Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007212.01.T01 | XP_013462770.1 | 93.434 | 396 | 14 | 1 | 1 | 384 | 1 | 396 | 0 | 712 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007212.01.T01 | Q94B38 | 77.368 | 380 | 76 | 3 | 3 | 380 | 14 | 385 | 0 | 583 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007212.01.T01 | A0A072VF80 | 93.434 | 396 | 14 | 1 | 1 | 384 | 1 | 396 | 0.0 | 712 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180004376.01 | MsG0280007212.01 | 0.848004 | 8.075487e-60 | 1.461330e-56 |
| MsG0280007212.01 | MsG0280007214.01 | 0.929507 | 6.294929e-93 | 3.529165e-88 |
| MsG0280007212.01 | MsG0280007215.01 | 0.912720 | 1.409644e-83 | 3.215498e-79 |
| MsG0280007212.01 | MsG0380017934.01 | 0.842603 | 2.338483e-58 | 3.563992e-55 |
| MsG0280007212.01 | MsG0480021267.01 | 0.876940 | 9.361036e-69 | 4.622938e-65 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0280007628.01 | MsG0280007212.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007212.01.T01 | MTR_2g022700 | 93.434 | 396 | 14 | 1 | 1 | 384 | 1 | 396 | 0.0 | 712 |
| MsG0280007212.01.T01 | MTR_4g131800 | 75.000 | 416 | 66 | 3 | 1 | 381 | 1 | 413 | 0.0 | 571 |
| MsG0280007212.01.T01 | MTR_3g049400 | 74.933 | 375 | 78 | 6 | 19 | 382 | 31 | 400 | 0.0 | 545 |
| MsG0280007212.01.T01 | MTR_2g029180 | 49.852 | 337 | 156 | 7 | 47 | 380 | 66 | 392 | 2.63e-96 | 295 |
| MsG0280007212.01.T01 | MTR_4g088350 | 38.677 | 393 | 215 | 8 | 6 | 383 | 8 | 389 | 9.37e-79 | 249 |
| MsG0280007212.01.T01 | MTR_5g044220 | 40.351 | 342 | 179 | 7 | 57 | 384 | 65 | 395 | 6.92e-76 | 242 |
| MsG0280007212.01.T01 | MTR_6g005480 | 44.343 | 327 | 163 | 5 | 60 | 380 | 92 | 405 | 7.71e-75 | 239 |
| MsG0280007212.01.T01 | MTR_4g105630 | 41.695 | 295 | 169 | 2 | 88 | 380 | 81 | 374 | 6.80e-69 | 223 |
| MsG0280007212.01.T01 | MTR_4g105630 | 41.237 | 291 | 168 | 2 | 88 | 376 | 81 | 370 | 4.59e-66 | 216 |
| MsG0280007212.01.T01 | MTR_3g077640 | 39.420 | 345 | 192 | 4 | 40 | 382 | 72 | 401 | 1.34e-65 | 216 |
| MsG0280007212.01.T01 | MTR_4g088350 | 41.887 | 265 | 145 | 4 | 119 | 379 | 15 | 274 | 6.93e-63 | 204 |
| MsG0280007212.01.T01 | MTR_4g105630 | 38.174 | 241 | 146 | 2 | 88 | 326 | 81 | 320 | 1.11e-44 | 159 |
| MsG0280007212.01.T01 | MTR_4g105630 | 40.000 | 215 | 127 | 1 | 88 | 300 | 81 | 295 | 3.32e-42 | 152 |
| MsG0280007212.01.T01 | MTR_3g072380 | 27.273 | 308 | 184 | 8 | 99 | 386 | 22 | 309 | 1.75e-23 | 100 |
| MsG0280007212.01.T01 | MTR_1g030320 | 26.885 | 305 | 184 | 7 | 99 | 383 | 21 | 306 | 3.39e-23 | 100 |
| MsG0280007212.01.T01 | MTR_3g072380 | 30.952 | 168 | 106 | 3 | 99 | 259 | 22 | 186 | 3.54e-17 | 80.9 |
| MsG0280007212.01.T01 | MTR_3g070000 | 23.397 | 312 | 220 | 11 | 84 | 384 | 17 | 320 | 1.89e-15 | 77.4 |
| MsG0280007212.01.T01 | MTR_4g018760 | 23.390 | 295 | 215 | 6 | 98 | 385 | 19 | 309 | 3.18e-15 | 76.6 |
| MsG0280007212.01.T01 | MTR_5g081710 | 23.490 | 298 | 211 | 9 | 97 | 384 | 14 | 304 | 6.06e-14 | 72.8 |
| MsG0280007212.01.T01 | MTR_3g462070 | 21.160 | 293 | 220 | 6 | 99 | 384 | 17 | 305 | 1.69e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007212.01.T01 | AT1G61800 | 77.083 | 384 | 78 | 3 | 3 | 384 | 14 | 389 | 0.0 | 587 |
| MsG0280007212.01.T01 | AT1G61800 | 77.368 | 380 | 76 | 3 | 3 | 380 | 14 | 385 | 0.0 | 583 |
| MsG0280007212.01.T01 | AT5G54800 | 74.934 | 379 | 77 | 5 | 10 | 382 | 21 | 387 | 0.0 | 543 |
| MsG0280007212.01.T01 | AT5G17630 | 46.779 | 357 | 184 | 5 | 30 | 383 | 51 | 404 | 1.45e-108 | 327 |
| MsG0280007212.01.T01 | AT4G03950 | 55.446 | 303 | 74 | 6 | 92 | 391 | 18 | 262 | 2.64e-92 | 280 |
| MsG0280007212.01.T01 | AT5G46110 | 42.953 | 298 | 161 | 4 | 90 | 383 | 106 | 398 | 1.40e-77 | 246 |
| MsG0280007212.01.T01 | AT5G46110 | 42.953 | 298 | 161 | 4 | 90 | 383 | 106 | 398 | 1.51e-77 | 247 |
| MsG0280007212.01.T01 | AT5G46110 | 43.253 | 289 | 155 | 4 | 99 | 383 | 2 | 285 | 3.48e-77 | 242 |
| MsG0280007212.01.T01 | AT5G46110 | 41.611 | 298 | 154 | 5 | 90 | 383 | 106 | 387 | 2.55e-72 | 233 |
| MsG0280007212.01.T01 | AT3G01550 | 40.789 | 304 | 177 | 2 | 80 | 380 | 67 | 370 | 1.89e-66 | 217 |
| MsG0280007212.01.T01 | AT3G01550 | 39.803 | 304 | 175 | 3 | 80 | 380 | 67 | 365 | 2.06e-62 | 206 |
| MsG0280007212.01.T01 | AT5G33320 | 41.356 | 295 | 170 | 2 | 90 | 382 | 106 | 399 | 3.00e-62 | 207 |
| MsG0280007212.01.T01 | AT1G77610 | 26.263 | 297 | 194 | 5 | 99 | 382 | 16 | 300 | 3.70e-23 | 100 |
| MsG0280007212.01.T01 | AT1G21870 | 26.263 | 297 | 194 | 6 | 99 | 382 | 22 | 306 | 3.41e-22 | 97.4 |
| MsG0280007212.01.T01 | AT5G05820 | 23.920 | 301 | 215 | 9 | 92 | 384 | 12 | 306 | 2.20e-16 | 80.1 |
| MsG0280007212.01.T01 | AT3G11320 | 23.256 | 301 | 217 | 9 | 92 | 384 | 12 | 306 | 1.30e-14 | 74.7 |
| MsG0280007212.01.T01 | AT1G12500 | 23.986 | 296 | 212 | 8 | 97 | 384 | 64 | 354 | 1.04e-11 | 66.6 |
Find 77 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGTCACATTCTTTCTTT+TGG | 0.109741 | 2:-12007888 | None:intergenic |
| CTAAAGTTAACTTGGATTTC+TGG | 0.136067 | 2:+12008161 | MsG0280007212.01.T01:CDS |
| AATTCTTGTTTCAGGATTTA+TGG | 0.170342 | 2:+12008877 | MsG0280007212.01.T01:intron |
| CTCTCATTGTTGCCAATAAT+TGG | 0.171795 | 2:+12008739 | MsG0280007212.01.T01:CDS |
| CAAATTTGGCATTTGTATTC+AGG | 0.181063 | 2:+12008912 | MsG0280007212.01.T01:CDS |
| CAGAAATCCAAGTTAACTTT+AGG | 0.181603 | 2:-12008160 | None:intergenic |
| GGGAGCTATGATATCAAATT+TGG | 0.191205 | 2:+12008898 | MsG0280007212.01.T01:CDS |
| ATCTTTATAGTTTATACTTT+GGG | 0.266130 | 2:+12009499 | MsG0280007212.01.T01:CDS |
| GGAGCAGCTATTGCAATTCT+TGG | 0.270973 | 2:+12009423 | MsG0280007212.01.T01:CDS |
| ATGACACTTGATTATATAAA+TGG | 0.296751 | 2:-12009278 | None:intergenic |
| TGAAAGATAGAGAGGTTTCT+TGG | 0.315407 | 2:-12007834 | None:intergenic |
| AGTGCGCAACCACCAATTAT+TGG | 0.320937 | 2:-12008751 | None:intergenic |
| TGTTAATCTCATGGGCTACT+AGG | 0.323213 | 2:+12008125 | MsG0280007212.01.T01:CDS |
| CAACCAGCAGTCCAAACTTT+AGG | 0.328755 | 2:-12009052 | None:intergenic |
| ATTTCCTATGCTAAATGTTA+AGG | 0.334042 | 2:-12009325 | None:intergenic |
| ATTCTTGTTTCAGGATTTAT+GGG | 0.368019 | 2:+12008878 | MsG0280007212.01.T01:intron |
| TATGCTTACCAGACAAAATT+CGG | 0.368126 | 2:-12009100 | None:intergenic |
| CTGTGGAGGGTCCTAAAGTT+TGG | 0.369475 | 2:+12009041 | MsG0280007212.01.T01:CDS |
| CTCTCATTATGTTAATCTCA+TGG | 0.373482 | 2:+12008116 | MsG0280007212.01.T01:CDS |
| AGAAATCCAAGTTAACTTTA+GGG | 0.384705 | 2:-12008159 | None:intergenic |
| CAAACAGCTGTGTCTCAAAT+TGG | 0.392629 | 2:+12009076 | MsG0280007212.01.T01:CDS |
| AGCTGCTCCAAGAGCATTGA+TGG | 0.393145 | 2:-12009409 | None:intergenic |
| GGCAACAATGAGAGGTAAAC+TGG | 0.394912 | 2:-12008730 | None:intergenic |
| GAACTCAGTTTCAATATGAT+TGG | 0.398745 | 2:+12008787 | MsG0280007212.01.T01:CDS |
| AGTGAATGAAACTGCTACTT+TGG | 0.405993 | 2:-12008632 | None:intergenic |
| TTTCCTATGCTAAATGTTAA+GGG | 0.408792 | 2:-12009324 | None:intergenic |
| GATCAAGTACATAATTTAGT+AGG | 0.409292 | 2:-12009479 | None:intergenic |
| GATCTTTATAGTTTATACTT+TGG | 0.422634 | 2:+12009498 | MsG0280007212.01.T01:CDS |
| GGTCCTAAAGTTTGGACTGC+TGG | 0.426259 | 2:+12009049 | MsG0280007212.01.T01:CDS |
| GCAGCTCAAAAGCTCAAGAT+TGG | 0.427817 | 2:+12007977 | MsG0280007212.01.T01:CDS |
| TCCACTTTATCCTTAGCTGC+TGG | 0.430126 | 2:+12008091 | MsG0280007212.01.T01:CDS |
| TTCTCAAAGAAAGGAATGAA+TGG | 0.434361 | 2:+12008941 | MsG0280007212.01.T01:CDS |
| AGAATTGAAAATTGAGACCT+TGG | 0.444612 | 2:-12007761 | None:intergenic |
| CTTCAACCCATCAATGCTCT+TGG | 0.453683 | 2:+12009402 | MsG0280007212.01.T01:CDS |
| GTAGCTGTGGCACACACAAT+TGG | 0.470268 | 2:+12008583 | MsG0280007212.01.T01:CDS |
| GTTCTAAGTTGTTGATGGAA+TGG | 0.471875 | 2:-12007606 | None:intergenic |
| ACCAGCAGCTAAGGATAAAG+TGG | 0.472955 | 2:-12008092 | None:intergenic |
| GTTAATCTCATGGGCTACTA+GGG | 0.473011 | 2:+12008126 | MsG0280007212.01.T01:CDS |
| TGAGGCCCCTAAAGTTAACT+TGG | 0.473088 | 2:+12008153 | MsG0280007212.01.T01:CDS |
| CATCATCAAGAGTGGAGAAC+CGG | 0.480485 | 2:+12008657 | MsG0280007212.01.T01:CDS |
| TAAATGAATGAACACTAAGT+TGG | 0.490880 | 2:-12007660 | None:intergenic |
| TAGCTGTGGCACACACAATT+GGG | 0.496344 | 2:+12008584 | MsG0280007212.01.T01:CDS |
| AGGAATATATTCTCAAAGAA+AGG | 0.498153 | 2:+12008932 | MsG0280007212.01.T01:CDS |
| ATGAATGGGATGAGTGTTAG+TGG | 0.502849 | 2:+12008956 | MsG0280007212.01.T01:CDS |
| TGGCACCTTCATCTATTCAC+AGG | 0.508331 | 2:+12009443 | MsG0280007212.01.T01:CDS |
| TCTCAAAGAAAGGAATGAAT+GGG | 0.514111 | 2:+12008942 | MsG0280007212.01.T01:CDS |
| TGAGTGGATGAAAGATAGAG+AGG | 0.518129 | 2:-12007842 | None:intergenic |
| CCCTCCACAGCAATAGCAAA+AGG | 0.519923 | 2:-12009028 | None:intergenic |
| CAGCTCAAAAGCTCAAGATT+GGG | 0.521252 | 2:+12007978 | MsG0280007212.01.T01:CDS |
| TCTCATTATGTTAATCTCAT+GGG | 0.522285 | 2:+12008117 | MsG0280007212.01.T01:CDS |
| AATGAGAGAACCAGCAGCTA+AGG | 0.537711 | 2:-12008101 | None:intergenic |
| TCAAAATGTTGAACAAAACA+TGG | 0.542137 | 2:+12007793 | MsG0280007212.01.T01:CDS |
| TCATTGTTGCCAATAATTGG+TGG | 0.544739 | 2:+12008742 | MsG0280007212.01.T01:CDS |
| AACATTGAACTTCCTAGTGA+AGG | 0.545080 | 2:+12007953 | MsG0280007212.01.T01:CDS |
| CTAGTATCAAGATTCATGCT+TGG | 0.552737 | 2:+12008691 | MsG0280007212.01.T01:CDS |
| CTAAAGTTTGGACTGCTGGT+TGG | 0.555262 | 2:+12009053 | MsG0280007212.01.T01:CDS |
| GACAGAATGTCAAGCTTATG+AGG | 0.561271 | 2:+12007904 | MsG0280007212.01.T01:CDS |
| GAAATCCAAGTTAACTTTAG+GGG | 0.565634 | 2:-12008158 | None:intergenic |
| CTTATGAGGCTGATAGATCA+AGG | 0.566563 | 2:+12007918 | MsG0280007212.01.T01:CDS |
| TCTCCCTTAACATTTAGCAT+AGG | 0.566878 | 2:+12009321 | MsG0280007212.01.T01:CDS |
| GTGGAAGTGAGCCAAGGGTA+AGG | 0.571201 | 2:-12008073 | None:intergenic |
| ATGGGCTACTAGGGTTGCTG+AGG | 0.583408 | 2:+12008135 | MsG0280007212.01.T01:CDS |
| ATTGGGTATGCAGGTAGCTG+TGG | 0.585242 | 2:+12008570 | MsG0280007212.01.T01:intron |
| ATTCACCTGTGAATAGATGA+AGG | 0.585857 | 2:-12009448 | None:intergenic |
| GATACTAGCACACTGAAAGC+CGG | 0.587523 | 2:-12008676 | None:intergenic |
| TTCACTCACATCATCAAGAG+TGG | 0.593759 | 2:+12008649 | MsG0280007212.01.T01:CDS |
| CAAGTACATCATCACTTCCA+AGG | 0.595632 | 2:+12007744 | MsG0280007212.01.T01:CDS |
| TGGTGTGTGAAAGATAATGA+TGG | 0.599746 | 2:-12009379 | None:intergenic |
| AGTTCAATGTTAATCTCTAG+TGG | 0.602873 | 2:-12007941 | None:intergenic |
| CAATTATTGGCAACAATGAG+AGG | 0.616851 | 2:-12008738 | None:intergenic |
| GAGATTGAAACATTATGTGA+GGG | 0.618972 | 2:+12009566 | MsG0280007212.01.T01:CDS |
| TGAGATTGAAACATTATGTG+AGG | 0.625337 | 2:+12009565 | MsG0280007212.01.T01:CDS |
| GATAAAGTGGAAGTGAGCCA+AGG | 0.631302 | 2:-12008079 | None:intergenic |
| CAAAATGTTGAACAAAACAT+GGG | 0.645558 | 2:+12007794 | MsG0280007212.01.T01:CDS |
| GCTGCTCCAAGAGCATTGAT+GGG | 0.645674 | 2:-12009408 | None:intergenic |
| ATAAAGTGGAAGTGAGCCAA+GGG | 0.650767 | 2:-12008078 | None:intergenic |
| AGAGCATTGATGGGTTGAAG+TGG | 0.671770 | 2:-12009399 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GCTTTAATTAATAATAATTT+GGG | + | Chr2:12009206-12009225 | MsG0280007212.01.T01:intron | 10.0% |
| !! | TTTATTACTTAAATTATTAC+AGG | + | Chr2:12008441-12008460 | MsG0280007212.01.T01:intron | 10.0% |
| !!! | ATTTTTTTTTTTATGTTTAC+AGG | + | Chr2:12009229-12009248 | MsG0280007212.01.T01:intron | 10.0% |
| !! | AATTAGAATGAAAAGAAAAT+GGG | - | Chr2:12008216-12008235 | None:intergenic | 15.0% |
| !! | ATCTTTATAGTTTATACTTT+GGG | + | Chr2:12009499-12009518 | MsG0280007212.01.T01:CDS | 15.0% |
| !! | CGCTTTAATTAATAATAATT+TGG | + | Chr2:12009205-12009224 | MsG0280007212.01.T01:intron | 15.0% |
| !! | ACCTAAGAAATTTCAAAATT+GGG | + | Chr2:12008553-12008572 | MsG0280007212.01.T01:intron | 20.0% |
| !! | ATGACACTTGATTATATAAA+TGG | - | Chr2:12009281-12009300 | None:intergenic | 20.0% |
| !! | ATTAGAATGAAAAGAAAATG+GGG | - | Chr2:12008215-12008234 | None:intergenic | 20.0% |
| !! | CAATTAGAATGAAAAGAAAA+TGG | - | Chr2:12008217-12008236 | None:intergenic | 20.0% |
| !! | GATCTTTATAGTTTATACTT+TGG | + | Chr2:12009498-12009517 | MsG0280007212.01.T01:CDS | 20.0% |
| !! | TATACTAGTTCAAATTTCTT+CGG | + | Chr2:12009179-12009198 | MsG0280007212.01.T01:intron | 20.0% |
| !!! | TTTTTTTTATGTTTACAGGT+GGG | + | Chr2:12009233-12009252 | MsG0280007212.01.T01:intron | 20.0% |
| !!! | TTTTTTTTTATGTTTACAGG+TGG | + | Chr2:12009232-12009251 | MsG0280007212.01.T01:intron | 20.0% |
| ! | AGAAATCCAAGTTAACTTTA+GGG | - | Chr2:12008162-12008181 | None:intergenic | 25.0% |
| ! | AGGAATATATTCTCAAAGAA+AGG | + | Chr2:12008932-12008951 | MsG0280007212.01.T01:CDS | 25.0% |
| ! | ATTTCCTATGCTAAATGTTA+AGG | - | Chr2:12009328-12009347 | None:intergenic | 25.0% |
| ! | CAAAATGTTGAACAAAACAT+GGG | + | Chr2:12007794-12007813 | MsG0280007212.01.T01:CDS | 25.0% |
| ! | CACCTAAGAAATTTCAAAAT+TGG | + | Chr2:12008552-12008571 | MsG0280007212.01.T01:intron | 25.0% |
| ! | GATCAAGTACATAATTTAGT+AGG | - | Chr2:12009482-12009501 | None:intergenic | 25.0% |
| ! | TAAATGAATGAACACTAAGT+TGG | - | Chr2:12007663-12007682 | None:intergenic | 25.0% |
| ! | TCAAAATGTTGAACAAAACA+TGG | + | Chr2:12007793-12007812 | MsG0280007212.01.T01:CDS | 25.0% |
| ! | TCTCATTATGTTAATCTCAT+GGG | + | Chr2:12008117-12008136 | MsG0280007212.01.T01:CDS | 25.0% |
| ! | TTTCCTATGCTAAATGTTAA+GGG | - | Chr2:12009327-12009346 | None:intergenic | 25.0% |
| !! | AATTCTTGTTTCAGGATTTA+TGG | + | Chr2:12008877-12008896 | MsG0280007212.01.T01:intron | 25.0% |
| !! | ATTCTTGTTTCAGGATTTAT+GGG | + | Chr2:12008878-12008897 | MsG0280007212.01.T01:intron | 25.0% |
| !! | GATTTTTCTTACAGGAAAAA+GGG | - | Chr2:12008191-12008210 | None:intergenic | 25.0% |
| !! | TACAATATCAATGCTCTAAA+TGG | + | Chr2:12008851-12008870 | MsG0280007212.01.T01:intron | 25.0% |
| !! | TGATTTTTCTTACAGGAAAA+AGG | - | Chr2:12008192-12008211 | None:intergenic | 25.0% |
| !!! | ACCCAATTTTGAAATTTCTT+AGG | - | Chr2:12008557-12008576 | None:intergenic | 25.0% |
| !!! | GTTTTGTTCAACATTTTGAA+TGG | - | Chr2:12007792-12007811 | None:intergenic | 25.0% |
| AATTTCAAAATTGGGTATGC+AGG | + | Chr2:12008561-12008580 | MsG0280007212.01.T01:intron | 30.0% | |
| AGAATTGAAAATTGAGACCT+TGG | - | Chr2:12007764-12007783 | None:intergenic | 30.0% | |
| AGTTCAATGTTAATCTCTAG+TGG | - | Chr2:12007944-12007963 | None:intergenic | 30.0% | |
| CAAATTTGGCATTTGTATTC+AGG | + | Chr2:12008912-12008931 | MsG0280007212.01.T01:CDS | 30.0% | |
| CAGAAATCCAAGTTAACTTT+AGG | - | Chr2:12008163-12008182 | None:intergenic | 30.0% | |
| CTCTCATTATGTTAATCTCA+TGG | + | Chr2:12008116-12008135 | MsG0280007212.01.T01:CDS | 30.0% | |
| GAAATCCAAGTTAACTTTAG+GGG | - | Chr2:12008161-12008180 | None:intergenic | 30.0% | |
| GAACTCAGTTTCAATATGAT+TGG | + | Chr2:12008787-12008806 | MsG0280007212.01.T01:CDS | 30.0% | |
| GAGATTGAAACATTATGTGA+GGG | + | Chr2:12009566-12009585 | MsG0280007212.01.T01:CDS | 30.0% | |
| GTAACTACATTTGTCAATGT+CGG | - | Chr2:12008411-12008430 | None:intergenic | 30.0% | |
| TATGCTTACCAGACAAAATT+CGG | - | Chr2:12009103-12009122 | None:intergenic | 30.0% | |
| TCTCAAAGAAAGGAATGAAT+GGG | + | Chr2:12008942-12008961 | MsG0280007212.01.T01:CDS | 30.0% | |
| TGAGATTGAAACATTATGTG+AGG | + | Chr2:12009565-12009584 | MsG0280007212.01.T01:CDS | 30.0% | |
| TTCTCAAAGAAAGGAATGAA+TGG | + | Chr2:12008941-12008960 | MsG0280007212.01.T01:CDS | 30.0% | |
| TTGAATGTAACTACATGCAT+CGG | - | Chr2:12008287-12008306 | None:intergenic | 30.0% | |
| ! | AATGGATCAATTCTTGTTTC+AGG | + | Chr2:12008869-12008888 | MsG0280007212.01.T01:intron | 30.0% |
| ! | CTAAAGTTAACTTGGATTTC+TGG | + | Chr2:12008161-12008180 | MsG0280007212.01.T01:CDS | 30.0% |
| ! | TAGCAATGCAAAATTTTGAG+TGG | - | Chr2:12007861-12007880 | None:intergenic | 30.0% |
| ! | TCTGTCACATTCTTTCTTTT+GGG | - | Chr2:12007890-12007909 | None:intergenic | 30.0% |
| ! | TGTTCAACATTTTGAATGGT+TGG | - | Chr2:12007788-12007807 | None:intergenic | 30.0% |
| ! | TTCTGTCACATTCTTTCTTT+TGG | - | Chr2:12007891-12007910 | None:intergenic | 30.0% |
| !! | GTTTTGTTCTAAGTTGTTGA+TGG | - | Chr2:12007614-12007633 | None:intergenic | 30.0% |
| AACATTGAACTTCCTAGTGA+AGG | + | Chr2:12007953-12007972 | MsG0280007212.01.T01:CDS | 35.0% | |
| ATTCACCTGTGAATAGATGA+AGG | - | Chr2:12009451-12009470 | None:intergenic | 35.0% | |
| CAATTATTGGCAACAATGAG+AGG | - | Chr2:12008741-12008760 | None:intergenic | 35.0% | |
| CTAGTATCAAGATTCATGCT+TGG | + | Chr2:12008691-12008710 | MsG0280007212.01.T01:CDS | 35.0% | |
| CTCTCATTGTTGCCAATAAT+TGG | + | Chr2:12008739-12008758 | MsG0280007212.01.T01:CDS | 35.0% | |
| GGGAGCTATGATATCAAATT+TGG | + | Chr2:12008898-12008917 | MsG0280007212.01.T01:CDS | 35.0% | |
| GTGAGCACTAAAAATAACAC+CGG | - | Chr2:12008535-12008554 | None:intergenic | 35.0% | |
| TCATTGTTGCCAATAATTGG+TGG | + | Chr2:12008742-12008761 | MsG0280007212.01.T01:CDS | 35.0% | |
| TCTCCCTTAACATTTAGCAT+AGG | + | Chr2:12009321-12009340 | MsG0280007212.01.T01:CDS | 35.0% | |
| TGAAAGATAGAGAGGTTTCT+TGG | - | Chr2:12007837-12007856 | None:intergenic | 35.0% | |
| TGGTGTGTGAAAGATAATGA+TGG | - | Chr2:12009382-12009401 | None:intergenic | 35.0% | |
| ! | AAATTGGTCCGAATTTTGTC+TGG | + | Chr2:12009092-12009111 | MsG0280007212.01.T01:CDS | 35.0% |
| ! | AATGGGGTGATTTTTCTTAC+AGG | - | Chr2:12008199-12008218 | None:intergenic | 35.0% |
| ! | AGTGAATGAAACTGCTACTT+TGG | - | Chr2:12008635-12008654 | None:intergenic | 35.0% |
| ! | TTTTTATGTTTACAGGTGGG+TGG | + | Chr2:12009236-12009255 | MsG0280007212.01.T01:intron | 35.0% |
| !! | GTTGTATTTTGCTACTTGGT+GGG | + | Chr2:12008000-12008019 | MsG0280007212.01.T01:CDS | 35.0% |
| !! | TTGGGTTGTATTTTGCTACT+TGG | + | Chr2:12007996-12008015 | MsG0280007212.01.T01:CDS | 35.0% |
| !!! | ACTTTTTCAACCTGAAGTGT+CGG | - | Chr2:12008379-12008398 | None:intergenic | 35.0% |
| ATAAAGTGGAAGTGAGCCAA+GGG | - | Chr2:12008081-12008100 | None:intergenic | 40.0% | |
| ATGAATGGGATGAGTGTTAG+TGG | + | Chr2:12008956-12008975 | MsG0280007212.01.T01:CDS | 40.0% | |
| CAAACAGCTGTGTCTCAAAT+TGG | + | Chr2:12009076-12009095 | MsG0280007212.01.T01:CDS | 40.0% | |
| CAAGTACATCATCACTTCCA+AGG | + | Chr2:12007744-12007763 | MsG0280007212.01.T01:CDS | 40.0% | |
| CAATGTGTCAGTGTAATGTC+CGG | + | Chr2:12008513-12008532 | MsG0280007212.01.T01:intron | 40.0% | |
| CAGCTCAAAAGCTCAAGATT+GGG | + | Chr2:12007978-12007997 | MsG0280007212.01.T01:CDS | 40.0% | |
| CTATGTGTCAGTATAGTGTC+TGG | + | Chr2:12008467-12008486 | MsG0280007212.01.T01:intron | 40.0% | |
| CTTATGAGGCTGATAGATCA+AGG | + | Chr2:12007918-12007937 | MsG0280007212.01.T01:CDS | 40.0% | |
| GACACATTGATATCAGTCAC+TGG | - | Chr2:12008502-12008521 | None:intergenic | 40.0% | |
| GACAGAATGTCAAGCTTATG+AGG | + | Chr2:12007904-12007923 | MsG0280007212.01.T01:CDS | 40.0% | |
| GTACTGTTGAAAAGTGGCAT+CGG | - | Chr2:12008357-12008376 | None:intergenic | 40.0% | |
| TGAGTGGATGAAAGATAGAG+AGG | - | Chr2:12007845-12007864 | None:intergenic | 40.0% | |
| TTCACTCACATCATCAAGAG+TGG | + | Chr2:12008649-12008668 | MsG0280007212.01.T01:CDS | 40.0% | |
| ! | GTTAATCTCATGGGCTACTA+GGG | + | Chr2:12008126-12008145 | MsG0280007212.01.T01:CDS | 40.0% |
| ! | GTTTTCACTTTCACTAGCAC+TGG | + | Chr2:12008236-12008255 | MsG0280007212.01.T01:intron | 40.0% |
| ! | TGAATGCTTTTCCTTACCCT+TGG | + | Chr2:12008062-12008081 | MsG0280007212.01.T01:CDS | 40.0% |
| ! | TGTTAATCTCATGGGCTACT+AGG | + | Chr2:12008125-12008144 | MsG0280007212.01.T01:CDS | 40.0% |
| !! | GGTTGTATTTTGCTACTTGG+TGG | + | Chr2:12007999-12008018 | MsG0280007212.01.T01:CDS | 40.0% |
| AATGAGAGAACCAGCAGCTA+AGG | - | Chr2:12008104-12008123 | None:intergenic | 45.0% | |
| ACCAGCAGCTAAGGATAAAG+TGG | - | Chr2:12008095-12008114 | None:intergenic | 45.0% | |
| AGTGCGCAACCACCAATTAT+TGG | - | Chr2:12008754-12008773 | None:intergenic | 45.0% | |
| CAACCAGCAGTCCAAACTTT+AGG | - | Chr2:12009055-12009074 | None:intergenic | 45.0% | |
| CATCATCAAGAGTGGAGAAC+CGG | + | Chr2:12008657-12008676 | MsG0280007212.01.T01:CDS | 45.0% | |
| CTAAAGTTTGGACTGCTGGT+TGG | + | Chr2:12009053-12009072 | MsG0280007212.01.T01:CDS | 45.0% | |
| CTTCAACCCATCAATGCTCT+TGG | + | Chr2:12009402-12009421 | MsG0280007212.01.T01:CDS | 45.0% | |
| GATAAAGTGGAAGTGAGCCA+AGG | - | Chr2:12008082-12008101 | None:intergenic | 45.0% | |
| GATACTAGCACACTGAAAGC+CGG | - | Chr2:12008679-12008698 | None:intergenic | 45.0% | |
| GCAGCTCAAAAGCTCAAGAT+TGG | + | Chr2:12007977-12007996 | MsG0280007212.01.T01:CDS | 45.0% | |
| GGAGCAGCTATTGCAATTCT+TGG | + | Chr2:12009423-12009442 | MsG0280007212.01.T01:CDS | 45.0% | |
| GGCAACAATGAGAGGTAAAC+TGG | - | Chr2:12008733-12008752 | None:intergenic | 45.0% | |
| TAGCTGTGGCACACACAATT+GGG | + | Chr2:12008584-12008603 | MsG0280007212.01.T01:CDS | 45.0% | |
| TCCACTTTATCCTTAGCTGC+TGG | + | Chr2:12008091-12008110 | MsG0280007212.01.T01:CDS | 45.0% | |
| TGAGGCCCCTAAAGTTAACT+TGG | + | Chr2:12008153-12008172 | MsG0280007212.01.T01:CDS | 45.0% | |
| TGGCACCTTCATCTATTCAC+AGG | + | Chr2:12009443-12009462 | MsG0280007212.01.T01:CDS | 45.0% | |
| ! | GTGTCGGTACTGTTGAAAAG+TGG | - | Chr2:12008363-12008382 | None:intergenic | 45.0% |
| ! | TTTTGAGCTGCTCCTTCACT+AGG | - | Chr2:12007968-12007987 | None:intergenic | 45.0% |
| !! | AGAGCATTGATGGGTTGAAG+TGG | - | Chr2:12009402-12009421 | None:intergenic | 45.0% |
| !! | TTCAACAGTACCGACACTTC+AGG | + | Chr2:12008366-12008385 | MsG0280007212.01.T01:intron | 45.0% |
| !!! | ACCTTTTGCTATTGCTGTGG+AGG | + | Chr2:12009027-12009046 | MsG0280007212.01.T01:CDS | 45.0% |
| !!! | CACACCTTTTGCTATTGCTG+TGG | + | Chr2:12009024-12009043 | MsG0280007212.01.T01:CDS | 45.0% |
| !!! | CCTTTTGCTATTGCTGTGGA+GGG | + | Chr2:12009028-12009047 | MsG0280007212.01.T01:CDS | 45.0% |
| ATTGGGTATGCAGGTAGCTG+TGG | + | Chr2:12008570-12008589 | MsG0280007212.01.T01:intron | 50.0% | |
| CCCTCCACAGCAATAGCAAA+AGG | - | Chr2:12009031-12009050 | None:intergenic | 50.0% | |
| CTGTGGAGGGTCCTAAAGTT+TGG | + | Chr2:12009041-12009060 | MsG0280007212.01.T01:CDS | 50.0% | |
| GGTCCTAAAGTTTGGACTGC+TGG | + | Chr2:12009049-12009068 | MsG0280007212.01.T01:CDS | 50.0% | |
| GTAGCTGTGGCACACACAAT+TGG | + | Chr2:12008583-12008602 | MsG0280007212.01.T01:CDS | 50.0% | |
| !! | AGCTGCTCCAAGAGCATTGA+TGG | - | Chr2:12009412-12009431 | None:intergenic | 50.0% |
| !! | GCTGCTCCAAGAGCATTGAT+GGG | - | Chr2:12009411-12009430 | None:intergenic | 50.0% |
| GTGGAAGTGAGCCAAGGGTA+AGG | - | Chr2:12008076-12008095 | None:intergenic | 55.0% | |
| ! | ATGGGCTACTAGGGTTGCTG+AGG | + | Chr2:12008135-12008154 | MsG0280007212.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 12007608 | 12009602 | 12007608 | ID=MsG0280007212.01;Name=MsG0280007212.01 |
| Chr2 | mRNA | 12007608 | 12009602 | 12007608 | ID=MsG0280007212.01.T01;Parent=MsG0280007212.01;Name=MsG0280007212.01.T01;_AED=0.49;_eAED=0.50;_QI=114|1|0.75|1|1|1|4|0|425 |
| Chr2 | exon | 12007608 | 12008198 | 12007608 | ID=MsG0280007212.01.T01:exon:393;Parent=MsG0280007212.01.T01 |
| Chr2 | exon | 12008583 | 12008808 | 12008583 | ID=MsG0280007212.01.T01:exon:394;Parent=MsG0280007212.01.T01 |
| Chr2 | exon | 12008891 | 12009113 | 12008891 | ID=MsG0280007212.01.T01:exon:395;Parent=MsG0280007212.01.T01 |
| Chr2 | exon | 12009251 | 12009602 | 12009251 | ID=MsG0280007212.01.T01:exon:396;Parent=MsG0280007212.01.T01 |
| Chr2 | five_prime_UTR | 12007608 | 12007721 | 12007608 | ID=MsG0280007212.01.T01:five_prime_utr;Parent=MsG0280007212.01.T01 |
| Chr2 | CDS | 12007722 | 12008198 | 12007722 | ID=MsG0280007212.01.T01:cds;Parent=MsG0280007212.01.T01 |
| Chr2 | CDS | 12008583 | 12008808 | 12008583 | ID=MsG0280007212.01.T01:cds;Parent=MsG0280007212.01.T01 |
| Chr2 | CDS | 12008891 | 12009113 | 12008891 | ID=MsG0280007212.01.T01:cds;Parent=MsG0280007212.01.T01 |
| Chr2 | CDS | 12009251 | 12009602 | 12009251 | ID=MsG0280007212.01.T01:cds;Parent=MsG0280007212.01.T01 |
| Gene Sequence |
| Protein sequence |
