AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006899.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006899.01.T01 MTR_2g016230 96.327 245 6 1 1 245 1 242 5.70e-177 486
MsG0280006899.01.T01 MTR_4g080083 59.184 245 92 4 1 244 1 238 2.26e-102 297
MsG0280006899.01.T01 MTR_2g084225 55.967 243 99 3 3 245 4 238 1.14e-97 285
MsG0280006899.01.T01 MTR_4g080083 59.903 207 75 4 1 206 1 200 5.47e-86 254
MsG0280006899.01.T01 MTR_2g058330 40.927 259 119 8 4 244 28 270 9.33e-56 179
MsG0280006899.01.T01 MTR_6g011530 39.147 258 123 10 1 243 38 276 1.87e-55 179
MsG0280006899.01.T01 MTR_7g009710 40.000 240 115 9 4 233 45 265 1.53e-53 174
MsG0280006899.01.T01 MTR_2g055320 44.175 206 93 5 4 197 19 214 2.46e-51 168
MsG0280006899.01.T01 MTR_7g086380 37.143 245 136 6 4 243 47 278 7.17e-49 162
MsG0280006899.01.T01 MTR_5g064550 37.959 245 133 7 1 243 3 230 1.37e-47 158
MsG0280006899.01.T01 MTR_6g027730 38.967 213 110 5 36 243 1 198 6.14e-44 147
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006899.01.T01 AT2G42670 56.735 245 100 3 1 244 1 240 5.24e-96 281
MsG0280006899.01.T01 AT2G42670 57.895 247 95 5 1 244 1 241 1.19e-95 280
MsG0280006899.01.T01 AT3G58670 56.680 247 100 4 1 245 1 242 6.45e-93 273
MsG0280006899.01.T01 AT3G58670 56.680 247 100 4 1 245 1 242 6.45e-93 273
MsG0280006899.01.T01 AT3G58670 56.680 247 100 4 1 245 1 242 6.45e-93 273
MsG0280006899.01.T01 AT3G58670 54.902 204 86 3 43 245 1 199 3.40e-71 216
MsG0280006899.01.T01 AT2G42670 57.669 163 63 3 84 244 15 173 1.34e-58 184
MsG0280006899.01.T01 AT1G18490 40.000 255 135 7 2 244 33 281 3.86e-57 184
MsG0280006899.01.T01 AT5G15120 39.841 251 125 9 4 244 58 292 1.16e-53 175
MsG0280006899.01.T01 AT5G39890 38.889 252 120 10 4 244 47 275 1.46e-51 169
MsG0280006899.01.T01 AT5G39890 41.414 198 94 6 4 197 47 226 1.21e-48 160

Find 71 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGCCTAGCGATTTGATTAT+TGG 0.191711 2:-7755267 MsG0280006899.01.T01:CDS
CAACAATTCTTTATCCAAAT+AGG 0.216030 2:-7755595 MsG0280006899.01.T01:CDS
TTGCTTAAAACAGTCATTCT+AGG 0.237625 2:+7757145 None:intergenic
TGGAGGTTGCCATCCCTATT+TGG 0.251310 2:+7755581 None:intergenic
CTCCTTCATCGCCGAATATT+AGG 0.252891 2:+7755225 None:intergenic
TCGAGAGCCTCTTCTGAAAT+AGG 0.276585 2:+7757781 None:intergenic
CGCCTAGCGATTTGATTATT+GGG 0.306512 2:-7755266 MsG0280006899.01.T01:CDS
AACAATTCTTTATCCAAATA+GGG 0.329524 2:-7755594 MsG0280006899.01.T01:CDS
CGTTCTATGAATGGTGGAAA+TGG 0.336983 2:-7757437 MsG0280006899.01.T01:CDS
CCTCATGGTCAAGACCGATA+TGG 0.337653 2:+7757483 None:intergenic
TCATACAATTTCTGAATATA+CGG 0.350667 2:+7757835 None:intergenic
TGCATGTGAAATCATTTGAT+TGG 0.380621 2:-7757105 MsG0280006899.01.T01:CDS
TCCTTCATCGCCGAATATTA+GGG 0.388366 2:+7755226 None:intergenic
TCTTGACCATGAGGCGCAAC+TGG 0.389250 2:-7757474 MsG0280006899.01.T01:CDS
TGCAGGTGAATGTACTTAAT+AGG 0.393225 2:+7757389 None:intergenic
AATGGTGGAAATGGGAGAAT+TGG 0.401520 2:-7757428 MsG0280006899.01.T01:CDS
ACTTCTTCTTCCAATGAGTA+AGG 0.411350 2:+7755509 None:intergenic
AATACAGAGGCCCTAATATT+CGG 0.418183 2:-7755236 MsG0280006899.01.T01:CDS
GAAGAGAGCACAAGGGGTTA+TGG 0.418395 2:+7755547 None:intergenic
TCTTACCCCTCCTTACTCAT+TGG 0.421294 2:-7755519 MsG0280006899.01.T01:CDS
TCATTGGAAGAAGAAGTAAA+TGG 0.431171 2:-7755503 MsG0280006899.01.T01:CDS
GCGATTTGATTATTGGGAAT+GGG 0.433631 2:-7755260 MsG0280006899.01.T01:CDS
AGGCGCAACTGGCGCGAAGT+TGG 0.440265 2:-7757463 MsG0280006899.01.T01:CDS
CTCATGGTCAAGACCGATAT+GGG 0.462946 2:+7757484 None:intergenic
GGAGTATTCTGTATGTCTCC+TGG 0.463962 2:-7757193 MsG0280006899.01.T01:CDS
AGCGATTTGATTATTGGGAA+TGG 0.467999 2:-7755261 MsG0280006899.01.T01:CDS
GCCCTAATATTCGGCGATGA+AGG 0.480072 2:-7755227 None:intergenic
GTTCTATGAATGGTGGAAAT+GGG 0.481808 2:-7757436 MsG0280006899.01.T01:CDS
GATCTGTCCTCAGCGACTTA+CGG 0.485011 2:+7755462 None:intergenic
TCGCTGAGGACAGATCTTCC+AGG 0.485093 2:-7755455 MsG0280006899.01.T01:intron
GGATCAGATTGTACCTAAAA+CGG 0.487386 2:+7757747 None:intergenic
TTCGCGCCAGTTGCGCCTCA+TGG 0.497055 2:+7757468 None:intergenic
GGGTTGAAGCCTTCCCATAT+CGG 0.497687 2:-7757497 MsG0280006899.01.T01:CDS
GGGTTATGGCTTTGAAGCAA+TGG 0.504823 2:+7755561 None:intergenic
TACTTAATAGGAGGACCCTC+AGG 0.529570 2:+7757401 None:intergenic
CTTCTTCCAATGAGTAAGGA+GGG 0.529744 2:+7755513 None:intergenic
AGTTGGAAACGTTCTATGAA+TGG 0.544207 2:-7757446 MsG0280006899.01.T01:CDS
AAGGCTTCCTTGTCCACTGA+GGG 0.547680 2:-7757805 MsG0280006899.01.T01:CDS
AGATTGTACCTAAAACGGTT+CGG 0.560671 2:+7757752 None:intergenic
ATTCTTTATCCAAATAGGGA+TGG 0.561052 2:-7755590 MsG0280006899.01.T01:CDS
AATAGGTCCCTCAGTGGACA+AGG 0.564467 2:+7757798 None:intergenic
TTCTTCCAATGAGTAAGGAG+GGG 0.571850 2:+7755514 None:intergenic
TCTTCTTCCAATGAGTAAGG+AGG 0.590223 2:+7755512 None:intergenic
TAGTGCTTGAGGAGCTGCAC+GGG 0.593482 2:-7755329 MsG0280006899.01.T01:CDS
TTATGGCTTTGAAGCAATGG+AGG 0.594826 2:+7755564 None:intergenic
ATAATCAAATCGCTAGGCGG+CGG 0.595756 2:+7755270 None:intergenic
TGGAAACGTTCTATGAATGG+TGG 0.597235 2:-7757443 MsG0280006899.01.T01:CDS
AGAACTTGTCACATTCGTGC+AGG 0.604310 2:+7757372 None:intergenic
GGGAGAATTGGAACTCCTGA+GGG 0.606282 2:-7757416 MsG0280006899.01.T01:CDS
TGAAGCGGAATCAAAGAACC+AGG 0.610487 2:+7757175 None:intergenic
TAAAGAATTGTTGTGTCACA+AGG 0.613761 2:+7755605 None:intergenic
TGAGGGACCTATTTCAGAAG+AGG 0.616721 2:-7757788 MsG0280006899.01.T01:CDS
CAAGGCTTCCTTGTCCACTG+AGG 0.617584 2:-7757806 MsG0280006899.01.T01:CDS
TGGGATAGATCGCATGACGC+AGG 0.625663 2:+7757073 None:intergenic
GAAATTGTATGACGTCTGCA+AGG 0.625999 2:-7757824 MsG0280006899.01.T01:CDS
CCATATCGGTCTTGACCATG+AGG 0.628240 2:-7757483 MsG0280006899.01.T01:CDS
TGGGAGAATTGGAACTCCTG+AGG 0.629926 2:-7757417 MsG0280006899.01.T01:CDS
TTCCCAATAATCAAATCGCT+AGG 0.630049 2:+7755264 None:intergenic
AGAATGTCGAAGAGAGCACA+AGG 0.630272 2:+7755539 None:intergenic
TGGTCAAGACCGATATGGGA+AGG 0.630545 2:+7757488 None:intergenic
TGAGTTCATCTGAAATCACC+TGG 0.632126 2:-7755305 MsG0280006899.01.T01:CDS
GCGTCATGCGATCTATCCCA+AGG 0.645133 2:-7757070 MsG0280006899.01.T01:intron
CTTATTTCCGTAAGTCGCTG+AGG 0.645761 2:-7755469 MsG0280006899.01.T01:CDS
AGGTGAATGTACTTAATAGG+AGG 0.647213 2:+7757392 None:intergenic
AATGTCGAAGAGAGCACAAG+GGG 0.652144 2:+7755541 None:intergenic
CCAATAATCAAATCGCTAGG+CGG 0.653004 2:+7755267 None:intergenic
ATTGGGAATGGGCAATACAG+AGG 0.655488 2:-7755249 MsG0280006899.01.T01:CDS
ATTCTAGGATGATCATGAAG+CGG 0.655662 2:+7757160 None:intergenic
GTAGTGCTTGAGGAGCTGCA+CGG 0.676084 2:-7755330 MsG0280006899.01.T01:intron
TTCTGAAATAGGTCCCTCAG+TGG 0.690477 2:+7757792 None:intergenic
GAATGTCGAAGAGAGCACAA+GGG 0.743522 2:+7755540 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCATAAGTAAATACAATA+AGG + Chr2:7756031-7756050 None:intergenic 15.0%
!!! AATTTTGAATTTAACTTTTG+TGG + Chr2:7757384-7757403 None:intergenic 15.0%
!! AAAATAATGAGAGATTTAGA+AGG + Chr2:7757651-7757670 None:intergenic 20.0%
!! AAAATATATCTTATCAAAGC+AGG + Chr2:7757152-7757171 None:intergenic 20.0%
!! AACAATTCTTTATCCAAATA+GGG - Chr2:7757474-7757493 MsG0280006899.01.T01:CDS 20.0%
!! ACAAATTCAACAAAAAACAA+AGG + Chr2:7755345-7755364 None:intergenic 20.0%
!! ATACAGTTCACATTAAAATT+CGG + Chr2:7755424-7755443 None:intergenic 20.0%
!! GTTAATACTCTAAATGAATT+TGG - Chr2:7755768-7755787 MsG0280006899.01.T01:intron 20.0%
!! TAAGTTAAGATACATCAATA+TGG + Chr2:7757280-7757299 None:intergenic 20.0%
!! TCATACAATTTCTGAATATA+CGG + Chr2:7755236-7755255 None:intergenic 20.0%
!!! AAACGTATTTTTTCTGTAAA+CGG + Chr2:7756378-7756397 None:intergenic 20.0%
!!! CTAATTTTTAGTTGGAATTA+AGG - Chr2:7756401-7756420 MsG0280006899.01.T01:intron 20.0%
!!! GATTTTGAAATATAGAAAAG+GGG + Chr2:7756303-7756322 None:intergenic 20.0%
!!! GGATTTTGAAATATAGAAAA+GGG + Chr2:7756304-7756323 None:intergenic 20.0%
!!! TATACTGTAATGTTTGATTT+GGG - Chr2:7755441-7755460 MsG0280006899.01.T01:intron 20.0%
!!! TGGATTTTGAAATATAGAAA+AGG + Chr2:7756305-7756324 None:intergenic 20.0%
!!! TTTTGTTCTTTTAAGCAAAA+TGG - Chr2:7756497-7756516 MsG0280006899.01.T01:intron 20.0%
! AAACACTTGAAACTATTGTA+TGG + Chr2:7756925-7756944 None:intergenic 25.0%
! AAACATAGCAATGTGATTTA+TGG + Chr2:7756325-7756344 None:intergenic 25.0%
! AACACTTGAAACTATTGTAT+GGG + Chr2:7756924-7756943 None:intergenic 25.0%
! AAGAACAAAACAGAAAAAGA+AGG + Chr2:7756487-7756506 None:intergenic 25.0%
! CAACAATTCTTTATCCAAAT+AGG - Chr2:7757473-7757492 MsG0280006899.01.T01:CDS 25.0%
! GCAGTTTATAAAAGGTTAAA+AGG + Chr2:7755536-7755555 None:intergenic 25.0%
! GTATACTGTAATGTTTGATT+TGG - Chr2:7755440-7755459 MsG0280006899.01.T01:intron 25.0%
!! ACTGAATTTTGGATTCAAAT+GGG - Chr2:7755810-7755829 MsG0280006899.01.T01:intron 25.0%
!! TATAATTTGGCTTCATTAAC+AGG - Chr2:7756277-7756296 MsG0280006899.01.T01:intron 25.0%
!! TTGATGTTAATTTCAAGTCA+AGG + Chr2:7756560-7756579 None:intergenic 25.0%
!!! CGTTTTTGCTAATTTTTAGT+TGG - Chr2:7756393-7756412 MsG0280006899.01.T01:intron 25.0%
!!! GAATTTAACTTTTGTGGTTT+AGG + Chr2:7757378-7757397 None:intergenic 25.0%
!!! TTGTTTTGAACACTGAATTT+TGG - Chr2:7755799-7755818 MsG0280006899.01.T01:intron 25.0%
!!! TTGTTTTTGTTTTTGCAGAT+TGG - Chr2:7755854-7755873 MsG0280006899.01.T01:intron 25.0%
ATAGAATGCTATGATTTGAG+TGG - Chr2:7756792-7756811 MsG0280006899.01.T01:intron 30.0%
ATTCTTTATCCAAATAGGGA+TGG - Chr2:7757478-7757497 MsG0280006899.01.T01:CDS 30.0%
CGTTGAAATCGATATCTATT+AGG - Chr2:7756765-7756784 MsG0280006899.01.T01:intron 30.0%
CTTGAAATTAACATCAACAG+AGG - Chr2:7756563-7756582 MsG0280006899.01.T01:intron 30.0%
GTTCAAAAACCTAGACATTA+TGG - Chr2:7756147-7756166 MsG0280006899.01.T01:intron 30.0%
TAAAGAATTGTTGTGTCACA+AGG + Chr2:7757466-7757485 None:intergenic 30.0%
TCATTGGAAGAAGAAGTAAA+TGG - Chr2:7757565-7757584 MsG0280006899.01.T01:intron 30.0%
TGCATGTGAAATCATTTGAT+TGG - Chr2:7755963-7755982 MsG0280006899.01.T01:intron 30.0%
TGGAGACATGTTAAACTATT+GGG + Chr2:7756612-7756631 None:intergenic 30.0%
TGTCCTTATTGTTATAGTGA+CGG - Chr2:7755493-7755512 MsG0280006899.01.T01:CDS 30.0%
TGTTAAAAATGTAGTGCTTG+AGG - Chr2:7757728-7757747 MsG0280006899.01.T01:intron 30.0%
TGTTGATATTGTGGACAAAT+GGG - Chr2:7756103-7756122 MsG0280006899.01.T01:intron 30.0%
TTCTCCAACAATTTATCTAG+TGG + Chr2:7756632-7756651 None:intergenic 30.0%
TTGCTTAAAACAGTCATTCT+AGG + Chr2:7755926-7755945 None:intergenic 30.0%
TTGTTGATATTGTGGACAAA+TGG - Chr2:7756102-7756121 MsG0280006899.01.T01:intron 30.0%
! AAACCATAAATACGTCGATT+TGG + Chr2:7757245-7757264 None:intergenic 30.0%
! ACTACATGTAGATTAGCTAT+AGG - Chr2:7756244-7756263 MsG0280006899.01.T01:intron 30.0%
! AGGTTTTTGAACCGTTATTA+CGG + Chr2:7756139-7756158 None:intergenic 30.0%
! CACTGAATTTTGGATTCAAA+TGG - Chr2:7755809-7755828 MsG0280006899.01.T01:intron 30.0%
!! TAGAATGACTGTTTTAAGCA+AGG - Chr2:7755925-7755944 MsG0280006899.01.T01:intron 30.0%
!! TGGTCTAATGGATGTTATTT+TGG - Chr2:7757195-7757214 MsG0280006899.01.T01:CDS 30.0%
!! TTTTAGGTGGAGTAAGATTT+GGG - Chr2:7756461-7756480 MsG0280006899.01.T01:intron 30.0%
!! TTTTGCTAAGTTTTTTGACG+AGG - Chr2:7756867-7756886 MsG0280006899.01.T01:intron 30.0%
!!! ACATGCGAGGTTTTAAATTA+TGG + Chr2:7756185-7756204 None:intergenic 30.0%
!!! GGTCTAATGGATGTTATTTT+GGG - Chr2:7757196-7757215 MsG0280006899.01.T01:CDS 30.0%
AAATTGCAGCCATAATGTCT+AGG + Chr2:7756159-7756178 None:intergenic 35.0%
AACATCCATTAGACCATTAC+TGG + Chr2:7757191-7757210 None:intergenic 35.0%
AATACAGAGGCCCTAATATT+CGG - Chr2:7757832-7757851 MsG0280006899.01.T01:CDS 35.0%
AATCAATTGCCTTTGTCACT+TGG - Chr2:7756658-7756677 MsG0280006899.01.T01:intron 35.0%
ACGGCAATGCAGTTTATAAA+AGG + Chr2:7755544-7755563 None:intergenic 35.0%
ACTTCTTCTTCCAATGAGTA+AGG + Chr2:7757562-7757581 None:intergenic 35.0%
AGATAGTTACCAAGTGACAA+AGG + Chr2:7756670-7756689 None:intergenic 35.0%
AGATCGGACAATCCAAAATT+TGG - Chr2:7757049-7757068 MsG0280006899.01.T01:intron 35.0%
AGATTGTACCTAAAACGGTT+CGG + Chr2:7755319-7755338 None:intergenic 35.0%
AGCGATTTGATTATTGGGAA+TGG - Chr2:7757807-7757826 MsG0280006899.01.T01:CDS 35.0%
AGGACAGTAGCTGTATAATT+TGG - Chr2:7756264-7756283 MsG0280006899.01.T01:intron 35.0%
AGGTGAATGTACTTAATAGG+AGG + Chr2:7755679-7755698 None:intergenic 35.0%
AGTTGGAAACGTTCTATGAA+TGG - Chr2:7755622-7755641 MsG0280006899.01.T01:CDS 35.0%
ATGACAAGATTGAAAGTGAG+AGG + Chr2:7756711-7756730 None:intergenic 35.0%
ATGCCAAATCGACGTATTTA+TGG - Chr2:7757239-7757258 MsG0280006899.01.T01:intron 35.0%
CAGATATTTGCTTCCAGTAA+TGG - Chr2:7757175-7757194 MsG0280006899.01.T01:CDS 35.0%
CTCACTTTCAATCTTGTCAT+TGG - Chr2:7756711-7756730 MsG0280006899.01.T01:intron 35.0%
CTCTGCAATTGTTGATATTG+TGG - Chr2:7756094-7756113 MsG0280006899.01.T01:intron 35.0%
GCGATTTGATTATTGGGAAT+GGG - Chr2:7757808-7757827 MsG0280006899.01.T01:CDS 35.0%
GGATCAGATTGTACCTAAAA+CGG + Chr2:7755324-7755343 None:intergenic 35.0%
GTCCTTATTGTTATAGTGAC+GGG - Chr2:7755494-7755513 MsG0280006899.01.T01:CDS 35.0%
GTCTCCACTAGATAAATTGT+TGG - Chr2:7756625-7756644 MsG0280006899.01.T01:intron 35.0%
GTCTTTATAGACCTCTTCAA+GGG - Chr2:7756529-7756548 MsG0280006899.01.T01:intron 35.0%
GTGGAGACATGTTAAACTAT+TGG + Chr2:7756613-7756632 None:intergenic 35.0%
GTTGATATTGTGGACAAATG+GGG - Chr2:7756104-7756123 MsG0280006899.01.T01:intron 35.0%
TATCAACAATTGCAGAGTAG+TGG + Chr2:7756091-7756110 None:intergenic 35.0%
TCTTTATAGACCTCTTCAAG+GGG - Chr2:7756530-7756549 MsG0280006899.01.T01:intron 35.0%
TGCAGGTGAATGTACTTAAT+AGG + Chr2:7755682-7755701 None:intergenic 35.0%
TGTCTTTATAGACCTCTTCA+AGG - Chr2:7756528-7756547 MsG0280006899.01.T01:intron 35.0%
TTACTGGAAGCAAATATCTG+AGG + Chr2:7757175-7757194 None:intergenic 35.0%
TTCCCAATAATCAAATCGCT+AGG + Chr2:7757807-7757826 None:intergenic 35.0%
TTGAAGAGGTCTATAAAGAC+AGG + Chr2:7756529-7756548 None:intergenic 35.0%
! AGACATTATGGCTGCAATTT+TGG - Chr2:7756159-7756178 MsG0280006899.01.T01:intron 35.0%
! ATTGCACTTGAGCAACTTTT+AGG - Chr2:7756445-7756464 MsG0280006899.01.T01:intron 35.0%
! CAATCTTTGACAAGTTTTGC+TGG + Chr2:7757430-7757449 None:intergenic 35.0%
! GTTCTATGAATGGTGGAAAT+GGG - Chr2:7755632-7755651 MsG0280006899.01.T01:CDS 35.0%
! TCACTCAGTCAACCAAATTT+TGG + Chr2:7757064-7757083 None:intergenic 35.0%
! TTTTATAAACTGCATTGCCG+TGG - Chr2:7755543-7755562 MsG0280006899.01.T01:CDS 35.0%
!! ATTCTAGGATGATCATGAAG+CGG + Chr2:7755911-7755930 None:intergenic 35.0%
!! CTTTTAGGTGGAGTAAGATT+TGG - Chr2:7756460-7756479 MsG0280006899.01.T01:intron 35.0%
!! GTTTTAAGCAAGGTTCTCTA+TGG - Chr2:7755935-7755954 MsG0280006899.01.T01:intron 35.0%
!! TGAGTGGATTGTCTAAATGT+CGG - Chr2:7756808-7756827 MsG0280006899.01.T01:intron 35.0%
AATACAGAGCAGAAAACCAG+CGG + Chr2:7756742-7756761 None:intergenic 40.0%
CAATTATGATCACACATGCG+AGG + Chr2:7756198-7756217 None:intergenic 40.0%
CACCCGTCACTATAACAATA+AGG + Chr2:7755499-7755518 None:intergenic 40.0%
CCAATAATCAAATCGCTAGG+CGG + Chr2:7757804-7757823 None:intergenic 40.0%
CGCCTAGCGATTTGATTATT+GGG - Chr2:7757802-7757821 MsG0280006899.01.T01:CDS 40.0%
CTCGCATGTGTGATCATAAT+TGG - Chr2:7756196-7756215 MsG0280006899.01.T01:intron 40.0%
CTGTAAACGGTCATCTAGAT+AGG + Chr2:7756365-7756384 None:intergenic 40.0%
CTTCTTCCAATGAGTAAGGA+GGG + Chr2:7757558-7757577 None:intergenic 40.0%
GAAATTGTATGACGTCTGCA+AGG - Chr2:7755244-7755263 MsG0280006899.01.T01:CDS 40.0%
TCTTCTTCCAATGAGTAAGG+AGG + Chr2:7757559-7757578 None:intergenic 40.0%
TGCTTCCAGTAATGGTCTAA+TGG - Chr2:7757183-7757202 MsG0280006899.01.T01:CDS 40.0%
TGGAAACGTTCTATGAATGG+TGG - Chr2:7755625-7755644 MsG0280006899.01.T01:CDS 40.0%
TTCTTCCAATGAGTAAGGAG+GGG + Chr2:7757557-7757576 None:intergenic 40.0%
! AATGGTGGAAATGGGAGAAT+TGG - Chr2:7755640-7755659 MsG0280006899.01.T01:CDS 40.0%
! CGTTCTATGAATGGTGGAAA+TGG - Chr2:7755631-7755650 MsG0280006899.01.T01:CDS 40.0%
! GAAAAAGTCCGAACCGTTTT+AGG - Chr2:7755308-7755327 MsG0280006899.01.T01:CDS 40.0%
! TGAGTTCATCTGAAATCACC+TGG - Chr2:7757763-7757782 MsG0280006899.01.T01:CDS 40.0%
!! ACAATAAGGAGTGTCACCTT+GGG + Chr2:7756017-7756036 None:intergenic 40.0%
!! TACAATAAGGAGTGTCACCT+TGG + Chr2:7756018-7756037 None:intergenic 40.0%
!! TTATGGCTTTGAAGCAATGG+AGG + Chr2:7757507-7757526 None:intergenic 40.0%
AGAACTTGTCACATTCGTGC+AGG + Chr2:7755699-7755718 None:intergenic 45.0%
ATAATCAAATCGCTAGGCGG+CGG + Chr2:7757801-7757820 None:intergenic 45.0%
ATTGGGAATGGGCAATACAG+AGG - Chr2:7757819-7757838 MsG0280006899.01.T01:CDS 45.0%
ATTGTCCGATCTTGATCCAC+CGG + Chr2:7757041-7757060 None:intergenic 45.0%
CCGCCTAGCGATTTGATTAT+TGG - Chr2:7757801-7757820 MsG0280006899.01.T01:CDS 45.0%
CTCATGGTCAAGACCGATAT+GGG + Chr2:7755587-7755606 None:intergenic 45.0%
CTTATTTCCGTAAGTCGCTG+AGG - Chr2:7757599-7757618 MsG0280006899.01.T01:intron 45.0%
TACTTAATAGGAGGACCCTC+AGG + Chr2:7755670-7755689 None:intergenic 45.0%
TCAAGGATTACCCCTTGAAG+AGG + Chr2:7756543-7756562 None:intergenic 45.0%
TCTTACCCCTCCTTACTCAT+TGG - Chr2:7757549-7757568 MsG0280006899.01.T01:intron 45.0%
TGAAGACCCCTTAGAGTAGT+GGG - Chr2:7757107-7757126 MsG0280006899.01.T01:CDS 45.0%
TGAAGCGGAATCAAAGAACC+AGG + Chr2:7755896-7755915 None:intergenic 45.0%
TGAGGGACCTATTTCAGAAG+AGG - Chr2:7755280-7755299 MsG0280006899.01.T01:CDS 45.0%
TTCCTACCTATACCTGCTGA+GGG - Chr2:7756962-7756981 MsG0280006899.01.T01:intron 45.0%
TTGCACACAATCCAAATCCG+TGG - Chr2:7757084-7757103 MsG0280006899.01.T01:CDS 45.0%
! AATGTCGAAGAGAGCACAAG+GGG + Chr2:7757530-7757549 None:intergenic 45.0%
! AGAATGTCGAAGAGAGCACA+AGG + Chr2:7757532-7757551 None:intergenic 45.0%
! GAATGTCGAAGAGAGCACAA+GGG + Chr2:7757531-7757550 None:intergenic 45.0%
! GCACTTGAGCAACTTTTAGG+TGG - Chr2:7756448-7756467 MsG0280006899.01.T01:intron 45.0%
! GGAGTATTCTGTATGTCTCC+TGG - Chr2:7755875-7755894 MsG0280006899.01.T01:intron 45.0%
!! AGAAGGAAGAGAGAAGTACC+TGG + Chr2:7757634-7757653 None:intergenic 45.0%
!! GGGTTATGGCTTTGAAGCAA+TGG + Chr2:7757510-7757529 None:intergenic 45.0%
!! TCGAGAGCCTCTTCTGAAAT+AGG + Chr2:7755290-7755309 None:intergenic 45.0%
!! TTCTGAAATAGGTCCCTCAG+TGG + Chr2:7755279-7755298 None:intergenic 45.0%
AAGGCTTCCTTGTCCACTGA+GGG - Chr2:7755263-7755282 MsG0280006899.01.T01:CDS 50.0%
AATAGGTCCCTCAGTGGACA+AGG + Chr2:7755273-7755292 None:intergenic 50.0%
ACCTGTCCCACTACTCTAAG+GGG + Chr2:7757116-7757135 None:intergenic 50.0%
AGTCACGCAGTTAGCCACAT+CGG - Chr2:7757012-7757031 MsG0280006899.01.T01:intron 50.0%
CACCTGTCCCACTACTCTAA+GGG + Chr2:7757117-7757136 None:intergenic 50.0%
CCATATCGGTCTTGACCATG+AGG - Chr2:7755585-7755604 MsG0280006899.01.T01:CDS 50.0%
CCTCATGGTCAAGACCGATA+TGG + Chr2:7755588-7755607 None:intergenic 50.0%
GATCTGTCCTCAGCGACTTA+CGG + Chr2:7757609-7757628 None:intergenic 50.0%
GGGAGAATTGGAACTCCTGA+GGG - Chr2:7755652-7755671 MsG0280006899.01.T01:CDS 50.0%
GGGTTGAAGCCTTCCCATAT+CGG - Chr2:7755571-7755590 MsG0280006899.01.T01:CDS 50.0%
GTGAAGACCCCTTAGAGTAG+TGG - Chr2:7757106-7757125 MsG0280006899.01.T01:CDS 50.0%
GTTCCTACCTATACCTGCTG+AGG - Chr2:7756961-7756980 MsG0280006899.01.T01:intron 50.0%
TCCTACCTATACCTGCTGAG+GGG - Chr2:7756963-7756982 MsG0280006899.01.T01:intron 50.0%
TGGAGGTTGCCATCCCTATT+TGG + Chr2:7757490-7757509 None:intergenic 50.0%
TGGGAGAATTGGAACTCCTG+AGG - Chr2:7755651-7755670 MsG0280006899.01.T01:CDS 50.0%
TGGTCAAGACCGATATGGGA+AGG + Chr2:7755583-7755602 None:intergenic 50.0%
! ACTCTAAGGGGTCTTCACCA+CGG + Chr2:7757104-7757123 None:intergenic 50.0%
! CGGCGGAATCTTTTCTAACC+AGG + Chr2:7757784-7757803 None:intergenic 50.0%
! GAAGAGAGCACAAGGGGTTA+TGG + Chr2:7757524-7757543 None:intergenic 50.0%
! GGTTGATGCGGCCGTAATAA+CGG - Chr2:7756125-7756144 MsG0280006899.01.T01:intron 50.0%
!! AGGGGTTGGTGAAGGGATTA+GGG - Chr2:7756981-7757000 MsG0280006899.01.T01:intron 50.0%
!! GTGGACAAATGGGGTTGATG+CGG - Chr2:7756113-7756132 MsG0280006899.01.T01:intron 50.0%
AACTGCATTGCCGTGGCAGA+TGG - Chr2:7755550-7755569 MsG0280006899.01.T01:CDS 55.0%
ACCAACCCCTCAGCAGGTAT+AGG + Chr2:7756971-7756990 None:intergenic 55.0%
ACCCCTCAGCAGGTATAGGT+AGG + Chr2:7756967-7756986 None:intergenic 55.0%
ACCTATACCTGCTGAGGGGT+TGG - Chr2:7756967-7756986 MsG0280006899.01.T01:intron 55.0%
ACTGCATTGCCGTGGCAGAT+GGG - Chr2:7755551-7755570 MsG0280006899.01.T01:CDS 55.0%
AGGCTTCAACCCATCTGCCA+CGG + Chr2:7755563-7755582 None:intergenic 55.0%
AGGGGTCTTCACCACGGATT+TGG + Chr2:7757098-7757117 None:intergenic 55.0%
CAAGGCTTCCTTGTCCACTG+AGG - Chr2:7755262-7755281 MsG0280006899.01.T01:CDS 55.0%
CTTGTCATTGGTACTGCCGC+TGG - Chr2:7756723-7756742 MsG0280006899.01.T01:intron 55.0%
GCACCTGTCCCACTACTCTA+AGG + Chr2:7757118-7757137 None:intergenic 55.0%
GCGTCATGCGATCTATCCCA+AGG - Chr2:7755998-7756017 MsG0280006899.01.T01:intron 55.0%
GTAGTGCTTGAGGAGCTGCA+CGG - Chr2:7757738-7757757 MsG0280006899.01.T01:intron 55.0%
TAGTGCTTGAGGAGCTGCAC+GGG - Chr2:7757739-7757758 MsG0280006899.01.T01:intron 55.0%
TCGCTGAGGACAGATCTTCC+AGG - Chr2:7757613-7757632 MsG0280006899.01.T01:intron 55.0%
TCTTGACCATGAGGCGCAAC+TGG - Chr2:7755594-7755613 MsG0280006899.01.T01:CDS 55.0%
TGGGATAGATCGCATGACGC+AGG + Chr2:7755998-7756017 None:intergenic 55.0%
! ACCCCTTAGAGTAGTGGGAC+AGG - Chr2:7757112-7757131 MsG0280006899.01.T01:CDS 55.0%
! AGAGTAGTGGGACAGGTGCA+TGG - Chr2:7757119-7757138 MsG0280006899.01.T01:CDS 55.0%
!! GAGGGGTTGGTGAAGGGATT+AGG - Chr2:7756980-7756999 MsG0280006899.01.T01:intron 55.0%
CAGTTAGCCACATCGGCGTC+CGG - Chr2:7757019-7757038 MsG0280006899.01.T01:intron 60.0%
GGCGTCCGGTGGATCAAGAT+CGG - Chr2:7757033-7757052 MsG0280006899.01.T01:intron 60.0%
TGGGACAGGTGCATGGCAGT+AGG - Chr2:7757126-7757145 MsG0280006899.01.T01:CDS 60.0%
!! ACCTGCTGAGGGGTTGGTGA+AGG - Chr2:7756973-7756992 MsG0280006899.01.T01:intron 60.0%
!! CCTGCTGAGGGGTTGGTGAA+GGG - Chr2:7756974-7756993 MsG0280006899.01.T01:intron 60.0%
AGGCGCAACTGGCGCGAAGT+TGG - Chr2:7755605-7755624 MsG0280006899.01.T01:CDS 65.0%
CCCTTCACCAACCCCTCAGC+AGG + Chr2:7756977-7756996 None:intergenic 65.0%
TGATCCACCGGACGCCGATG+TGG + Chr2:7757029-7757048 None:intergenic 65.0%
TTAGCCACATCGGCGTCCGG+TGG - Chr2:7757022-7757041 MsG0280006899.01.T01:intron 65.0%
TTCGCGCCAGTTGCGCCTCA+TGG + Chr2:7755603-7755622 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 7755230 7757860 7755230 ID=MsG0280006899.01;Name=MsG0280006899.01
Chr2 mRNA 7755230 7757860 7755230 ID=MsG0280006899.01.T01;Parent=MsG0280006899.01;Name=MsG0280006899.01.T01;_AED=0.40;_eAED=0.40;_QI=0|0|0|1|1|1|5|0|245
Chr2 exon 7757761 7757860 7757761 ID=MsG0280006899.01.T01:exon:2265;Parent=MsG0280006899.01.T01
Chr2 exon 7757370 7757521 7757370 ID=MsG0280006899.01.T01:exon:2264;Parent=MsG0280006899.01.T01
Chr2 exon 7757071 7757218 7757071 ID=MsG0280006899.01.T01:exon:2263;Parent=MsG0280006899.01.T01
Chr2 exon 7755456 7755674 7755456 ID=MsG0280006899.01.T01:exon:2262;Parent=MsG0280006899.01.T01
Chr2 exon 7755230 7755348 7755230 ID=MsG0280006899.01.T01:exon:2261;Parent=MsG0280006899.01.T01
Chr2 CDS 7757761 7757860 7757761 ID=MsG0280006899.01.T01:cds;Parent=MsG0280006899.01.T01
Chr2 CDS 7757370 7757521 7757370 ID=MsG0280006899.01.T01:cds;Parent=MsG0280006899.01.T01
Chr2 CDS 7757071 7757218 7757071 ID=MsG0280006899.01.T01:cds;Parent=MsG0280006899.01.T01
Chr2 CDS 7755456 7755674 7755456 ID=MsG0280006899.01.T01:cds;Parent=MsG0280006899.01.T01
Chr2 CDS 7755230 7755348 7755230 ID=MsG0280006899.01.T01:cds;Parent=MsG0280006899.01.T01
Gene Sequence

>MsG0280006899.01.T01

ATGCCGTATATTCAGAAATTGTATGACGTCTGCAAGGCTTCCTTGTCCACTGAGGGACCTATTTCAGAAGAGGCTCTCGAAAAAGTCCGAACCGTTTTAGATGGGTTGAAGCCTTCCCATATCGGTCTTGACCATGAGGCGCAACTGGCGCGAAGTTGGAAACGTTCTATGAATGGTGGAAATGGGAGAATTGGAACTCCTGAGGGTCCTCCTATTAAGTACATTCACCTGCACGAATGTGACAAGTTCTCTATTGGAGTATTCTGTATGTCTCCTGGTTCTTTGATTCCGCTTCATGATCATCCTAGAATGACTGTTTTAAGCAAGGTTCTCTATGGTTCGTTGCATGTGAAATCATTTGATTGGATCGACTTGCCTGCGTCATGCGATCTATCCCAAGCTGCAGCGAGACCAGCAAAACTTGTCAAAGATTGTCAGATGACTGCTCCTTGTGACACAACAATTCTTTATCCAAATAGGGATGGCAACCTCCATTGCTTCAAAGCCATAACCCCTTGTGCTCTCTTCGACATTCTTACCCCTCCTTACTCATTGGAAGAAGAAGTAAATGGACGAAACTGCTCTTATTTCCGTAAGTCGCTGAGGACAGATCTTCCAGTGCTTGAGGAGCTGCACGGGATGAGTTCATCTGAAATCACCTGGTTAGAAAAGATTCCGCCGCCTAGCGATTTGATTATTGGGAATGGGCAATACAGAGGCCCTAATATTCGGCGATGA
Protein sequence

>MsG0280006899.01.T01

MPYIQKLYDVCKASLSTEGPISEEALEKVRTVLDGLKPSHIGLDHEAQLARSWKRSMNGGNGRIGTPEGPPIKYIHLHECDKFSIGVFCMSPGSLIPLHDHPRMTVLSKVLYGSLHVKSFDWIDLPASCDLSQAAARPAKLVKDCQMTAPCDTTILYPNRDGNLHCFKAITPCALFDILTPPYSLEEEVNGRNCSYFRKSLRTDLPVLEELHGMSSSEITWLEKIPPPSDLIIGNGQYRGPNIRR*