AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006343.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006343.01.T01 MTR_2g006570 69.231 260 9 3 1 189 55 314 3.07e-111 330
MsG0280006343.01.T01 MTR_2g006570 72.028 143 6 2 81 189 1 143 1.21e-60 195
MsG0280006343.01.T01 MTR_3g073470 45.679 243 68 7 11 189 59 301 1.16e-53 181
MsG0280006343.01.T01 MTR_3g084310 53.846 143 32 2 81 189 48 190 5.13e-42 145
MsG0280006343.01.T01 MTR_3g084310 53.846 143 32 2 81 189 48 190 1.54e-41 146
MsG0280006343.01.T01 MTR_8g081510 53.147 143 33 2 81 189 48 190 4.18e-41 145
MsG0280006343.01.T01 MTR_2g018290 42.515 167 59 4 57 189 101 264 4.59e-29 113
MsG0280006343.01.T01 MTR_5g030950 43.357 143 46 3 81 189 92 233 1.15e-28 112
MsG0280006343.01.T01 MTR_5g067060 41.958 143 48 3 81 189 81 222 4.29e-28 110
MsG0280006343.01.T01 MTR_7g108420 40.559 143 50 3 81 189 12 153 3.28e-20 87.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006343.01.T01 AT1G36370 49.367 237 46 5 24 189 83 316 1.39e-61 202
MsG0280006343.01.T01 AT1G22020 44.765 277 58 6 18 206 81 350 3.15e-61 201
MsG0280006343.01.T01 AT1G22020 44.765 277 58 6 18 206 81 350 3.15e-61 201
MsG0280006343.01.T01 AT4G13930 54.545 143 31 2 81 189 48 190 6.94e-42 147
MsG0280006343.01.T01 AT4G13890 51.748 143 35 2 81 189 48 190 6.49e-40 140
MsG0280006343.01.T01 AT4G13890 51.748 143 35 2 81 189 48 190 1.28e-39 141
MsG0280006343.01.T01 AT4G32520 43.956 182 59 6 43 189 87 260 1.07e-31 120
MsG0280006343.01.T01 AT4G32520 43.956 182 59 6 43 189 87 260 1.07e-31 120
MsG0280006343.01.T01 AT5G26780 44.056 143 45 3 81 189 91 232 4.89e-30 116
MsG0280006343.01.T01 AT5G26780 44.056 143 45 3 81 189 91 232 4.89e-30 116
MsG0280006343.01.T01 AT5G26780 44.056 143 45 3 81 189 91 232 5.10e-30 116
MsG0280006343.01.T01 AT5G26780 44.056 143 45 3 81 189 91 232 5.10e-30 116
MsG0280006343.01.T01 AT4G37930 42.657 143 47 3 81 189 91 232 1.43e-28 112

Find 53 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGAAGAATTTCGTATTCT+AGG 0.184768 2:+692782 MsG0280006343.01.T01:CDS
CAGAGTATTTATTCGTTAAA+TGG 0.201982 2:-693074 None:intergenic
CCGAATGGGAAGAAAGTTTC+TGG 0.213302 2:+693337 MsG0280006343.01.T01:CDS
TCTATCATCTTCATCGTTGT+TGG 0.322696 2:-692756 None:intergenic
CCACCACAAATAAGTATCTT+AGG 0.356752 2:-693454 None:intergenic
GGTTGTGATTGTAGAGGATT+CGG 0.392422 2:-692837 None:intergenic
CCAGAAACTTTCTTCCCATT+CGG 0.397392 2:-693337 None:intergenic
TAAATGTGGAGCTGTGTTAT+TGG 0.407425 2:+693527 MsG0280006343.01.T01:CDS
ATGCCTGGTGCACGTTACTA+TGG 0.415234 2:+693102 MsG0280006343.01.T01:CDS
ATGGGGTTGGATACTCCTTC+CGG 0.419166 2:+693286 MsG0280006343.01.T01:CDS
CGAATGGGAAGAAAGTTTCT+GGG 0.444376 2:+693338 MsG0280006343.01.T01:CDS
GGATTCTACGGAAGCTCTCT+TGG 0.445479 2:-692858 None:intergenic
CTTATAAGATAATCCTCAAT+GGG 0.447592 2:+693386 MsG0280006343.01.T01:CDS
CGTCCTAAGATACTTATTTG+TGG 0.451580 2:+693451 MsG0280006343.01.T01:CDS
TATACTGGATTGCTGTCGCC+GGG 0.478319 2:+693253 MsG0280006343.01.T01:CDS
GTATACTGGATTGCTGTCGC+CGG 0.479657 2:+693252 MsG0280006343.01.T01:CDS
AGCAAAATTAGCCGAAGTAC+AGG 0.484132 2:-693227 None:intergenic
GCTTATAAGATAATCCTCAA+TGG 0.484959 2:+693385 MsG0280006343.01.T01:CDS
ATTATGATAAGCTTGAAGAA+AGG 0.492239 2:+693416 MsG0280006343.01.T01:CDS
TTATGATAAGCTTGAAGAAA+GGG 0.499483 2:+693417 MsG0280006343.01.T01:CDS
AAATACTCTGAAGGAATGCC+TGG 0.501098 2:+693087 MsG0280006343.01.T01:CDS
CATAATCATAAAACCCATTG+AGG 0.503523 2:-693399 None:intergenic
CATGGATATTATACTCCGAA+TGG 0.509491 2:+693322 MsG0280006343.01.T01:CDS
CCACAAACAGAGAAAGAAAA+CGG 0.514774 2:+692713 MsG0280006343.01.T01:CDS
CCTAAGATACTTATTTGTGG+TGG 0.520445 2:+693454 MsG0280006343.01.T01:CDS
AAAAGCCGCGGTTCGATCGT+GGG 0.528207 2:+692916 MsG0280006343.01.T01:CDS
GAAAAGCCGCGGTTCGATCG+TGG 0.537478 2:+692915 MsG0280006343.01.T01:CDS
ATGGATATTATACTCCGAAT+GGG 0.537996 2:+693323 MsG0280006343.01.T01:CDS
CTAAGATACTTATTTGTGGT+GGG 0.538564 2:+693455 MsG0280006343.01.T01:CDS
CCACCATAGTAACGTGCACC+AGG 0.539950 2:-693105 None:intergenic
TTTGTTTGTAGGGCTGTGGA+TGG 0.542995 2:+693038 MsG0280006343.01.T01:intron
ATCACCTCGATCGGATTCTA+CGG 0.544145 2:-692870 None:intergenic
AACCCCATAATTCTATCCCC+CGG 0.565369 2:-693271 None:intergenic
TTAACGAATAAATACTCTGA+AGG 0.575868 2:+693078 MsG0280006343.01.T01:CDS
TGCAGCATATTCCTGTACTT+CGG 0.577731 2:+693216 MsG0280006343.01.T01:intron
TCCGGAGGGAATACTAGTCA+TGG 0.579396 2:+693304 MsG0280006343.01.T01:CDS
TTTCGTGACTCGAGATCAAG+TGG 0.581695 2:-692896 None:intergenic
TCTCTTGGTTGTGATTGTAG+AGG 0.582378 2:-692843 None:intergenic
TCCATGACTAGTATTCCCTC+CGG 0.583312 2:-693305 None:intergenic
TACTGGATTGCTGTCGCCGG+GGG 0.583385 2:+693255 MsG0280006343.01.T01:CDS
AAAGCCGCGGTTCGATCGTG+GGG 0.587387 2:+692917 MsG0280006343.01.T01:CDS
AGACATGTTGCAGATAAATG+TGG 0.598660 2:+693513 MsG0280006343.01.T01:CDS
AAGTGGACGATCACCTCGAT+CGG 0.612859 2:-692879 None:intergenic
GAATGGGAAGAAAGTTTCTG+GGG 0.652417 2:+693339 MsG0280006343.01.T01:CDS
ATACTGGATTGCTGTCGCCG+GGG 0.657042 2:+693254 MsG0280006343.01.T01:CDS
TGACTAGTATTCCCTCCGGA+AGG 0.658793 2:-693301 None:intergenic
GGTTGGATACTCCTTCCGGA+GGG 0.661578 2:+693290 MsG0280006343.01.T01:CDS
TTAGCATAATCCCATTCTCG+AGG 0.664741 2:-693486 None:intergenic
GGGTTGGATACTCCTTCCGG+AGG 0.665412 2:+693289 MsG0280006343.01.T01:CDS
ATCACCCCACGATCGAACCG+CGG 0.669715 2:-692921 None:intergenic
GGGCTGTGGATGGAAGCACT+TGG 0.685457 2:+693048 MsG0280006343.01.T01:intron
TCTCGAGTCACGAAAAGCCG+CGG 0.714087 2:+692904 MsG0280006343.01.T01:CDS
GCTTCCGTAGAATCCGATCG+AGG 0.738124 2:+692866 MsG0280006343.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTTAACGAAATTATAAAA+TGG - Chr2:693939-693958 None:intergenic 15.0%
!! TAAAACATAAAAGATTAAAC+AGG - Chr2:694033-694052 None:intergenic 15.0%
!!! ATCGAGAATTTTTTAAATTA+TGG + Chr2:693911-693930 MsG0280006343.01.T01:intron 15.0%
!!! TCGAGAATTTTTTAAATTAT+GGG + Chr2:693912-693931 MsG0280006343.01.T01:intron 15.0%
!! TTATTAGATATTTGTGCAAA+GGG - Chr2:694332-694351 None:intergenic 20.0%
!! TTTATTAGATATTTGTGCAA+AGG - Chr2:694333-694352 None:intergenic 20.0%
!!! GATCGATAAATTCAATTTTA+GGG - Chr2:693825-693844 None:intergenic 20.0%
!!! TGATCGATAAATTCAATTTT+AGG - Chr2:693826-693845 None:intergenic 20.0%
! AACAACATCACAATAATCAA+AGG - Chr2:694440-694459 None:intergenic 25.0%
! AACATTTCCTTACATATTTG+TGG + Chr2:693593-693612 MsG0280006343.01.T01:intron 25.0%
! AATTTCAAGGACTAAATTGA+CGG - Chr2:693872-693891 None:intergenic 25.0%
! ACAACATCACAATAATCAAA+GGG - Chr2:694439-694458 None:intergenic 25.0%
! ATGAATCACAAATATAGTTC+TGG - Chr2:693993-694012 None:intergenic 25.0%
! ATTATGATAAGCTTGAAGAA+AGG + Chr2:693416-693435 MsG0280006343.01.T01:CDS 25.0%
! CTTATAAGATAATCCTCAAT+GGG + Chr2:693386-693405 MsG0280006343.01.T01:CDS 25.0%
! TTAACGAATAAATACTCTGA+AGG + Chr2:693078-693097 MsG0280006343.01.T01:CDS 25.0%
! TTATGATAAGCTTGAAGAAA+GGG + Chr2:693417-693436 MsG0280006343.01.T01:CDS 25.0%
! TTTATTGTGGTTAATAGTGT+GGG + Chr2:694102-694121 MsG0280006343.01.T01:intron 25.0%
!! AGTTAACTTTGAAAGTTAGT+AGG + Chr2:693638-693657 MsG0280006343.01.T01:intron 25.0%
!! ATAAGGCATTAAAGTCAATA+TGG - Chr2:694240-694259 None:intergenic 25.0%
!! CAGAGTATTTATTCGTTAAA+TGG - Chr2:693077-693096 None:intergenic 25.0%
!! GATTAACTTGAAAGTGTATA+AGG - Chr2:694257-694276 None:intergenic 25.0%
!! GTTAACTTTGAAAGTTAGTA+GGG + Chr2:693639-693658 MsG0280006343.01.T01:intron 25.0%
!! TAGATTTCAGTTTGACTTAA+TGG + Chr2:694071-694090 MsG0280006343.01.T01:intron 25.0%
!!! ATATAGTTCTGGAAATTGTA+TGG - Chr2:693982-694001 None:intergenic 25.0%
!!! ATTTTCTGTAATTTCTGGAT+GGG + Chr2:694287-694306 MsG0280006343.01.T01:intron 25.0%
!!! GGTATAATTTTTTATCGGAA+GGG + Chr2:694498-694517 MsG0280006343.01.T01:intron 25.0%
!!! TGGTATAATTTTTTATCGGA+AGG + Chr2:694497-694516 MsG0280006343.01.T01:intron 25.0%
!!! TGTTGTTTTCTTTAACAGTA+TGG + Chr2:694385-694404 MsG0280006343.01.T01:intron 25.0%
!!! TTCTGAGAATTTTGTTTGTA+GGG + Chr2:693028-693047 MsG0280006343.01.T01:intron 25.0%
AGTCCTTGAAATTGTTCTTT+AGG + Chr2:693879-693898 MsG0280006343.01.T01:intron 30.0%
ATAAAAAATTATACCACCCC+TGG - Chr2:694493-694512 None:intergenic 30.0%
ATCTATATCAGCATGTGTAT+TGG - Chr2:694056-694075 None:intergenic 30.0%
ATGGATATTATACTCCGAAT+GGG + Chr2:693323-693342 MsG0280006343.01.T01:CDS 30.0%
ATTACAGAAAATGACCAACT+AGG - Chr2:694279-694298 None:intergenic 30.0%
CACACTATTAACCACAATAA+AGG - Chr2:694103-694122 None:intergenic 30.0%
CATAATCATAAAACCCATTG+AGG - Chr2:693402-693421 None:intergenic 30.0%
CTAAGATACTTATTTGTGGT+GGG + Chr2:693455-693474 MsG0280006343.01.T01:CDS 30.0%
CTTTATTGTGGTTAATAGTG+TGG + Chr2:694101-694120 MsG0280006343.01.T01:intron 30.0%
GCAATCAATAACAACAATGA+AGG - Chr2:693680-693699 None:intergenic 30.0%
GCTTATAAGATAATCCTCAA+TGG + Chr2:693385-693404 MsG0280006343.01.T01:CDS 30.0%
GTCCTTGAAATTGTTCTTTA+GGG + Chr2:693880-693899 MsG0280006343.01.T01:intron 30.0%
GTTGAAGAATTTCGTATTCT+AGG + Chr2:692782-692801 MsG0280006343.01.T01:CDS 30.0%
TAAAACTAGTAGACCACTAT+GGG - Chr2:694183-694202 None:intergenic 30.0%
TAATCTTGATCCTAAGTGTT+GGG + Chr2:693184-693203 MsG0280006343.01.T01:intron 30.0%
TCTAACTCCACAAATATGTA+AGG - Chr2:693603-693622 None:intergenic 30.0%
TCTATAATCTCGTATATAGC+AGG - Chr2:692967-692986 None:intergenic 30.0%
TTAAAACTAGTAGACCACTA+TGG - Chr2:694184-694203 None:intergenic 30.0%
TTAATCTTGATCCTAAGTGT+TGG + Chr2:693183-693202 MsG0280006343.01.T01:intron 30.0%
TTATCGATCACATTTGTAGT+AGG + Chr2:693836-693855 MsG0280006343.01.T01:intron 30.0%
! ATAGATGAACTTTGTTGCTT+AGG - Chr2:693777-693796 None:intergenic 30.0%
! TCTTTAACAGTATGGTTTTC+TGG + Chr2:694393-694412 MsG0280006343.01.T01:intron 30.0%
!! ACTTTCAAGTTAATCCTAGT+TGG + Chr2:694262-694281 MsG0280006343.01.T01:intron 30.0%
!! CATTTTCTGTAATTTCTGGA+TGG + Chr2:694286-694305 MsG0280006343.01.T01:intron 30.0%
!! CTTCTGAGAATTTTGTTTGT+AGG + Chr2:693027-693046 MsG0280006343.01.T01:intron 30.0%
!! TGGTCATTTTCTGTAATTTC+TGG + Chr2:694282-694301 MsG0280006343.01.T01:intron 30.0%
!!! GGGGTGGTATAATTTTTTAT+CGG + Chr2:694493-694512 MsG0280006343.01.T01:intron 30.0%
AGACATGTTGCAGATAAATG+TGG + Chr2:693513-693532 MsG0280006343.01.T01:CDS 35.0%
ATTTGTGCAAAGGGCAATAA+TGG - Chr2:694323-694342 None:intergenic 35.0%
CATGGATATTATACTCCGAA+TGG + Chr2:693322-693341 MsG0280006343.01.T01:CDS 35.0%
CCACAAACAGAGAAAGAAAA+CGG + Chr2:692713-692732 MsG0280006343.01.T01:CDS 35.0%
CCACCACAAATAAGTATCTT+AGG - Chr2:693457-693476 None:intergenic 35.0%
CCTAAGATACTTATTTGTGG+TGG + Chr2:693454-693473 MsG0280006343.01.T01:CDS 35.0%
CGTCCTAAGATACTTATTTG+TGG + Chr2:693451-693470 MsG0280006343.01.T01:CDS 35.0%
GTCCCTAAAGAACAATTTCA+AGG - Chr2:693885-693904 None:intergenic 35.0%
TAAATGTGGAGCTGTGTTAT+TGG + Chr2:693527-693546 MsG0280006343.01.T01:CDS 35.0%
TAAGGAAATGTTTCACACCT+TGG - Chr2:693585-693604 None:intergenic 35.0%
TCTATCATCTTCATCGTTGT+TGG - Chr2:692759-692778 None:intergenic 35.0%
! AATCTTGATCCTAAGTGTTG+GGG + Chr2:693185-693204 MsG0280006343.01.T01:intron 35.0%
! ACTAAATTGACGGATCGAAA+AGG - Chr2:693862-693881 None:intergenic 35.0%
! ATGAACTTTGTTGCTTAGGA+TGG - Chr2:693773-693792 None:intergenic 35.0%
!! AGAGAAAAGCGTCAATTCAA+AGG + Chr2:692990-693009 MsG0280006343.01.T01:intron 35.0%
!! GAGAAAAGCGTCAATTCAAA+GGG + Chr2:692991-693010 MsG0280006343.01.T01:intron 35.0%
!! GCTAATTTTGCTGTGTATAC+TGG + Chr2:693238-693257 MsG0280006343.01.T01:CDS 35.0%
AATGGCAGAGTCCTTTATTG+TGG + Chr2:694089-694108 MsG0280006343.01.T01:intron 40.0%
AGAGACTCGATATCACTATC+TGG + Chr2:694155-694174 MsG0280006343.01.T01:intron 40.0%
AGAGGGATACTTCTTACTCA+GGG + Chr2:694537-694556 MsG0280006343.01.T01:intron 40.0%
AGCAAAATTAGCCGAAGTAC+AGG - Chr2:693230-693249 None:intergenic 40.0%
ATTGCACTTAGTCAACGAGT+TGG + Chr2:693695-693714 MsG0280006343.01.T01:intron 40.0%
CCAGAAACTTTCTTCCCATT+CGG - Chr2:693340-693359 None:intergenic 40.0%
CGAATGGGAAGAAAGTTTCT+GGG + Chr2:693338-693357 MsG0280006343.01.T01:CDS 40.0%
GAACAAAACCAAGGAAGAGA+GGG + Chr2:694520-694539 MsG0280006343.01.T01:intron 40.0%
GAATGGGAAGAAAGTTTCTG+GGG + Chr2:693339-693358 MsG0280006343.01.T01:CDS 40.0%
GGTTGTGATTGTAGAGGATT+CGG - Chr2:692840-692859 None:intergenic 40.0%
TCTCTTGGTTGTGATTGTAG+AGG - Chr2:692846-692865 None:intergenic 40.0%
TGCAGCATATTCCTGTACTT+CGG + Chr2:693216-693235 MsG0280006343.01.T01:intron 40.0%
TTAGCATAATCCCATTCTCG+AGG - Chr2:693489-693508 None:intergenic 40.0%
TTGCACTTAGTCAACGAGTT+GGG + Chr2:693696-693715 MsG0280006343.01.T01:intron 40.0%
! AAATACTCTGAAGGAATGCC+TGG + Chr2:693087-693106 MsG0280006343.01.T01:CDS 40.0%
! CCGTTTTCTTTCTCTGTTTG+TGG - Chr2:692716-692735 None:intergenic 40.0%
! CTTTGTTGCTTAGGATGGAA+TGG - Chr2:693768-693787 None:intergenic 40.0%
! TCAACGAGTTGGGCAATTAT+AGG + Chr2:693706-693725 MsG0280006343.01.T01:intron 40.0%
! TTCTGTAATTTCTGGATGGG+TGG + Chr2:694290-694309 MsG0280006343.01.T01:intron 40.0%
!! GAATTTTGTTTGTAGGGCTG+TGG + Chr2:693034-693053 MsG0280006343.01.T01:intron 40.0%
!! GGAGTTTTATCCTCGAGAAT+GGG + Chr2:693476-693495 MsG0280006343.01.T01:CDS 40.0%
AACCCCATAATTCTATCCCC+CGG - Chr2:693274-693293 None:intergenic 45.0%
AAGTTAGTAGGGCTTGTGTC+TGG + Chr2:693650-693669 MsG0280006343.01.T01:intron 45.0%
ACAACTCACAAGAGTCTTCG+AGG + Chr2:694466-694485 MsG0280006343.01.T01:intron 45.0%
ACATTCACACCCCAACACTT+AGG - Chr2:693197-693216 None:intergenic 45.0%
ATCACCTCGATCGGATTCTA+CGG - Chr2:692873-692892 None:intergenic 45.0%
ATCGGAAGGGAACAAAACCA+AGG + Chr2:694511-694530 MsG0280006343.01.T01:intron 45.0%
CCGAATGGGAAGAAAGTTTC+TGG + Chr2:693337-693356 MsG0280006343.01.T01:CDS 45.0%
GAGAGGGATACTTCTTACTC+AGG + Chr2:694536-694555 MsG0280006343.01.T01:intron 45.0%
GGAACAAAACCAAGGAAGAG+AGG + Chr2:694519-694538 MsG0280006343.01.T01:intron 45.0%
GTGACATGGCTCAGATTAGT+GGG + Chr2:693549-693568 MsG0280006343.01.T01:intron 45.0%
GTGGTTAATAGTGTGGGTCA+TGG + Chr2:694108-694127 MsG0280006343.01.T01:intron 45.0%
TCACTATCTGGATCCCATAG+TGG + Chr2:694167-694186 MsG0280006343.01.T01:intron 45.0%
TCCATGACTAGTATTCCCTC+CGG - Chr2:693308-693327 None:intergenic 45.0%
TTTCGTGACTCGAGATCAAG+TGG - Chr2:692899-692918 None:intergenic 45.0%
TTTGTTTGTAGGGCTGTGGA+TGG + Chr2:693038-693057 MsG0280006343.01.T01:intron 45.0%
! GAGCTGTGTTATTGGTGACA+TGG + Chr2:693535-693554 MsG0280006343.01.T01:intron 45.0%
!! AGAAGTATCCCTCTCTTCCT+TGG - Chr2:694531-694550 None:intergenic 45.0%
!! GGGAGTTTTATCCTCGAGAA+TGG + Chr2:693475-693494 MsG0280006343.01.T01:CDS 45.0%
!! TATGGTTTTCTGGTCCTTGC+AGG + Chr2:694403-694422 MsG0280006343.01.T01:intron 45.0%
AAGTGGACGATCACCTCGAT+CGG - Chr2:692882-692901 None:intergenic 50.0%
ACAAGAGTCTTCGAGGTCCA+GGG + Chr2:694473-694492 MsG0280006343.01.T01:intron 50.0%
ATGCCTGGTGCACGTTACTA+TGG + Chr2:693102-693121 MsG0280006343.01.T01:CDS 50.0%
ATGGGGTTGGATACTCCTTC+CGG + Chr2:693286-693305 MsG0280006343.01.T01:CDS 50.0%
GGATTCTACGGAAGCTCTCT+TGG - Chr2:692861-692880 None:intergenic 50.0%
GGGGGATAGAATTATGGGGT+TGG + Chr2:693273-693292 MsG0280006343.01.T01:CDS 50.0%
GGTGACATGGCTCAGATTAG+TGG + Chr2:693548-693567 MsG0280006343.01.T01:intron 50.0%
GTATACTGGATTGCTGTCGC+CGG + Chr2:693252-693271 MsG0280006343.01.T01:CDS 50.0%
TATACTGGATTGCTGTCGCC+GGG + Chr2:693253-693272 MsG0280006343.01.T01:CDS 50.0%
TCCGGAGGGAATACTAGTCA+TGG + Chr2:693304-693323 MsG0280006343.01.T01:CDS 50.0%
TCGCCGGGGGATAGAATTAT+GGG + Chr2:693268-693287 MsG0280006343.01.T01:CDS 50.0%
TGACTAGTATTCCCTCCGGA+AGG - Chr2:693304-693323 None:intergenic 50.0%
!! TAGTGGGCTAATTGCAGCCA+AGG + Chr2:693565-693584 MsG0280006343.01.T01:intron 50.0%
AAAAGCCGCGGTTCGATCGT+GGG + Chr2:692916-692935 MsG0280006343.01.T01:CDS 55.0%
AGGGTTCACACACTCCTGCA+AGG - Chr2:694420-694439 None:intergenic 55.0%
ATACTGGATTGCTGTCGCCG+GGG + Chr2:693254-693273 MsG0280006343.01.T01:CDS 55.0%
CAAGAGTCTTCGAGGTCCAG+GGG + Chr2:694474-694493 MsG0280006343.01.T01:intron 55.0%
CACAAGAGTCTTCGAGGTCC+AGG + Chr2:694472-694491 MsG0280006343.01.T01:intron 55.0%
CCACCATAGTAACGTGCACC+AGG - Chr2:693108-693127 None:intergenic 55.0%
CCTGGTGCACGTTACTATGG+TGG + Chr2:693105-693124 MsG0280006343.01.T01:intron 55.0%
CGCCGGGGGATAGAATTATG+GGG + Chr2:693269-693288 MsG0280006343.01.T01:CDS 55.0%
GCTTCCGTAGAATCCGATCG+AGG + Chr2:692866-692885 MsG0280006343.01.T01:CDS 55.0%
GGTTGGATACTCCTTCCGGA+GGG + Chr2:693290-693309 MsG0280006343.01.T01:CDS 55.0%
GTCGCCGGGGGATAGAATTA+TGG + Chr2:693267-693286 MsG0280006343.01.T01:CDS 55.0%
GTGATCACCCTTACAGGCAG+CGG + Chr2:692939-692958 MsG0280006343.01.T01:intron 55.0%
TCTCGAGTCACGAAAAGCCG+CGG + Chr2:692904-692923 MsG0280006343.01.T01:CDS 55.0%
AAAGCCGCGGTTCGATCGTG+GGG + Chr2:692917-692936 MsG0280006343.01.T01:CDS 60.0%
AGCAGGATCCGCTGCCTGTA+AGG - Chr2:692950-692969 None:intergenic 60.0%
ATCACCCCACGATCGAACCG+CGG - Chr2:692924-692943 None:intergenic 60.0%
CCAAAGCACGCTCGCAGCAA+GGG - Chr2:693157-693176 None:intergenic 60.0%
CGTGGGGTGATCACCCTTAC+AGG + Chr2:692933-692952 MsG0280006343.01.T01:intron 60.0%
GAAAAGCCGCGGTTCGATCG+TGG + Chr2:692915-692934 MsG0280006343.01.T01:CDS 60.0%
GCAGGATCCGCTGCCTGTAA+GGG - Chr2:692949-692968 None:intergenic 60.0%
GGGTTGGATACTCCTTCCGG+AGG + Chr2:693289-693308 MsG0280006343.01.T01:CDS 60.0%
TACTGGATTGCTGTCGCCGG+GGG + Chr2:693255-693274 MsG0280006343.01.T01:CDS 60.0%
!! GGGCTGTGGATGGAAGCACT+TGG + Chr2:693048-693067 MsG0280006343.01.T01:intron 60.0%
CCCTTGCTGCGAGCGTGCTT+TGG + Chr2:693154-693173 MsG0280006343.01.T01:intron 65.0%
GAGTCTTCGAGGTCCAGGGG+TGG + Chr2:694477-694496 MsG0280006343.01.T01:intron 65.0%
GCCAAAGCACGCTCGCAGCA+AGG - Chr2:693158-693177 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 692707 694589 692707 ID=MsG0280006343.01;Name=MsG0280006343.01
Chr2 mRNA 692707 694589 692707 ID=MsG0280006343.01.T01;Parent=MsG0280006343.01;Name=MsG0280006343.01.T01;_AED=0.40;_eAED=0.66;_QI=0|0|0|1|1|1|5|0|211
Chr2 exon 692707 692938 692707 ID=MsG0280006343.01.T01:exon:804;Parent=MsG0280006343.01.T01
Chr2 exon 693049 693123 693049 ID=MsG0280006343.01.T01:exon:805;Parent=MsG0280006343.01.T01
Chr2 exon 693221 693548 693221 ID=MsG0280006343.01.T01:exon:806;Parent=MsG0280006343.01.T01
Chr2 exon 694589 694589 694589 ID=MsG0280006343.01.T01:exon:807;Parent=MsG0280006343.01.T01
Chr2 CDS 692707 692938 692707 ID=MsG0280006343.01.T01:cds;Parent=MsG0280006343.01.T01
Chr2 CDS 693049 693123 693049 ID=MsG0280006343.01.T01:cds;Parent=MsG0280006343.01.T01
Chr2 CDS 693221 693548 693221 ID=MsG0280006343.01.T01:cds;Parent=MsG0280006343.01.T01
Chr2 CDS 694589 694589 694589 ID=MsG0280006343.01.T01:cds;Parent=MsG0280006343.01.T01
Gene Sequence

>MsG0280006343.01.T01

ATGGAACCACAAACAGAGAAAGAAAACGGTAACGCTATCGATATCGAATCCAACAACGATGAAGATGATAGAGAAGTTGAAGAATTTCGTATTCTAGGTCATTCAATGTGTATCAAAAGACGAAGAGATTCCGAATCCTCTACAATCACAACCAAGAGAGCTTCCGTAGAATCCGATCGAGGTGATCGTCCACTTGATCTCGAGTCACGAAAAGCCGCGGTTCGATCGTGGGGGCTGTGGATGGAAGCACTTGGAAGCCATTTAACGAATAAATACTCTGAAGGAATGCCTGGTGCACGTTACTATGCATATTCCTGTACTTCGGCTAATTTTGCTGTGTATACTGGATTGCTGTCGCCGGGGGATAGAATTATGGGGTTGGATACTCCTTCCGGAGGGAATACTAGTCATGGATATTATACTCCGAATGGGAAGAAAGTTTCTGGGGCTTCAATATTCTTTGAGAGTTTAGCTTATAAGATAATCCTCAATGGGTTTTATGATTATGATAAGCTTGAAGAAAGGGCACTTGATTTTCGTCCTAAGATACTTATTTGTGGTGGGAGTTTTATCCTCGAGAATGGGATTATGCTAAGTTTAGACATGTTGCAGATAAATGTGGAGCTGTGTTATTGA
Protein sequence

>MsG0280006343.01.T01

MEPQTEKENGNAIDIESNNDEDDREVEEFRILGHSMCIKRRRDSESSTITTKRASVESDRGDRPLDLESRKAAVRSWGLWMEALGSHLTNKYSEGMPGARYYAYSCTSANFAVYTGLLSPGDRIMGLDTPSGGNTSHGYYTPNGKKVSGASIFFESLAYKIILNGFYDYDKLEERALDFRPKILICGGSFILENGIMLSLDMLQINVELCY*