AlfalfaGEDB | MsG0280006445.01

M. sativa cultivar ZhongmuNo.1 / MsG0280006445.01

KEGG: -
GO: -
PFAM: PF00226

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006445.01.T01	XP_003593168.1	90.141	142	13	1	1	141	32	173	1.45E-81	248

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006445.01.T01	Q9SDN0	32.593	135	64	5	18	129	60	190	3.18E-14	69.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006445.01.T01	G7INT0	90.141	142	13	1	1	141	32	173	6.92e-82	248

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0280006445.01	MsG0280006446.01	0.849625	2.867150e-60	5.468691e-57

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006445.01.T01	MTR_2g008520	90.141	142	13	1	1	141	32	173	1.75e-85	248
MsG0280006445.01.T01	MTR_2g008540	90.141	142	13	1	1	141	32	173	1.75e-85	248
MsG0280006445.01.T01	MTR_4g094275	54.362	149	48	3	4	137	34	177	3.22e-47	150
MsG0280006445.01.T01	MTR_8g081620	31.126	151	73	6	8	133	47	191	1.33e-15	70.5
MsG0280006445.01.T01	MTR_5g012530	38.182	110	59	2	16	117	4	112	4.15e-13	65.5
MsG0280006445.01.T01	MTR_3g061170	39.560	91	52	3	24	113	59	147	5.54e-11	57.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006445.01.T01	AT4G13830	32.593	135	64	5	18	129	60	190	3.24e-15	69.3
MsG0280006445.01.T01	AT4G13830	33.333	120	68	5	18	128	60	176	1.36e-12	62.4
MsG0280006445.01.T01	AT4G13830	40.741	81	44	3	18	97	60	137	3.06e-12	60.8

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Find 19 sgRNAs with CRISPR-Local

Find 23 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGATCATGACACAAATC+AGG	0.478058	2:+2074203	None:intergenic
AAAGAGAGCATATAGAACAA+TGG	0.635339	2:-2074240	MsG0280006445.01.T01:CDS
AAATGGTTGAATTGAATAGA+AGG	0.441993	2:-2074049	MsG0280006445.01.T01:CDS
AAGTAGATGGATGGAACAAA+TGG	0.493801	2:-2074066	MsG0280006445.01.T01:CDS
ACTGGATCATCATCATCATG+GGG	0.713529	2:-2074011	MsG0280006445.01.T01:CDS
AGACTGGATCATCATCATCA+TGG	0.502880	2:-2074013	MsG0280006445.01.T01:CDS
AGGTCTCATGCACGTGAGAC+TGG	0.437735	2:-2074029	MsG0280006445.01.T01:CDS
ATATGACTTTGAGTTGAGTT+TGG	0.317132	2:-2074099	MsG0280006445.01.T01:CDS
ATCATGGGGTAGTAGAATGA+GGG	0.611732	2:-2073997	MsG0280006445.01.T01:CDS
CATCATGGGGTAGTAGAATG+AGG	0.533214	2:-2073998	MsG0280006445.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTGTTATCATGATCATCTT+TGG	+	Chr2:2074362-2074381	None:intergenic	30.0%
AAACGATCATGACACAAATC+AGG	+	Chr2:2074118-2074137	None:intergenic	35.0%
AAGTAGATGGATGGAACAAA+TGG	-	Chr2:2074252-2074271	MsG0280006445.01.T01:CDS	35.0%
TCATGATCGTTTGAAGAAAG+AGG	-	Chr2:2074126-2074145	MsG0280006445.01.T01:CDS	35.0%
TTTGAGAAGAAGTAGATGGA+TGG	-	Chr2:2074243-2074262	MsG0280006445.01.T01:CDS	35.0%
ACTGGATCATCATCATCATG+GGG	-	Chr2:2074307-2074326	MsG0280006445.01.T01:CDS	40.0%
AGACTGGATCATCATCATCA+TGG	-	Chr2:2074305-2074324	MsG0280006445.01.T01:CDS	40.0%
ATCATGGGGTAGTAGAATGA+GGG	-	Chr2:2074321-2074340	MsG0280006445.01.T01:CDS	40.0%
GACTGGATCATCATCATCAT+GGG	-	Chr2:2074306-2074325	MsG0280006445.01.T01:CDS	40.0%
TGAAGAAAGAGGAATCAACG+AGG	-	Chr2:2074137-2074156	MsG0280006445.01.T01:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	2073956	2074384	2073956	ID=MsG0280006445.01;Name=MsG0280006445.01
Chr2	mRNA	2073956	2074384	2073956	ID=MsG0280006445.01.T01;Parent=MsG0280006445.01;Name=MsG0280006445.01.T01;_AED=0.45;_eAED=0.45;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|142
Chr2	exon	2073956	2074384	2073956	ID=MsG0280006445.01.T01:exon:1328;Parent=MsG0280006445.01.T01
Chr2	CDS	2073956	2074384	2073956	ID=MsG0280006445.01.T01:cds;Parent=MsG0280006445.01.T01

Gene Sequence

>MsG0280006445.01.T01

ATGCAGTTTTGTGTTTCATGCAGAGCCACAAAAAATGTTTCAATTCATAATAAGCTGGATGATGATGACAACTTGTACAAAATACTATGTTTGAGTCCAAAAAGTGCAACAATGGATGACATAAAGAGAGCATATAGAACAATGGCTCTTCAGTATCATCCTGATTTGTGTCATGATCGTTTGAAGAAAGAGGAATCAACGAGGATGTTTGTACAACTCAATGCAGCTTATGAGACTTTGTCAAATCCAAAGCTTAAAGAAGAATATGACTTTGAGTTGAGTTTGGGTTTGAGAAGAAGTAGATGGATGGAACAAATGGTTGAATTGAATAGAAGGTCTCATGCACGTGAGACTGGATCATCATCATCATGGGGTAGTAGAATGAGGGCCAAAAACAATGTAACCAAAGATGATCATGATAACAACTAG

Protein sequence

>MsG0280006445.01.T01

MQFCVSCRATKNVSIHNKLDDDDNLYKILCLSPKSATMDDIKRAYRTMALQYHPDLCHDRLKKEESTRMFVQLNAAYETLSNPKLKEEYDFELSLGLRRSRWMEQMVELNRRSHARETGSSSSWGSRMRAKNNVTKDDHDNN*