AlfalfaGEDB | MsG0280007538.01

M. sativa cultivar ZhongmuNo.1 / MsG0280007538.01

KEGG: K13216
GO: GO:0005515
PFAM: PF00498

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007538.01.T01	XP_003594333.1	96.759	432	10	2	1	428	1	432	0	842

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007538.01.T01	Q9FIK2	58.508	429	116	8	1	428	1	368	6.82E-161	461

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007538.01.T01	G7IQ42	96.759	432	10	2	1	428	1	432	0.0	842

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
MsG0280007538.01	MsG0780041001.01	PPI
MsG0280007538.01	MsG0180003565.01	PPI
MsG0280007538.01	MsG0280006473.01	PPI
MsG0280007538.01	MsG0580024403.01	PPI
MsG0280007538.01	MsG0780041667.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007538.01.T01	MTR_2g027390	96.759	432	10	2	1	428	1	432	0.0	842
MsG0280007538.01.T01	MTR_7g017500	39.474	114	66	3	93	205	149	260	1.63e-22	100

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007538.01.T01	AT5G47790	58.508	429	116	8	1	428	1	368	6.95e-162	461
MsG0280007538.01.T01	AT5G38840	39.640	111	64	3	96	205	93	201	3.86e-19	90.5

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Find 145 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTACTGTAATTCCAAAG+GGG	0.709535	2:+16873191	MsG0280007538.01.T01:CDS
AAACTCAACAGGTGAATCCT+TGG	0.474394	2:-16872744	None:intergenic
AAAGGGCAACTTACCATTTA+AGG	0.131774	2:-16873683	None:intergenic
AACATTAATTATGGACGCAA+TGG	0.516800	2:-16873617	None:intergenic
AACCTATGCAGATTGCATTT+TGG	0.226234	2:+16873499	MsG0280007538.01.T01:three_prime_UTR
AAGAGCATGTTCTTAAGATT+TGG	0.324829	2:+16871727	MsG0280007538.01.T01:five_prime_UTR
AAGCGTAGTAGAGAGAAAGA+GGG	0.551110	2:-16871297	None:intergenic
AATACGCTGCTGAATCGTTA+TGG	0.447922	2:+16872920	MsG0280007538.01.T01:CDS
AATCAACAGGCAACTCAGAT+TGG	0.499106	2:+16872067	MsG0280007538.01.T01:CDS
ACAAACTACTGTAATTCCAA+AGG	0.585279	2:+16873189	MsG0280007538.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTACTGTAATTCCAAAG+GGG	+	Chr2:16873191-16873210	MsG0280007538.01.T01:CDS	30.0%
AACATTAATTATGGACGCAA+TGG	-	Chr2:16873620-16873639	None:intergenic	30.0%
ACAAACTACTGTAATTCCAA+AGG	+	Chr2:16873189-16873208	MsG0280007538.01.T01:CDS	30.0%
CAAACTACTGTAATTCCAAA+GGG	+	Chr2:16873190-16873209	MsG0280007538.01.T01:CDS	30.0%
CAGATAATGATTCTCCATAT+AGG	-	Chr2:16873330-16873349	None:intergenic	30.0%
CTACCCTAGAATTAAAATTG+GGG	-	Chr2:16871516-16871535	None:intergenic	30.0%
GAATCATTATCTGTCAAAGT+TGG	+	Chr2:16873337-16873356	MsG0280007538.01.T01:CDS	30.0%
GAATTACCATTAACAGAGAA+CGG	-	Chr2:16871887-16871906	None:intergenic	30.0%
TACCCTAGAATTAAAATTGG+GGG	-	Chr2:16871515-16871534	None:intergenic	30.0%
TTGAATGCTTTCGTTTGATA+AGG	-	Chr2:16872493-16872512	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	16871275	16873713	16871275	ID=MsG0280007538.01;Name=MsG0280007538.01
Chr2	mRNA	16871275	16873713	16871275	ID=MsG0280007538.01.T01;Parent=MsG0280007538.01;Name=MsG0280007538.01.T01;_AED=0.41;_eAED=0.41;_QI=200\|1\|1\|1\|0.5\|0.33\|3\|221\|428
Chr2	exon	16871275	16871352	16871275	ID=MsG0280007538.01.T01:exon:3600;Parent=MsG0280007538.01.T01
Chr2	exon	16871708	16872308	16871708	ID=MsG0280007538.01.T01:exon:3601;Parent=MsG0280007538.01.T01
Chr2	exon	16872685	16873713	16872685	ID=MsG0280007538.01.T01:exon:3602;Parent=MsG0280007538.01.T01
Chr2	five_prime_UTR	16871275	16871352	16871275	ID=MsG0280007538.01.T01:five_prime_utr;Parent=MsG0280007538.01.T01
Chr2	five_prime_UTR	16871708	16871829	16871708	ID=MsG0280007538.01.T01:five_prime_utr;Parent=MsG0280007538.01.T01
Chr2	CDS	16871830	16872308	16871830	ID=MsG0280007538.01.T01:cds;Parent=MsG0280007538.01.T01
Chr2	CDS	16872685	16873492	16872685	ID=MsG0280007538.01.T01:cds;Parent=MsG0280007538.01.T01
Chr2	three_prime_UTR	16873493	16873713	16873493	ID=MsG0280007538.01.T01:three_prime_utr;Parent=MsG0280007538.01.T01

Gene Sequence

>MsG0280007538.01.T01

ATGTATGGAAGAACATCTGGTCTTGATAGGTTTAAGAAAGCCGAGAGTTTGGAACCGTTCTCTGTTAATGGTAATTCGTCTTCGAGAAATGTTGCTCAGTCTTCTAGTAAGGTAGTTGGTCATTCTTCGGCTTGGCTGCCTCCACAGTCGAAGAATTCTGTACATCAATCACAGAATCAACATCAACATGGTTCTCAGAAAGGTGTGGGAGTGGAGGCGGCTCCGTTGTTGGGGCAGAATCAACAGGCAACTCAGATTGGTGGAGGGCAGTCGATGTGGCAGCCACCAGATTGGGCGATTGAGCCGCGACCGGGTGTTTTTTACTTGGAAGTTATGAAGGATGGTCAGGTGCTAGATAGGATTAATTTGGATAGACGAAGAAATATTTTTGGGAGGCAAATCCAGACTTGTGATTTTGTGCTTGATCATCAATCTGTCTCTCGCCAACATGCTGCGGTGGTTCCTCACAAGAACGGAAGTGTATATGTAATTGATTTGGGATCTGCACATGGTACCTTTGTTGCAAATGAGCGTTTGACCAAGGATTCACCTGTTGAGTTTGAAGTGGGACAATCATTGCGGTTTGCTGCATCCACGAGATTATACATATTAAGAAAGAATGATGCAGCTCTTTTCCCTCGTCCTTCACCACCCACGGGGATCAATTTCCCACCACCTCCTGACCCATCGGATGAAGAGGCTGTTGTTACTTATAATACGCTGCTGAATCGTTATGGCATCAACAAGTCTGATCTCGTGTCCAAATCCACTGAGCTTGGTAGTGCAACAAATGGCAAAAACAAGGATTGCCAATCAGAAAGAGCTGCTAAGAGAATTAAGAAGATGAGAGTTTCATTCAGGGATCAGGTTGGGGGAGAGTTAGTTGAGGTTGTTGGAATTTCAGATGGTGTAGATGTAGAAACAGAACCTGGTCCAGTTGGTGTTAAGGAAGGAAGTCTAGTTGGTAAATATGAATCTCTTGTACAAACTACTGTAATTCCAAAGGGGAAAGGGCAGTCCTCTGCTAGGGAGGTAGATTCATCCCAAAAAGGTGTGACTGATAAACTACAAGAAGTCCTAAACAAGATCAAAAACCCCGCTAAAACTGGGATTTACGATGACCTATATGGAGAATCATTATCTGTCAAAGTTGGATCAGCCTGGGCATACTCACCTGTCAGTAGTGGTGAACGAGCGCCAGCAGCTAAGGAGAATGGAGAAAGTGGAAAATCAGACAGTAATCCAAGCATTGCTGATTACGAGGATGATGATGATTTGTTTGGGTGA

Protein sequence

>MsG0280007538.01.T01

MYGRTSGLDRFKKAESLEPFSVNGNSSSRNVAQSSSKVVGHSSAWLPPQSKNSVHQSQNQHQHGSQKGVGVEAAPLLGQNQQATQIGGGQSMWQPPDWAIEPRPGVFYLEVMKDGQVLDRINLDRRRNIFGRQIQTCDFVLDHQSVSRQHAAVVPHKNGSVYVIDLGSAHGTFVANERLTKDSPVEFEVGQSLRFAASTRLYILRKNDAALFPRPSPPTGINFPPPPDPSDEEAVVTYNTLLNRYGINKSDLVSKSTELGSATNGKNKDCQSERAAKRIKKMRVSFRDQVGGELVEVVGISDGVDVETEPGPVGVKEGSLVGKYESLVQTTVIPKGKGQSSAREVDSSQKGVTDKLQEVLNKIKNPAKTGIYDDLYGESLSVKVGSAWAYSPVSSGERAPAAKENGESGKSDSNPSIADYEDDDDLFG*