AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006410.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006410.01.T01 MTR_2g007930 99.476 191 1 0 1 191 1 191 3.95e-140 397
MsG0280006410.01.T01 MTR_1g098790 83.770 191 30 1 1 191 1 190 5.75e-112 326
MsG0280006410.01.T01 MTR_1g088960 51.531 196 80 4 1 191 1 186 4.24e-64 203
MsG0280006410.01.T01 MTR_8g077195 51.546 194 86 4 1 191 1 189 1.53e-61 196
MsG0280006410.01.T01 MTR_1g022370 48.571 210 86 4 1 191 1 207 3.09e-61 196
MsG0280006410.01.T01 MTR_5g020580 53.333 195 83 5 1 191 1 191 4.38e-61 195
MsG0280006410.01.T01 MTR_2g020280 58.741 143 58 1 49 191 34 175 2.30e-58 188
MsG0280006410.01.T01 MTR_8g077620 45.876 194 92 5 1 191 1 184 1.30e-49 165
MsG0280006410.01.T01 MTR_8g077675 50.000 160 74 3 32 191 28 181 1.81e-48 162
MsG0280006410.01.T01 MTR_1g023800 51.656 151 65 4 1 148 1 146 1.04e-46 150
MsG0280006410.01.T01 MTR_2g076200 50.365 137 67 1 54 190 42 177 8.24e-45 152
MsG0280006410.01.T01 MTR_2g076210 49.635 137 68 1 54 190 37 172 1.45e-44 151
MsG0280006410.01.T01 MTR_8g077640 45.078 193 92 5 1 191 46 226 5.72e-40 140
MsG0280006410.01.T01 MTR_2g020280 55.844 77 33 1 115 191 1 76 6.75e-24 95.9
MsG0280006410.01.T01 MTR_8g077650 38.095 147 58 6 49 191 14 131 4.69e-18 80.5
MsG0280006410.01.T01 MTR_0210s0010 41.053 95 49 2 97 191 9 96 3.79e-15 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006410.01.T01 AT1G76900 79.381 194 37 2 1 191 1 194 3.17e-107 315
MsG0280006410.01.T01 AT1G76900 79.381 194 37 2 1 191 1 194 3.17e-107 315
MsG0280006410.01.T01 AT1G76900 79.381 194 37 2 1 191 1 194 3.17e-107 315
MsG0280006410.01.T01 AT1G43640 74.093 193 47 2 1 191 1 192 2.03e-100 296
MsG0280006410.01.T01 AT1G25280 75.253 198 40 3 1 191 1 196 1.32e-97 290
MsG0280006410.01.T01 AT1G43640 82.540 126 22 0 66 191 1 126 8.88e-75 229
MsG0280006410.01.T01 AT2G47900 54.450 191 85 1 1 191 1 189 6.56e-73 226
MsG0280006410.01.T01 AT2G47900 54.450 191 85 1 1 191 1 189 6.56e-73 226
MsG0280006410.01.T01 AT2G47900 54.167 192 85 2 1 191 1 190 1.36e-71 222
MsG0280006410.01.T01 AT2G18280 53.846 195 75 4 1 191 1 184 9.59e-63 199
MsG0280006410.01.T01 AT2G18280 53.846 195 75 4 1 191 1 184 9.59e-63 199
MsG0280006410.01.T01 AT1G47270 46.939 196 84 2 1 191 1 181 2.36e-57 185
MsG0280006410.01.T01 AT1G47270 46.939 196 84 2 1 191 25 205 4.01e-57 185
MsG0280006410.01.T01 AT1G47270 46.939 196 84 2 1 191 26 206 4.02e-57 185
MsG0280006410.01.T01 AT3G06380 53.237 139 63 2 54 191 33 170 4.60e-49 163
MsG0280006410.01.T01 AT1G53320 51.064 141 68 1 51 191 41 180 5.84e-46 155
MsG0280006410.01.T01 AT5G18680 48.951 143 71 2 50 191 35 176 9.64e-45 152
MsG0280006410.01.T01 AT1G61940 56.977 86 37 0 57 142 1 86 3.27e-33 119
MsG0280006410.01.T01 AT3G06380 50.667 75 36 1 117 191 5 78 3.53e-21 88.6
MsG0280006410.01.T01 AT1G61940 60.656 61 24 0 57 117 1 61 7.42e-21 87.0
MsG0280006410.01.T01 AT5G18680 50.633 79 38 1 113 191 7 84 1.23e-20 87.4

Find 63 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCTAGATCTATTTATTC+TGG 0.101270 2:-1579000 MsG0280006410.01.T01:five_prime_UTR
GTGATCTAGCTTAGGAGTTT+TGG 0.235422 2:-1578631 MsG0280006410.01.T01:five_prime_UTR
GCAGCTTTGTTGGTTGAAAA+TGG 0.267345 2:-1576849 MsG0280006410.01.T01:intron
CGTGACGTTCGTGATAGTTT+TGG 0.276663 2:-1577952 MsG0280006410.01.T01:CDS
GTGCTTCTGTTTGCCAGTCT+TGG 0.312781 2:-1577720 MsG0280006410.01.T01:CDS
ATTTGCAACCAACCTGCTTC+AGG 0.316319 2:+1577632 None:intergenic
ATGACATCAAATAGTAATTC+CGG 0.334292 2:+1577799 None:intergenic
ACAAAAGAGATACTTATTCT+TGG 0.352074 2:-1578010 MsG0280006410.01.T01:five_prime_UTR
CAAAAGAGATACTTATTCTT+GGG 0.392034 2:-1578009 MsG0280006410.01.T01:five_prime_UTR
TCTCTAGATCTATTTATTCT+GGG 0.406157 2:-1578999 MsG0280006410.01.T01:intron
AGCAGAATGATAAAAGCTTT+AGG 0.419630 2:+1579072 None:intergenic
CTTCTGTTTGCCAGTCTTGG+AGG 0.420970 2:-1577717 MsG0280006410.01.T01:CDS
AATTACTATTTGATGTCATT+CGG 0.424860 2:-1577795 MsG0280006410.01.T01:CDS
GCAACTACATGCTTTCTTGA+AGG 0.425706 2:+1577745 None:intergenic
CTCAGTGTAGGTTGTTCTCC+TGG 0.432833 2:+1576800 None:intergenic
TTGTAATTCAAAATAGCTGC+TGG 0.434645 2:-1577834 MsG0280006410.01.T01:CDS
AATTCCTTCTTTCTGCTAAG+AGG 0.435478 2:-1576824 MsG0280006410.01.T01:CDS
TTCTTTCTGCTAAGAGGACC+AGG 0.458845 2:-1576818 MsG0280006410.01.T01:CDS
GTTCCCTGTGTCCCTGAAGC+AGG 0.461781 2:-1577644 MsG0280006410.01.T01:intron
TGACATCAAATAGTAATTCC+GGG 0.465027 2:+1577800 None:intergenic
CAGGGCTCAGACAAAGGAAT+AGG 0.465192 2:+1577441 None:intergenic
AGAGAGAAAGAGAGAGATGA+GGG 0.465559 2:-1579130 MsG0280006410.01.T01:five_prime_UTR
TATGCTACGGAAAGACATTC+CGG 0.472706 2:+1577978 None:intergenic
CTGCTGGGCGAACTTGCCCC+CGG 0.484008 2:-1577818 MsG0280006410.01.T01:CDS
GGTGCTTTGTGATCTAGCTT+AGG 0.486239 2:-1578639 MsG0280006410.01.T01:five_prime_UTR
CTATTCCTTTGTCTGAGCCC+TGG 0.486417 2:-1577440 MsG0280006410.01.T01:intron
GTAAGTTTGCCACAGAACTC+TGG 0.486827 2:+1577667 None:intergenic
TTATTCTTGGGATTCTACTC+CGG 0.494237 2:-1577997 MsG0280006410.01.T01:five_prime_UTR
ATGATTCCGTCTCGTGGCCC+TGG 0.498403 2:+1577506 None:intergenic
TTTGCAACCAACCTGCTTCA+GGG 0.503932 2:+1577633 None:intergenic
TCTCAGCTTCATACAATACA+AGG 0.503978 2:-1579026 MsG0280006410.01.T01:five_prime_UTR
AACCAACCAGTACAAGCATA+TGG 0.505142 2:+1578051 None:intergenic
AAAGTCTCATGGTTCTGTAC+AGG 0.510601 2:-1577875 MsG0280006410.01.T01:CDS
GCTTACCAGGGCTCAGACAA+AGG 0.519038 2:+1577435 None:intergenic
TGGCAGCCATATGCTTGTAC+TGG 0.521805 2:-1578057 MsG0280006410.01.T01:intron
GAGACTTTCCTCTATGATGA+TGG 0.534079 2:+1577890 None:intergenic
TGCACATATTCCTCCAAGAC+TGG 0.534318 2:+1577707 None:intergenic
CCAACCTGCTTCAGGGACAC+AGG 0.545878 2:+1577640 None:intergenic
TAAGTTTGCCACAGAACTCT+GGG 0.552867 2:+1577668 None:intergenic
CACTGAGTATGTGATTTCAA+TGG 0.555250 2:-1576784 MsG0280006410.01.T01:CDS
TGGTCCTCTTAGCAGAAAGA+AGG 0.558383 2:+1576820 None:intergenic
TAGAGGAGAGTGAGAATACA+TGG 0.558627 2:-1577768 MsG0280006410.01.T01:CDS
AGCCATATGCTTGTACTGGT+TGG 0.568682 2:-1578053 MsG0280006410.01.T01:five_prime_UTR
TCTTCTCTCACTCTTGTACC+CGG 0.570202 2:+1579164 None:intergenic
AGATCAAGTAATACTTACAT+TGG 0.570296 2:-1576744 MsG0280006410.01.T01:CDS
GAGAGAGAAAGAGAGAGATG+AGG 0.570613 2:-1579131 MsG0280006410.01.T01:five_prime_UTR
CTTACTGGCCATCATCATAG+AGG 0.586395 2:-1577898 MsG0280006410.01.T01:CDS
TGATGTCATTCGGCGACTAG+AGG 0.590244 2:-1577785 MsG0280006410.01.T01:CDS
GAGAAAGAGAGAGATGAGGG+AGG 0.592597 2:-1579127 MsG0280006410.01.T01:five_prime_UTR
CATCATAGAGGAAAGTCTCA+TGG 0.596493 2:-1577886 MsG0280006410.01.T01:CDS
GGCTCAGACAAAGGAATAGG+TGG 0.596757 2:+1577444 None:intergenic
CAACCTGCTTCAGGGACACA+GGG 0.603326 2:+1577641 None:intergenic
TGTAATTCAAAATAGCTGCT+GGG 0.606882 2:-1577833 MsG0280006410.01.T01:CDS
CATTGAATGATTCCGTCTCG+TGG 0.607917 2:+1577500 None:intergenic
GACATCAAATAGTAATTCCG+GGG 0.619654 2:+1577801 None:intergenic
TTTCAGCCAGGGCCACGAGA+CGG 0.619741 2:-1577512 MsG0280006410.01.T01:intron
GAACGTCACGAACTATGCTA+CGG 0.624312 2:+1577965 None:intergenic
GTCTTGGAGGAATATGTGCA+AGG 0.636885 2:-1577704 MsG0280006410.01.T01:CDS
TGAAATCACATACTCAGTGT+AGG 0.638165 2:+1576788 None:intergenic
ATACTTACATTGGAAAACTG+AGG 0.671640 2:-1576734 MsG0280006410.01.T01:CDS
GTTAAGAGCCCAGAGTTCTG+TGG 0.672556 2:-1577676 MsG0280006410.01.T01:CDS
CTCAGCTTCATACAATACAA+GGG 0.675039 2:-1579025 MsG0280006410.01.T01:five_prime_UTR
ACATCAAATAGTAATTCCGG+GGG 0.704639 2:+1577802 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAAAATATATTTTTTT+AGG - Chr2:1577103-1577122 MsG0280006410.01.T01:intron 0.0%
!!! AATATATTTTTTTAGGTTTT+TGG - Chr2:1577110-1577129 MsG0280006410.01.T01:intron 10.0%
!!! AATCTTAATTAGATTTTATA+TGG + Chr2:1577545-1577564 None:intergenic 10.0%
!! AAAAATAATAACTTTGGATT+TGG + Chr2:1576938-1576957 None:intergenic 15.0%
!! AAAGTAAATAAAATTGAAAC+AGG + Chr2:1579023-1579042 None:intergenic 15.0%
!! AAATACATAAAAAATTCTCT+TGG + Chr2:1577044-1577063 None:intergenic 15.0%
!! ATTCTTAGTAAAAAAAAAAG+AGG + Chr2:1578300-1578319 None:intergenic 15.0%
!! TCATTATTATTTCAACATAA+AGG + Chr2:1578329-1578348 None:intergenic 15.0%
!!! ATTAGATTTTATATGGTTTA+TGG + Chr2:1577538-1577557 None:intergenic 15.0%
!! AATAATTTATTTGCCTTGTA+AGG - Chr2:1577508-1577527 MsG0280006410.01.T01:CDS 20.0%
!! AATTACTATTTGATGTCATT+CGG - Chr2:1578104-1578123 MsG0280006410.01.T01:intron 20.0%
!! AGGTACCAAAAAAAAAAAAA+AGG + Chr2:1577433-1577452 None:intergenic 20.0%
!! GTGTGTAAATATTGAAATAT+CGG - Chr2:1577707-1577726 MsG0280006410.01.T01:CDS 20.0%
!! TTTCAAAATTCAAACAGTTT+AGG - Chr2:1578578-1578597 MsG0280006410.01.T01:intron 20.0%
!! TTTCTGTAACATTTCTATAA+TGG - Chr2:1578754-1578773 MsG0280006410.01.T01:intron 20.0%
!!! TATTTTTTGCATTTGATTCA+TGG - Chr2:1577663-1577682 MsG0280006410.01.T01:CDS 20.0%
!!! TGCAACCTTTTTTTTTTTTT+TGG - Chr2:1577425-1577444 MsG0280006410.01.T01:intron 20.0%
!!! TTAGTTTTTGGATAGTATTT+TGG - Chr2:1577749-1577768 MsG0280006410.01.T01:CDS 20.0%
! AAAAAGGTTGCATATATCAA+AGG + Chr2:1577417-1577436 None:intergenic 25.0%
! AAAAGGTTGCATATATCAAA+GGG + Chr2:1577416-1577435 None:intergenic 25.0%
! AACTAAAGTTGCATATATCA+AGG + Chr2:1577453-1577472 None:intergenic 25.0%
! AATTTGTAAGCATAGTAATG+AGG - Chr2:1577137-1577156 MsG0280006410.01.T01:intron 25.0%
! ACAAAAGAGATACTTATTCT+TGG - Chr2:1577889-1577908 MsG0280006410.01.T01:CDS 25.0%
! AGATCAAGTAATACTTACAT+TGG - Chr2:1579155-1579174 MsG0280006410.01.T01:five_prime_UTR 25.0%
! ATGAATATTTGTGCATATGT+TGG - Chr2:1578621-1578640 MsG0280006410.01.T01:five_prime_UTR 25.0%
! ATGACATCAAATAGTAATTC+CGG + Chr2:1578103-1578122 None:intergenic 25.0%
! CAAAAGAGATACTTATTCTT+GGG - Chr2:1577890-1577909 MsG0280006410.01.T01:CDS 25.0%
! CAAAAGGAAATAAATCTTCA+CGG + Chr2:1578788-1578807 None:intergenic 25.0%
! GAAGTAGATAAAATTGAAAC+AGG + Chr2:1578983-1579002 None:intergenic 25.0%
! GTAAGATAAGCATAATGTAA+GGG + Chr2:1577344-1577363 None:intergenic 25.0%
! TCTCTAGATCTATTTATTCT+GGG - Chr2:1576900-1576919 MsG0280006410.01.T01:intron 25.0%
! TGTAAGATAAGCATAATGTA+AGG + Chr2:1577345-1577364 None:intergenic 25.0%
! TTCTCTAGATCTATTTATTC+TGG - Chr2:1576899-1576918 MsG0280006410.01.T01:intron 25.0%
! TTGATATATGCAACTTTAGT+TGG - Chr2:1577452-1577471 MsG0280006410.01.T01:CDS 25.0%
!! AATGTCTGATTTTTATGCAT+TGG + Chr2:1578736-1578755 None:intergenic 25.0%
!! ATAAAAGCATATAAACCACT+AGG + Chr2:1578513-1578532 None:intergenic 25.0%
!! ATTTGTGTTTTGCAGATAAA+GGG - Chr2:1577239-1577258 MsG0280006410.01.T01:intron 25.0%
!! TATTTGTGTTTTGCAGATAA+AGG - Chr2:1577238-1577257 MsG0280006410.01.T01:intron 25.0%
!!! ATTAACTAGCAAGTTTTATG+AGG - Chr2:1577300-1577319 MsG0280006410.01.T01:intron 25.0%
!!! ATTTCTAAAGTTTTGATGCT+AGG - Chr2:1578917-1578936 MsG0280006410.01.T01:intron 25.0%
!!! GTTTAGGTTTTTTAAGTTAC+TGG - Chr2:1578594-1578613 MsG0280006410.01.T01:intron 25.0%
!!! TTTCTAAAGTTTTGATGCTA+GGG - Chr2:1578918-1578937 MsG0280006410.01.T01:intron 25.0%
!!! TTTTTGGATAGTATTTTGGT+AGG - Chr2:1577753-1577772 MsG0280006410.01.T01:CDS 25.0%
AGCAGAATGATAAAAGCTTT+AGG + Chr2:1576830-1576849 None:intergenic 30.0%
ATACTTACATTGGAAAACTG+AGG - Chr2:1579165-1579184 MsG0280006410.01.T01:five_prime_UTR 30.0%
TATAAACCACTAGGTTAACT+AGG + Chr2:1578504-1578523 None:intergenic 30.0%
TGACATCAAATAGTAATTCC+GGG + Chr2:1578102-1578121 None:intergenic 30.0%
TGTAATTCAAAATAGCTGCT+GGG - Chr2:1578066-1578085 MsG0280006410.01.T01:intron 30.0%
TTCTTTGATGTCCATTACAT+CGG - Chr2:1578837-1578856 MsG0280006410.01.T01:intron 30.0%
TTGTAATTCAAAATAGCTGC+TGG - Chr2:1578065-1578084 MsG0280006410.01.T01:intron 30.0%
!! AGTTTTGATGTCAAACTTAC+TGG - Chr2:1577986-1578005 MsG0280006410.01.T01:exon 30.0%
!! CAGCTATTTTGAATTACAAG+AGG + Chr2:1578064-1578083 None:intergenic 30.0%
!! TTCCTTTTGTGATTGATTCT+AGG - Chr2:1578799-1578818 MsG0280006410.01.T01:intron 30.0%
!!! CTGATTTGGTTCTTAGTTTT+TGG - Chr2:1577737-1577756 MsG0280006410.01.T01:CDS 30.0%
AATTCCTTCTTTCTGCTAAG+AGG - Chr2:1579075-1579094 MsG0280006410.01.T01:five_prime_UTR 35.0%
ACATCAAATAGTAATTCCGG+GGG + Chr2:1578100-1578119 None:intergenic 35.0%
ATATCGGAAGCTTTCTGATT+TGG - Chr2:1577723-1577742 MsG0280006410.01.T01:CDS 35.0%
CACTGAGTATGTGATTTCAA+TGG - Chr2:1579115-1579134 MsG0280006410.01.T01:five_prime_UTR 35.0%
CTCAGCTTCATACAATACAA+GGG - Chr2:1576874-1576893 MsG0280006410.01.T01:intron 35.0%
CTCCTAGAATCAATCACAAA+AGG + Chr2:1578804-1578823 None:intergenic 35.0%
CTTACATGTGTTAACGATGA+TGG - Chr2:1577359-1577378 MsG0280006410.01.T01:intron 35.0%
GAACTGATACTCTTCTTTGA+TGG - Chr2:1577822-1577841 MsG0280006410.01.T01:CDS 35.0%
GACATCAAATAGTAATTCCG+GGG + Chr2:1578101-1578120 None:intergenic 35.0%
TCTCAGCTTCATACAATACA+AGG - Chr2:1576873-1576892 MsG0280006410.01.T01:intron 35.0%
TCTTTGATGTCCATTACATC+GGG - Chr2:1578838-1578857 MsG0280006410.01.T01:intron 35.0%
TGAAATCACATACTCAGTGT+AGG + Chr2:1579114-1579133 None:intergenic 35.0%
TTATTCTTGGGATTCTACTC+CGG - Chr2:1577902-1577921 MsG0280006410.01.T01:CDS 35.0%
TTTGCATTTGATTCATGGCT+AGG - Chr2:1577668-1577687 MsG0280006410.01.T01:CDS 35.0%
! ATTTGTGCATATGTTGGTTG+TGG - Chr2:1578627-1578646 MsG0280006410.01.T01:five_prime_UTR 35.0%
! GTTTTGCTTCTACGTACTTA+GGG + Chr2:1577596-1577615 None:intergenic 35.0%
! TCTCTTTTGTGAACTTCTGA+TGG + Chr2:1577879-1577898 None:intergenic 35.0%
! TGTTTTGCTTCTACGTACTT+AGG + Chr2:1577597-1577616 None:intergenic 35.0%
! TTCTTCAAATCTGAAGCCTT+TGG - Chr2:1576994-1577013 MsG0280006410.01.T01:intron 35.0%
! TTTTGCTTCTACGTACTTAG+GGG + Chr2:1577595-1577614 None:intergenic 35.0%
!! GCTTTTATTTCAGATGCTTC+TGG - Chr2:1578525-1578544 MsG0280006410.01.T01:intron 35.0%
!! TTTGACTTTTGCAGCTTTGT+TGG - Chr2:1579040-1579059 MsG0280006410.01.T01:five_prime_UTR 35.0%
!!! ATAGTTTTGGGAGCTTATCT+AGG - Chr2:1577960-1577979 MsG0280006410.01.T01:CDS 35.0%
AACCAACCAGTACAAGCATA+TGG + Chr2:1577851-1577870 None:intergenic 40.0%
AGAGAGAAAGAGAGAGATGA+GGG - Chr2:1576769-1576788 MsG0280006410.01.T01:CDS 40.0%
CATCATAGAGGAAAGTCTCA+TGG - Chr2:1578013-1578032 MsG0280006410.01.T01:five_prime_UTR 40.0%
CTTTGATGTCCATTACATCG+GGG - Chr2:1578839-1578858 MsG0280006410.01.T01:intron 40.0%
GAGACTTTCCTCTATGATGA+TGG + Chr2:1578012-1578031 None:intergenic 40.0%
GCAACTACATGCTTTCTTGA+AGG + Chr2:1578157-1578176 None:intergenic 40.0%
GGTTTATGGAACACCTTACA+AGG + Chr2:1577524-1577543 None:intergenic 40.0%
TAAGTTTGCCACAGAACTCT+GGG + Chr2:1578234-1578253 None:intergenic 40.0%
TAGAGGAGAGTGAGAATACA+TGG - Chr2:1578131-1578150 MsG0280006410.01.T01:intron 40.0%
TATGCTACGGAAAGACATTC+CGG + Chr2:1577924-1577943 None:intergenic 40.0%
TTTGATGTCCATTACATCGG+GGG - Chr2:1578840-1578859 MsG0280006410.01.T01:intron 40.0%
TTTGCTTCTACGTACTTAGG+GGG + Chr2:1577594-1577613 None:intergenic 40.0%
! AAAGTCTCATGGTTCTGTAC+AGG - Chr2:1578024-1578043 MsG0280006410.01.T01:five_prime_UTR 40.0%
! GTGACGTTCGTGATAGTTTT+GGG - Chr2:1577948-1577967 MsG0280006410.01.T01:CDS 40.0%
! GTGATTGATTCTAGGAGTCT+TGG - Chr2:1578807-1578826 MsG0280006410.01.T01:intron 40.0%
! TGCGTCAATGAGATTTGTTC+TGG - Chr2:1578667-1578686 MsG0280006410.01.T01:intron 40.0%
!! GCAGCTTTGTTGGTTGAAAA+TGG - Chr2:1579050-1579069 MsG0280006410.01.T01:five_prime_UTR 40.0%
!! GTGATCTAGCTTAGGAGTTT+TGG - Chr2:1577268-1577287 MsG0280006410.01.T01:intron 40.0%
!! TTCGTTTCACTTTTCAGCCA+GGG - Chr2:1578376-1578395 MsG0280006410.01.T01:intron 40.0%
ACAGAAACCCAGTTGACCAA+AGG + Chr2:1577013-1577032 None:intergenic 45.0%
ATTTGCAACCAACCTGCTTC+AGG + Chr2:1578270-1578289 None:intergenic 45.0%
CATGGCTAGGATGCATAAAC+TGG - Chr2:1577681-1577700 MsG0280006410.01.T01:CDS 45.0%
CATTGAATGATTCCGTCTCG+TGG + Chr2:1578402-1578421 None:intergenic 45.0%
CTTACGCCTAGTTAACCTAG+TGG - Chr2:1578495-1578514 MsG0280006410.01.T01:intron 45.0%
CTTACTGGCCATCATCATAG+AGG - Chr2:1578001-1578020 MsG0280006410.01.T01:five_prime_UTR 45.0%
GAACGTCACGAACTATGCTA+CGG + Chr2:1577937-1577956 None:intergenic 45.0%
GAGAGAGAAAGAGAGAGATG+AGG - Chr2:1576768-1576787 MsG0280006410.01.T01:CDS 45.0%
GTAAGTTTGCCACAGAACTC+TGG + Chr2:1578235-1578254 None:intergenic 45.0%
GTCTTGGAGGAATATGTGCA+AGG - Chr2:1578195-1578214 MsG0280006410.01.T01:intron 45.0%
TCTTCTCTCACTCTTGTACC+CGG + Chr2:1576738-1576757 None:intergenic 45.0%
TGCACATATTCCTCCAAGAC+TGG + Chr2:1578195-1578214 None:intergenic 45.0%
TGGTCCTCTTAGCAGAAAGA+AGG + Chr2:1579082-1579101 None:intergenic 45.0%
TTCTTTCTGCTAAGAGGACC+AGG - Chr2:1579081-1579100 MsG0280006410.01.T01:five_prime_UTR 45.0%
TTGATGTCCATTACATCGGG+GGG - Chr2:1578841-1578860 MsG0280006410.01.T01:intron 45.0%
TTGCTTCTACGTACTTAGGG+GGG + Chr2:1577593-1577612 None:intergenic 45.0%
TTTGCAACCAACCTGCTTCA+GGG + Chr2:1578269-1578288 None:intergenic 45.0%
! AGCCATATGCTTGTACTGGT+TGG - Chr2:1577846-1577865 MsG0280006410.01.T01:CDS 45.0%
! ATCTGAAGCCTTTGGTCAAC+TGG - Chr2:1577002-1577021 MsG0280006410.01.T01:intron 45.0%
! CGTGACGTTCGTGATAGTTT+TGG - Chr2:1577947-1577966 MsG0280006410.01.T01:CDS 45.0%
! GGTGCTTTGTGATCTAGCTT+AGG - Chr2:1577260-1577279 MsG0280006410.01.T01:intron 45.0%
! TCTGAAGCCTTTGGTCAACT+GGG - Chr2:1577003-1577022 MsG0280006410.01.T01:intron 45.0%
!! GTTCGTTTCACTTTTCAGCC+AGG - Chr2:1578375-1578394 MsG0280006410.01.T01:intron 45.0%
!! AAAAAAAAAAATAATAACTT+TGG + Chr2:1576944-1576963 None:intergenic 5.0%
CAGGGCTCAGACAAAGGAAT+AGG + Chr2:1578461-1578480 None:intergenic 50.0%
CTATTCCTTTGTCTGAGCCC+TGG - Chr2:1578459-1578478 MsG0280006410.01.T01:intron 50.0%
CTCAGTGTAGGTTGTTCTCC+TGG + Chr2:1579102-1579121 None:intergenic 50.0%
CTTCTGTTTGCCAGTCTTGG+AGG - Chr2:1578182-1578201 MsG0280006410.01.T01:intron 50.0%
GAGAAAGAGAGAGATGAGGG+AGG - Chr2:1576772-1576791 MsG0280006410.01.T01:CDS 50.0%
GGCTCAGACAAAGGAATAGG+TGG + Chr2:1578458-1578477 None:intergenic 50.0%
GTGCTTCTGTTTGCCAGTCT+TGG - Chr2:1578179-1578198 MsG0280006410.01.T01:intron 50.0%
GTTAAGAGCCCAGAGTTCTG+TGG - Chr2:1578223-1578242 MsG0280006410.01.T01:intron 50.0%
TGATGTCATTCGGCGACTAG+AGG - Chr2:1578114-1578133 MsG0280006410.01.T01:intron 50.0%
TGATGTCCATTACATCGGGG+GGG - Chr2:1578842-1578861 MsG0280006410.01.T01:intron 50.0%
TGGCAGCCATATGCTTGTAC+TGG - Chr2:1577842-1577861 MsG0280006410.01.T01:CDS 50.0%
!! TAAGCGAAGAGCGCTTACCA+GGG + Chr2:1578479-1578498 None:intergenic 50.0%
CAACCTGCTTCAGGGACACA+GGG + Chr2:1578261-1578280 None:intergenic 55.0%
GCTTACCAGGGCTCAGACAA+AGG + Chr2:1578467-1578486 None:intergenic 55.0%
!! GTAAGCGAAGAGCGCTTACC+AGG + Chr2:1578480-1578499 None:intergenic 55.0%
ATGATTCCGTCTCGTGGCCC+TGG + Chr2:1578396-1578415 None:intergenic 60.0%
CCAACCTGCTTCAGGGACAC+AGG + Chr2:1578262-1578281 None:intergenic 60.0%
CCTGTGTCCCTGAAGCAGGT+TGG - Chr2:1578259-1578278 MsG0280006410.01.T01:intron 60.0%
GCATTGCCCCCCCGATGTAA+TGG + Chr2:1578851-1578870 None:intergenic 60.0%
GTTCCCTGTGTCCCTGAAGC+AGG - Chr2:1578255-1578274 MsG0280006410.01.T01:intron 60.0%
TTTCAGCCAGGGCCACGAGA+CGG - Chr2:1578387-1578406 MsG0280006410.01.T01:intron 60.0%
CTGCTGGGCGAACTTGCCCC+CGG - Chr2:1578081-1578100 MsG0280006410.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 1576731 1579190 1576731 ID=MsG0280006410.01;Name=MsG0280006410.01
Chr2 mRNA 1576731 1579190 1576731 ID=MsG0280006410.01.T01;Parent=MsG0280006410.01;Name=MsG0280006410.01.T01;_AED=0.49;_eAED=0.49;_QI=337|1|0.8|1|0.5|0.4|5|0|191
Chr2 exon 1576731 1576867 1576731 ID=MsG0280006410.01.T01:exon:179;Parent=MsG0280006410.01.T01
Chr2 exon 1577441 1577528 1577441 ID=MsG0280006410.01.T01:exon:178;Parent=MsG0280006410.01.T01
Chr2 exon 1577645 1578073 1577645 ID=MsG0280006410.01.T01:exon:177;Parent=MsG0280006410.01.T01
Chr2 exon 1578600 1578667 1578600 ID=MsG0280006410.01.T01:exon:176;Parent=MsG0280006410.01.T01
Chr2 exon 1579000 1579190 1579000 ID=MsG0280006410.01.T01:exon:175;Parent=MsG0280006410.01.T01
Chr2 five_prime_UTR 1579000 1579190 1579000 ID=MsG0280006410.01.T01:five_prime_utr;Parent=MsG0280006410.01.T01
Chr2 five_prime_UTR 1578600 1578667 1578600 ID=MsG0280006410.01.T01:five_prime_utr;Parent=MsG0280006410.01.T01
Chr2 five_prime_UTR 1577996 1578073 1577996 ID=MsG0280006410.01.T01:five_prime_utr;Parent=MsG0280006410.01.T01
Chr2 CDS 1577645 1577995 1577645 ID=MsG0280006410.01.T01:cds;Parent=MsG0280006410.01.T01
Chr2 CDS 1577441 1577528 1577441 ID=MsG0280006410.01.T01:cds;Parent=MsG0280006410.01.T01
Chr2 CDS 1576731 1576867 1576731 ID=MsG0280006410.01.T01:cds;Parent=MsG0280006410.01.T01
Gene Sequence

>MsG0280006410.01.T01

ATGTCTTTCCGTAGCATAGTTCGTGACGTTCGTGATAGTTTTGGGAGCTTATCTAGGCGTAGTTTTGATGTCAAACTTACTGGCCATCATCATAGAGGAAAGTCTCATGGTTCTGTACAGGATTTGCATGATCAGCCTCTTGTAATTCAAAATAGCTGCTGGGCGAACTTGCCCCCGGAATTACTATTTGATGTCATTCGGCGACTAGAGGAGAGTGAGAATACATGGCCTTCAAGAAAGCATGTAGTTGCATGTGCTTCTGTTTGCCAGTCTTGGAGGAATATGTGCAAGGACATCGTTAAGAGCCCAGAGTTCTGTGGCAAACTTACGTTCCCTGTGTCCCTGAAGCAGCCAGGGCCACGAGACGGAATCATTCAATGCTTTATCAAAAGAGATAAATCTAACTTAACATACCACCTATTCCTTTGTCTGAGCCCTGCTTTGTTGGTTGAAAATGGAAAATTCCTTCTTTCTGCTAAGAGGACCAGGAGAACAACCTACACTGAGTATGTGATTTCAATGGATGCTGACAACATCTCTAGATCAAGTAATACTTACATTGGAAAACTGAGGTAA
Protein sequence

>MsG0280006410.01.T01

MSFRSIVRDVRDSFGSLSRRSFDVKLTGHHHRGKSHGSVQDLHDQPLVIQNSCWANLPPELLFDVIRRLEESENTWPSRKHVVACASVCQSWRNMCKDIVKSPEFCGKLTFPVSLKQPGPRDGIIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSNTYIGKLR*