AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006352.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006352.01.T01 MTR_2g006750 90.291 412 9 2 4 413 666 1048 0.0 745
MsG0280006352.01.T01 MTR_8g085950 22.546 377 223 9 18 362 725 1064 1.91e-15 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006352.01.T01 AT4G27640 63.107 412 121 2 4 413 666 1048 1.38e-174 515

Find 91 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAATCATGTTAAGCTATT+TGG 0.127080 2:+797302 None:intergenic
CAGGAAATCACCTGATTTAA+AGG 0.233883 2:-799780 None:intergenic
CGTGGGCTTCATCCCCTATT+TGG 0.246863 2:+799675 MsG0280006352.01.T01:CDS
CAGGCTCAGACTCACCAAAT+AGG 0.272531 2:-799689 None:intergenic
TGTCATCTAATTTCATTATA+CGG 0.281048 2:+800257 MsG0280006352.01.T01:CDS
AAATGCAGCATTTCTTCTAT+TGG 0.285103 2:-799384 None:intergenic
GCTGACATCATTCGAGATTA+TGG 0.303118 2:+798716 MsG0280006352.01.T01:CDS
AGGCTCAGACTCACCAAATA+GGG 0.323449 2:-799688 None:intergenic
AGATGATTACCGCCATTATC+AGG 0.344847 2:+800472 MsG0280006352.01.T01:three_prime_UTR
GACAATAGTATGCACAAAAC+TGG 0.345384 2:-800850 None:intergenic
TCATGGAGATGTCAGACTTC+AGG 0.354911 2:+797365 MsG0280006352.01.T01:CDS
ACAACCATGGTCTTATCTTC+AGG 0.360489 2:-799158 None:intergenic
ATAGTTTATGTGGAGATGTT+TGG 0.376249 2:+800443 MsG0280006352.01.T01:three_prime_UTR
TGCACACGATGAAGTACTTA+TGG 0.377610 2:+798937 MsG0280006352.01.T01:CDS
AGAAGACCACGAGGAGTCTA+TGG 0.379101 2:+799981 MsG0280006352.01.T01:CDS
TTGACTTCAGATGTCTCAAT+AGG 0.379544 2:-800212 None:intergenic
CAATTTGTTCTTTCATTGCA+TGG 0.394674 2:-800359 None:intergenic
CCCTGCATTTGCAAAGTCCA+TGG 0.395898 2:+798979 MsG0280006352.01.T01:CDS
GGAGTCTATTCCTTTAAATC+AGG 0.398042 2:+799770 MsG0280006352.01.T01:CDS
TCCTCGTGGTCTTCTTTCAA+TGG 0.398806 2:-799973 None:intergenic
TCGTCCTACCAACCTGATAA+TGG 0.405493 2:-800484 None:intergenic
TGCAACTTCATTGTTGCTCC+AGG 0.414389 2:+798859 MsG0280006352.01.T01:CDS
TGATAGGTAAAACAAAGAAT+TGG 0.415083 2:-800392 None:intergenic
ACATCCACATAGACTGCAAT+TGG 0.418514 2:-799218 None:intergenic
TGCTGTGGCAAGGATGATTA+TGG 0.421198 2:+799740 MsG0280006352.01.T01:CDS
GCTGACAAGCAGATTGCTCC+TGG 0.436344 2:-798877 None:intergenic
GGAGGAGACACTAAGAATCT+TGG 0.437426 2:+797323 MsG0280006352.01.T01:CDS
GGAAGAACTCTCATGAAAAC+AGG 0.438044 2:-799952 None:intergenic
CCCATGGACTTTGCAAATGC+AGG 0.442153 2:-798980 None:intergenic
TTCTCAGCGTGTGATGCCTT+TGG 0.442516 2:+799331 MsG0280006352.01.T01:intron
TTTCTTCTATTGGTTGCCTC+AGG 0.445083 2:-799374 None:intergenic
TTATCCCTCACCGCATCATC+AGG 0.445145 2:-799708 None:intergenic
CAACTTTCACCCCTCCAAAC+TGG 0.445375 2:-800766 None:intergenic
AATCATGTTAAGCTATTTGG+AGG 0.446552 2:+797305 None:intergenic
CTGAGCAATTTCCGCAAGGC+AGG 0.461045 2:-799183 None:intergenic
GTCACGTTATATAGTTTATG+TGG 0.461667 2:+800433 MsG0280006352.01.T01:three_prime_UTR
GAAGTTGCATGAACAAGCTT+GGG 0.470055 2:-798845 None:intergenic
TGCTTGTCAGCTGCAAGAAT+CGG 0.470998 2:+798889 MsG0280006352.01.T01:CDS
TGAAGTTGCATGAACAAGCT+TGG 0.478733 2:-798846 None:intergenic
TTGTATCCTCGAGGTTTATG+TGG 0.484820 2:+800786 MsG0280006352.01.T01:three_prime_UTR
TTTGGCTTTGGAAGATTGCA+TGG 0.486787 2:-797877 None:intergenic
AGAAACAATTACCAGTGGAT+TGG 0.492221 2:-800040 None:intergenic
CAACCATGGTCTTATCTTCA+GGG 0.494687 2:-799157 None:intergenic
TGCGGAAATTGCTCAGAACA+TGG 0.498382 2:+799190 MsG0280006352.01.T01:CDS
TCTGAAGTCAAAGCTCTAGT+AGG 0.498778 2:+800224 MsG0280006352.01.T01:CDS
CTAATTCAGGGATAAGAGAA+TGG 0.502855 2:-800160 None:intergenic
CTGGTGAAAGGTTGCTCAGA+AGG 0.504882 2:-800295 None:intergenic
TGACAAGGAAGTGGTTGCTC+AGG 0.517864 2:+798679 MsG0280006352.01.T01:CDS
CCTGCATTTGCAAAGTCCAT+GGG 0.521311 2:+798980 MsG0280006352.01.T01:CDS
ATAATGTGGAGGAAAAGAAA+AGG 0.528785 2:-800719 None:intergenic
ATAATATATCACATATAACT+TGG 0.553675 2:-800827 None:intergenic
TGCTCAGGCTTGCACTAATG+TGG 0.554091 2:+798694 MsG0280006352.01.T01:CDS
TGGAGCAAATTGAGCACCCA+TGG 0.561801 2:-798996 None:intergenic
TGTATTCTCATCCAATCCAC+TGG 0.562007 2:+800029 MsG0280006352.01.T01:CDS
GATAATGCATGTGCGTGTGC+TGG 0.567396 2:-800314 None:intergenic
GATTTAAAGGAATAGACTCC+GGG 0.568085 2:-799767 None:intergenic
TTGGCTTTGGAAGATTGCAT+GGG 0.569039 2:-797876 None:intergenic
CATGTGCGTGTGCTGGTGAA+AGG 0.571732 2:-800307 None:intergenic
TGGTGAAAGGTTGCTCAGAA+GGG 0.572553 2:-800294 None:intergenic
GCGGAAATTGCTCAGAACAT+GGG 0.584153 2:+799191 MsG0280006352.01.T01:CDS
AAAATCTAGAAGGCACTGAA+AGG 0.590472 2:-800618 None:intergenic
CCATGGACTTTGCAAATGCA+GGG 0.592427 2:-798979 None:intergenic
GCTAATTCTTTAAGCACCAA+AGG 0.597184 2:-799347 None:intergenic
TGATTTAAAGGAATAGACTC+CGG 0.603430 2:-799768 None:intergenic
AAGGATGATTATGGTGCACC+CGG 0.607978 2:+799749 MsG0280006352.01.T01:CDS
ATGCAGCTGGTGCTGTGGCA+AGG 0.614771 2:+799730 MsG0280006352.01.T01:CDS
CGCAAGGCAGGCAACAACCA+TGG 0.615081 2:-799171 None:intergenic
AACCATGGTCTTATCTTCAG+GGG 0.618798 2:-799156 None:intergenic
TGATGATGATGACAAGGAAG+TGG 0.619486 2:+798670 MsG0280006352.01.T01:CDS
GCGGTGAGGGATAATGCAGC+TGG 0.622050 2:+799717 MsG0280006352.01.T01:CDS
TATTATGACAATATATTACG+TGG 0.622485 2:+799657 MsG0280006352.01.T01:CDS
TGAGCCTGATGATGCGGTGA+GGG 0.625406 2:+799704 MsG0280006352.01.T01:CDS
GGCTCAGACTCACCAAATAG+GGG 0.649271 2:-799687 None:intergenic
TGTTCTGAGCAATTTCCGCA+AGG 0.652109 2:-799187 None:intergenic
ATTATGACAATATATTACGT+GGG 0.655447 2:+799658 MsG0280006352.01.T01:CDS
TTATGTGGAGATGTTTGGCA+TGG 0.658547 2:+800448 MsG0280006352.01.T01:three_prime_UTR
CAATCACTGCTTTAAAACGT+CGG 0.660221 2:+797388 MsG0280006352.01.T01:CDS
CTGAGCCTGATGATGCGGTG+AGG 0.660869 2:+799703 MsG0280006352.01.T01:CDS
CATGGTTGTTGCCTGCCTTG+CGG 0.671102 2:+799172 MsG0280006352.01.T01:CDS
GGTGAAAGGTTGCTCAGAAG+GGG 0.671505 2:-800293 None:intergenic
GGGTGAAAGTTGTATCCTCG+AGG 0.681264 2:+800777 MsG0280006352.01.T01:three_prime_UTR
ACCATGGTCTTATCTTCAGG+GGG 0.682309 2:-799155 None:intergenic
GGATAATGCAGCTGGTGCTG+TGG 0.692825 2:+799725 MsG0280006352.01.T01:CDS
TGAGTCTGAGCCTGATGATG+CGG 0.695043 2:+799698 MsG0280006352.01.T01:CDS
TAAAGAATTAGCGTCACCTG+AGG 0.697519 2:+799358 MsG0280006352.01.T01:CDS
TCCTACCAACCTGATAATGG+CGG 0.700464 2:-800481 None:intergenic
TATGGTTGATGATGATGACA+AGG 0.706754 2:+798664 MsG0280006352.01.T01:CDS
AATTCTCCACATAAACCTCG+AGG 0.707075 2:-800792 None:intergenic
AGACAGCCATAGACTCCTCG+TGG 0.713695 2:-799987 None:intergenic
AGAATCTTGGTCAAACACTG+TGG 0.727826 2:+797336 MsG0280006352.01.T01:CDS
TCCATTGAAAGAAGACCACG+AGG 0.760828 2:+799972 MsG0280006352.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATTATAAATAAAACTG+AGG - Chr2:797804-797823 None:intergenic 10.0%
!! ATAATATATCACATATAACT+TGG - Chr2:800830-800849 None:intergenic 15.0%
!! CAAAAATATTAACTAATTCA+GGG - Chr2:800175-800194 None:intergenic 15.0%
!!! AATAAGAACAATTTTAAACA+TGG - Chr2:797574-797593 None:intergenic 15.0%
!!! AATTTTGTTGTTTATACTTA+TGG + Chr2:799869-799888 MsG0280006352.01.T01:intron 15.0%
!!! ACTAATCTTTCTATTATTTT+AGG + Chr2:799486-799505 MsG0280006352.01.T01:intron 15.0%
!!! CAAATGTTCATTTTTTAAAA+AGG - Chr2:797947-797966 None:intergenic 15.0%
!!! TTATTTATTTTTCCATACTT+AGG + Chr2:798004-798023 MsG0280006352.01.T01:intron 15.0%
!!! TTCATTTTTTAAAAAGGAAA+AGG - Chr2:797941-797960 None:intergenic 15.0%
!! AAAAATGGACAAACATAATT+AGG - Chr2:800125-800144 None:intergenic 20.0%
!! AACATCAAAAATTCATAATG+TGG - Chr2:800736-800755 None:intergenic 20.0%
!! ATCTGCAATACATTTAAAAA+TGG - Chr2:800140-800159 None:intergenic 20.0%
!! ATTAGTGTATATCAATCAAA+TGG - Chr2:799472-799491 None:intergenic 20.0%
!! ATTATGACAATATATTACGT+GGG + Chr2:799658-799677 MsG0280006352.01.T01:CDS 20.0%
!! ATTGTCATAATATCTAGTAT+TGG - Chr2:799649-799668 None:intergenic 20.0%
!! GCAAAAATATTAACTAATTC+AGG - Chr2:800176-800195 None:intergenic 20.0%
!! TATTATGACAATATATTACG+TGG + Chr2:799657-799676 MsG0280006352.01.T01:CDS 20.0%
!! TCAAATAGTTGTTCAAAAAT+TGG - Chr2:799019-799038 None:intergenic 20.0%
!! TGTCATCTAATTTCATTATA+CGG + Chr2:800257-800276 MsG0280006352.01.T01:CDS 20.0%
!! TTCTTCAAAAAATACTTGAT+AGG - Chr2:800411-800430 None:intergenic 20.0%
!!! TATTATTTTAGGTTAGCTTA+TGG + Chr2:799497-799516 MsG0280006352.01.T01:intron 20.0%
!!! TGTAATTCTGTTTCTTATTT+TGG + Chr2:799238-799257 MsG0280006352.01.T01:intron 20.0%
!!! TTTTCAAAAGTAATTGTTTG+TGG + Chr2:797523-797542 MsG0280006352.01.T01:CDS 20.0%
!!! TTTTGAATGGATATAAGATA+TGG - Chr2:797654-797673 None:intergenic 20.0%
!!! TTTTGACTTTAGTAAGAAAA+AGG - Chr2:798475-798494 None:intergenic 20.0%
! AAAAAGCAACAATTTAGACA+AGG - Chr2:800520-800539 None:intergenic 25.0%
! AAAATAACATTAGACGGTAT+AGG - Chr2:798782-798801 None:intergenic 25.0%
! AAAGGTGAAATGATAAAAGA+AGG - Chr2:797923-797942 None:intergenic 25.0%
! AATACAAGATATACTAGTAC+AGG - Chr2:799617-799636 None:intergenic 25.0%
! AGGTAAAGTATAATGTAGAA+TGG - Chr2:797723-797742 None:intergenic 25.0%
! ATCAAAAATTCATAATGTGG+AGG - Chr2:800733-800752 None:intergenic 25.0%
! ATGAATCGTCATGAATTAAA+AGG - Chr2:797743-797762 None:intergenic 25.0%
! CAAATAATTCTATGCTTACA+TGG - Chr2:798758-798777 None:intergenic 25.0%
! CTCCAAAATAAAAATCTAGA+AGG - Chr2:800631-800650 None:intergenic 25.0%
! GAATTTAAATGTTTGCTCTT+TGG + Chr2:798442-798461 MsG0280006352.01.T01:intron 25.0%
! TAAAACTCTATACCTAAGTA+TGG - Chr2:798019-798038 None:intergenic 25.0%
! TATTGTCGTATACTATTATG+TGG - Chr2:798411-798430 None:intergenic 25.0%
! TCAGCAAAAATAACATTAGA+CGG - Chr2:798788-798807 None:intergenic 25.0%
! TGAAATGATAAAAGAAGGAA+GGG - Chr2:797918-797937 None:intergenic 25.0%
! TGATAGGTAAAACAAAGAAT+TGG - Chr2:800395-800414 None:intergenic 25.0%
!! CATAAATATTTTTCCAGACT+CGG - Chr2:798565-798584 None:intergenic 25.0%
!! CTTCTAACTGTAAAACATTT+TGG - Chr2:799073-799092 None:intergenic 25.0%
!! GAATATTTTCATCAAGACTA+TGG + Chr2:798646-798665 MsG0280006352.01.T01:CDS 25.0%
!! TGTTAATTACCATTGTTTCT+TGG + Chr2:797965-797984 MsG0280006352.01.T01:intron 25.0%
!!! ACTTTTTCTAGATTTCTAGT+TGG - Chr2:798346-798365 None:intergenic 25.0%
!!! AGTTAATATTTTTGCTCAAG+TGG + Chr2:800181-800200 MsG0280006352.01.T01:CDS 25.0%
!!! GCTTATATTTTTTGAATGGA+TGG + Chr2:799525-799544 MsG0280006352.01.T01:intron 25.0%
!!! TGCCTTCTAGATTTTTATTT+TGG + Chr2:800626-800645 MsG0280006352.01.T01:three_prime_UTR 25.0%
AAATGCAGCATTTCTTCTAT+TGG - Chr2:799387-799406 None:intergenic 30.0%
AACAATTTAGACAAGGTTGT+TGG - Chr2:800513-800532 None:intergenic 30.0%
AAGGTGTAATGTGTTTGTAT+GGG - Chr2:797617-797636 None:intergenic 30.0%
AATGGATATAAGATATGGCA+TGG - Chr2:797649-797668 None:intergenic 30.0%
ACAATTTAGACAAGGTTGTT+GGG - Chr2:800512-800531 None:intergenic 30.0%
ATAATGTGGAGGAAAAGAAA+AGG - Chr2:800722-800741 None:intergenic 30.0%
ATAGTTTATGTGGAGATGTT+TGG + Chr2:800443-800462 MsG0280006352.01.T01:three_prime_UTR 30.0%
ATATCCATTCAAAATCAACG+AGG + Chr2:797660-797679 MsG0280006352.01.T01:intron 30.0%
ATCAAACATCTTACGTATGA+TGG + Chr2:800562-800581 MsG0280006352.01.T01:intron 30.0%
ATGGACAAACATAATTAGGT+AGG - Chr2:800121-800140 None:intergenic 30.0%
GAAAAAGAAACAATTACCAG+TGG - Chr2:800048-800067 None:intergenic 30.0%
GATGTTGTCTACATATATCT+TGG + Chr2:799910-799929 MsG0280006352.01.T01:intron 30.0%
GTCACGTTATATAGTTTATG+TGG + Chr2:800433-800452 MsG0280006352.01.T01:three_prime_UTR 30.0%
GTGAAATGATAAAAGAAGGA+AGG - Chr2:797919-797938 None:intergenic 30.0%
TAGGATAATATTACTGCAGA+GGG - Chr2:800102-800121 None:intergenic 30.0%
TGATGAAATTTGCAGTAAGT+TGG + Chr2:799044-799063 MsG0280006352.01.T01:intron 30.0%
TGATTTAAAGGAATAGACTC+CGG - Chr2:799771-799790 None:intergenic 30.0%
! ACCAAGAATTTCTTTTGCTT+TGG - Chr2:798531-798550 None:intergenic 30.0%
! ATGGCTAAATGTTTTCTCAT+TGG + Chr2:799888-799907 MsG0280006352.01.T01:intron 30.0%
! CAATTTGTTCTTTCATTGCA+TGG - Chr2:800362-800381 None:intergenic 30.0%
! GTTGATGTATGCAGTTTTTA+TGG + Chr2:799585-799604 MsG0280006352.01.T01:intron 30.0%
! TGTTTCATGCTTTTAATGCA+TGG + Chr2:797486-797505 MsG0280006352.01.T01:intron 30.0%
!! AAACACTGTGGTTATTTTCA+TGG + Chr2:797348-797367 MsG0280006352.01.T01:CDS 30.0%
!! AGAAGTGTTACAAATTAAGC+AGG - Chr2:799802-799821 None:intergenic 30.0%
!! GCTATTACTTTTATTCTTGC+AGG + Chr2:800584-800603 MsG0280006352.01.T01:intron 30.0%
!! TAATATTTTTGCTCAAGTGG+CGG + Chr2:800184-800203 MsG0280006352.01.T01:CDS 30.0%
!!! AGATTTTTATTTTGGAGTCC+AGG + Chr2:800634-800653 MsG0280006352.01.T01:three_prime_UTR 30.0%
!!! AGTGATTTACATTTTGGCTT+TGG - Chr2:797892-797911 None:intergenic 30.0%
!!! GCGTGCTTATATTTTTTGAA+TGG + Chr2:799521-799540 MsG0280006352.01.T01:intron 30.0%
!!! TGTTTTTGTTTTCACCAGTT+TGG + Chr2:800752-800771 MsG0280006352.01.T01:three_prime_UTR 30.0%
!!! TTTTCCTCGTTGATTTTGAA+TGG - Chr2:797667-797686 None:intergenic 30.0%
AACAGGAAGAACCTGTAAAA+CGG - Chr2:799938-799957 None:intergenic 35.0%
ACAGACTAAGAAACAAGAGT+AGG - Chr2:797469-797488 None:intergenic 35.0%
AGAAACAATTACCAGTGGAT+TGG - Chr2:800043-800062 None:intergenic 35.0%
ATCAAATGGATAGCACGAAA+AGG - Chr2:799458-799477 None:intergenic 35.0%
ATGTGTTTGTATGGGATTCT+TGG - Chr2:797609-797628 None:intergenic 35.0%
CAAAATCAACGAGGAAAAGA+AGG + Chr2:797669-797688 MsG0280006352.01.T01:intron 35.0%
CAAGAAAAAGAAGAGAATCC+TGG - Chr2:800655-800674 None:intergenic 35.0%
CAAGGTGTAATGTGTTTGTA+TGG - Chr2:797618-797637 None:intergenic 35.0%
CAGGAAATCACCTGATTTAA+AGG - Chr2:799783-799802 None:intergenic 35.0%
CTAATTCAGGGATAAGAGAA+TGG - Chr2:800163-800182 None:intergenic 35.0%
GATTTAAAGGAATAGACTCC+GGG - Chr2:799770-799789 None:intergenic 35.0%
GCCAAAGCAAAAGAAATTCT+TGG + Chr2:798527-798546 MsG0280006352.01.T01:intron 35.0%
GCTAATTCTTTAAGCACCAA+AGG - Chr2:799350-799369 None:intergenic 35.0%
GGAGTCTATTCCTTTAAATC+AGG + Chr2:799770-799789 MsG0280006352.01.T01:CDS 35.0%
GTAGGATAATATTACTGCAG+AGG - Chr2:800103-800122 None:intergenic 35.0%
TAGCAATTGTAGAAGCTTCT+GGG + Chr2:798210-798229 MsG0280006352.01.T01:intron 35.0%
TGTGTTTGTATGGGATTCTT+GGG - Chr2:797608-797627 None:intergenic 35.0%
TTGACTTCAGATGTCTCAAT+AGG - Chr2:800215-800234 None:intergenic 35.0%
! AGAAATGCTGCATTTTGTGT+TGG + Chr2:799392-799411 MsG0280006352.01.T01:CDS 35.0%
! ATATCTTGGTTCCGTTTTAC+AGG + Chr2:799924-799943 MsG0280006352.01.T01:intron 35.0%
! GTTGGAGAGTTTTGCAAAAA+TGG + Chr2:799410-799429 MsG0280006352.01.T01:CDS 35.0%
! TTTTCCAATTGCAGTCTATG+TGG + Chr2:799214-799233 MsG0280006352.01.T01:CDS 35.0%
!! AAAATCTAGAAGGCACTGAA+AGG - Chr2:800621-800640 None:intergenic 35.0%
!! CAATCACTGCTTTAAAACGT+CGG + Chr2:797388-797407 MsG0280006352.01.T01:CDS 35.0%
!! TATGGTTGATGATGATGACA+AGG + Chr2:798664-798683 MsG0280006352.01.T01:CDS 35.0%
!! TTTGTTTTCACCAGTTTGGA+GGG + Chr2:800756-800775 MsG0280006352.01.T01:three_prime_UTR 35.0%
!!! TTTTGTTTTCACCAGTTTGG+AGG + Chr2:800755-800774 MsG0280006352.01.T01:three_prime_UTR 35.0%
AAACACACCTCTCGTTTAGA+GGG + Chr2:798382-798401 MsG0280006352.01.T01:intron 40.0%
AATTCTCCACATAAACCTCG+AGG - Chr2:800795-800814 None:intergenic 40.0%
ACATCCACATAGACTGCAAT+TGG - Chr2:799221-799240 None:intergenic 40.0%
AGAATCTTGGTCAAACACTG+TGG + Chr2:797336-797355 MsG0280006352.01.T01:CDS 40.0%
AGATGATTACCGCCATTATC+AGG + Chr2:800472-800491 MsG0280006352.01.T01:three_prime_UTR 40.0%
CAATTGCTAGTCAGCTATAC+TGG - Chr2:798199-798218 None:intergenic 40.0%
CAATTGCTAGTCAGCTATTC+TGG - Chr2:798251-798270 None:intergenic 40.0%
CTAGCAATTGTAGAAGCTTC+TGG + Chr2:798209-798228 MsG0280006352.01.T01:intron 40.0%
GAAGTTGCATGAACAAGCTT+GGG - Chr2:798848-798867 None:intergenic 40.0%
GCTGACATCATTCGAGATTA+TGG + Chr2:798716-798735 MsG0280006352.01.T01:CDS 40.0%
GGAAGAACTCTCATGAAAAC+AGG - Chr2:799955-799974 None:intergenic 40.0%
TAAACACACCTCTCGTTTAG+AGG + Chr2:798381-798400 MsG0280006352.01.T01:intron 40.0%
TAAAGAATTAGCGTCACCTG+AGG + Chr2:799358-799377 MsG0280006352.01.T01:CDS 40.0%
TATGGCATGGTTTGAATGCA+AGG - Chr2:797636-797655 None:intergenic 40.0%
TCAAAGGGACCAAGAAACAA+TGG - Chr2:797977-797996 None:intergenic 40.0%
TGAAGTTGCATGAACAAGCT+TGG - Chr2:798849-798868 None:intergenic 40.0%
TGTATTCTCATCCAATCCAC+TGG + Chr2:800029-800048 MsG0280006352.01.T01:CDS 40.0%
TTATGTGGAGATGTTTGGCA+TGG + Chr2:800448-800467 MsG0280006352.01.T01:three_prime_UTR 40.0%
TTGTATCCTCGAGGTTTATG+TGG + Chr2:800786-800805 MsG0280006352.01.T01:three_prime_UTR 40.0%
! CTAGCAAGTGTAGAAGCTTT+TGG + Chr2:798291-798310 MsG0280006352.01.T01:intron 40.0%
! GGAGAGTTTTGCAAAAATGG+TGG + Chr2:799413-799432 MsG0280006352.01.T01:CDS 40.0%
! GGGAGCAGTGATTTACATTT+TGG - Chr2:797898-797917 None:intergenic 40.0%
! TCATGCTTTTAATGCATGGC+AGG + Chr2:797490-797509 MsG0280006352.01.T01:intron 40.0%
! TCTGAAGTCAAAGCTCTAGT+AGG + Chr2:800224-800243 MsG0280006352.01.T01:CDS 40.0%
! TGATGATGATGACAAGGAAG+TGG + Chr2:798670-798689 MsG0280006352.01.T01:CDS 40.0%
! TGCACACGATGAAGTACTTA+TGG + Chr2:798937-798956 MsG0280006352.01.T01:CDS 40.0%
! TTGTTTTCACCAGTTTGGAG+GGG + Chr2:800757-800776 MsG0280006352.01.T01:three_prime_UTR 40.0%
! TTTCTTCTATTGGTTGCCTC+AGG - Chr2:799377-799396 None:intergenic 40.0%
!! AACCATGGTCTTATCTTCAG+GGG - Chr2:799159-799178 None:intergenic 40.0%
!! ACAACCATGGTCTTATCTTC+AGG - Chr2:799161-799180 None:intergenic 40.0%
!! CAACCATGGTCTTATCTTCA+GGG - Chr2:799160-799179 None:intergenic 40.0%
!! TAGAAGCTTTTGGAAGCAAC+TGG + Chr2:798301-798320 MsG0280006352.01.T01:intron 40.0%
!! TTGGCTTTGGAAGATTGCAT+GGG - Chr2:797879-797898 None:intergenic 40.0%
!! TTTGGCTTTGGAAGATTGCA+TGG - Chr2:797880-797899 None:intergenic 40.0%
AAGGATGATTATGGTGCACC+CGG + Chr2:799749-799768 MsG0280006352.01.T01:CDS 45.0%
AGGCTCAGACTCACCAAATA+GGG - Chr2:799691-799710 None:intergenic 45.0%
CCATGGACTTTGCAAATGCA+GGG - Chr2:798982-799001 None:intergenic 45.0%
CCTGCATTTGCAAAGTCCAT+GGG + Chr2:798980-798999 MsG0280006352.01.T01:CDS 45.0%
GATTACCGCCATTATCAGGT+TGG + Chr2:800476-800495 MsG0280006352.01.T01:intron 45.0%
GCGGAAATTGCTCAGAACAT+GGG + Chr2:799191-799210 MsG0280006352.01.T01:CDS 45.0%
GGAGGAGACACTAAGAATCT+TGG + Chr2:797323-797342 MsG0280006352.01.T01:CDS 45.0%
GTGAGAACATTAACCGAGTC+TGG + Chr2:798549-798568 MsG0280006352.01.T01:intron 45.0%
TCATGGAGATGTCAGACTTC+AGG + Chr2:797365-797384 MsG0280006352.01.T01:CDS 45.0%
TCCATTGAAAGAAGACCACG+AGG + Chr2:799972-799991 MsG0280006352.01.T01:CDS 45.0%
TCCTCGTGGTCTTCTTTCAA+TGG - Chr2:799976-799995 None:intergenic 45.0%
TCGTCCTACCAACCTGATAA+TGG - Chr2:800487-800506 None:intergenic 45.0%
TGCAACTTCATTGTTGCTCC+AGG + Chr2:798859-798878 MsG0280006352.01.T01:CDS 45.0%
TGCGGAAATTGCTCAGAACA+TGG + Chr2:799190-799209 MsG0280006352.01.T01:CDS 45.0%
TGCTGTGGCAAGGATGATTA+TGG + Chr2:799740-799759 MsG0280006352.01.T01:CDS 45.0%
TGCTTGTCAGCTGCAAGAAT+CGG + Chr2:798889-798908 MsG0280006352.01.T01:CDS 45.0%
TGGTGAAAGGTTGCTCAGAA+GGG - Chr2:800297-800316 None:intergenic 45.0%
! TGTTCTGAGCAATTTCCGCA+AGG - Chr2:799190-799209 None:intergenic 45.0%
!! ACCATGGTCTTATCTTCAGG+GGG - Chr2:799158-799177 None:intergenic 45.0%
!! TCCTACCAACCTGATAATGG+CGG - Chr2:800484-800503 None:intergenic 45.0%
!! AATAAATAAAATAAAATCAA+AGG - Chr2:797993-798012 None:intergenic 5.0%
!! ATAAATAAAATAAAATCAAA+GGG - Chr2:797992-798011 None:intergenic 5.0%
AGAAGACCACGAGGAGTCTA+TGG + Chr2:799981-800000 MsG0280006352.01.T01:CDS 50.0%
AGCCCCGTCCTGAAAAGTAA+GGG - Chr2:798507-798526 None:intergenic 50.0%
CAACTTTCACCCCTCCAAAC+TGG - Chr2:800769-800788 None:intergenic 50.0%
CAGGCTCAGACTCACCAAAT+AGG - Chr2:799692-799711 None:intergenic 50.0%
CCCATGGACTTTGCAAATGC+AGG - Chr2:798983-799002 None:intergenic 50.0%
CCCTGCATTTGCAAAGTCCA+TGG + Chr2:798979-798998 MsG0280006352.01.T01:CDS 50.0%
CTGGTGAAAGGTTGCTCAGA+AGG - Chr2:800298-800317 None:intergenic 50.0%
GATAATGCATGTGCGTGTGC+TGG - Chr2:800317-800336 None:intergenic 50.0%
GGCTCAGACTCACCAAATAG+GGG - Chr2:799690-799709 None:intergenic 50.0%
GGGTGAAAGTTGTATCCTCG+AGG + Chr2:800777-800796 MsG0280006352.01.T01:three_prime_UTR 50.0%
GGTGAAAGGTTGCTCAGAAG+GGG - Chr2:800296-800315 None:intergenic 50.0%
TCCCCCTGAAGATAAGACCA+TGG + Chr2:799154-799173 MsG0280006352.01.T01:CDS 50.0%
TGAACAAGCTTGGGCAAGTC+TGG - Chr2:798839-798858 None:intergenic 50.0%
TGACAAGGAAGTGGTTGCTC+AGG + Chr2:798679-798698 MsG0280006352.01.T01:CDS 50.0%
TGCTCAGGCTTGCACTAATG+TGG + Chr2:798694-798713 MsG0280006352.01.T01:CDS 50.0%
TGGAGCAAATTGAGCACCCA+TGG - Chr2:798999-799018 None:intergenic 50.0%
TTATCCCTCACCGCATCATC+AGG - Chr2:799711-799730 None:intergenic 50.0%
TTCTCAGCGTGTGATGCCTT+TGG + Chr2:799331-799350 MsG0280006352.01.T01:intron 50.0%
! TGAGTCTGAGCCTGATGATG+CGG + Chr2:799698-799717 MsG0280006352.01.T01:CDS 50.0%
!! ACCGCCATTATCAGGTTGGT+AGG + Chr2:800480-800499 MsG0280006352.01.T01:intron 50.0%
!! ACCGCCCTTACTTTTCAGGA+CGG + Chr2:798500-798519 MsG0280006352.01.T01:intron 50.0%
!! TGACACCGCCCTTACTTTTC+AGG + Chr2:798496-798515 MsG0280006352.01.T01:intron 50.0%
!! TGGTCTTATCTTCAGGGGGA+CGG - Chr2:799154-799173 None:intergenic 50.0%
AGACAGCCATAGACTCCTCG+TGG - Chr2:799990-800009 None:intergenic 55.0%
CAGCCCCGTCCTGAAAAGTA+AGG - Chr2:798508-798527 None:intergenic 55.0%
CATGGTTGTTGCCTGCCTTG+CGG + Chr2:799172-799191 MsG0280006352.01.T01:CDS 55.0%
CCCGTCCTGAAAAGTAAGGG+CGG - Chr2:798504-798523 None:intergenic 55.0%
CGTGGGCTTCATCCCCTATT+TGG + Chr2:799675-799694 MsG0280006352.01.T01:CDS 55.0%
CTGAGCAATTTCCGCAAGGC+AGG - Chr2:799186-799205 None:intergenic 55.0%
GCTGACAAGCAGATTGCTCC+TGG - Chr2:798880-798899 None:intergenic 55.0%
GTGGTAGCCCTCTAAACGAG+AGG - Chr2:798392-798411 None:intergenic 55.0%
! CATGTGCGTGTGCTGGTGAA+AGG - Chr2:800310-800329 None:intergenic 55.0%
! GGATAATGCAGCTGGTGCTG+TGG + Chr2:799725-799744 MsG0280006352.01.T01:CDS 55.0%
! TGAGCCTGATGATGCGGTGA+GGG + Chr2:799704-799723 MsG0280006352.01.T01:CDS 55.0%
!! CCGCCCTTACTTTTCAGGAC+GGG + Chr2:798501-798520 MsG0280006352.01.T01:intron 55.0%
!! CGCCCTTACTTTTCAGGACG+GGG + Chr2:798502-798521 MsG0280006352.01.T01:intron 55.0%
CGCAAGGCAGGCAACAACCA+TGG - Chr2:799174-799193 None:intergenic 60.0%
GCGGTGAGGGATAATGCAGC+TGG + Chr2:799717-799736 MsG0280006352.01.T01:CDS 60.0%
! CTGAGCCTGATGATGCGGTG+AGG + Chr2:799703-799722 MsG0280006352.01.T01:CDS 60.0%
!! ATGCAGCTGGTGCTGTGGCA+AGG + Chr2:799730-799749 MsG0280006352.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 797309 800865 797309 ID=MsG0280006352.01;Name=MsG0280006352.01
Chr2 mRNA 797309 800865 797309 ID=MsG0280006352.01.T01;Parent=MsG0280006352.01;Name=MsG0280006352.01.T01;_AED=0.41;_eAED=0.45;_QI=0|0.7|0.72|1|0.6|0.45|11|395|413
Chr2 exon 797309 797409 797309 ID=MsG0280006352.01.T01:exon:848;Parent=MsG0280006352.01.T01
Chr2 exon 797512 797594 797512 ID=MsG0280006352.01.T01:exon:849;Parent=MsG0280006352.01.T01
Chr2 exon 797861 797901 797861 ID=MsG0280006352.01.T01:exon:850;Parent=MsG0280006352.01.T01
Chr2 exon 798611 798758 798611 ID=MsG0280006352.01.T01:exon:851;Parent=MsG0280006352.01.T01
Chr2 exon 798840 799057 798840 ID=MsG0280006352.01.T01:exon:852;Parent=MsG0280006352.01.T01
Chr2 exon 799143 799238 799143 ID=MsG0280006352.01.T01:exon:853;Parent=MsG0280006352.01.T01
Chr2 exon 799338 799450 799338 ID=MsG0280006352.01.T01:exon:854;Parent=MsG0280006352.01.T01
Chr2 exon 799656 799791 799656 ID=MsG0280006352.01.T01:exon:855;Parent=MsG0280006352.01.T01
Chr2 exon 799946 800050 799946 ID=MsG0280006352.01.T01:exon:856;Parent=MsG0280006352.01.T01
Chr2 exon 800158 800493 800158 ID=MsG0280006352.01.T01:exon:857;Parent=MsG0280006352.01.T01
Chr2 exon 800606 800865 800606 ID=MsG0280006352.01.T01:exon:858;Parent=MsG0280006352.01.T01
Chr2 CDS 797309 797409 797309 ID=MsG0280006352.01.T01:cds;Parent=MsG0280006352.01.T01
Chr2 CDS 797512 797594 797512 ID=MsG0280006352.01.T01:cds;Parent=MsG0280006352.01.T01
Chr2 CDS 797861 797901 797861 ID=MsG0280006352.01.T01:cds;Parent=MsG0280006352.01.T01
Chr2 CDS 798611 798758 798611 ID=MsG0280006352.01.T01:cds;Parent=MsG0280006352.01.T01
Chr2 CDS 798840 799057 798840 ID=MsG0280006352.01.T01:cds;Parent=MsG0280006352.01.T01
Chr2 CDS 799143 799238 799143 ID=MsG0280006352.01.T01:cds;Parent=MsG0280006352.01.T01
Chr2 CDS 799338 799450 799338 ID=MsG0280006352.01.T01:cds;Parent=MsG0280006352.01.T01
Chr2 CDS 799656 799791 799656 ID=MsG0280006352.01.T01:cds;Parent=MsG0280006352.01.T01
Chr2 CDS 799946 800050 799946 ID=MsG0280006352.01.T01:cds;Parent=MsG0280006352.01.T01
Chr2 CDS 800158 800358 800158 ID=MsG0280006352.01.T01:cds;Parent=MsG0280006352.01.T01
Chr2 three_prime_UTR 800359 800493 800359 ID=MsG0280006352.01.T01:three_prime_utr;Parent=MsG0280006352.01.T01
Chr2 three_prime_UTR 800606 800865 800606 ID=MsG0280006352.01.T01:three_prime_utr;Parent=MsG0280006352.01.T01
Gene Sequence

>MsG0280006352.01.T01

ATGTTAAGCTATTTGGAGGAGACACTAAGAATCTTGGTCAAACACTGTGGTTATTTTCATGGAGATGTCAGACTTCAGGCAATCACTGCTTTAAAACGTCGGAATCTTGAACTTTTCAAAAGTAATTGTTTGTGGTTGTTTCAGCATAAAGTGCATTTTACCATGTTTAAAATTGTTCTTATTAATGCTTTAACTGCAGCCCATGCAATCTTCCAAAGCCAAAATCGATCGAGTATGATTGATTCAACAGATACTGTGATGAATATTTTCATCAAGACTATGGTTGATGATGATGACAAGGAAGTGGTTGCTCAGGCTTGCACTAATGTGGCTGACATCATTCGAGATTATGGCTATGCAACTCTTGAGCCATACTTGCCCAAGCTTGTTCATGCAACTTCATTGTTGCTCCAGGAGCAATCTGCTTGTCAGCTGCAAGAATCGGACAGTGAAATTGATGAAGATGATAGTGCACACGATGAAGTACTTATGGATGCAGTTTCTGATCTTCTCCCTGCATTTGCAAAGTCCATGGGTGCTCAATTTGCTCCAATTTTTGAACAACTATTTGATCATTTGATGAAATTTGCAAAAGCTTTCCGTCCCCCTGAAGATAAGACCATGGTTGTTGCCTGCCTTGCGGAAATTGCTCAGAACATGGGTTTTCCAATTGCAGTCTATGTGGATCGTGTGATGCCTTTGGTGCTTAAAGAATTAGCGTCACCTGAGGCAACCAATAGAAGAAATGCTGCATTTTGTGTTGGAGAGTTTTGCAAAAATGGTGGCGATTCAGCTTTGAAATATTATGACAATATATTACGTGGGCTTCATCCCCTATTTGGTGAGTCTGAGCCTGATGATGCGGTGAGGGATAATGCAGCTGGTGCTGTGGCAAGGATGATTATGGTGCACCCGGAGTCTATTCCTTTAAATCAGGTTCTTCCTGTTTTCATGAGAGTTCTTCCATTGAAAGAAGACCACGAGGAGTCTATGGCTGTCTATAGTTGCGTCTCTACTCTTGTATTCTCATCCAATCCACTGATCCATTCTCTTATCCCTGAATTAGTTAATATTTTTGCTCAAGTGGCGGCATCACCTATTGAGACATCTGAAGTCAAAGCTCTAGTAGGCAGAGCTTTTTGTCATCTAATTTCATTATACGGACAACAAATGCAACCCCTTCTGAGCAACCTTTCACCAGCACACGCACATGCATTATCAGCATTTTCTACAATGAGCTGA
Protein sequence

>MsG0280006352.01.T01

MLSYLEETLRILVKHCGYFHGDVRLQAITALKRRNLELFKSNCLWLFQHKVHFTMFKIVLINALTAAHAIFQSQNRSSMIDSTDTVMNIFIKTMVDDDDKEVVAQACTNVADIIRDYGYATLEPYLPKLVHATSLLLQEQSACQLQESDSEIDEDDSAHDEVLMDAVSDLLPAFAKSMGAQFAPIFEQLFDHLMKFAKAFRPPEDKTMVVACLAEIAQNMGFPIAVYVDRVMPLVLKELASPEATNRRNAAFCVGEFCKNGGDSALKYYDNILRGLHPLFGESEPDDAVRDNAAGAVARMIMVHPESIPLNQVLPVFMRVLPLKEDHEESMAVYSCVSTLVFSSNPLIHSLIPELVNIFAQVAASPIETSEVKALVGRAFCHLISLYGQQMQPLLSNLSPAHAHALSAFSTMS*