AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007398.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007398.01.T01 MTR_2g024060 98.198 111 2 0 1 111 1 111 3.40e-76 228
MsG0280007398.01.T01 MTR_3g053230 66.372 113 36 1 1 111 1 113 5.85e-48 156
MsG0280007398.01.T01 MTR_3g053230 56.944 72 29 1 97 168 175 244 3.70e-21 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007398.01.T01 AT1G11930 75.728 103 25 0 9 111 23 125 1.73e-52 168
MsG0280007398.01.T01 AT1G11930 67.692 65 21 0 103 167 191 255 4.67e-25 97.4
MsG0280007398.01.T01 AT1G11930 75.728 103 25 0 9 111 23 125 1.87e-52 168
MsG0280007398.01.T01 AT1G11930 65.672 67 21 1 103 167 191 257 3.81e-23 92.4
MsG0280007398.01.T01 AT4G26860 63.889 108 39 0 4 111 5 112 5.02e-47 154
MsG0280007398.01.T01 AT4G26860 59.155 71 27 1 97 167 174 242 1.37e-23 93.6
MsG0280007398.01.T01 AT4G26860 63.889 108 39 0 4 111 5 112 7.85e-47 153
MsG0280007398.01.T01 AT4G26860 68.421 57 18 0 111 167 196 252 5.67e-22 89.4

Find 65 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCACCCTAAACAAATTATTT+TGG 0.189887 2:+14922147 MsG0280007398.01.T01:three_prime_UTR
AGGATTGGAACCGCAATATT+TGG 0.199745 2:+14922020 MsG0280007398.01.T01:CDS
CCATGTCATCGCGCATTTAT+AGG 0.210897 2:-14919595 None:intergenic
CCAGCCAAAATAATTTGTTT+AGG 0.256206 2:-14922151 None:intergenic
ATTTCTTTCCTTATTGGATT+TGG 0.257198 2:-14919514 None:intergenic
CAGCCAAAATAATTTGTTTA+GGG 0.260215 2:-14922150 None:intergenic
GAGTCAATTTCTTTCCTTAT+TGG 0.268153 2:-14919520 None:intergenic
AATAAAGTTAAGCCTCTTCT+TGG 0.269719 2:+14919907 MsG0280007398.01.T01:CDS
AGTTCTGGTTCAGTATAAAA+AGG 0.284236 2:-14922264 None:intergenic
AAAGTATACTATCTTAGTTC+TGG 0.305786 2:-14922279 None:intergenic
ACAACCTTGTATAGTCATTA+TGG 0.307083 2:+14922329 MsG0280007398.01.T01:three_prime_UTR
AGCAGCTACTTCTCTTCTTT+CGG 0.310267 2:-14922059 None:intergenic
ACAAACTTCACTTCTACATT+TGG 0.318218 2:-14921821 None:intergenic
AAATTATTGAATGGGCCATT+GGG 0.398398 2:-14919544 None:intergenic
AAAATGCCACTCAATATCTT+CGG 0.403414 2:-14919866 None:intergenic
CGGCGCAGCGGCGTCGCTAA+AGG 0.404321 2:+14919663 MsG0280007398.01.T01:CDS
AGATGGGAAGTACAACTGTT+AGG 0.411926 2:+14922000 MsG0280007398.01.T01:CDS
CAAATTATTGAATGGGCCAT+TGG 0.420197 2:-14919545 None:intergenic
CTCACCGAAGCAACGGTGTC+CGG 0.425929 2:-14919803 None:intergenic
CCCGGATTTCTTTCACGTCT+CGG 0.430118 2:-14919726 None:intergenic
GACGCCGGACACCGTTGCTT+CGG 0.442460 2:+14919799 MsG0280007398.01.T01:CDS
ACCGAGACGTGAAAGAAATC+CGG 0.448843 2:+14919725 MsG0280007398.01.T01:CDS
CTTCGGTGAGAATTACGTTC+AGG 0.449926 2:+14919816 MsG0280007398.01.T01:CDS
GATTGATGCAAATTATTGAA+TGG 0.458496 2:-14919553 None:intergenic
TTCTTTCGGTGGATACTCTC+TGG 0.460364 2:-14922045 None:intergenic
CCTATAAATGCGCGATGACA+TGG 0.462715 2:+14919595 MsG0280007398.01.T01:five_prime_UTR
AAATGCCACTCAATATCTTC+GGG 0.464259 2:-14919865 None:intergenic
CTCTCTACATAAGCAAGGTT+GGG 0.465215 2:-14920458 None:intergenic
CACGTCTCGGTTCGATCTCT+CGG 0.472279 2:-14919713 None:intergenic
ATTGATGCAAATTATTGAAT+GGG 0.473739 2:-14919552 None:intergenic
AGCACAATGTGAGCTGTCAA+TGG 0.479667 2:+14921864 MsG0280007398.01.T01:CDS
CGCAGCGGCGTCGCTAAAGG+CGG 0.492772 2:+14919666 MsG0280007398.01.T01:CDS
ACTCTCTACATAAGCAAGGT+TGG 0.501292 2:-14920459 None:intergenic
CCGAGACGTGAAAGAAATCC+GGG 0.508092 2:+14919726 MsG0280007398.01.T01:CDS
GAAAGAAATCCGGGTGGTGG+CGG 0.512147 2:+14919735 MsG0280007398.01.T01:CDS
CGAAGTCAGTTTCTATGCTC+CGG 0.519414 2:+14919767 MsG0280007398.01.T01:CDS
GGAAGTACAACTGTTAGGAT+TGG 0.523188 2:+14922005 MsG0280007398.01.T01:CDS
TCTTACTCGCCGCCACCACC+CGG 0.527906 2:-14919744 None:intergenic
AGTGAAGTTTGTGAGGCACT+TGG 0.531378 2:+14921832 MsG0280007398.01.T01:CDS
GTCAGTTTCTATGCTCCGGC+AGG 0.535064 2:+14919771 MsG0280007398.01.T01:CDS
GCACAATGTGAGCTGTCAAT+GGG 0.536734 2:+14921865 MsG0280007398.01.T01:CDS
GTCTTATTTAGGTGATATTG+TGG 0.542475 2:+14922093 MsG0280007398.01.T01:three_prime_UTR
CGTGAAAGAAATCCGGGTGG+TGG 0.546989 2:+14919732 MsG0280007398.01.T01:CDS
TTTGCCATAATGACTATACA+AGG 0.551949 2:-14922333 None:intergenic
CGTAATTCTCACCGAAGCAA+CGG 0.556077 2:-14919810 None:intergenic
AGCTACTTCTCTTCTTTCGG+TGG 0.562536 2:-14922056 None:intergenic
TCGATCTCTCGGCGGCGTGG+TGG 0.566044 2:-14919702 None:intergenic
TAAAATGACATACCAAGAAG+AGG 0.575637 2:-14919919 None:intergenic
ACTATGATGATAATCTTGAA+AGG 0.589715 2:+14922304 MsG0280007398.01.T01:three_prime_UTR
CTCTCTGGCTCCAAATATTG+CGG 0.594731 2:-14922030 None:intergenic
AATTATTGAATGGGCCATTG+GGG 0.596903 2:-14919543 None:intergenic
AGAGAGTGTCGACGATGAGA+AGG 0.599683 2:+14920475 MsG0280007398.01.T01:CDS
TCAATATCTTCGGGAAGCTG+AGG 0.600112 2:-14919856 None:intergenic
CTCCGGCAGGTGTATGACGC+CGG 0.616898 2:+14919784 MsG0280007398.01.T01:CDS
GTCCGGCGTCATACACCTGC+CGG 0.625260 2:-14919786 None:intergenic
ATCATTACAGGGCGGCGCAG+CGG 0.626585 2:+14919651 MsG0280007398.01.T01:CDS
ATGTAGAAGTGAAGTTTGTG+AGG 0.640698 2:+14921825 MsG0280007398.01.T01:CDS
CGACACTCTCTACATAAGCA+AGG 0.641240 2:-14920463 None:intergenic
GGTTCGATCTCTCGGCGGCG+TGG 0.642322 2:-14919705 None:intergenic
AAAATGACATCATCATTACA+GGG 0.643779 2:+14919640 MsG0280007398.01.T01:exon
ATTATTGAATGGGCCATTGG+GGG 0.659328 2:-14919542 None:intergenic
AGCTTCCCGAAGATATTGAG+TGG 0.664023 2:+14919860 MsG0280007398.01.T01:CDS
GTCTCGGTTCGATCTCTCGG+CGG 0.745714 2:-14919710 None:intergenic
ATGACATCATCATTACAGGG+CGG 0.771534 2:+14919643 MsG0280007398.01.T01:CDS
AGACGTGAAAGAAATCCGGG+TGG 0.791466 2:+14919729 MsG0280007398.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATGTTTAATTGTATGTT+TGG + Chr2:14920294-14920313 MsG0280007398.01.T01:intron 15.0%
!! AAAATTTCTATAAAAGAATC+GGG - Chr2:14921352-14921371 None:intergenic 15.0%
!! CAAAATTTCTATAAAAGAAT+CGG - Chr2:14921353-14921372 None:intergenic 15.0%
!!! ATTATTTCATAGAACATTTT+GGG - Chr2:14920966-14920985 None:intergenic 15.0%
!!! ATTTTTGTTTCTTAATACTT+TGG + Chr2:14920503-14920522 MsG0280007398.01.T01:intron 15.0%
!!! TAGTTTTCTTAAAAATTACA+CGG + Chr2:14921921-14921940 MsG0280007398.01.T01:intron 15.0%
!!! TTGTAACAATATATTTTACA+AGG - Chr2:14921618-14921637 None:intergenic 15.0%
!!! TTTTTTGTATTTATGGATAT+AGG + Chr2:14920361-14920380 MsG0280007398.01.T01:intron 15.0%
!! AAATTTCTATAAAAGAATCG+GGG - Chr2:14921351-14921370 None:intergenic 20.0%
!! ATCCATAAATACAAAAAAAG+TGG - Chr2:14920359-14920378 None:intergenic 20.0%
!! ATTGATGCAAATTATTGAAT+GGG - Chr2:14919555-14919574 None:intergenic 20.0%
!! TAGTAAACTGATATGAAAAT+AGG + Chr2:14921301-14921320 MsG0280007398.01.T01:intron 20.0%
!! TTTACATAAAGTTTACATCT+GGG + Chr2:14920602-14920621 MsG0280007398.01.T01:intron 20.0%
!!! AAGCCATGTTAAAATATTTT+GGG - Chr2:14921280-14921299 None:intergenic 20.0%
!!! ATAAAGGTACATTTTTTAAC+TGG + Chr2:14920212-14920231 MsG0280007398.01.T01:intron 20.0%
!!! CATTATTTCATAGAACATTT+TGG - Chr2:14920967-14920986 None:intergenic 20.0%
!!! TAACCCAAAATATTTTAACA+TGG + Chr2:14921274-14921293 MsG0280007398.01.T01:intron 20.0%
!!! TTCCACTTTTTTTGTATTTA+TGG + Chr2:14920354-14920373 MsG0280007398.01.T01:intron 20.0%
!!! TTCTATGAAATAATGCATTT+TGG + Chr2:14920972-14920991 MsG0280007398.01.T01:intron 20.0%
!!! TTTTACATAAAGTTTACATC+TGG + Chr2:14920601-14920620 MsG0280007398.01.T01:intron 20.0%
! AAAAATGACATCATCATTAC+AGG + Chr2:14919639-14919658 MsG0280007398.01.T01:exon 25.0%
! AAAATGACATCATCATTACA+GGG + Chr2:14919640-14919659 MsG0280007398.01.T01:exon 25.0%
! AAAGTATACTATCTTAGTTC+TGG - Chr2:14922282-14922301 None:intergenic 25.0%
! AACACTAATTAGACTCATAA+AGG + Chr2:14920196-14920215 MsG0280007398.01.T01:intron 25.0%
! AAGAGAAATCACAAAATGAT+AGG - Chr2:14920683-14920702 None:intergenic 25.0%
! AAGTAGTCTATATATAGTAC+AGG + Chr2:14920784-14920803 MsG0280007398.01.T01:intron 25.0%
! AATTAGTGTTTGAACATGTT+TGG - Chr2:14920186-14920205 None:intergenic 25.0%
! ACTATGATGATAATCTTGAA+AGG + Chr2:14922304-14922323 MsG0280007398.01.T01:three_prime_UTR 25.0%
! ACTTCAACAAAAACTTTCAA+TGG - Chr2:14921150-14921169 None:intergenic 25.0%
! ATATTTCTTGCAGCTAAATT+TGG + Chr2:14921568-14921587 MsG0280007398.01.T01:intron 25.0%
! CAGTTCATCACAATAAATAT+TGG - Chr2:14921423-14921442 None:intergenic 25.0%
! GATTGATGCAAATTATTGAA+TGG - Chr2:14919556-14919575 None:intergenic 25.0%
! GCACAAAATAAAATTTAGTC+TGG - Chr2:14921787-14921806 None:intergenic 25.0%
! TGTTTCTTAATACTTTGGTA+GGG + Chr2:14920508-14920527 MsG0280007398.01.T01:intron 25.0%
! TTGACAATAACTTTACAGAA+GGG + Chr2:14920814-14920833 MsG0280007398.01.T01:intron 25.0%
! TTTGACAATAACTTTACAGA+AGG + Chr2:14920813-14920832 MsG0280007398.01.T01:intron 25.0%
!! ATATTGAGTGGCATTTTATT+GGG + Chr2:14919872-14919891 MsG0280007398.01.T01:CDS 25.0%
!! ATATTTTCCAAGTGTGTTTA+AGG + Chr2:14920545-14920564 MsG0280007398.01.T01:intron 25.0%
!! ATTTGAAGTGATTTGAGTTT+AGG + Chr2:14919981-14920000 MsG0280007398.01.T01:intron 25.0%
!! CTAATTTTGTAGATTGAGAT+GGG + Chr2:14921984-14922003 MsG0280007398.01.T01:intron 25.0%
!! GAAGCCATGTTAAAATATTT+TGG - Chr2:14921281-14921300 None:intergenic 25.0%
!! TATCATTTTGTGATTTCTCT+TGG + Chr2:14920682-14920701 MsG0280007398.01.T01:intron 25.0%
!! TCTAATTTTGTAGATTGAGA+TGG + Chr2:14921983-14922002 MsG0280007398.01.T01:intron 25.0%
!! TTATTTGATATTTCTGTAGC+TGG + Chr2:14920431-14920450 MsG0280007398.01.T01:intron 25.0%
!! TTGTTTCTTAATACTTTGGT+AGG + Chr2:14920507-14920526 MsG0280007398.01.T01:intron 25.0%
!!! AATGTTTTTGCAAGTGTTTT+CGG + Chr2:14921512-14921531 MsG0280007398.01.T01:intron 25.0%
!!! CAGCCAAAATAATTTGTTTA+GGG - Chr2:14922153-14922172 None:intergenic 25.0%
!!! TCGTTATATTTGGTTTGTTA+TGG + Chr2:14920385-14920404 MsG0280007398.01.T01:intron 25.0%
!!! TTATATTTGGTTTGTTATGG+AGG + Chr2:14920388-14920407 MsG0280007398.01.T01:intron 25.0%
!!! TTCATTTTGCAGTCTTATTT+AGG + Chr2:14922082-14922101 MsG0280007398.01.T01:three_prime_UTR 25.0%
AAAATGCCACTCAATATCTT+CGG - Chr2:14919869-14919888 None:intergenic 30.0%
AAATTATTGAATGGGCCATT+GGG - Chr2:14919547-14919566 None:intergenic 30.0%
AATAAAGTTAAGCCTCTTCT+TGG + Chr2:14919907-14919926 MsG0280007398.01.T01:CDS 30.0%
ACAAACTTCACTTCTACATT+TGG - Chr2:14921824-14921843 None:intergenic 30.0%
ACAACCTTGTATAGTCATTA+TGG + Chr2:14922329-14922348 MsG0280007398.01.T01:three_prime_UTR 30.0%
AGTGATAGTAGATTCTGAAT+TGG - Chr2:14921220-14921239 None:intergenic 30.0%
ATCACTTGATAAAGATGACT+TGG + Chr2:14921234-14921253 MsG0280007398.01.T01:intron 30.0%
GAACATGTTTGGTATCAAAA+TGG - Chr2:14920175-14920194 None:intergenic 30.0%
GAGTCAATTTCTTTCCTTAT+TGG - Chr2:14919523-14919542 None:intergenic 30.0%
GGATATAGGTTCGTTATATT+TGG + Chr2:14920375-14920394 MsG0280007398.01.T01:intron 30.0%
TAAAATGACATACCAAGAAG+AGG - Chr2:14919922-14919941 None:intergenic 30.0%
TTTGCCATAATGACTATACA+AGG - Chr2:14922336-14922355 None:intergenic 30.0%
! ACTATTTCTTCTTCTTATGG+TGG - Chr2:14921328-14921347 None:intergenic 30.0%
! ATCTACCCCAGAAAATTTTA+AGG + Chr2:14921693-14921712 MsG0280007398.01.T01:intron 30.0%
! GATATTGAGTGGCATTTTAT+TGG + Chr2:14919871-14919890 MsG0280007398.01.T01:CDS 30.0%
! GCACCCTAAACAAATTATTT+TGG + Chr2:14922147-14922166 MsG0280007398.01.T01:three_prime_UTR 30.0%
! TCGTCACCTTAAAATTTTCT+GGG - Chr2:14921702-14921721 None:intergenic 30.0%
!! AGTTCTGGTTCAGTATAAAA+AGG - Chr2:14922267-14922286 None:intergenic 30.0%
!! CCAGCCAAAATAATTTGTTT+AGG - Chr2:14922154-14922173 None:intergenic 30.0%
!! GTCTTATTTAGGTGATATTG+TGG + Chr2:14922093-14922112 MsG0280007398.01.T01:three_prime_UTR 30.0%
!!! CCTAAACAAATTATTTTGGC+TGG + Chr2:14922151-14922170 MsG0280007398.01.T01:three_prime_UTR 30.0%
!!! TAAAGATGACTTGGTTTTGT+TGG + Chr2:14921243-14921262 MsG0280007398.01.T01:intron 30.0%
AAATGCCACTCAATATCTTC+GGG - Chr2:14919868-14919887 None:intergenic 35.0%
AATTATTGAATGGGCCATTG+GGG - Chr2:14919546-14919565 None:intergenic 35.0%
AATTGGCTAGCAAATCTATC+AGG - Chr2:14921203-14921222 None:intergenic 35.0%
ACAATGCTTCACCTTGATTT+CGG + Chr2:14920144-14920163 MsG0280007398.01.T01:intron 35.0%
ACCTCGTTCTTTGGTATATT+CGG + Chr2:14921734-14921753 MsG0280007398.01.T01:intron 35.0%
ATAAAGTTTACATCTGGGAG+TGG + Chr2:14920607-14920626 MsG0280007398.01.T01:intron 35.0%
ATGTAGAAGTGAAGTTTGTG+AGG + Chr2:14921825-14921844 MsG0280007398.01.T01:CDS 35.0%
ATTCAAGTCAGTAGTTAGTG+TGG - Chr2:14920853-14920872 None:intergenic 35.0%
CAAATTATTGAATGGGCCAT+TGG - Chr2:14919548-14919567 None:intergenic 35.0%
CGGTATTCATTATCTAGTCT+TGG + Chr2:14921754-14921773 MsG0280007398.01.T01:intron 35.0%
TAGATGATAAAGTGCGTGTT+TGG + Chr2:14920097-14920116 MsG0280007398.01.T01:intron 35.0%
TCATTAGGCCACAAAATTCA+AGG - Chr2:14921651-14921670 None:intergenic 35.0%
TGCTTGATTTAAGAGTTTGC+AGG + Chr2:14921441-14921460 MsG0280007398.01.T01:intron 35.0%
TTTGTTGAAGTGAACACAAG+CGG + Chr2:14921159-14921178 MsG0280007398.01.T01:intron 35.0%
! CGTCACCTTAAAATTTTCTG+GGG - Chr2:14921701-14921720 None:intergenic 35.0%
! GGGACTATTTCTTCTTCTTA+TGG - Chr2:14921331-14921350 None:intergenic 35.0%
! GTCGTCACCTTAAAATTTTC+TGG - Chr2:14921703-14921722 None:intergenic 35.0%
! TTTTGTGGCCTAATGACAAT+TGG + Chr2:14921655-14921674 MsG0280007398.01.T01:intron 35.0%
!! AAATGGTTTTGCCGAAATCA+AGG - Chr2:14920158-14920177 None:intergenic 35.0%
!! TGAGTTTAGGTGTTTTAAGC+TGG + Chr2:14919994-14920013 MsG0280007398.01.T01:intron 35.0%
!! TGTTTGGCTTGTATATGCAA+TGG + Chr2:14920310-14920329 MsG0280007398.01.T01:intron 35.0%
!!! AAGGTGAAGCATTGTGATTT+TGG - Chr2:14920139-14920158 None:intergenic 35.0%
ACCGAATATACCAAAGAACG+AGG - Chr2:14921738-14921757 None:intergenic 40.0%
ACTCTCTACATAAGCAAGGT+TGG - Chr2:14920462-14920481 None:intergenic 40.0%
AGCAGCTACTTCTCTTCTTT+CGG - Chr2:14922062-14922081 None:intergenic 40.0%
AGGATTGGAACCGCAATATT+TGG + Chr2:14922020-14922039 MsG0280007398.01.T01:CDS 40.0%
AGGCCACAAAATTCAAGGTT+TGG - Chr2:14921646-14921665 None:intergenic 40.0%
AGTGGAATATACACTGGACA+CGG + Chr2:14920625-14920644 MsG0280007398.01.T01:intron 40.0%
ATACTTTGGTAGGGAAGAGA+AGG + Chr2:14920517-14920536 MsG0280007398.01.T01:intron 40.0%
ATGACATCATCATTACAGGG+CGG + Chr2:14919643-14919662 MsG0280007398.01.T01:CDS 40.0%
ATTATTGAATGGGCCATTGG+GGG - Chr2:14919545-14919564 None:intergenic 40.0%
CTCTCTACATAAGCAAGGTT+GGG - Chr2:14920461-14920480 None:intergenic 40.0%
CTTGAAGCCTTAAACACACT+TGG - Chr2:14920555-14920574 None:intergenic 40.0%
GGCCACAAAATTCAAGGTTT+GGG - Chr2:14921645-14921664 None:intergenic 40.0%
! AAAGAAATTGACTCCCCCAA+TGG + Chr2:14919529-14919548 MsG0280007398.01.T01:five_prime_UTR 40.0%
! AGATGGGAAGTACAACTGTT+AGG + Chr2:14922000-14922019 MsG0280007398.01.T01:CDS 40.0%
! CAATGGTTTCCTGCCAATTT+TGG - Chr2:14921133-14921152 None:intergenic 40.0%
! GGAAGTACAACTGTTAGGAT+TGG + Chr2:14922005-14922024 MsG0280007398.01.T01:CDS 40.0%
! TGCCCAAACCTTGAATTTTG+TGG + Chr2:14921640-14921659 MsG0280007398.01.T01:intron 40.0%
!! ATCACTGATTCCAGCATCAT+AGG + Chr2:14921381-14921400 MsG0280007398.01.T01:intron 40.0%
!! TGCATTTTGACCTCGTTCTT+TGG + Chr2:14921725-14921744 MsG0280007398.01.T01:intron 40.0%
!!! TTTCCTGCCAATTTTGGCTA+TGG - Chr2:14921127-14921146 None:intergenic 40.0%
ACACAAGCGGAGAAACATGT+AGG + Chr2:14921172-14921191 MsG0280007398.01.T01:intron 45.0%
ACCGAGACGTGAAAGAAATC+CGG + Chr2:14919725-14919744 MsG0280007398.01.T01:CDS 45.0%
AGCACAATGTGAGCTGTCAA+TGG + Chr2:14921864-14921883 MsG0280007398.01.T01:CDS 45.0%
AGCTACTTCTCTTCTTTCGG+TGG - Chr2:14922059-14922078 None:intergenic 45.0%
AGCTTCCCGAAGATATTGAG+TGG + Chr2:14919860-14919879 MsG0280007398.01.T01:CDS 45.0%
ATTCACGCTACCTATGATGC+TGG - Chr2:14921394-14921413 None:intergenic 45.0%
CAGACTTTGAGCAAGCTGTA+AGG + Chr2:14921896-14921915 MsG0280007398.01.T01:intron 45.0%
CCAGCATGCCAATTGTCATT+AGG - Chr2:14921666-14921685 None:intergenic 45.0%
CCATGTCATCGCGCATTTAT+AGG - Chr2:14919598-14919617 None:intergenic 45.0%
CCTAATGACAATTGGCATGC+TGG + Chr2:14921663-14921682 MsG0280007398.01.T01:intron 45.0%
CCTATAAATGCGCGATGACA+TGG + Chr2:14919595-14919614 MsG0280007398.01.T01:five_prime_UTR 45.0%
CGAAGTCAGTTTCTATGCTC+CGG + Chr2:14919767-14919786 MsG0280007398.01.T01:CDS 45.0%
CGACACTCTCTACATAAGCA+AGG - Chr2:14920466-14920485 None:intergenic 45.0%
CGTAATTCTCACCGAAGCAA+CGG - Chr2:14919813-14919832 None:intergenic 45.0%
CTTCGGTGAGAATTACGTTC+AGG + Chr2:14919816-14919835 MsG0280007398.01.T01:CDS 45.0%
GCACAATGTGAGCTGTCAAT+GGG + Chr2:14921865-14921884 MsG0280007398.01.T01:CDS 45.0%
GTTAGTGTGGCACACATCTA+AGG - Chr2:14920840-14920859 None:intergenic 45.0%
TCAATATCTTCGGGAAGCTG+AGG - Chr2:14919859-14919878 None:intergenic 45.0%
TCTGGGAGTGGAATATACAC+TGG + Chr2:14920619-14920638 MsG0280007398.01.T01:intron 45.0%
TTCTTTCGGTGGATACTCTC+TGG - Chr2:14922048-14922067 None:intergenic 45.0%
! AGTGAAGTTTGTGAGGCACT+TGG + Chr2:14921832-14921851 MsG0280007398.01.T01:CDS 45.0%
! CTCTCTGGCTCCAAATATTG+CGG - Chr2:14922033-14922052 None:intergenic 45.0%
ACAAGGTCTAGACACTGTGC+TGG - Chr2:14921601-14921620 None:intergenic 50.0%
AGACGTGAAAGAAATCCGGG+TGG + Chr2:14919729-14919748 MsG0280007398.01.T01:CDS 50.0%
CCCGGATTTCTTTCACGTCT+CGG - Chr2:14919729-14919748 None:intergenic 50.0%
CCGAGACGTGAAAGAAATCC+GGG + Chr2:14919726-14919745 MsG0280007398.01.T01:CDS 50.0%
GATCGCGCCATAGCCAAAAT+TGG + Chr2:14921117-14921136 MsG0280007398.01.T01:intron 50.0%
!! AGAGAGTGTCGACGATGAGA+AGG + Chr2:14920475-14920494 MsG0280007398.01.T01:CDS 50.0%
CGTGAAAGAAATCCGGGTGG+TGG + Chr2:14919732-14919751 MsG0280007398.01.T01:CDS 55.0%
GCGCCATAGCCAAAATTGGC+AGG + Chr2:14921121-14921140 MsG0280007398.01.T01:intron 55.0%
GTCAGTTTCTATGCTCCGGC+AGG + Chr2:14919771-14919790 MsG0280007398.01.T01:CDS 55.0%
TGGCTATGGCGCGATCAAGA+AGG - Chr2:14921113-14921132 None:intergenic 55.0%
! CACGTCTCGGTTCGATCTCT+CGG - Chr2:14919716-14919735 None:intergenic 55.0%
! GAAAGAAATCCGGGTGGTGG+CGG + Chr2:14919735-14919754 MsG0280007398.01.T01:CDS 55.0%
ATCATTACAGGGCGGCGCAG+CGG + Chr2:14919651-14919670 MsG0280007398.01.T01:CDS 60.0%
CTCACCGAAGCAACGGTGTC+CGG - Chr2:14919806-14919825 None:intergenic 60.0%
! GTCTCGGTTCGATCTCTCGG+CGG - Chr2:14919713-14919732 None:intergenic 60.0%
CTCCGGCAGGTGTATGACGC+CGG + Chr2:14919784-14919803 MsG0280007398.01.T01:CDS 65.0%
GACGCCGGACACCGTTGCTT+CGG + Chr2:14919799-14919818 MsG0280007398.01.T01:CDS 65.0%
GTCCGGCGTCATACACCTGC+CGG - Chr2:14919789-14919808 None:intergenic 65.0%
TCTTACTCGCCGCCACCACC+CGG - Chr2:14919747-14919766 None:intergenic 65.0%
CGCAGCGGCGTCGCTAAAGG+CGG + Chr2:14919666-14919685 MsG0280007398.01.T01:CDS 70.0%
GGTTCGATCTCTCGGCGGCG+TGG - Chr2:14919708-14919727 None:intergenic 70.0%
TCGATCTCTCGGCGGCGTGG+TGG - Chr2:14919705-14919724 None:intergenic 70.0%
CGGCGCAGCGGCGTCGCTAA+AGG + Chr2:14919663-14919682 MsG0280007398.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr2 gene 14919516 14922372 14919516 ID=MsG0280007398.01;Name=MsG0280007398.01
Chr2 mRNA 14919516 14922372 14919516 ID=MsG0280007398.01.T01;Parent=MsG0280007398.01;Name=MsG0280007398.01.T01;_AED=0.38;_eAED=0.38;_QI=127|0.66|1|1|1|1|4|296|170
Chr2 exon 14919516 14919928 14919516 ID=MsG0280007398.01.T01:exon:882;Parent=MsG0280007398.01.T01
Chr2 exon 14920450 14920496 14920450 ID=MsG0280007398.01.T01:exon:883;Parent=MsG0280007398.01.T01
Chr2 exon 14921814 14921912 14921814 ID=MsG0280007398.01.T01:exon:884;Parent=MsG0280007398.01.T01
Chr2 exon 14921996 14922372 14921996 ID=MsG0280007398.01.T01:exon:885;Parent=MsG0280007398.01.T01
Chr2 five_prime_UTR 14919516 14919642 14919516 ID=MsG0280007398.01.T01:five_prime_utr;Parent=MsG0280007398.01.T01
Chr2 CDS 14919643 14919928 14919643 ID=MsG0280007398.01.T01:cds;Parent=MsG0280007398.01.T01
Chr2 CDS 14920450 14920496 14920450 ID=MsG0280007398.01.T01:cds;Parent=MsG0280007398.01.T01
Chr2 CDS 14921814 14921912 14921814 ID=MsG0280007398.01.T01:cds;Parent=MsG0280007398.01.T01
Chr2 CDS 14921996 14922076 14921996 ID=MsG0280007398.01.T01:cds;Parent=MsG0280007398.01.T01
Chr2 three_prime_UTR 14922077 14922372 14922077 ID=MsG0280007398.01.T01:three_prime_utr;Parent=MsG0280007398.01.T01
Gene Sequence

>MsG0280007398.01.T01

ATGACATCATCATTACAGGGCGGCGCAGCGGCGTCGCTAAAGGCGGTGCTCGATCGTGTCCACCACGCCGCCGAGAGATCGAACCGAGACGTGAAAGAAATCCGGGTGGTGGCGGCGAGTAAGACGAAGTCAGTTTCTATGCTCCGGCAGGTGTATGACGCCGGACACCGTTGCTTCGGTGAGAATTACGTTCAGGAAATAATTGAGAAAGCTCCTCAGCTTCCCGAAGATATTGAGTGGCATTTTATTGGGAATTTGCAGAGTAATAAAGTTAAGCCTCTTCTTGCTGGTGTTCCCAACCTTGCTTATGTAGAGAGTGTCGACGATGAGAAGACATTATCCAAATGTAGAAGTGAAGTTTGTGAGGCACTTGGAATATCAGAAGCACAATGTGAGCTGTCAATGGGAATGACTGCAGACTTTGAGCAAGCTATTGAGATGGGAAGTACAACTGTTAGGATTGGAACCGCAATATTTGGAGCCAGAGAGTATCCACCGAAAGAAGAGAAGTAG
Protein sequence

>MsG0280007398.01.T01

MTSSLQGGAAASLKAVLDRVHHAAERSNRDVKEIRVVAASKTKSVSMLRQVYDAGHRCFGENYVQEIIEKAPQLPEDIEWHFIGNLQSNKVKPLLAGVPNLAYVESVDDEKTLSKCRSEVCEALGISEAQCELSMGMTADFEQAIEMGSTTVRIGTAIFGAREYPPKEEK*