MTR_6g464720 47.826 69 35 1 9 76 2 70 2.48e-17 78.6
MsG0180005862.01.T01 MTR_5g031000 47.059 68 36 0 9 76 2 69 6.36e-17 77.4
MsG0180005862.01.T01 MTR_5g031000 47.059 68 36 0 9 76 2 69 6.88e-17 77.0
MsG0180005862.01.T01 MTR_7g016600 49.296 71 33 2 7 76 2 70 1.17e-16 76.6
MsG0180005862.01.T01 MTR_3g088615 48.571 70 34 1 9 76 2 71 1.39e-16 75.1
MsG0180005862.01.T01 MTR_6g015975 47.826 69 35 1 9 76 2 70 1.40e-16 76.6
MsG0180005862.01.T01 MTR_8g066260 44.928 69 37 1 9 76 2 70 3.92e-16 75.1
MsG0180005862.01.T01 MTR_1g029670 29.412 170 97 5 9 177 2 149 4.13e-16 73.9
MsG0180005862.01.T01 MTR_5g046870 47.826 69 35 1 9 76 2 70 4.32e-16 72.0
MsG0180005862.01.T01 MTR_7g075870 48.529 68 34 1 10 76 3 70 4.78e-16 74.3
MsG0180005862.01.T01 MTR_2g461710 53.571 56 26 0 9 64 2 57 5.71e-16 70.1
MsG0180005862.01.T01 MTR_5g021270 40.187 107 56 3 9 113 2 102 7.63e-16 74.3
MsG0180005862.01.T01 MTR_5g021270 40.187 107 56 3 9 113 2 102 8.07e-16 73.9
MsG0180005862.01.T01 MTR_1g038300 47.143 70 35 1 9 76 2 71 1.31e-15 73.6
MsG0180005862.01.T01 MTR_4g084740 47.222 72 37 1 9 79 2 73 1.84e-15 74.3
MsG0180005862.01.T01 MTR_7g016630 42.029 69 39 1 9 76 2 70 2.00e-15 73.6
MsG0180005862.01.T01 MTR_5g046790 42.029 69 39 1 9 76 2 70 2.32e-15 72.4
MsG0180005862.01.T01 MTR_4g109810 51.786 56 27 0 9 64 2 57 4.19e-15 72.4
MsG0180005862.01.T01 MTR_8g097090 44.928 69 37 1 9 76 2 70 1.04e-14 71.2
MsG0180005862.01.T01 MTR_3g084980 46.377 69 36 1 9 76 2 70 1.06e-14 71.2
MsG0180005862.01.T01 MTR_7g075850 45.714 70 36 1 9 76 2 71 1.18e-14 71.2
MsG0180005862.01.T01 MTR_3g113030 30.588 170 96 7 9 173 2 154 1.46e-14 70.5
MsG0180005862.01.T01 MTR_3g109930 31.206 141 79 3 27 159 20 150 2.24e-14 68.9
MsG0180005862.01.T01 MTR_4g108720 29.143 175 110 6 9 171 2 174 2.45e-14 71.2
MsG0180005862.01.T01 MTR_5g066960 45.614 57 31 0 9 65 2 58 4.46e-14 65.1
MsG0180005862.01.T01 MTR_3g437790 33.566 143 78 4 26 159 30 164 4.65e-14 68.6
MsG0180005862.01.T01 MTR_4g093030 30.573 157 74 5 9 135 2 153 8.38e-13 64.3
MsG0180005862.01.T01 MTR_4g036050 28.571 182 106 7 9 182 2 167 1.11e-12 64.7
MsG0180005862.01.T01 MTR_4g036050 29.730 185 107 7 9 186 2 170 1.12e-12 65.1
MsG0180005862.01.T01 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.76e-12 63.5
MsG0180005862.01.T01 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.89e-12 63.5
MsG0180005862.01.T01 MTR_4g051538 32.353 136 80 1 5 128 5 140 4.31e-12 63.9
MsG0180005862.01.T01 MTR_1g041615 34.951 103 58 2 20 121 17 111 5.61e-12 61.6
MsG0180005862.01.T01 MTR_5g041650 40.541 74 42 1 9 80 39 112 4.52e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005862.01.T01 AT5G60440 53.804 184 78 3 5 181 3 186 1.94e-58 187
MsG0180005862.01.T01 AT2G24840 48.193 166 75 4 9 168 63 223 9.15e-44 148
MsG0180005862.01.T01 AT1G01530 43.478 184 96 4 4 183 2 181 9.78e-40 137
MsG0180005862.01.T01 AT1G65360 42.308 182 98 4 5 181 3 182 1.10e-39 136
MsG0180005862.01.T01 AT4G36590 44.444 171 85 4 5 167 3 171 3.76e-39 135
MsG0180005862.01.T01 AT2G34440 36.486 148 92 2 9 156 2 147 7.03e-28 104
MsG0180005862.01.T01 AT3G04100 32.105 190 117 3 2 183 7 192 9.87e-26 100
MsG0180005862.01.T01 AT3G66656 38.583 127 74 1 9 131 2 128 8.57e-24 94.0
MsG0180005862.01.T01 AT1G72350 34.211 152 67 4 9 160 43 161 1.07e-21 89.7
MsG0180005862.01.T01 AT4G09960 37.778 135 76 4 9 137 2 134 4.36e-21 87.8
MsG0180005862.01.T01 AT4G09960 37.778 135 76 4 9 137 3 135 5.51e-21 88.2
MsG0180005862.01.T01 AT4G09960 37.778 135 76 4 9 137 2 134 5.70e-21 88.2
MsG0180005862.01.T01 AT4G09960 37.778 135 76 4 9 137 12 144 7.40e-21 87.8
MsG0180005862.01.T01 AT4G09960 37.778 135 76 4 9 137 28 160 9.43e-21 87.8
MsG0180005862.01.T01 AT4G24540 36.486 148 77 4 9 156 2 132 3.28e-20 85.9
MsG0180005862.01.T01 AT4G09960 37.879 132 74 4 9 134 97 226 4.00e-20 87.4
MsG0180005862.01.T01 AT1G28460 30.178 169 113 3 5 169 4 171 4.66e-20 84.3
MsG0180005862.01.T01 AT1G29962 29.240 171 115 2 5 169 4 174 5.26e-20 84.3
MsG0180005862.01.T01 AT2G45660 51.471 68 33 0 10 77 3 70 6.06e-20 83.6
MsG0180005862.01.T01 AT2G45650 51.471 68 33 0 9 76 2 69 1.58e-19 84.7
MsG0180005862.01.T01 AT2G45660 51.471 68 33 0 10 77 3 70 2.65e-19 83.2
MsG0180005862.01.T01 AT5G51870 53.731 67 31 0 10 76 3 69 1.06e-18 80.5
MsG0180005862.01.T01 AT5G51870 53.731 67 31 0 10 76 3 69 1.56e-18 80.9
MsG0180005862.01.T01 AT3G57230 45.588 68 37 0 9 76 2 69 1.76e-18 79.3
MsG0180005862.01.T01 AT2G22540 50.000 68 34 0 9 76 2 69 1.84e-18 81.6
MsG0180005862.01.T01 AT2G22540 50.000 68 34 0 9 76 2 69 1.84e-18 81.6
MsG0180005862.01.T01 AT5G10140 52.174 69 32 1 9 76 2 70 2.15e-18 79.7
MsG0180005862.01.T01 AT4G18960 38.053 113 68 2 2 112 11 123 2.17e-18 81.6
MsG0180005862.01.T01 AT5G51870 51.389 72 35 0 5 76 21 92 2.19e-18 80.5
MsG0180005862.01.T01 AT5G51870 53.731 67 31 0 10 76 3 69 2.81e-18 80.5
MsG0180005862.01.T01 AT5G10140 52.174 69 32 1 9 76 2 70 3.22e-18 79.7
MsG0180005862.01.T01 AT2G42830 49.333 75 36 1 2 76 12 84 3.42e-18 80.9
MsG0180005862.01.T01 AT5G51870 53.731 67 31 0 10 76 13 79 3.47e-18 80.5
MsG0180005862.01.T01 AT2G42830 49.333 75 36 1 2 76 12 84 3.50e-18 80.9
MsG0180005862.01.T01 AT5G10140 52.174 69 32 1 9 76 2 70 3.65e-18 79.7
MsG0180005862.01.T01 AT5G10140 52.174 69 32 1 9 76 2 70 3.85e-18 79.3
MsG0180005862.01.T01 AT4G37940 47.059 68 36 0 9 76 2 69 4.94e-18 80.1
MsG0180005862.01.T01 AT4G37940 47.059 68 36 0 9 76 2 69 5.62e-18 79.7
MsG0180005862.01.T01 AT5G62165 49.254 67 34 0 10 76 3 69 6.01e-18 78.2
MsG0180005862.01.T01 AT5G62165 49.254 67 34 0 10 76 3 69 6.01e-18 78.2
MsG0180005862.01.T01 AT5G62165 49.254 67 34 0 10 76 3 69 6.01e-18 78.2
MsG0180005862.01.T01 AT4G22950 50.746 67 33 0 10 76 3 69 6.36e-18 78.6
MsG0180005862.01.T01 AT3G58780 49.333 75 36 1 2 76 12 84 6.40e-18 80.1
MsG0180005862.01.T01 AT3G57230 45.588 68 37 0 9 76 2 69 6.70e-18 80.1
MsG0180005862.01.T01 AT3G57230 45.588 68 37 0 9 76 2 69 6.70e-18 80.1
MsG0180005862.01.T01 AT5G13790 51.471 68 33 0 9 76 2 69 7.10e-18 80.5
MsG0180005862.01.T01 AT5G13790 51.471 68 33 0 9 76 2 69 7.25e-18 80.5
MsG0180005862.01.T01 AT5G62165 49.254 67 34 0 10 76 3 69 7.49e-18 77.8
MsG0180005862.01.T01 AT5G62165 49.254 67 34 0 10 76 3 69 7.49e-18 77.8
MsG0180005862.01.T01 AT5G62165 49.254 67 34 0 10 76 3 69 7.49e-18 77.8
MsG0180005862.01.T01 AT5G62165 49.254 67 34 0 10 76 3 69 7.49e-18 77.8
MsG0180005862.01.T01 AT5G62165 49.254 67 34 0 10 76 3 69 7.49e-18 77.8
MsG0180005862.01.T01 AT5G62165 49.254 67 34 0 10 76 3 69 8.06e-18 76.3
MsG0180005862.01.T01 AT3G58780 49.333 75 36 1 2 76 18 90 8.18e-18 80.1
MsG0180005862.01.T01 AT4G37940 47.059 68 36 0 9 76 2 69 8.28e-18 78.2
MsG0180005862.01.T01 AT3G57390 48.529 68 35 0 9 76 2 69 8.29e-18 79.3
MsG0180005862.01.T01 AT3G58780 49.333 75 36 1 2 76 12 84 1.07e-17 80.1
MsG0180005862.01.T01 AT3G57390 48.529 68 35 0 9 76 2 69 2.11e-17 79.0
MsG0180005862.01.T01 AT5G62165 49.254 67 34 0 10 76 3 69 2.33e-17 77.8
MsG0180005862.01.T01 AT5G62165 49.254 67 34 0 10 76 3 69 2.33e-17 77.8
MsG0180005862.01.T01 AT5G62165 49.254 67 34 0 10 76 3 69 2.33e-17 77.8
MsG0180005862.01.T01 AT5G62165 49.254 67 34 0 10 76 3 69 2.38e-17 77.4
MsG0180005862.01.T01 AT5G62165 49.254 67 34 0 10 76 3 69 2.38e-17 77.4
MsG0180005862.01.T01 AT4G22950 50.746 67 33 0 10 76 3 69 2.50e-17 78.2
MsG0180005862.01.T01 AT4G22950 50.746 67 33 0 10 76 3 69 2.50e-17 78.2
MsG0180005862.01.T01 AT5G51860 50.746 67 33 0 10 76 3 69 8.43e-17 76.3
MsG0180005862.01.T01 AT1G26310 47.887 71 34 2 7 76 2 70 9.65e-17 77.0
MsG0180005862.01.T01 AT5G51860 50.746 67 33 0 10 76 3 69 1.15e-16 76.3
MsG0180005862.01.T01 AT3G30260 44.928 69 37 1 9 76 2 70 1.15e-16 76.6
MsG0180005862.01.T01 AT1G69120 47.887 71 34 2 7 76 2 70 1.50e-16 76.3
MsG0180005862.01.T01 AT3G61120 47.059 68 36 0 9 76 2 69 1.50e-16 76.3
MsG0180005862.01.T01 AT2G14210 44.928 69 37 1 9 76 2 70 1.97e-16 75.9
MsG0180005862.01.T01 AT5G65050 47.826 69 35 1 9 76 2 70 2.33e-16 74.3
MsG0180005862.01.T01 AT1G77980 50.000 72 35 1 9 79 2 73 2.51e-16 77.0
MsG0180005862.01.T01 AT5G60910 46.377 69 36 1 9 76 2 70 2.65e-16 75.9
MsG0180005862.01.T01 AT2G14210 44.928 69 37 1 9 76 2 70 2.83e-16 75.5
MsG0180005862.01.T01 AT5G15800 47.826 69 35 1 9 76 2 70 2.84e-16 75.9
MsG0180005862.01.T01 AT1G77950 47.222 72 37 1 9 79 2 73 3.29e-16 75.5
MsG0180005862.01.T01 AT1G77950 47.222 72 37 1 9 79 2 73 3.29e-16 75.5
MsG0180005862.01.T01 AT1G77950 47.222 72 37 1 9 79 2 73 3.29e-16 75.5
MsG0180005862.01.T01 AT1G77950 47.222 72 37 1 9 79 2 73 3.29e-16 75.5
MsG0180005862.01.T01 AT4G11880 48.529 68 34 1 10 76 3 70 3.56e-16 73.9
MsG0180005862.01.T01 AT4G11880 48.529 68 34 1 10 76 3 70 3.56e-16 73.9
MsG0180005862.01.T01 AT1G69120 47.887 71 34 2 7 76 2 70 4.34e-16 75.5
MsG0180005862.01.T01 AT5G20240 45.205 73 38 1 9 79 2 74 4.75e-16 72.8
MsG0180005862.01.T01 AT5G15800 47.826 69 35 1 9 76 2 70 4.79e-16 75.5
MsG0180005862.01.T01 AT2G22540 48.529 68 30 1 9 76 2 64 5.95e-16 74.7
MsG0180005862.01.T01 AT5G65050 47.826 69 35 1 9 76 2 70 6.26e-16 73.6
MsG0180005862.01.T01 AT5G65060 47.826 69 35 1 9 76 2 70 6.54e-16 73.6
MsG0180005862.01.T01 AT5G65050 47.826 69 35 1 9 76 2 70 6.62e-16 73.6
MsG0180005862.01.T01 AT5G20240 45.205 73 38 1 9 79 2 74 6.91e-16 73.9
MsG0180005862.01.T01 AT4G11880 48.529 68 34 1 10 76 3 70 7.39e-16 73.9
MsG0180005862.01.T01 AT4G11880 48.529 68 34 1 10 76 3 70 7.39e-16 73.9
MsG0180005862.01.T01 AT5G65050 47.826 69 35 1 9 76 2 70 7.55e-16 73.2
MsG0180005862.01.T01 AT1G22130 48.611 72 36 1 9 79 2 73 9.05e-16 75.5
MsG0180005862.01.T01 AT5G65060 47.826 69 35 1 9 76 2 70 1.01e-15 72.8
MsG0180005862.01.T01 AT5G23260 49.333 75 36 1 5 77 14 88 1.12e-15 74.3
MsG0180005862.01.T01 AT5G65060 47.826 69 35 1 9 76 2 70 1.14e-15 73.2
MsG0180005862.01.T01 AT5G23260 49.333 75 36 1 5 77 14 88 1.25e-15 74.3
MsG0180005862.01.T01 AT1G28450 28.824 170 113 4 5 167 4 172 1.30e-15 72.8
MsG0180005862.01.T01 AT3G58780 52.308 65 29 1 2 66 12 74 1.32e-15 73.9
MsG0180005862.01.T01 AT3G58780 52.308 65 29 1 2 66 12 74 1.79e-15 73.9
MsG0180005862.01.T01 AT3G02310 46.377 69 36 1 9 76 2 70 1.91e-15 72.4
MsG0180005862.01.T01 AT3G54340 28.372 215 126 9 9 204 2 207 1.94e-15 73.2
MsG0180005862.01.T01 AT5G23260 50.704 71 33 1 9 77 2 72 2.43e-15 73.2
MsG0180005862.01.T01 AT5G23260 50.704 71 33 1 9 77 2 72 2.52e-15 72.8
MsG0180005862.01.T01 AT2G03710 47.143 70 35 2 9 76 2 71 3.14e-15 71.6
MsG0180005862.01.T01 AT3G02310 46.377 69 36 1 9 76 2 70 6.47e-15 72.0
MsG0180005862.01.T01 AT2G22630 42.647 68 39 0 9 76 2 69 8.69e-15 71.2
MsG0180005862.01.T01 AT2G22630 42.647 68 39 0 9 76 2 69 8.69e-15 71.2
MsG0180005862.01.T01 AT1G24260 44.928 69 37 1 9 76 2 70 9.78e-15 71.6
MsG0180005862.01.T01 AT1G24260 44.928 69 37 1 9 76 2 70 1.01e-14 71.6
MsG0180005862.01.T01 AT5G65070 40.580 69 40 1 9 76 2 70 1.04e-14 69.3
MsG0180005862.01.T01 AT1G24260 44.928 69 37 1 9 76 2 70 1.08e-14 71.2
MsG0180005862.01.T01 AT2G03710 47.143 70 35 2 9 76 2 71 1.13e-14 71.6
MsG0180005862.01.T01 AT2G03710 47.143 70 35 2 9 76 2 71 1.18e-14 71.2
MsG0180005862.01.T01 AT5G65070 40.580 69 40 1 9 76 2 70 1.93e-14 69.7
MsG0180005862.01.T01 AT1G17310 50.633 79 37 1 8 86 47 123 1.97e-14 70.1
MsG0180005862.01.T01 AT1G71692 44.928 69 37 1 10 77 3 71 2.05e-14 70.1
MsG0180005862.01.T01 AT1G47760 43.284 67 38 0 9 75 2 68 2.07e-14 69.3
MsG0180005862.01.T01 AT1G17310 50.633 79 37 1 8 86 58 134 2.58e-14 70.1
MsG0180005862.01.T01 AT1G18750 42.667 75 41 1 9 81 2 76 3.16e-14 71.2
MsG0180005862.01.T01 AT1G18750 42.667 75 41 1 9 81 2 76 3.48e-14 71.2
MsG0180005862.01.T01 AT1G18750 42.667 75 41 1 9 81 2 76 3.54e-14 71.2
MsG0180005862.01.T01 AT5G65070 40.580 69 40 1 9 76 2 70 4.78e-14 69.3
MsG0180005862.01.T01 AT5G65070 40.580 69 40 1 9 76 2 70 5.50e-14 68.9
MsG0180005862.01.T01 AT5G65070 45.614 57 31 0 9 65 2 58 3.10e-13 67.0
MsG0180005862.01.T01 AT2G03060 28.824 170 96 8 9 159 2 165 6.15e-13 67.4
MsG0180005862.01.T01 AT2G03060 28.824 170 96 8 9 159 2 165 6.18e-13 67.4
MsG0180005862.01.T01 AT2G03060 28.824 170 96 8 9 159 2 165 6.18e-13 67.4
MsG0180005862.01.T01 AT2G03060 28.824 170 96 8 9 159 2 165 6.18e-13 67.4
MsG0180005862.01.T01 AT5G65080 40.580 69 40 1 9 76 9 77 1.03e-12 65.1
MsG0180005862.01.T01 AT5G65080 46.296 54 29 0 9 62 9 62 4.95e-12 63.2
MsG0180005862.01.T01 AT1G69540 43.243 74 41 1 9 81 2 75 4.99e-12 64.7
MsG0180005862.01.T01 AT1G69540 42.105 76 43 1 9 83 2 77 6.64e-12 64.3
MsG0180005862.01.T01 AT4G37435 39.437 71 42 1 9 78 2 72 7.27e-12 62.4
MsG0180005862.01.T01 AT1G77080 49.275 69 34 1 9 76 2 70 1.14e-11 61.6
MsG0180005862.01.T01 AT1G77080 49.275 69 34 1 9 76 2 70 1.28e-11 61.6
MsG0180005862.01.T01 AT5G49420 36.170 94 53 2 5 91 3 96 1.47e-11 63.5
MsG0180005862.01.T01 AT1G77080 49.275 69 34 1 9 76 2 70 2.84e-11 61.2
MsG0180005862.01.T01 AT5G49490 37.500 88 48 2 5 85 41 128 3.65e-11 62.0
MsG0180005862.01.T01 AT1G77080 49.275 69 34 1 9 76 2 70 7.50e-11 60.5

Find 49 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACTTGAATTATTCAAAA+AGG 0.249457 1:+96977628 MsG0180005862.01.T01:CDS
ATTTCAGCTTGTTGAGGATT+TGG 0.288922 1:-96977755 None:intergenic
TCGCAGCCTCATTTGTTTGA+TGG 0.301546 1:+96977815 MsG0180005862.01.T01:CDS
TGGTGGGCTTGTCCGGTTGA+TGG 0.317499 1:+96977593 MsG0180005862.01.T01:CDS
CCTCTGTTTCCTTGAGCAAA+TGG 0.356090 1:-96977562 None:intergenic
TCACCATGGCTTTAACAATA+TGG 0.358477 1:+96977850 MsG0180005862.01.T01:CDS
CTCATCGCCAATCTTCTTCT+CGG 0.372729 1:-96977534 None:intergenic
GTCTATGACCGTATCAAGAT+TGG 0.398383 1:-96977390 None:intergenic
TCCGGTTGATGGGATGAATA+GGG 0.429925 1:+96977604 MsG0180005862.01.T01:CDS
GTCCGGTTGATGGGATGAAT+AGG 0.433236 1:+96977603 MsG0180005862.01.T01:CDS
GGTGGGCTTGTCCGGTTGAT+GGG 0.441656 1:+96977594 MsG0180005862.01.T01:CDS
AGTGAGCTTTGCACCCTTTG+TGG 0.441727 1:+96977308 MsG0180005862.01.T01:CDS
TCTATGACCGTATCAAGATT+GGG 0.446553 1:-96977389 None:intergenic
AGGAAACAGAGGCTAAGTTT+TGG 0.455034 1:+96977573 MsG0180005862.01.T01:CDS
CATAGACCGCTATCTTTCTC+TGG 0.460785 1:+96977406 MsG0180005862.01.T01:CDS
CTGGATGCCGAGAAGAAGAT+TGG 0.460994 1:+96977527 MsG0180005862.01.T01:CDS
GTTGAGGATTTGGCTGATGA+TGG 0.467757 1:-96977745 None:intergenic
CTTTCTCAAAGCGCCGTAGC+GGG 0.471817 1:+96977270 MsG0180005862.01.T01:CDS
TCCCTATTCATCCCATCAAC+CGG 0.481029 1:-96977605 None:intergenic
AGCAGCATCTGCACCACAAA+GGG 0.492573 1:-96977321 None:intergenic
GCCTTTCTTTCCGCTCGACA+TGG 0.505646 1:-96977189 None:intergenic
GCCATGTCGAGCGGAAAGAA+AGG 0.510063 1:+96977188 None:intergenic
AGCATTGAGTTCACGAACAT+TGG 0.517207 1:-96977480 None:intergenic
ACAAAGGGTGCAAAGCTCAC+TGG 0.525840 1:-96977306 None:intergenic
ATCAATCCATCAAACAAATG+AGG 0.538978 1:-96977821 None:intergenic
TGGTCACCCCAATCTTGATA+CGG 0.553864 1:+96977382 MsG0180005862.01.T01:CDS
TGTATTCTCACCTAGTGGTA+AGG 0.555867 1:+96977349 MsG0180005862.01.T01:CDS
GGAAACATTTCAGCTTGTTG+AGG 0.562544 1:-96977761 None:intergenic
ACACCATATTGTTAAAGCCA+TGG 0.572464 1:-96977853 None:intergenic
ATCAAGATTGGGGTGACCAA+AGG 0.581678 1:-96977378 None:intergenic
CGAGAAGAAGATTGGCGATG+AGG 0.586593 1:+96977535 MsG0180005862.01.T01:CDS
TGAGGTGAGCCATTTGCTCA+AGG 0.593970 1:+96977553 MsG0180005862.01.T01:CDS
ACTTTCTCAAAGCGCCGTAG+CGG 0.594013 1:+96977269 MsG0180005862.01.T01:CDS
TCGAGCGGAAAGAAAGGCCG+AGG 0.597603 1:+96977194 MsG0180005862.01.T01:CDS
TGGCACCATGCAACTCATTG+AGG 0.610323 1:+96977445 MsG0180005862.01.T01:CDS
ATGATGGAGATAAATGTTCG+AGG 0.611297 1:-96977729 None:intergenic
CTCGTTGTATTCTCACCTAG+TGG 0.611491 1:+96977344 MsG0180005862.01.T01:CDS
AAGGAAAATACCTTACCACT+AGG 0.624124 1:-96977359 None:intergenic
CTTTCTTGAAGATCCCGCTA+CGG 0.625983 1:-96977283 None:intergenic
GAGCAGCATCTGCACCACAA+AGG 0.629318 1:-96977322 None:intergenic
GTGAGCCTCAATGAGTTGCA+TGG 0.629855 1:-96977450 None:intergenic
TGTGCTTAAGCCATGTCGAG+CGG 0.639376 1:+96977179 None:intergenic
CTATGACCGTATCAAGATTG+GGG 0.641126 1:-96977388 None:intergenic
GACTCAAATCAACAACACGC+TGG 0.644948 1:+96977508 MsG0180005862.01.T01:CDS
GTTCACGAACATTGGCATTG+TGG 0.649124 1:-96977472 None:intergenic
CCATTTGCTCAAGGAAACAG+AGG 0.656067 1:+96977562 MsG0180005862.01.T01:CDS
GGGGTACCAGAGAAAGATAG+CGG 0.705690 1:-96977412 None:intergenic
ATATTGTTAAAGCCATGGTG+AGG 0.709548 1:-96977848 None:intergenic
GGATTGATGATGCCTCACCA+TGG 0.728509 1:+96977836 MsG0180005862.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAACTTGAATTATTCAAAA+AGG + Chr1:96977628-96977647 MsG0180005862.01.T01:CDS 20.0%
!!! ATAGAATTTTGAAAAAATCG+TGG - Chr1:96977788-96977807 None:intergenic 20.0%
! TGAATTATTCAAAAAGGCTT+TGG + Chr1:96977634-96977653 MsG0180005862.01.T01:CDS 25.0%
!!! TCTTTTTCATCTCAATCTTT+TGG - Chr1:96977223-96977242 None:intergenic 25.0%
ATCAATCCATCAAACAAATG+AGG - Chr1:96977824-96977843 None:intergenic 30.0%
! ATTATTCAAAAAGGCTTTGG+AGG + Chr1:96977637-96977656 MsG0180005862.01.T01:CDS 30.0%
!! GAATTTTGAAAAAATCGTGG+TGG - Chr1:96977785-96977804 None:intergenic 30.0%
!!! CAAACTCATCCATTTTTTGT+TGG + Chr1:96977695-96977714 MsG0180005862.01.T01:CDS 30.0%
AAGGAAAATACCTTACCACT+AGG - Chr1:96977362-96977381 None:intergenic 35.0%
ACACCATATTGTTAAAGCCA+TGG - Chr1:96977856-96977875 None:intergenic 35.0%
ATATTGTTAAAGCCATGGTG+AGG - Chr1:96977851-96977870 None:intergenic 35.0%
TCTATGACCGTATCAAGATT+GGG - Chr1:96977392-96977411 None:intergenic 35.0%
! ATGATGGAGATAAATGTTCG+AGG - Chr1:96977732-96977751 None:intergenic 35.0%
!! AGTGGTAAGGTATTTTCCTT+TGG + Chr1:96977362-96977381 MsG0180005862.01.T01:CDS 35.0%
!! ATTTCAGCTTGTTGAGGATT+TGG - Chr1:96977758-96977777 None:intergenic 35.0%
!! TCACCATGGCTTTAACAATA+TGG + Chr1:96977850-96977869 MsG0180005862.01.T01:CDS 35.0%
CTATGACCGTATCAAGATTG+GGG - Chr1:96977391-96977410 None:intergenic 40.0%
GTCTATGACCGTATCAAGAT+TGG - Chr1:96977393-96977412 None:intergenic 40.0%
TGTATTCTCACCTAGTGGTA+AGG + Chr1:96977349-96977368 MsG0180005862.01.T01:CDS 40.0%
! AGCATTGAGTTCACGAACAT+TGG - Chr1:96977483-96977502 None:intergenic 40.0%
! AGGAAACAGAGGCTAAGTTT+TGG + Chr1:96977573-96977592 MsG0180005862.01.T01:CDS 40.0%
!! AAACAGAGGCTAAGTTTTGG+TGG + Chr1:96977576-96977595 MsG0180005862.01.T01:CDS 40.0%
!! AACAGAGGCTAAGTTTTGGT+GGG + Chr1:96977577-96977596 MsG0180005862.01.T01:CDS 40.0%
!! GAAGCGTTGCCAACAAAAAA+TGG - Chr1:96977707-96977726 None:intergenic 40.0%
!! GGAAACATTTCAGCTTGTTG+AGG - Chr1:96977764-96977783 None:intergenic 40.0%
ATCAAGATTGGGGTGACCAA+AGG - Chr1:96977381-96977400 None:intergenic 45.0%
CATAGACCGCTATCTTTCTC+TGG + Chr1:96977406-96977425 MsG0180005862.01.T01:CDS 45.0%
CCATTTGCTCAAGGAAACAG+AGG + Chr1:96977562-96977581 MsG0180005862.01.T01:CDS 45.0%
CCTCTGTTTCCTTGAGCAAA+TGG - Chr1:96977565-96977584 None:intergenic 45.0%
CTCATCGCCAATCTTCTTCT+CGG - Chr1:96977537-96977556 None:intergenic 45.0%
CTCGTTGTATTCTCACCTAG+TGG + Chr1:96977344-96977363 MsG0180005862.01.T01:CDS 45.0%
CTTTCTTGAAGATCCCGCTA+CGG - Chr1:96977286-96977305 None:intergenic 45.0%
GACTCAAATCAACAACACGC+TGG + Chr1:96977508-96977527 MsG0180005862.01.T01:CDS 45.0%
GTTCACGAACATTGGCATTG+TGG - Chr1:96977475-96977494 None:intergenic 45.0%
GTTGAGGATTTGGCTGATGA+TGG - Chr1:96977748-96977767 None:intergenic 45.0%
TCCCTATTCATCCCATCAAC+CGG - Chr1:96977608-96977627 None:intergenic 45.0%
TCGCAGCCTCATTTGTTTGA+TGG + Chr1:96977815-96977834 MsG0180005862.01.T01:CDS 45.0%
TGGTCACCCCAATCTTGATA+CGG + Chr1:96977382-96977401 MsG0180005862.01.T01:CDS 45.0%
! TCTCAATCTTTTGGCGACCT+CGG - Chr1:96977214-96977233 None:intergenic 45.0%
!! TCCGGTTGATGGGATGAATA+GGG + Chr1:96977604-96977623 MsG0180005862.01.T01:CDS 45.0%
!!! ATGGTGCCATTGTTTTGTGG+GGG - Chr1:96977434-96977453 None:intergenic 45.0%
!!! CATGGTGCCATTGTTTTGTG+GGG - Chr1:96977435-96977454 None:intergenic 45.0%
!!! GCATGGTGCCATTGTTTTGT+GGG - Chr1:96977436-96977455 None:intergenic 45.0%
!!! TAAGTTTTGGTGGGCTTGTC+CGG + Chr1:96977586-96977605 MsG0180005862.01.T01:CDS 45.0%
!!! TGCATGGTGCCATTGTTTTG+TGG - Chr1:96977437-96977456 None:intergenic 45.0%
AGCAGCATCTGCACCACAAA+GGG - Chr1:96977324-96977343 None:intergenic 50.0%
AGTGAGCTTTGCACCCTTTG+TGG + Chr1:96977308-96977327 MsG0180005862.01.T01:CDS 50.0%
CGAGAAGAAGATTGGCGATG+AGG + Chr1:96977535-96977554 MsG0180005862.01.T01:CDS 50.0%
CTGGATGCCGAGAAGAAGAT+TGG + Chr1:96977527-96977546 MsG0180005862.01.T01:CDS 50.0%
CTGGTACCCCCACAAAACAA+TGG + Chr1:96977425-96977444 MsG0180005862.01.T01:CDS 50.0%
GTGAGCCTCAATGAGTTGCA+TGG - Chr1:96977453-96977472 None:intergenic 50.0%
TGAGGTGAGCCATTTGCTCA+AGG + Chr1:96977553-96977572 MsG0180005862.01.T01:CDS 50.0%
TGGCACCATGCAACTCATTG+AGG + Chr1:96977445-96977464 MsG0180005862.01.T01:CDS 50.0%
! ACAAAGGGTGCAAAGCTCAC+TGG - Chr1:96977309-96977328 None:intergenic 50.0%
! GGGGTACCAGAGAAAGATAG+CGG - Chr1:96977415-96977434 None:intergenic 50.0%
!! ACTTTCTCAAAGCGCCGTAG+CGG + Chr1:96977269-96977288 MsG0180005862.01.T01:CDS 50.0%
!! GGATTGATGATGCCTCACCA+TGG + Chr1:96977836-96977855 MsG0180005862.01.T01:CDS 50.0%
!! GTCCGGTTGATGGGATGAAT+AGG + Chr1:96977603-96977622 MsG0180005862.01.T01:CDS 50.0%
GAGCAGCATCTGCACCACAA+AGG - Chr1:96977325-96977344 None:intergenic 55.0%
!! CTTTCTCAAAGCGCCGTAGC+GGG + Chr1:96977270-96977289 MsG0180005862.01.T01:CDS 55.0%
TCGAGCGGAAAGAAAGGCCG+AGG + Chr1:96977194-96977213 MsG0180005862.01.T01:CDS 60.0%
! GGTGGGCTTGTCCGGTTGAT+GGG + Chr1:96977594-96977613 MsG0180005862.01.T01:CDS 60.0%
!! TGGTGGGCTTGTCCGGTTGA+TGG + Chr1:96977593-96977612 MsG0180005862.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 96977191 96977877 96977191 ID=MsG0180005862.01;Name=MsG0180005862.01
Chr1 mRNA 96977191 96977877 96977191 ID=MsG0180005862.01.T01;Parent=MsG0180005862.01;Name=MsG0180005862.01.T01;_AED=0.34;_eAED=0.34;_QI=0|-1|0|1|-1|1|1|0|228
Chr1 exon 96977191 96977877 96977191 ID=MsG0180005862.01.T01:exon:30240;Parent=MsG0180005862.01.T01
Chr1 CDS 96977191 96977877 96977191 ID=MsG0180005862.01.T01:cds;Parent=MsG0180005862.01.T01
Gene Sequence

>MsG0180005862.01.T01

ATGTCGAGCGGAAAGAAAGGCCGAGGTCGCCAAAAGATTGAGATGAAAAAGATGAGCAACGAGAGCAACTTGCAAGTTACTTTCTCAAAGCGCCGTAGCGGGATCTTCAAGAAAGCCAGTGAGCTTTGCACCCTTTGTGGTGCAGATGCTGCTCTCGTTGTATTCTCACCTAGTGGTAAGGTATTTTCCTTTGGTCACCCCAATCTTGATACGGTCATAGACCGCTATCTTTCTCTGGTACCCCCACAAAACAATGGCACCATGCAACTCATTGAGGCTCACCACAATGCCAATGTTCGTGAACTCAATGCTCAGATGACTCAAATCAACAACACGCTGGATGCCGAGAAGAAGATTGGCGATGAGGTGAGCCATTTGCTCAAGGAAACAGAGGCTAAGTTTTGGTGGGCTTGTCCGGTTGATGGGATGAATAGGGATCAACTTGAATTATTCAAAAAGGCTTTGGAGGAGCTTAAGAAACTTGTAATTCAGCATGCTGCAACTCAAACTCATCCATTTTTTGTTGGCAACGCTTCTTCCTCGAACATTTATCTCCATCATCAGCCAAATCCTCAACAAGCTGAAATGTTTCCACCACGATTTTTTCAAAATTCTATGTTGCAATCGCAGCCTCATTTGTTTGATGGATTGATGATGCCTCACCATGGCTTTAACAATATGGTGTAA
Protein sequence

>MsG0180005862.01.T01

MSSGKKGRGRQKIEMKKMSNESNLQVTFSKRRSGIFKKASELCTLCGADAALVVFSPSGKVFSFGHPNLDTVIDRYLSLVPPQNNGTMQLIEAHHNANVRELNAQMTQINNTLDAEKKIGDEVSHLLKETEAKFWWACPVDGMNRDQLELFKKALEELKKLVIQHAATQTHPFFVGNASSSNIYLHHQPNPQQAEMFPPRFFQNSMLQSQPHLFDGLMMPHHGFNNMV*