AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005904.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005904.01.T01 MTR_8g010370 53.846 117 19 3 4 93 147 255 1.76e-27 107
MsG0180005904.01.T01 MTR_2g104470 60.227 88 8 1 33 93 16 103 1.53e-25 98.2
MsG0180005904.01.T01 MTR_4g017520 60.227 88 8 1 33 93 16 103 1.08e-24 98.6
MsG0180005904.01.T01 MTR_8g064930 95.238 42 2 0 144 185 8 49 3.34e-22 87.0
MsG0180005904.01.T01 MTR_4g086835 51.961 102 15 2 168 235 302 403 1.17e-21 93.6
MsG0180005904.01.T01 MTR_4g086835 51.961 102 15 2 168 235 301 402 1.17e-21 93.6
MsG0180005904.01.T01 MTR_1g062200 65.753 73 18 1 1 73 108 173 4.85e-20 90.1
MsG0180005904.01.T01 MTR_1g062200 65.753 73 18 1 1 73 108 173 4.90e-20 89.7
MsG0180005904.01.T01 MTR_1g052720 48.387 62 32 0 124 185 34 95 2.75e-12 65.9
MsG0180005904.01.T01 MTR_6g465600 46.774 62 33 0 124 185 37 98 1.10e-11 64.3
MsG0180005904.01.T01 MTR_7g050355 46.970 66 34 1 120 185 34 98 5.18e-11 62.8
MsG0180005904.01.T01 MTR_0091s0080 45.946 74 29 1 123 185 224 297 7.13e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 39 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTATATTCATGTAAATTT+TGG 0.133481 1:+97339520 MsG0180005904.01.T01:exon
TTGTAGTTCTTGGAGGTTTA+TGG 0.186325 1:+97339345 MsG0180005904.01.T01:CDS
GTCAAAATTTACATATTTCT+TGG 0.239711 1:-97339483 None:intergenic
CTGGAATTTGAAGACATATA+TGG 0.318108 1:+97338305 MsG0180005904.01.T01:CDS
GATCACTCTGTTGTAGTTCT+TGG 0.319431 1:+97339335 MsG0180005904.01.T01:CDS
TTTCCACCATCTCAGCATAT+TGG 0.372188 1:+97338252 MsG0180005904.01.T01:CDS
CACTCTGTTGTAGTTCTTGG+AGG 0.391490 1:+97339338 MsG0180005904.01.T01:CDS
CCATGGTTGCACTTATTTAG+TGG 0.392399 1:-97337127 None:intergenic
GTTCAAGTTGAAAAGAAGAA+TGG 0.414773 1:+97339011 MsG0180005904.01.T01:CDS
TATGAGTGGGTTGTGTTATG+AGG 0.422892 1:+97337930 MsG0180005904.01.T01:CDS
AAGGGCCACACCATACTCTT+TGG 0.424346 1:-97338943 None:intergenic
CATGGTTGCACTTATTTAGT+GGG 0.430381 1:-97337126 None:intergenic
TTCAAGTTGAAAAGAAGAAT+GGG 0.432151 1:+97339012 MsG0180005904.01.T01:CDS
AAGTTATTGTCAAGTCAAAT+AGG 0.442406 1:+97337704 MsG0180005904.01.T01:CDS
ACAATGGTGACGTTTCGCTT+CGG 0.463366 1:-97338990 None:intergenic
TGCATCTGAACTCGCATAGC+TGG 0.478504 1:-97337086 None:intergenic
TGAGGGCAACTTACATATCC+AGG 0.488191 1:+97337948 MsG0180005904.01.T01:CDS
GGGAAACAAATCTCATTTGA+AGG 0.490654 1:+97337660 MsG0180005904.01.T01:CDS
TTATTTAGTGGGATTGAAAG+TGG 0.496505 1:-97337115 None:intergenic
GAGTCATTGTATTGTTCTTG+AGG 0.529959 1:-97339371 None:intergenic
TTTCAGGGATTAAGAATCAA+GGG 0.540034 1:+97337640 MsG0180005904.01.T01:intron
CTCTTCCAAAGGTGATAGCA+TGG 0.542728 1:+97339391 MsG0180005904.01.T01:CDS
TGATCAGTACCACTTGCAGC+TGG 0.553337 1:-97339317 None:intergenic
TCATCACCAATATGCTGAGA+TGG 0.559689 1:-97338258 None:intergenic
GAACTCTCCGCGTATGAAGT+CGG 0.562568 1:-97339295 None:intergenic
CCACTAAATAAGTGCAACCA+TGG 0.572318 1:+97337127 MsG0180005904.01.T01:CDS
ATGAGTGGGTTGTGTTATGA+GGG 0.574980 1:+97337931 MsG0180005904.01.T01:CDS
GCAACATTACATAGTCGTCA+AGG 0.596714 1:-97338962 None:intergenic
TAATTTGCTAGGACAAGGCA+AGG 0.597697 1:+97338904 MsG0180005904.01.T01:intron
TCACCAATATGCTGAGATGG+TGG 0.601205 1:-97338255 None:intergenic
AGGTTGCGAGATTATATGAG+TGG 0.605845 1:+97337916 MsG0180005904.01.T01:intron
CACTAAATAAGTGCAACCAT+GGG 0.612855 1:+97337128 MsG0180005904.01.T01:CDS
TACTCTTTGGCAAAACACGT+TGG 0.617335 1:-97338930 None:intergenic
CAATACAATGACTCTTCCAA+AGG 0.638042 1:+97339380 MsG0180005904.01.T01:CDS
CGGAGAGTTCCAGCTGCAAG+TGG 0.640628 1:+97339308 MsG0180005904.01.T01:CDS
CAACATTACATAGTCGTCAA+GGG 0.643341 1:-97338961 None:intergenic
TCACATTCAAAACTGTCCCA+TGG 0.647681 1:-97337144 None:intergenic
AGAAATACCGACTTCATACG+CGG 0.668200 1:+97339288 MsG0180005904.01.T01:intron
GGTTGCGAGATTATATGAGT+GGG 0.681349 1:+97337917 MsG0180005904.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATCTATATCTATTTTATTT+TGG + Chr1:97339614-97339633 MsG0180005904.01.T01:three_prime_UTR 10.0%
!! ATGTGAAAATATACAAAAAT+TGG - Chr1:97338203-97338222 None:intergenic 15.0%
!!! AATAAAAGAAGACTATTTTT+AGG - Chr1:97338164-97338183 None:intergenic 15.0%
!!! ATAAAAGAAGACTATTTTTA+GGG - Chr1:97338163-97338182 None:intergenic 15.0%
!!! ATAGATATAGATTTTTAAGA+CGG - Chr1:97339607-97339626 None:intergenic 15.0%
!!! ATTTTTAAACATAAAGTGTT+AGG + Chr1:97337298-97337317 MsG0180005904.01.T01:intron 15.0%
!!! CATTATATTCATGTAAATTT+TGG + Chr1:97339520-97339539 MsG0180005904.01.T01:exon 15.0%
!! AAAAATGATGTAAAGAAATC+AGG - Chr1:97337894-97337913 None:intergenic 20.0%
!! AAACTATGGTAAAATTTCAA+AGG + Chr1:97337806-97337825 MsG0180005904.01.T01:intron 20.0%
!! AAATTTCAAACTTTGTTCAA+TGG - Chr1:97337486-97337505 None:intergenic 20.0%
!! ATGAAAAATCTGAGAATTAT+AGG + Chr1:97339426-97339445 MsG0180005904.01.T01:CDS 20.0%
!! GGTTTAAATTTATCAAAAGT+TGG + Chr1:97338741-97338760 MsG0180005904.01.T01:intron 20.0%
!! GTCAAAATTTACATATTTCT+TGG - Chr1:97339486-97339505 None:intergenic 20.0%
!!! ATGAAATATATGGATTACTT+AGG - Chr1:97338601-97338620 None:intergenic 20.0%
!!! GATTTCATACTTTTAGTATT+TGG + Chr1:97339642-97339661 MsG0180005904.01.T01:three_prime_UTR 20.0%
!!! GTTTATCTTTTGTATTTTCA+AGG + Chr1:97339095-97339114 MsG0180005904.01.T01:intron 20.0%
!!! TAGATATAGATTTTTAAGAC+GGG - Chr1:97339606-97339625 None:intergenic 20.0%
!!! TTTTGATAAATTTAAACCGA+TGG - Chr1:97338739-97338758 None:intergenic 20.0%
! AAAAATAATAGAAGCTAACC+TGG - Chr1:97337969-97337988 None:intergenic 25.0%
! AAACCTGATGTTAGATAAAA+AGG - Chr1:97338386-97338405 None:intergenic 25.0%
! AAAGCTATGAAACTGTTATA+AGG - Chr1:97338767-97338786 None:intergenic 25.0%
! AAGGAAAATATCGATAAGTA+AGG + Chr1:97339185-97339204 MsG0180005904.01.T01:intron 25.0%
! AAGTTATTGTCAAGTCAAAT+AGG + Chr1:97337704-97337723 MsG0180005904.01.T01:CDS 25.0%
! AATAAGAGAAACTGTGAAAT+TGG - Chr1:97339162-97339181 None:intergenic 25.0%
! ACACACATATATAAACAAAG+CGG - Chr1:97338562-97338581 None:intergenic 25.0%
! ACCATAGTTTCAATTTCTTT+AGG - Chr1:97337796-97337815 None:intergenic 25.0%
! ACCTAAAGAAATTGAAACTA+TGG + Chr1:97337792-97337811 MsG0180005904.01.T01:intron 25.0%
! AGATATACACCTATGTATTT+AGG + Chr1:97337436-97337455 MsG0180005904.01.T01:intron 25.0%
! ATGTTAGATAAAAAGGATTG+AGG - Chr1:97338379-97338398 None:intergenic 25.0%
! CACCATTAAAATCATTAAAG+AGG - Chr1:97338040-97338059 None:intergenic 25.0%
! CTATGTATTATGTGCATAAA+AGG + Chr1:97337183-97337202 MsG0180005904.01.T01:intron 25.0%
! GATATTTATGAGTTTAGATG+TGG + Chr1:97337830-97337849 MsG0180005904.01.T01:intron 25.0%
! TAAAGAAATCAGGAAAATGA+AGG - Chr1:97337884-97337903 None:intergenic 25.0%
! TTAGCAGTGAAAATATAGTT+TGG - Chr1:97338856-97338875 None:intergenic 25.0%
! TTTATCTAACATCAGGTTTA+TGG + Chr1:97338387-97338406 MsG0180005904.01.T01:intron 25.0%
!! AATCCTTTTTATCTAACATC+AGG + Chr1:97338380-97338399 MsG0180005904.01.T01:intron 25.0%
!! ATGAATTTTACATCATGCTT+TGG + Chr1:97339217-97339236 MsG0180005904.01.T01:intron 25.0%
!! GAACAAAGTTTGAAATTTAG+TGG + Chr1:97337488-97337507 MsG0180005904.01.T01:intron 25.0%
!! TATAGTTTGGAACAAAAAGA+AGG - Chr1:97338843-97338862 None:intergenic 25.0%
!! TGCCTCTTTAATGATTTTAA+TGG + Chr1:97338035-97338054 MsG0180005904.01.T01:intron 25.0%
!! TTCATGATTATTTTCACTCA+TGG - Chr1:97337686-97337705 None:intergenic 25.0%
!!! AAATTTTGGTGATTGAGTTT+TGG + Chr1:97339534-97339553 MsG0180005904.01.T01:exon 25.0%
!!! AATTTTGGTGATTGAGTTTT+GGG + Chr1:97339535-97339554 MsG0180005904.01.T01:exon 25.0%
!!! ACATTATTTGCTAATTTGCT+AGG + Chr1:97338893-97338912 MsG0180005904.01.T01:intron 25.0%
!!! ATGTAAATTTTGACGTCAAA+TGG + Chr1:97339492-97339511 MsG0180005904.01.T01:CDS 25.0%
!!! GGTTAGCTTCTATTATTTTT+TGG + Chr1:97337969-97337988 MsG0180005904.01.T01:intron 25.0%
!!! TTCAAGTTGAAAAGAAGAAT+GGG + Chr1:97339012-97339031 MsG0180005904.01.T01:CDS 25.0%
!!! TTTCTTTACATCATTTTTGC+AGG + Chr1:97337896-97337915 MsG0180005904.01.T01:intron 25.0%
!!! TTTCTTTTTAGTATGCTCTA+GGG + Chr1:97338658-97338677 MsG0180005904.01.T01:intron 25.0%
AAAACTCAGGTTTGTATTGA+AGG + Chr1:97337555-97337574 MsG0180005904.01.T01:intron 30.0%
AAACTCAGGTTTGTATTGAA+GGG + Chr1:97337556-97337575 MsG0180005904.01.T01:intron 30.0%
AAGAACCAGCATATTGTAAA+CGG - Chr1:97338104-97338123 None:intergenic 30.0%
AATCCATATATTTCATCCAG+TGG + Chr1:97338605-97338624 MsG0180005904.01.T01:intron 30.0%
ATACACCTATGTATTTAGGT+AGG + Chr1:97337440-97337459 MsG0180005904.01.T01:intron 30.0%
ATGAGCAATGAGTGATAAAT+TGG - Chr1:97338820-97338839 None:intergenic 30.0%
ATGTGTGTCATATATACGTT+TGG + Chr1:97338515-97338534 MsG0180005904.01.T01:intron 30.0%
CTGGAATTTGAAGACATATA+TGG + Chr1:97338305-97338324 MsG0180005904.01.T01:CDS 30.0%
GTTTCTTTGTAGATGATCTT+AGG + Chr1:97338010-97338029 MsG0180005904.01.T01:intron 30.0%
TTACACCAAGAAAAAAACTC+AGG + Chr1:97337542-97337561 MsG0180005904.01.T01:CDS 30.0%
TTATTTAGTGGGATTGAAAG+TGG - Chr1:97337118-97337137 None:intergenic 30.0%
TTTCAGGGATTAAGAATCAA+GGG + Chr1:97337640-97337659 MsG0180005904.01.T01:intron 30.0%
! CTTCTTTTCAACTTGAACAA+TGG - Chr1:97339009-97339028 None:intergenic 30.0%
! TGATCTCTTGCAAATTTTCA+GGG + Chr1:97337625-97337644 MsG0180005904.01.T01:intron 30.0%
! TTAGTGGTTATGTATTTTGC+AGG + Chr1:97337504-97337523 MsG0180005904.01.T01:intron 30.0%
!! GTTCAAGTTGAAAAGAAGAA+TGG + Chr1:97339011-97339030 MsG0180005904.01.T01:CDS 30.0%
!! GTTTCTTTTTAGTATGCTCT+AGG + Chr1:97338657-97338676 MsG0180005904.01.T01:intron 30.0%
!! TGATATTGCTTTTGTTGGAA+AGG + Chr1:97338278-97338297 MsG0180005904.01.T01:CDS 30.0%
!! TTTTCAGGGATTAAGAATCA+AGG + Chr1:97337639-97337658 MsG0180005904.01.T01:intron 30.0%
!!! ACAAACCTGAGTTTTTTTCT+TGG - Chr1:97337550-97337569 None:intergenic 30.0%
!!! TGAGTTTTTTTCTTGGTGTA+AGG - Chr1:97337543-97337562 None:intergenic 30.0%
ACACTTTGTATAGACACCAT+CGG + Chr1:97338720-97338739 MsG0180005904.01.T01:intron 35.0%
ACATTCCGTTTACAATATGC+TGG + Chr1:97338096-97338115 MsG0180005904.01.T01:intron 35.0%
ATATTGTAAACGGAATGTGC+TGG - Chr1:97338094-97338113 None:intergenic 35.0%
CAACATTACATAGTCGTCAA+GGG - Chr1:97338964-97338983 None:intergenic 35.0%
CAATACAATGACTCTTCCAA+AGG + Chr1:97339380-97339399 MsG0180005904.01.T01:CDS 35.0%
CACAGTTTCTCTTATTGTGA+AGG + Chr1:97339166-97339185 MsG0180005904.01.T01:intron 35.0%
CACTAAATAAGTGCAACCAT+GGG + Chr1:97337128-97337147 MsG0180005904.01.T01:CDS 35.0%
CATGGTTGCACTTATTTAGT+GGG - Chr1:97337129-97337148 None:intergenic 35.0%
GAGTCATTGTATTGTTCTTG+AGG - Chr1:97339374-97339393 None:intergenic 35.0%
GATAAATTGGATTACTGCCT+TGG - Chr1:97338807-97338826 None:intergenic 35.0%
GCATTCCTACCTAAATACAT+AGG - Chr1:97337448-97337467 None:intergenic 35.0%
GGGAAACAAATCTCATTTGA+AGG + Chr1:97337660-97337679 MsG0180005904.01.T01:CDS 35.0%
GTGATGAGAGGAAAAAAACT+CGG + Chr1:97339073-97339092 MsG0180005904.01.T01:intron 35.0%
TAGTTTCATCGCTTGCTTAT+AGG + Chr1:97338694-97338713 MsG0180005904.01.T01:intron 35.0%
TATTTCATCCAGTGGACATT+TGG + Chr1:97338613-97338632 MsG0180005904.01.T01:intron 35.0%
TCCTCTCATCACAATGATAT+TGG - Chr1:97339065-97339084 None:intergenic 35.0%
TGTCCACTGGATGAAATATA+TGG - Chr1:97338611-97338630 None:intergenic 35.0%
TTGTAGTTCTTGGAGGTTTA+TGG + Chr1:97339345-97339364 MsG0180005904.01.T01:CDS 35.0%
! GGTTGAATTTGAAATCGCAT+TGG + Chr1:97338408-97338427 MsG0180005904.01.T01:intron 35.0%
! GTGATCTCTTGCAAATTTTC+AGG + Chr1:97337624-97337643 MsG0180005904.01.T01:intron 35.0%
!! GCATTTTCTGGCAAATTTGA+GGG + Chr1:97337205-97337224 MsG0180005904.01.T01:intron 35.0%
!! GGTGATGATATTGCTTTTGT+TGG + Chr1:97338273-97338292 MsG0180005904.01.T01:CDS 35.0%
!! TTTGCTAATTTGCTAGGACA+AGG + Chr1:97338899-97338918 MsG0180005904.01.T01:intron 35.0%
!!! TGTGCATAAAAGGCATTTTC+TGG + Chr1:97337193-97337212 MsG0180005904.01.T01:intron 35.0%
AAAAGGATTGAGGTTCTCAG+TGG - Chr1:97338369-97338388 None:intergenic 40.0%
AATTGCAACCAAATGTCCAC+TGG - Chr1:97338624-97338643 None:intergenic 40.0%
AGAGTACACATCAGCAACAA+AGG - Chr1:97337764-97337783 None:intergenic 40.0%
AGGTTGCGAGATTATATGAG+TGG + Chr1:97337916-97337935 MsG0180005904.01.T01:intron 40.0%
CCACTAAATAAGTGCAACCA+TGG + Chr1:97337127-97337146 MsG0180005904.01.T01:CDS 40.0%
CCATGGTTGCACTTATTTAG+TGG - Chr1:97337130-97337149 None:intergenic 40.0%
GATCACTCTGTTGTAGTTCT+TGG + Chr1:97339335-97339354 MsG0180005904.01.T01:CDS 40.0%
GATTCGACAAAGTCTTACGT+TGG - Chr1:97337333-97337352 None:intergenic 40.0%
GCAACATTACATAGTCGTCA+AGG - Chr1:97338965-97338984 None:intergenic 40.0%
GCCAATATCATTGTGATGAG+AGG + Chr1:97339061-97339080 MsG0180005904.01.T01:intron 40.0%
GGTTGCGAGATTATATGAGT+GGG + Chr1:97337917-97337936 MsG0180005904.01.T01:intron 40.0%
TACTCTTTGGCAAAACACGT+TGG - Chr1:97338933-97338952 None:intergenic 40.0%
TCACATTCAAAACTGTCCCA+TGG - Chr1:97337147-97337166 None:intergenic 40.0%
TCATCACCAATATGCTGAGA+TGG - Chr1:97338261-97338280 None:intergenic 40.0%
TTTCCACCATCTCAGCATAT+TGG + Chr1:97338252-97338271 MsG0180005904.01.T01:CDS 40.0%
! ACGTGTTTTGCCAAAGAGTA+TGG + Chr1:97338933-97338952 MsG0180005904.01.T01:CDS 40.0%
! CATAGCTTTGCTTTGTATGC+TGG + Chr1:97338778-97338797 MsG0180005904.01.T01:intron 40.0%
! CTTTTGTTGGAAAGGACATC+TGG + Chr1:97338286-97338305 MsG0180005904.01.T01:CDS 40.0%
! GTTTTCCATGCTATCACCTT+TGG - Chr1:97339399-97339418 None:intergenic 40.0%
!! AGAAATACCGACTTCATACG+CGG + Chr1:97339288-97339307 MsG0180005904.01.T01:intron 40.0%
!! ATGAGTGGGTTGTGTTATGA+GGG + Chr1:97337931-97337950 MsG0180005904.01.T01:CDS 40.0%
!! GGCATTTTCTGGCAAATTTG+AGG + Chr1:97337204-97337223 MsG0180005904.01.T01:intron 40.0%
!! TAATTTGCTAGGACAAGGCA+AGG + Chr1:97338904-97338923 MsG0180005904.01.T01:intron 40.0%
!! TATGAGTGGGTTGTGTTATG+AGG + Chr1:97337930-97337949 MsG0180005904.01.T01:CDS 40.0%
!! TTTTGCCAAAGAGTATGGTG+TGG + Chr1:97338938-97338957 MsG0180005904.01.T01:CDS 40.0%
!!! TTTGGTGATTGAGTTTTGGG+TGG + Chr1:97339538-97339557 MsG0180005904.01.T01:three_prime_UTR 40.0%
CACTCTGTTGTAGTTCTTGG+AGG + Chr1:97339338-97339357 MsG0180005904.01.T01:CDS 45.0%
CTCTTCCAAAGGTGATAGCA+TGG + Chr1:97339391-97339410 MsG0180005904.01.T01:CDS 45.0%
GCTTTGTATGCTGGATACCA+AGG + Chr1:97338787-97338806 MsG0180005904.01.T01:intron 45.0%
TCACCAATATGCTGAGATGG+TGG - Chr1:97338258-97338277 None:intergenic 45.0%
TGAGGGCAACTTACATATCC+AGG + Chr1:97337948-97337967 MsG0180005904.01.T01:CDS 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - Chr1:97337374-97337393 None:intergenic 45.0%
! ACAATGGTGACGTTTCGCTT+CGG - Chr1:97338993-97339012 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - Chr1:97337375-97337394 None:intergenic 45.0%
!!! TGAGTTTTGGGTGGTGCTAA+AGG + Chr1:97339547-97339566 MsG0180005904.01.T01:three_prime_UTR 45.0%
AAGGGCCACACCATACTCTT+TGG - Chr1:97338946-97338965 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + Chr1:97337373-97337392 MsG0180005904.01.T01:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - Chr1:97337370-97337389 None:intergenic 50.0%
GAACTCTCCGCGTATGAAGT+CGG - Chr1:97339298-97339317 None:intergenic 50.0%
TGATCAGTACCACTTGCAGC+TGG - Chr1:97339320-97339339 None:intergenic 50.0%
TGCATCTGAACTCGCATAGC+TGG - Chr1:97337089-97337108 None:intergenic 50.0%
! AAGTCTTACGTTGGCTGTCG+AGG - Chr1:97337324-97337343 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - Chr1:97337376-97337395 None:intergenic 50.0%
ATGTAGCCGACCCCACTTAG+TGG + Chr1:97337361-97337380 MsG0180005904.01.T01:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + Chr1:97337368-97337387 MsG0180005904.01.T01:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + Chr1:97337362-97337381 MsG0180005904.01.T01:intron 55.0%
CGGAGAGTTCCAGCTGCAAG+TGG + Chr1:97339308-97339327 MsG0180005904.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 97337082 97339667 97337082 ID=MsG0180005904.01;Name=MsG0180005904.01
Chr1 mRNA 97337082 97339667 97337082 ID=MsG0180005904.01.T01;Parent=MsG0180005904.01;Name=MsG0180005904.01.T01;_AED=0.48;_eAED=0.57;_QI=0|0.33|0.28|1|0.66|0.71|7|132|264
Chr1 exon 97337082 97337166 97337082 ID=MsG0180005904.01.T01:exon:16338;Parent=MsG0180005904.01.T01
Chr1 exon 97337508 97337563 97337508 ID=MsG0180005904.01.T01:exon:16339;Parent=MsG0180005904.01.T01
Chr1 exon 97337646 97337725 97337646 ID=MsG0180005904.01.T01:exon:16340;Parent=MsG0180005904.01.T01
Chr1 exon 97337918 97337969 97337918 ID=MsG0180005904.01.T01:exon:16341;Parent=MsG0180005904.01.T01
Chr1 exon 97338195 97338347 97338195 ID=MsG0180005904.01.T01:exon:16342;Parent=MsG0180005904.01.T01
Chr1 exon 97338915 97339037 97338915 ID=MsG0180005904.01.T01:exon:16343;Parent=MsG0180005904.01.T01
Chr1 exon 97339290 97339667 97339290 ID=MsG0180005904.01.T01:exon:16344;Parent=MsG0180005904.01.T01
Chr1 CDS 97337082 97337166 97337082 ID=MsG0180005904.01.T01:cds;Parent=MsG0180005904.01.T01
Chr1 CDS 97337508 97337563 97337508 ID=MsG0180005904.01.T01:cds;Parent=MsG0180005904.01.T01
Chr1 CDS 97337646 97337725 97337646 ID=MsG0180005904.01.T01:cds;Parent=MsG0180005904.01.T01
Chr1 CDS 97337918 97337969 97337918 ID=MsG0180005904.01.T01:cds;Parent=MsG0180005904.01.T01
Chr1 CDS 97338195 97338347 97338195 ID=MsG0180005904.01.T01:cds;Parent=MsG0180005904.01.T01
Chr1 CDS 97338915 97339037 97338915 ID=MsG0180005904.01.T01:cds;Parent=MsG0180005904.01.T01
Chr1 CDS 97339290 97339535 97339290 ID=MsG0180005904.01.T01:cds;Parent=MsG0180005904.01.T01
Chr1 three_prime_UTR 97339536 97339667 97339536 ID=MsG0180005904.01.T01:three_prime_utr;Parent=MsG0180005904.01.T01
Gene Sequence

>MsG0180005904.01.T01

ATGACCAGCTATGCGAGTTCAGATGCAGCTGTTCCACTTTCAATCCCACTAAATAAGTGCAACCATGGGACAGTTTTGAATGTGATGGTTATGTATTTTGCAGGTAACAGTGCAGTGCCTTACACCAAGAAAAAAACTCAGGGATTAAGAATCAAGGGAAACAAATCTCATTTGAAGGCCATGAGTGAAAATAATCATGAAGTTATTGTCAAGTCAAATAGGTTGCGAGATTATATGAGTGGGTTGTGTTATGAGGGCAACTTACATATCCAGAATATCCAATTTTTGTATATTTTCACATTATGCACTCATCTGTCTATGCTCTTTGTGTTTCCACCATCTCAGCATATTGGTGATGATATTGCTTTTGTTGGAAAGGACATCTGGAATTTGAAGACATATATGGTTGAATATGAATTCACATCTGACAAGGCAAGGCTTCCAACGTGTTTTGCCAAAGAGTATGGTGTGGCCCTTGACGACTATGTAATGTTGCGTGATCCGAAGCGAAACGTCACCATTGTTCAAGTTGAAAAGAAGAATGGGAAAAAATACCGACTTCATACGCGGAGAGTTCCAGCTGCAAGTGGTACTGATCACTCTGTTGTAGTTCTTGGAGGTTTATGGATGCCTCAAGAACAATACAATGACTCTTCCAAAGGTGATAGCATGGAAAACGATGATGATGAAAAATCTGAGAATTATAGGATACACTACTTCGAACTAAAGATGATAATGTATGCCAAGAAATATGTAAATTTTGACGTCAAATGGCATTACATTATATTCATGTAA
Protein sequence

>MsG0180005904.01.T01

MTSYASSDAAVPLSIPLNKCNHGTVLNVMVMYFAGNSAVPYTKKKTQGLRIKGNKSHLKAMSENNHEVIVKSNRLRDYMSGLCYEGNLHIQNIQFLYIFTLCTHLSMLFVFPPSQHIGDDIAFVGKDIWNLKTYMVEYEFTSDKARLPTCFAKEYGVALDDYVMLRDPKRNVTIVQVEKKNGKKYRLHTRRVPAASGTDHSVVVLGGLWMPQEQYNDSSKGDSMENDDDEKSENYRIHYFELKMIMYAKKYVNFDVKWHYIIFM*