Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007539.01.T01 | XP_003594335.1 | 94.692 | 584 | 20 | 1 | 1 | 584 | 1 | 573 | 0 | 1140 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007539.01.T01 | Q9FIK1 | 55.536 | 569 | 217 | 6 | 1 | 552 | 1 | 550 | 0 | 637 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007539.01.T01 | G7IQ44 | 94.692 | 584 | 20 | 1 | 1 | 584 | 1 | 573 | 0.0 | 1140 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0580025678.01 | MsG0280007539.01 | PPI |
| MsG0580025678.01 | MsG0280007539.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007539.01.T01 | MTR_2g027410 | 94.692 | 584 | 20 | 1 | 1 | 584 | 1 | 573 | 0.0 | 1140 |
| MsG0280007539.01.T01 | MTR_2g027410 | 93.945 | 512 | 20 | 1 | 73 | 584 | 1 | 501 | 0.0 | 972 |
| MsG0280007539.01.T01 | MTR_4g134210 | 67.987 | 606 | 164 | 7 | 1 | 582 | 1 | 600 | 0.0 | 835 |
| MsG0280007539.01.T01 | MTR_5g032780 | 44.796 | 538 | 242 | 8 | 1 | 483 | 1 | 538 | 1.77e-146 | 437 |
| MsG0280007539.01.T01 | MTR_8g069330 | 45.842 | 493 | 230 | 7 | 1 | 465 | 1 | 484 | 2.91e-135 | 407 |
| MsG0280007539.01.T01 | MTR_1g014070 | 38.540 | 493 | 266 | 7 | 1 | 463 | 1 | 486 | 1.35e-118 | 365 |
| MsG0280007539.01.T01 | MTR_5g015790 | 40.283 | 494 | 251 | 9 | 1 | 463 | 1 | 481 | 1.71e-116 | 360 |
| MsG0280007539.01.T01 | MTR_1g106430 | 36.417 | 508 | 276 | 7 | 1 | 473 | 1 | 496 | 4.31e-112 | 348 |
| MsG0280007539.01.T01 | MTR_4g093850 | 36.398 | 533 | 275 | 7 | 5 | 476 | 23 | 552 | 1.12e-105 | 333 |
| MsG0280007539.01.T01 | MTR_2g009340 | 35.185 | 540 | 279 | 7 | 5 | 476 | 23 | 559 | 2.49e-101 | 322 |
| MsG0280007539.01.T01 | MTR_2g018750 | 34.331 | 501 | 286 | 8 | 1 | 463 | 1 | 496 | 1.05e-88 | 286 |
| MsG0280007539.01.T01 | MTR_5g016060 | 34.783 | 460 | 276 | 7 | 25 | 465 | 39 | 493 | 2.36e-87 | 283 |
| MsG0280007539.01.T01 | MTR_4g093850 | 35.430 | 477 | 244 | 7 | 5 | 420 | 23 | 496 | 1.68e-86 | 278 |
| MsG0280007539.01.T01 | MTR_4g095430 | 34.716 | 458 | 278 | 9 | 25 | 465 | 12 | 465 | 1.56e-81 | 267 |
| MsG0280007539.01.T01 | MTR_8g090220 | 33.198 | 494 | 267 | 12 | 8 | 460 | 35 | 506 | 4.91e-81 | 264 |
| MsG0280007539.01.T01 | MTR_8g090220 | 33.469 | 493 | 265 | 12 | 8 | 459 | 35 | 505 | 3.65e-80 | 265 |
| MsG0280007539.01.T01 | MTR_1g094850 | 33.066 | 499 | 295 | 9 | 1 | 465 | 1 | 494 | 3.18e-78 | 259 |
| MsG0280007539.01.T01 | MTR_1g064360 | 30.957 | 491 | 297 | 9 | 1 | 463 | 1 | 477 | 9.08e-76 | 251 |
| MsG0280007539.01.T01 | MTR_2g084595 | 32.842 | 475 | 283 | 9 | 24 | 463 | 21 | 494 | 5.09e-75 | 251 |
| MsG0280007539.01.T01 | MTR_4g022330 | 32.128 | 470 | 295 | 6 | 25 | 473 | 33 | 499 | 2.16e-74 | 249 |
| MsG0280007539.01.T01 | MTR_8g078900 | 30.584 | 497 | 288 | 8 | 23 | 463 | 17 | 512 | 2.51e-73 | 247 |
| MsG0280007539.01.T01 | MTR_3g062540 | 30.853 | 457 | 281 | 6 | 25 | 465 | 23 | 460 | 1.21e-72 | 243 |
| MsG0280007539.01.T01 | MTR_2g048390 | 32.379 | 454 | 267 | 9 | 1 | 415 | 1 | 453 | 3.25e-70 | 234 |
| MsG0280007539.01.T01 | MTR_5g075640 | 30.538 | 465 | 281 | 6 | 25 | 465 | 24 | 470 | 1.81e-69 | 235 |
| MsG0280007539.01.T01 | MTR_7g108290 | 32.577 | 485 | 274 | 10 | 17 | 463 | 27 | 496 | 2.65e-69 | 237 |
| MsG0280007539.01.T01 | MTR_8g078900 | 30.705 | 482 | 277 | 8 | 38 | 463 | 2 | 482 | 5.16e-69 | 235 |
| MsG0280007539.01.T01 | MTR_7g073980 | 31.185 | 481 | 286 | 11 | 14 | 463 | 21 | 487 | 5.36e-68 | 233 |
| MsG0280007539.01.T01 | MTR_3g062540 | 31.651 | 436 | 263 | 7 | 46 | 465 | 2 | 418 | 8.00e-68 | 229 |
| MsG0280007539.01.T01 | MTR_8g078900 | 32.326 | 430 | 254 | 7 | 70 | 463 | 44 | 472 | 2.47e-67 | 230 |
| MsG0280007539.01.T01 | MTR_1g088885 | 30.247 | 486 | 280 | 10 | 17 | 463 | 27 | 492 | 1.72e-66 | 228 |
| MsG0280007539.01.T01 | MTR_5g075640 | 30.405 | 444 | 267 | 6 | 46 | 465 | 2 | 427 | 1.89e-63 | 218 |
| MsG0280007539.01.T01 | MTR_1g082690 | 29.844 | 449 | 271 | 8 | 29 | 463 | 61 | 479 | 2.03e-62 | 215 |
| MsG0280007539.01.T01 | MTR_2g084595 | 31.616 | 427 | 256 | 9 | 24 | 415 | 21 | 446 | 6.48e-60 | 206 |
| MsG0280007539.01.T01 | MTR_5g016060 | 32.283 | 381 | 234 | 7 | 104 | 465 | 4 | 379 | 3.55e-57 | 200 |
| MsG0280007539.01.T01 | MTR_8g078900 | 28.731 | 449 | 263 | 8 | 23 | 415 | 17 | 464 | 2.44e-54 | 191 |
| MsG0280007539.01.T01 | MTR_8g078900 | 30.366 | 382 | 229 | 7 | 70 | 415 | 44 | 424 | 1.02e-48 | 175 |
| MsG0280007539.01.T01 | MTR_2g102730 | 34.228 | 298 | 171 | 5 | 183 | 465 | 6 | 293 | 9.75e-41 | 153 |
| MsG0280007539.01.T01 | MTR_4g011530 | 34.982 | 283 | 151 | 6 | 201 | 465 | 46 | 313 | 3.21e-40 | 152 |
| MsG0280007539.01.T01 | MTR_4g074190 | 24.948 | 485 | 292 | 11 | 29 | 465 | 6 | 466 | 2.34e-33 | 134 |
| MsG0280007539.01.T01 | MTR_4g045767 | 27.685 | 419 | 254 | 12 | 70 | 465 | 50 | 442 | 4.48e-33 | 133 |
| MsG0280007539.01.T01 | MTR_4g074190 | 24.887 | 442 | 264 | 9 | 68 | 465 | 3 | 420 | 1.48e-30 | 125 |
| MsG0280007539.01.T01 | MTR_1g035720 | 24.950 | 505 | 298 | 14 | 29 | 480 | 6 | 482 | 4.58e-29 | 121 |
| MsG0280007539.01.T01 | MTR_4g074190 | 24.771 | 436 | 256 | 12 | 29 | 416 | 6 | 417 | 1.44e-27 | 116 |
| MsG0280007539.01.T01 | MTR_4g080720 | 70.312 | 64 | 19 | 0 | 1 | 64 | 1 | 64 | 4.55e-24 | 96.3 |
| MsG0280007539.01.T01 | MTR_1g105870 | 31.053 | 190 | 123 | 3 | 33 | 220 | 38 | 221 | 2.38e-23 | 100 |
| MsG0280007539.01.T01 | MTR_2g010890 | 23.451 | 452 | 284 | 15 | 100 | 527 | 8 | 421 | 2.58e-16 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007539.01.T01 | AT5G47800 | 55.536 | 569 | 217 | 6 | 1 | 552 | 1 | 550 | 0.0 | 637 |
| MsG0280007539.01.T01 | AT5G47800 | 55.536 | 569 | 217 | 6 | 1 | 552 | 1 | 550 | 0.0 | 637 |
| MsG0280007539.01.T01 | AT5G47800 | 55.536 | 569 | 217 | 6 | 1 | 552 | 1 | 550 | 0.0 | 637 |
| MsG0280007539.01.T01 | AT5G47800 | 55.536 | 569 | 217 | 6 | 1 | 552 | 114 | 663 | 0.0 | 636 |
| MsG0280007539.01.T01 | AT1G67900 | 43.970 | 539 | 243 | 8 | 1 | 485 | 1 | 534 | 4.10e-140 | 421 |
| MsG0280007539.01.T01 | AT1G67900 | 43.970 | 539 | 243 | 8 | 1 | 485 | 1 | 534 | 4.10e-140 | 421 |
| MsG0280007539.01.T01 | AT1G67900 | 43.970 | 539 | 243 | 8 | 1 | 485 | 1 | 534 | 4.10e-140 | 421 |
| MsG0280007539.01.T01 | AT1G67900 | 43.970 | 539 | 243 | 8 | 1 | 485 | 1 | 534 | 4.10e-140 | 421 |
| MsG0280007539.01.T01 | AT1G67900 | 43.970 | 539 | 243 | 8 | 1 | 485 | 1 | 534 | 4.10e-140 | 421 |
| MsG0280007539.01.T01 | AT1G67900 | 43.970 | 539 | 243 | 8 | 1 | 485 | 1 | 534 | 4.10e-140 | 421 |
| MsG0280007539.01.T01 | AT3G26490 | 39.147 | 539 | 258 | 12 | 1 | 483 | 1 | 525 | 2.95e-118 | 363 |
| MsG0280007539.01.T01 | AT3G26490 | 39.147 | 539 | 258 | 12 | 1 | 483 | 1 | 525 | 2.95e-118 | 363 |
| MsG0280007539.01.T01 | AT3G26490 | 39.147 | 539 | 258 | 12 | 1 | 483 | 1 | 525 | 2.95e-118 | 363 |
| MsG0280007539.01.T01 | AT4G31820 | 36.280 | 543 | 300 | 11 | 1 | 525 | 1 | 515 | 2.84e-117 | 360 |
| MsG0280007539.01.T01 | AT2G14820 | 37.302 | 504 | 277 | 7 | 1 | 473 | 1 | 496 | 1.14e-115 | 358 |
| MsG0280007539.01.T01 | AT2G14820 | 37.302 | 504 | 277 | 7 | 1 | 473 | 1 | 496 | 1.14e-115 | 358 |
| MsG0280007539.01.T01 | AT4G37590 | 39.264 | 489 | 265 | 8 | 1 | 473 | 1 | 473 | 2.24e-112 | 347 |
| MsG0280007539.01.T01 | AT2G23050 | 37.844 | 473 | 259 | 8 | 1 | 463 | 1 | 448 | 7.71e-110 | 338 |
| MsG0280007539.01.T01 | AT5G67440 | 38.821 | 492 | 270 | 10 | 1 | 471 | 1 | 482 | 3.82e-108 | 336 |
| MsG0280007539.01.T01 | AT5G67440 | 38.821 | 492 | 270 | 10 | 1 | 471 | 1 | 482 | 3.82e-108 | 336 |
| MsG0280007539.01.T01 | AT4G31820 | 35.714 | 490 | 270 | 10 | 53 | 525 | 1 | 462 | 4.01e-102 | 319 |
| MsG0280007539.01.T01 | AT3G26490 | 39.030 | 474 | 219 | 12 | 1 | 418 | 1 | 460 | 2.98e-98 | 308 |
| MsG0280007539.01.T01 | AT5G67440 | 38.803 | 451 | 246 | 9 | 41 | 471 | 5 | 445 | 1.08e-96 | 305 |
| MsG0280007539.01.T01 | AT5G64330 | 32.657 | 591 | 280 | 8 | 7 | 481 | 33 | 621 | 1.31e-90 | 295 |
| MsG0280007539.01.T01 | AT1G30440 | 34.185 | 509 | 286 | 11 | 1 | 463 | 1 | 506 | 3.40e-88 | 287 |
| MsG0280007539.01.T01 | AT5G03250 | 33.068 | 502 | 295 | 8 | 1 | 463 | 1 | 500 | 1.98e-82 | 270 |
| MsG0280007539.01.T01 | AT5G67385 | 32.969 | 458 | 283 | 8 | 25 | 465 | 24 | 474 | 2.07e-81 | 267 |
| MsG0280007539.01.T01 | AT5G13600 | 34.483 | 493 | 291 | 9 | 1 | 463 | 1 | 491 | 2.17e-81 | 267 |
| MsG0280007539.01.T01 | AT2G23050 | 38.655 | 357 | 190 | 6 | 111 | 463 | 1 | 332 | 9.53e-78 | 250 |
| MsG0280007539.01.T01 | AT5G67385 | 33.486 | 436 | 266 | 8 | 47 | 465 | 1 | 429 | 2.51e-76 | 253 |
| MsG0280007539.01.T01 | AT5G67385 | 33.486 | 436 | 266 | 8 | 47 | 465 | 1 | 429 | 2.51e-76 | 253 |
| MsG0280007539.01.T01 | AT5G67385 | 33.486 | 436 | 266 | 8 | 47 | 465 | 1 | 429 | 2.51e-76 | 253 |
| MsG0280007539.01.T01 | AT5G67385 | 33.486 | 436 | 266 | 8 | 47 | 465 | 1 | 429 | 2.51e-76 | 253 |
| MsG0280007539.01.T01 | AT2G30520 | 32.898 | 459 | 272 | 7 | 25 | 465 | 29 | 469 | 6.65e-75 | 250 |
| MsG0280007539.01.T01 | AT5G48800 | 31.398 | 465 | 275 | 6 | 25 | 465 | 40 | 484 | 4.72e-73 | 245 |
| MsG0280007539.01.T01 | AT5G10250 | 28.793 | 580 | 328 | 11 | 5 | 535 | 29 | 572 | 4.37e-72 | 243 |
| MsG0280007539.01.T01 | AT5G66560 | 31.091 | 550 | 286 | 12 | 23 | 494 | 16 | 550 | 4.49e-72 | 244 |
| MsG0280007539.01.T01 | AT5G10250 | 29.663 | 563 | 324 | 12 | 8 | 535 | 32 | 557 | 1.58e-71 | 241 |
| MsG0280007539.01.T01 | AT5G66560 | 33.189 | 461 | 259 | 10 | 68 | 494 | 66 | 511 | 8.79e-70 | 237 |
| MsG0280007539.01.T01 | AT5G66560 | 33.189 | 461 | 259 | 10 | 68 | 494 | 76 | 521 | 1.37e-69 | 237 |
| MsG0280007539.01.T01 | AT2G30520 | 32.877 | 438 | 258 | 7 | 46 | 465 | 2 | 421 | 4.48e-69 | 233 |
| MsG0280007539.01.T01 | AT2G30520 | 32.877 | 438 | 258 | 7 | 46 | 465 | 2 | 421 | 4.48e-69 | 233 |
| MsG0280007539.01.T01 | AT2G47860 | 31.590 | 478 | 275 | 10 | 23 | 465 | 34 | 494 | 7.58e-69 | 234 |
| MsG0280007539.01.T01 | AT1G03010 | 31.670 | 521 | 295 | 15 | 23 | 499 | 6 | 509 | 1.26e-68 | 233 |
| MsG0280007539.01.T01 | AT1G03010 | 31.520 | 533 | 302 | 16 | 11 | 499 | 22 | 535 | 1.40e-68 | 234 |
| MsG0280007539.01.T01 | AT3G49970 | 32.624 | 423 | 237 | 10 | 38 | 448 | 6 | 392 | 1.90e-68 | 231 |
| MsG0280007539.01.T01 | AT3G49970 | 32.624 | 423 | 237 | 10 | 38 | 448 | 6 | 392 | 1.90e-68 | 231 |
| MsG0280007539.01.T01 | AT1G03010 | 31.538 | 520 | 297 | 14 | 23 | 499 | 33 | 536 | 2.31e-68 | 233 |
| MsG0280007539.01.T01 | AT3G44820 | 31.687 | 486 | 277 | 10 | 29 | 463 | 26 | 507 | 1.22e-65 | 226 |
| MsG0280007539.01.T01 | AT2G47860 | 30.140 | 501 | 275 | 11 | 23 | 465 | 34 | 517 | 4.66e-64 | 222 |
| MsG0280007539.01.T01 | AT3G08660 | 28.872 | 523 | 322 | 13 | 19 | 520 | 27 | 520 | 4.10e-62 | 215 |
| MsG0280007539.01.T01 | AT3G50840 | 32.128 | 470 | 279 | 9 | 16 | 463 | 6 | 457 | 4.26e-61 | 212 |
| MsG0280007539.01.T01 | AT3G08570 | 30.271 | 479 | 294 | 12 | 13 | 463 | 22 | 488 | 1.39e-60 | 212 |
| MsG0280007539.01.T01 | AT5G64330 | 38.433 | 268 | 137 | 3 | 7 | 248 | 33 | 298 | 2.66e-54 | 196 |
| MsG0280007539.01.T01 | AT5G64330 | 37.154 | 253 | 126 | 2 | 262 | 481 | 369 | 621 | 7.42e-39 | 152 |
| MsG0280007539.01.T01 | AT5G66560 | 30.258 | 466 | 245 | 10 | 26 | 415 | 19 | 480 | 2.51e-53 | 189 |
| MsG0280007539.01.T01 | AT3G50840 | 31.891 | 439 | 259 | 9 | 47 | 463 | 1 | 421 | 3.86e-53 | 190 |
| MsG0280007539.01.T01 | AT3G50840 | 31.891 | 439 | 259 | 9 | 47 | 463 | 1 | 421 | 3.86e-53 | 190 |
| MsG0280007539.01.T01 | AT3G08660 | 28.630 | 489 | 299 | 13 | 53 | 520 | 1 | 460 | 9.20e-53 | 189 |
| MsG0280007539.01.T01 | AT2G47860 | 30.841 | 428 | 244 | 10 | 23 | 415 | 34 | 444 | 2.62e-52 | 186 |
| MsG0280007539.01.T01 | AT5G03250 | 30.256 | 390 | 233 | 7 | 111 | 463 | 1 | 388 | 2.04e-48 | 176 |
| MsG0280007539.01.T01 | AT2G47860 | 29.268 | 451 | 244 | 11 | 23 | 415 | 34 | 467 | 9.28e-48 | 174 |
| MsG0280007539.01.T01 | AT3G08660 | 28.571 | 420 | 253 | 11 | 19 | 418 | 27 | 419 | 1.96e-46 | 169 |
| MsG0280007539.01.T01 | AT5G64330 | 38.983 | 236 | 116 | 3 | 39 | 248 | 6 | 239 | 6.94e-46 | 171 |
| MsG0280007539.01.T01 | AT5G64330 | 37.154 | 253 | 126 | 2 | 262 | 481 | 310 | 562 | 3.33e-39 | 152 |
| MsG0280007539.01.T01 | AT1G52770 | 34.494 | 316 | 175 | 7 | 201 | 495 | 28 | 332 | 3.44e-44 | 163 |
| MsG0280007539.01.T01 | AT2G47860 | 28.974 | 390 | 228 | 9 | 111 | 465 | 1 | 376 | 1.33e-42 | 160 |
| MsG0280007539.01.T01 | AT2G47860 | 28.974 | 390 | 228 | 9 | 111 | 465 | 1 | 376 | 1.33e-42 | 160 |
| MsG0280007539.01.T01 | AT5G48130 | 27.097 | 465 | 280 | 14 | 24 | 463 | 37 | 467 | 6.17e-41 | 157 |
| MsG0280007539.01.T01 | AT3G03510 | 31.061 | 396 | 217 | 11 | 80 | 463 | 8 | 359 | 1.02e-39 | 151 |
| MsG0280007539.01.T01 | AT5G17580 | 26.526 | 475 | 305 | 9 | 10 | 463 | 4 | 455 | 5.90e-37 | 145 |
| MsG0280007539.01.T01 | AT5G17580 | 27.465 | 426 | 266 | 8 | 59 | 463 | 37 | 440 | 1.56e-36 | 144 |
| MsG0280007539.01.T01 | AT3G15570 | 30.945 | 307 | 175 | 7 | 189 | 468 | 15 | 311 | 4.85e-35 | 138 |
| MsG0280007539.01.T01 | AT3G19850 | 25.207 | 484 | 299 | 11 | 21 | 463 | 2 | 463 | 7.00e-35 | 139 |
| MsG0280007539.01.T01 | AT3G22104 | 26.770 | 452 | 259 | 17 | 29 | 448 | 7 | 418 | 4.51e-27 | 115 |
| MsG0280007539.01.T01 | AT1G50280 | 22.931 | 423 | 286 | 7 | 66 | 459 | 16 | 427 | 2.75e-26 | 113 |
| MsG0280007539.01.T01 | AT1G50280 | 22.931 | 423 | 286 | 7 | 66 | 459 | 49 | 460 | 3.29e-26 | 113 |
| MsG0280007539.01.T01 | AT3G22104 | 26.316 | 380 | 211 | 14 | 98 | 448 | 4 | 343 | 7.71e-17 | 83.6 |
| MsG0280007539.01.T01 | AT3G22104 | 26.316 | 380 | 211 | 14 | 98 | 448 | 4 | 343 | 7.71e-17 | 83.6 |
| MsG0280007539.01.T01 | AT3G22104 | 26.316 | 380 | 211 | 14 | 98 | 448 | 4 | 343 | 7.71e-17 | 83.6 |
Find 108 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAGCATTTCAAGTCATTT+AGG | 0.230690 | 2:+16881590 | MsG0280007539.01.T01:CDS |
| GTTCTTCCACCACAGCTAAT+TGG | 0.289528 | 2:+16881386 | MsG0280007539.01.T01:CDS |
| GCACTTCAGGGGACAATCTT+TGG | 0.295952 | 2:-16882398 | None:intergenic |
| AAACAACATAAGCTACTTCT+AGG | 0.305988 | 2:+16882528 | MsG0280007539.01.T01:CDS |
| GGCAATAAACATTTATCTTA+AGG | 0.309851 | 2:+16881934 | MsG0280007539.01.T01:CDS |
| ACAGCGTGCGCACGCACTTC+AGG | 0.311538 | 2:-16882411 | None:intergenic |
| CATTTGCGATGCTGAACTTC+CGG | 0.323956 | 2:-16881468 | None:intergenic |
| AGAAGTTATAAATCAGAATA+TGG | 0.331860 | 2:+16882813 | MsG0280007539.01.T01:CDS |
| TCCAAGTTCACCATGCTTCC+TGG | 0.340331 | 2:-16882762 | None:intergenic |
| GTCAAGGAAGAAAGTATTCC+AGG | 0.354497 | 2:+16882744 | MsG0280007539.01.T01:CDS |
| GCCTTCCTTTACCTGTGATA+AGG | 0.357490 | 2:-16880917 | None:intergenic |
| ACCCTGGTTCTGTGGACAAC+AGG | 0.367234 | 2:+16881756 | MsG0280007539.01.T01:CDS |
| AGAGTTAGTTCAAGTTGTAT+TGG | 0.373725 | 2:+16881703 | MsG0280007539.01.T01:CDS |
| ACTCTACATCATAAGAATTC+AGG | 0.379747 | 2:-16881685 | None:intergenic |
| ATCATAAAGGTTAAAAGTTC+CGG | 0.381413 | 2:+16881449 | MsG0280007539.01.T01:CDS |
| TTTAGTTCATGCATTCTTGA+AGG | 0.388872 | 2:+16880781 | MsG0280007539.01.T01:CDS |
| CCTTCCTTTACCTGTGATAA+GGG | 0.392042 | 2:-16880916 | None:intergenic |
| CTTTCTCTTGGTCATAGTAT+AGG | 0.394661 | 2:-16882473 | None:intergenic |
| GTGATTATGTGCAGGTTAAA+TGG | 0.396517 | 2:+16881228 | MsG0280007539.01.T01:intron |
| AGCTGCACAACAGTTCTTAA+TGG | 0.398507 | 2:-16882450 | None:intergenic |
| TCCTCAGTCCACCAATCCTT+TGG | 0.399964 | 2:-16881302 | None:intergenic |
| GTTGAGAGGGGAAACTTTGT+AGG | 0.400848 | 2:+16880742 | MsG0280007539.01.T01:CDS |
| TCCAGGAAGCATGGTGAACT+TGG | 0.413318 | 2:+16882761 | MsG0280007539.01.T01:CDS |
| CAACGGACTCATTCATTTGA+AGG | 0.422727 | 2:-16880723 | None:intergenic |
| CCTTGCCACAACTTGAAGAT+AGG | 0.424728 | 2:-16881825 | None:intergenic |
| TTTCCTTTGAGTCTTTCTCT+TGG | 0.425900 | 2:-16882485 | None:intergenic |
| AGGGTCAACACAAAACTAAA+AGG | 0.432339 | 2:+16882670 | MsG0280007539.01.T01:CDS |
| CAGAACAAAGTCTTTGTAGA+AGG | 0.439216 | 2:-16880552 | None:intergenic |
| GATCATAAGCAAATGCTCAT+AGG | 0.443050 | 2:+16882783 | MsG0280007539.01.T01:CDS |
| GCTGAAAGTGTACCAGCTAT+TGG | 0.449675 | 2:+16881884 | MsG0280007539.01.T01:CDS |
| GTTCATGCATTCTTGAAGGT+TGG | 0.453604 | 2:+16880785 | MsG0280007539.01.T01:CDS |
| TAAGATAAATGTTTATTGCC+TGG | 0.454792 | 2:-16881931 | None:intergenic |
| TTAAGATCAATCAGAAAAGT+TGG | 0.457461 | 2:+16881788 | MsG0280007539.01.T01:CDS |
| GAAAAGATCTATATTTAGAA+TGG | 0.463506 | 2:-16881330 | None:intergenic |
| ATCATTCTGTTCCAAAGGAT+TGG | 0.466212 | 2:+16881291 | MsG0280007539.01.T01:CDS |
| CGGAAGTTCAGCATCGCAAA+TGG | 0.468266 | 2:+16881469 | MsG0280007539.01.T01:CDS |
| CAGCGTGCGCACGCACTTCA+GGG | 0.472237 | 2:-16882410 | None:intergenic |
| GTTAGATGATAAATTAGCCT+TGG | 0.472933 | 2:+16882692 | MsG0280007539.01.T01:CDS |
| CACTAGAGATAGCCATGGTA+AGG | 0.474362 | 2:+16882569 | MsG0280007539.01.T01:CDS |
| AATGCATAAACAGGTGCATT+CGG | 0.477091 | 2:+16882329 | MsG0280007539.01.T01:intron |
| TCTTGCTGAGAGTAGAGAAA+AGG | 0.481826 | 2:+16882650 | MsG0280007539.01.T01:CDS |
| TTCCTGTTGTCCACAGAACC+AGG | 0.482017 | 2:-16881758 | None:intergenic |
| TCTTGAATTCTTCCTTGTCA+AGG | 0.482245 | 2:-16882602 | None:intergenic |
| CATCGCAAATGGAAGAATCC+AGG | 0.483080 | 2:+16881480 | MsG0280007539.01.T01:CDS |
| GCTATGAAGTTCATGAAACT+TGG | 0.484891 | 2:+16880136 | None:intergenic |
| TGCTCTAATCTGCCAATAGC+TGG | 0.487466 | 2:-16881896 | None:intergenic |
| CCAGAGTGGTCTGAGAATCT+TGG | 0.492441 | 2:+16880847 | MsG0280007539.01.T01:CDS |
| GATGGTTATAAGAGGAGTCA+AGG | 0.495344 | 2:+16882728 | MsG0280007539.01.T01:CDS |
| AGCCATGGTAAGGGATCTCT+TGG | 0.500525 | 2:+16882579 | MsG0280007539.01.T01:CDS |
| GTGGTTACCTTGCATCATAA+AGG | 0.502589 | 2:+16881436 | MsG0280007539.01.T01:CDS |
| TATAAGATAAGTTGTATCGT+TGG | 0.507629 | 2:-16880410 | None:intergenic |
| TCTCCACTTGTTTCAAAATG+TGG | 0.518950 | 2:+16880529 | MsG0280007539.01.T01:CDS |
| ATTCTGTTCCAAAGGATTGG+TGG | 0.520945 | 2:+16881294 | MsG0280007539.01.T01:CDS |
| GTTGTAACCGGGCCTAGTGT+AGG | 0.526256 | 2:-16881258 | None:intergenic |
| CTTGCTGAGAGTAGAGAAAA+GGG | 0.528622 | 2:+16882651 | MsG0280007539.01.T01:CDS |
| TGATTCCTATCTTCAAGTTG+TGG | 0.532607 | 2:+16881820 | MsG0280007539.01.T01:CDS |
| GCGGAAAAGAAGCGCTTGTG+TGG | 0.534519 | 2:+16882363 | MsG0280007539.01.T01:CDS |
| CCATGGCTATCTCTAGTGGC+AGG | 0.536106 | 2:-16882564 | None:intergenic |
| AGCATGATTCCTGCAGATAG+AGG | 0.543978 | 2:+16881536 | MsG0280007539.01.T01:CDS |
| CTATCTTCAAGTTGTGGCAA+GGG | 0.544076 | 2:+16881826 | MsG0280007539.01.T01:CDS |
| TGCATGTATATGCATGTAAG+TGG | 0.544550 | 2:+16881417 | MsG0280007539.01.T01:CDS |
| GATAGAGGTTCAGTTTCAGT+TGG | 0.544692 | 2:+16881551 | MsG0280007539.01.T01:CDS |
| GAAACTGAACCTCTATCTGC+AGG | 0.546404 | 2:-16881545 | None:intergenic |
| AATGAATGAGTCCGTTGAGA+GGG | 0.548065 | 2:+16880729 | MsG0280007539.01.T01:CDS |
| GCTTCACCAATTAGCTGTGG+TGG | 0.553316 | 2:-16881392 | None:intergenic |
| CCTATCTTCAAGTTGTGGCA+AGG | 0.556195 | 2:+16881825 | MsG0280007539.01.T01:CDS |
| TCCTACACCTACACTAGGCC+CGG | 0.558420 | 2:+16881251 | MsG0280007539.01.T01:CDS |
| AGTTCTTACACCCTTATCAC+AGG | 0.568010 | 2:+16880906 | MsG0280007539.01.T01:CDS |
| AGTGGCGTGCAACGTTGCAA+TGG | 0.572556 | 2:-16880815 | None:intergenic |
| CTAGAGCTTAATGATATGCC+TGG | 0.572616 | 2:+16880601 | MsG0280007539.01.T01:CDS |
| AGAGCATCATTCTGTTCCAA+AGG | 0.584180 | 2:+16881286 | MsG0280007539.01.T01:CDS |
| CCAAGATTCTCAGACCACTC+TGG | 0.584674 | 2:-16880847 | None:intergenic |
| GGCATATCATTAAGCTCTAG+AGG | 0.584689 | 2:-16880598 | None:intergenic |
| AAGAATCTACCCTGGTTCTG+TGG | 0.585804 | 2:+16881748 | MsG0280007539.01.T01:CDS |
| TTCTCTACTCTCAGCAAGAG+AGG | 0.587532 | 2:-16882646 | None:intergenic |
| AGAGCATGATGATTTGTACC+AGG | 0.593159 | 2:+16881913 | MsG0280007539.01.T01:CDS |
| AGAAAGTATTCCAGGAAGCA+TGG | 0.597512 | 2:+16882752 | MsG0280007539.01.T01:CDS |
| AGAGCTACAAACTTTGACAC+TGG | 0.597683 | 2:-16881860 | None:intergenic |
| ATCGCAAATGGAAGAATCCA+GGG | 0.604485 | 2:+16881481 | MsG0280007539.01.T01:CDS |
| CTTACCATGGCTATCTCTAG+TGG | 0.605169 | 2:-16882568 | None:intergenic |
| ATAAGCAAATGCTCATAGGA+AGG | 0.605385 | 2:+16882787 | MsG0280007539.01.T01:CDS |
| TCTACACGGAACAAGCTACC+AGG | 0.606588 | 2:+16880176 | MsG0280007539.01.T01:CDS |
| AGCTTAGCAGCACAAAGTGA+AGG | 0.608513 | 2:-16880700 | None:intergenic |
| TACAAAGTTTCCCCTCTCAA+CGG | 0.611119 | 2:-16880740 | None:intergenic |
| TGACCAAGAGAAAGACTCAA+AGG | 0.612388 | 2:+16882482 | MsG0280007539.01.T01:CDS |
| AGCGTGCGCACGCACTTCAG+GGG | 0.616562 | 2:-16882409 | None:intergenic |
| GGGATCTCTTGGCCTTGACA+AGG | 0.618342 | 2:+16882590 | MsG0280007539.01.T01:CDS |
| CGGAAAAGAAGCGCTTGTGT+GGG | 0.622895 | 2:+16882364 | MsG0280007539.01.T01:CDS |
| TCAAAAGCTTCTGATCCACC+AGG | 0.628037 | 2:-16880619 | None:intergenic |
| AAATGAATGAGTCCGTTGAG+AGG | 0.628513 | 2:+16880728 | MsG0280007539.01.T01:CDS |
| GGTGCATTCGGACTTGAGCA+AGG | 0.634297 | 2:+16882341 | MsG0280007539.01.T01:intron |
| ACTAGAGATAGCCATGGTAA+GGG | 0.634972 | 2:+16882570 | MsG0280007539.01.T01:CDS |
| TCCTGTTGTCCACAGAACCA+GGG | 0.640405 | 2:-16881757 | None:intergenic |
| AGTTCATGAAACTTGGAACA+AGG | 0.644491 | 2:+16880143 | MsG0280007539.01.T01:CDS |
| ATGAATGAGTCCGTTGAGAG+GGG | 0.649978 | 2:+16880730 | MsG0280007539.01.T01:CDS |
| GAGCTTAATGATATGCCTGG+TGG | 0.663018 | 2:+16880604 | MsG0280007539.01.T01:CDS |
| AATGGTCCTACACCTACACT+AGG | 0.678371 | 2:+16881246 | MsG0280007539.01.T01:CDS |
| TACAACTTATCTTATACACA+AGG | 0.683273 | 2:+16880417 | MsG0280007539.01.T01:CDS |
| GGCCAAGAGATCCCTTACCA+TGG | 0.685445 | 2:-16882581 | None:intergenic |
| AAGGTCAGATACTTTCTACA+CGG | 0.691782 | 2:+16880162 | MsG0280007539.01.T01:CDS |
| AAAGCTTCACCAATTAGCTG+TGG | 0.694004 | 2:-16881395 | None:intergenic |
| ACCGGGCCTAGTGTAGGTGT+AGG | 0.701731 | 2:-16881252 | None:intergenic |
| CCTGCCACTAGAGATAGCCA+TGG | 0.709790 | 2:+16882564 | MsG0280007539.01.T01:CDS |
| TCCAAAGGATTGGTGGACTG+AGG | 0.711549 | 2:+16881301 | MsG0280007539.01.T01:CDS |
| AAGTAGCATACAGTTTCACG+AGG | 0.711955 | 2:+16881649 | MsG0280007539.01.T01:CDS |
| CCACTCTGGTAACTTCTCAG+TGG | 0.722395 | 2:-16880833 | None:intergenic |
| GCATTCGGACTTGAGCAAGG+CGG | 0.760136 | 2:+16882344 | MsG0280007539.01.T01:CDS |
| CCACTGAGAAGTTACCAGAG+TGG | 0.775962 | 2:+16880833 | MsG0280007539.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATAAAAGTATATTAATG+AGG | + | Chr2:16881078-16881097 | MsG0280007539.01.T01:intron | 10.0% |
| !!! | AAATAAAAGTATATTAATGA+GGG | + | Chr2:16881079-16881098 | MsG0280007539.01.T01:intron | 10.0% |
| !!! | ATTTTCAATGTTTTAAAAAA+CGG | + | Chr2:16882138-16882157 | MsG0280007539.01.T01:intron | 10.0% |
| !! | AGAAGTTATAAATCAGAATA+TGG | + | Chr2:16882813-16882832 | MsG0280007539.01.T01:CDS | 20.0% |
| !! | ATAAATCTTGGTTATATCTA+TGG | + | Chr2:16882281-16882300 | MsG0280007539.01.T01:intron | 20.0% |
| !! | CATTAATAAATAGTAGTTAG+CGG | + | Chr2:16881032-16881051 | MsG0280007539.01.T01:intron | 20.0% |
| !! | CATTCATGATTATGATAATA+AGG | - | Chr2:16880346-16880365 | None:intergenic | 20.0% |
| !! | GAAAAGATCTATATTTAGAA+TGG | - | Chr2:16881333-16881352 | None:intergenic | 20.0% |
| !! | TATAACCAAGATTTATAATG+TGG | - | Chr2:16882277-16882296 | None:intergenic | 20.0% |
| !! | TTTGATATTGCAGAAATTTA+CGG | - | Chr2:16882235-16882254 | None:intergenic | 20.0% |
| !!! | GAACATTTTTTGTTTAACAA+TGG | + | Chr2:16881206-16881225 | MsG0280007539.01.T01:intron | 20.0% |
| !!! | TAAACTGTCTTAAATTTTCA+TGG | + | Chr2:16882006-16882025 | MsG0280007539.01.T01:intron | 20.0% |
| !!! | TTGATTGATAATCTAAAATG+AGG | + | Chr2:16881122-16881141 | MsG0280007539.01.T01:intron | 20.0% |
| ! | ACAAAATCAAATCTTATGAG+GGG | - | Chr2:16880953-16880972 | None:intergenic | 25.0% |
| ! | ACAAGTAAATACTCCAAATA+TGG | + | Chr2:16881154-16881173 | MsG0280007539.01.T01:intron | 25.0% |
| ! | AGACAAAATCAAATCTTATG+AGG | - | Chr2:16880955-16880974 | None:intergenic | 25.0% |
| ! | ATCATAAAGGTTAAAAGTTC+CGG | + | Chr2:16881449-16881468 | MsG0280007539.01.T01:CDS | 25.0% |
| ! | ATTATCATAATCATGAATGC+AGG | + | Chr2:16880347-16880366 | MsG0280007539.01.T01:intron | 25.0% |
| ! | GACAAAATCAAATCTTATGA+GGG | - | Chr2:16880954-16880973 | None:intergenic | 25.0% |
| ! | GGCAATAAACATTTATCTTA+AGG | + | Chr2:16881934-16881953 | MsG0280007539.01.T01:CDS | 25.0% |
| ! | TAAGATAAATGTTTATTGCC+TGG | - | Chr2:16881934-16881953 | None:intergenic | 25.0% |
| ! | TACAACTTATCTTATACACA+AGG | + | Chr2:16880417-16880436 | MsG0280007539.01.T01:CDS | 25.0% |
| ! | TATAAGATAAGTTGTATCGT+TGG | - | Chr2:16880413-16880432 | None:intergenic | 25.0% |
| ! | TCTCAAATCAAATAATGATG+TGG | - | Chr2:16880277-16880296 | None:intergenic | 25.0% |
| ! | TGTGAATGAAATAACATGAT+TGG | - | Chr2:16881979-16881998 | None:intergenic | 25.0% |
| ! | TTAAGATCAATCAGAAAAGT+TGG | + | Chr2:16881788-16881807 | MsG0280007539.01.T01:CDS | 25.0% |
| ! | TTATCTTATACACAAGGTAT+CGG | + | Chr2:16880423-16880442 | MsG0280007539.01.T01:intron | 25.0% |
| ! | TTCATCTGTGGTTTATAATT+AGG | + | Chr2:16880207-16880226 | MsG0280007539.01.T01:intron | 25.0% |
| !! | AGATTTTGTTGACAAGATAT+AGG | + | Chr2:16880294-16880313 | MsG0280007539.01.T01:intron | 25.0% |
| !!! | AATTTTTCTGTTTTTTTCCC+TGG | - | Chr2:16881501-16881520 | None:intergenic | 25.0% |
| !!! | TGGAAAGTTTTTTGAAGTTT+TGG | + | Chr2:16881723-16881742 | MsG0280007539.01.T01:CDS | 25.0% |
| AAACAACATAAGCTACTTCT+AGG | + | Chr2:16882528-16882547 | MsG0280007539.01.T01:CDS | 30.0% | |
| ACTCTACATCATAAGAATTC+AGG | - | Chr2:16881688-16881707 | None:intergenic | 30.0% | |
| GAGAAAAAGATGGTTATAAG+AGG | + | Chr2:16882720-16882739 | MsG0280007539.01.T01:CDS | 30.0% | |
| TATCGGAATTAAATTGAGTG+TGG | + | Chr2:16880440-16880459 | MsG0280007539.01.T01:intron | 30.0% | |
| TGTGACCACATTATAAATCT+TGG | + | Chr2:16882269-16882288 | MsG0280007539.01.T01:intron | 30.0% | |
| TGTTGACAAGATATAGGTAT+AGG | + | Chr2:16880300-16880319 | MsG0280007539.01.T01:intron | 30.0% | |
| ! | CTTTTAACCTTTATGATGCA+AGG | - | Chr2:16881446-16881465 | None:intergenic | 30.0% |
| ! | GTCAAGTCAGCTTTTAATAT+AGG | + | Chr2:16882112-16882131 | MsG0280007539.01.T01:intron | 30.0% |
| ! | GTTAGATGATAAATTAGCCT+TGG | + | Chr2:16882692-16882711 | MsG0280007539.01.T01:CDS | 30.0% |
| ! | TTGAGCATTTCAAGTCATTT+AGG | + | Chr2:16881590-16881609 | MsG0280007539.01.T01:CDS | 30.0% |
| ! | TTTAGTTCATGCATTCTTGA+AGG | + | Chr2:16880781-16880800 | MsG0280007539.01.T01:CDS | 30.0% |
| ! | TTTTTGCAACTTTGTACTAG+AGG | - | Chr2:16882511-16882530 | None:intergenic | 30.0% |
| !! | AGAGTTAGTTCAAGTTGTAT+TGG | + | Chr2:16881703-16881722 | MsG0280007539.01.T01:CDS | 30.0% |
| !! | TTGGTTTTTATCACAAGATC+AGG | - | Chr2:16880394-16880413 | None:intergenic | 30.0% |
| AAGGTCAGATACTTTCTACA+CGG | + | Chr2:16880162-16880181 | MsG0280007539.01.T01:CDS | 35.0% | |
| AATGCATAAACAGGTGCATT+CGG | + | Chr2:16882329-16882348 | MsG0280007539.01.T01:intron | 35.0% | |
| AGGGTCAACACAAAACTAAA+AGG | + | Chr2:16882670-16882689 | MsG0280007539.01.T01:CDS | 35.0% | |
| AGTTCATGAAACTTGGAACA+AGG | + | Chr2:16880143-16880162 | MsG0280007539.01.T01:CDS | 35.0% | |
| ATAAGCAAATGCTCATAGGA+AGG | + | Chr2:16882787-16882806 | MsG0280007539.01.T01:CDS | 35.0% | |
| ATCATTCTGTTCCAAAGGAT+TGG | + | Chr2:16881291-16881310 | MsG0280007539.01.T01:CDS | 35.0% | |
| ATTAGACCCTTTACGACAAT+TGG | + | Chr2:16882036-16882055 | MsG0280007539.01.T01:intron | 35.0% | |
| CACAGATGAAAATGAATACC+TGG | - | Chr2:16880197-16880216 | None:intergenic | 35.0% | |
| CAGAAATTTACGGTCAAATG+AGG | - | Chr2:16882225-16882244 | None:intergenic | 35.0% | |
| CAGAACAAAGTCTTTGTAGA+AGG | - | Chr2:16880555-16880574 | None:intergenic | 35.0% | |
| CTCTAACTAAGTGTCTTTCA+AGG | + | Chr2:16880980-16880999 | MsG0280007539.01.T01:intron | 35.0% | |
| CTTTCTCTTGGTCATAGTAT+AGG | - | Chr2:16882476-16882495 | None:intergenic | 35.0% | |
| GAAAGACACTTAGTTAGAGA+CGG | - | Chr2:16880979-16880998 | None:intergenic | 35.0% | |
| GATCATAAGCAAATGCTCAT+AGG | + | Chr2:16882783-16882802 | MsG0280007539.01.T01:CDS | 35.0% | |
| GTGATTATGTGCAGGTTAAA+TGG | + | Chr2:16881228-16881247 | MsG0280007539.01.T01:intron | 35.0% | |
| TAACAATGGTGATTATGTGC+AGG | + | Chr2:16881220-16881239 | MsG0280007539.01.T01:intron | 35.0% | |
| TCTCCACTTGTTTCAAAATG+TGG | + | Chr2:16880529-16880548 | MsG0280007539.01.T01:CDS | 35.0% | |
| TCTTGAATTCTTCCTTGTCA+AGG | - | Chr2:16882605-16882624 | None:intergenic | 35.0% | |
| TGCATGTATATGCATGTAAG+TGG | + | Chr2:16881417-16881436 | MsG0280007539.01.T01:CDS | 35.0% | |
| TGTGTGTTCAATGCATAAAC+AGG | + | Chr2:16882320-16882339 | MsG0280007539.01.T01:intron | 35.0% | |
| TTAGACCCTTTACGACAATT+GGG | + | Chr2:16882037-16882056 | MsG0280007539.01.T01:intron | 35.0% | |
| TTTCCTTTGAGTCTTTCTCT+TGG | - | Chr2:16882488-16882507 | None:intergenic | 35.0% | |
| ! | ATGCTCTTTTCTGTTGTAAC+CGG | - | Chr2:16881273-16881292 | None:intergenic | 35.0% |
| ! | CAGGTATTCATTTTCATCTG+TGG | + | Chr2:16880195-16880214 | MsG0280007539.01.T01:intron | 35.0% |
| ! | CATCTTTTTCTCAAAGTCCA+AGG | - | Chr2:16882712-16882731 | None:intergenic | 35.0% |
| ! | CTCTTATGAAGTGCCATATT+TGG | - | Chr2:16881170-16881189 | None:intergenic | 35.0% |
| ! | CTTGGACTTTGAGAAAAAGA+TGG | + | Chr2:16882710-16882729 | MsG0280007539.01.T01:CDS | 35.0% |
| ! | CTTTGTGCAAAGTTTTGCTA+TGG | + | Chr2:16880643-16880662 | MsG0280007539.01.T01:CDS | 35.0% |
| ! | GTTTTTATCACAAGATCAGG+AGG | - | Chr2:16880391-16880410 | None:intergenic | 35.0% |
| ! | TCTTATGAGGGGAAGTTTTA+TGG | - | Chr2:16880942-16880961 | None:intergenic | 35.0% |
| !! | TGATTCCTATCTTCAAGTTG+TGG | + | Chr2:16881820-16881839 | MsG0280007539.01.T01:CDS | 35.0% |
| !! | TTTTGGAAAAGAATCTACCC+TGG | + | Chr2:16881740-16881759 | MsG0280007539.01.T01:CDS | 35.0% |
| AAAGCTTCACCAATTAGCTG+TGG | - | Chr2:16881398-16881417 | None:intergenic | 40.0% | |
| AAATGAATGAGTCCGTTGAG+AGG | + | Chr2:16880728-16880747 | MsG0280007539.01.T01:CDS | 40.0% | |
| AAGTAGCATACAGTTTCACG+AGG | + | Chr2:16881649-16881668 | MsG0280007539.01.T01:CDS | 40.0% | |
| AATGAATGAGTCCGTTGAGA+GGG | + | Chr2:16880729-16880748 | MsG0280007539.01.T01:CDS | 40.0% | |
| ACTAGAGATAGCCATGGTAA+GGG | + | Chr2:16882570-16882589 | MsG0280007539.01.T01:CDS | 40.0% | |
| ACTTAGCCCAATTGTCGTAA+AGG | - | Chr2:16882046-16882065 | None:intergenic | 40.0% | |
| AGAGCTACAAACTTTGACAC+TGG | - | Chr2:16881863-16881882 | None:intergenic | 40.0% | |
| AGCTGCACAACAGTTCTTAA+TGG | - | Chr2:16882453-16882472 | None:intergenic | 40.0% | |
| AGTTCTTACACCCTTATCAC+AGG | + | Chr2:16880906-16880925 | MsG0280007539.01.T01:CDS | 40.0% | |
| ATCGCAAATGGAAGAATCCA+GGG | + | Chr2:16881481-16881500 | MsG0280007539.01.T01:CDS | 40.0% | |
| ATTCTGTTCCAAAGGATTGG+TGG | + | Chr2:16881294-16881313 | MsG0280007539.01.T01:CDS | 40.0% | |
| CCTTCCTTTACCTGTGATAA+GGG | - | Chr2:16880919-16880938 | None:intergenic | 40.0% | |
| CTAGAGCTTAATGATATGCC+TGG | + | Chr2:16880601-16880620 | MsG0280007539.01.T01:CDS | 40.0% | |
| CTTAGCCCAATTGTCGTAAA+GGG | - | Chr2:16882045-16882064 | None:intergenic | 40.0% | |
| CTTGCTGAGAGTAGAGAAAA+GGG | + | Chr2:16882651-16882670 | MsG0280007539.01.T01:CDS | 40.0% | |
| GATAGAGGTTCAGTTTCAGT+TGG | + | Chr2:16881551-16881570 | MsG0280007539.01.T01:CDS | 40.0% | |
| GATGGTTATAAGAGGAGTCA+AGG | + | Chr2:16882728-16882747 | MsG0280007539.01.T01:CDS | 40.0% | |
| GTGGTTACCTTGCATCATAA+AGG | + | Chr2:16881436-16881455 | MsG0280007539.01.T01:CDS | 40.0% | |
| GTTCATGCATTCTTGAAGGT+TGG | + | Chr2:16880785-16880804 | MsG0280007539.01.T01:CDS | 40.0% | |
| TACAAAGTTTCCCCTCTCAA+CGG | - | Chr2:16880743-16880762 | None:intergenic | 40.0% | |
| TACACCCTTATCACAGGTAA+AGG | + | Chr2:16880912-16880931 | MsG0280007539.01.T01:intron | 40.0% | |
| TCTTGCTGAGAGTAGAGAAA+AGG | + | Chr2:16882650-16882669 | MsG0280007539.01.T01:CDS | 40.0% | |
| TGACCAAGAGAAAGACTCAA+AGG | + | Chr2:16882482-16882501 | MsG0280007539.01.T01:CDS | 40.0% | |
| ! | AGAGCATCATTCTGTTCCAA+AGG | + | Chr2:16881286-16881305 | MsG0280007539.01.T01:CDS | 40.0% |
| ! | AGAGCATGATGATTTGTACC+AGG | + | Chr2:16881913-16881932 | MsG0280007539.01.T01:CDS | 40.0% |
| ! | CAACGGACTCATTCATTTGA+AGG | - | Chr2:16880726-16880745 | None:intergenic | 40.0% |
| ! | CTGTATTGTCAGGGTTTTTG+AGG | + | Chr2:16882180-16882199 | MsG0280007539.01.T01:intron | 40.0% |
| ! | GGCATATCATTAAGCTCTAG+AGG | - | Chr2:16880601-16880620 | None:intergenic | 40.0% |
| ! | TGCTCTTTTCTGTTGTAACC+GGG | - | Chr2:16881272-16881291 | None:intergenic | 40.0% |
| !! | AGAAAGTATTCCAGGAAGCA+TGG | + | Chr2:16882752-16882771 | MsG0280007539.01.T01:CDS | 40.0% |
| !! | CTATCTTCAAGTTGTGGCAA+GGG | + | Chr2:16881826-16881845 | MsG0280007539.01.T01:CDS | 40.0% |
| !! | GTCAAGGAAGAAAGTATTCC+AGG | + | Chr2:16882744-16882763 | MsG0280007539.01.T01:CDS | 40.0% |
| !!! | AGGCCACATTTTGAAACAAG+TGG | - | Chr2:16880535-16880554 | None:intergenic | 40.0% |
| AATGGTCCTACACCTACACT+AGG | + | Chr2:16881246-16881265 | MsG0280007539.01.T01:CDS | 45.0% | |
| AGCATGATTCCTGCAGATAG+AGG | + | Chr2:16881536-16881555 | MsG0280007539.01.T01:CDS | 45.0% | |
| AGCTTAGCAGCACAAAGTGA+AGG | - | Chr2:16880703-16880722 | None:intergenic | 45.0% | |
| ATGAATGAGTCCGTTGAGAG+GGG | + | Chr2:16880730-16880749 | MsG0280007539.01.T01:CDS | 45.0% | |
| CACTAGAGATAGCCATGGTA+AGG | + | Chr2:16882569-16882588 | MsG0280007539.01.T01:CDS | 45.0% | |
| CAGTTGTGGCTGTATTGTCA+GGG | + | Chr2:16882171-16882190 | MsG0280007539.01.T01:intron | 45.0% | |
| CATCGCAAATGGAAGAATCC+AGG | + | Chr2:16881480-16881499 | MsG0280007539.01.T01:CDS | 45.0% | |
| CATTTGCGATGCTGAACTTC+CGG | - | Chr2:16881471-16881490 | None:intergenic | 45.0% | |
| CCCTTATCACAGGTAAAGGA+AGG | + | Chr2:16880916-16880935 | MsG0280007539.01.T01:intron | 45.0% | |
| CCTTGCCACAACTTGAAGAT+AGG | - | Chr2:16881828-16881847 | None:intergenic | 45.0% | |
| CTTACCATGGCTATCTCTAG+TGG | - | Chr2:16882571-16882590 | None:intergenic | 45.0% | |
| GAAACTGAACCTCTATCTGC+AGG | - | Chr2:16881548-16881567 | None:intergenic | 45.0% | |
| GAGCTTAATGATATGCCTGG+TGG | + | Chr2:16880604-16880623 | MsG0280007539.01.T01:CDS | 45.0% | |
| GCCTTCCTTTACCTGTGATA+AGG | - | Chr2:16880920-16880939 | None:intergenic | 45.0% | |
| GGCACTTCATAAGAGACAGA+TGG | + | Chr2:16881175-16881194 | MsG0280007539.01.T01:intron | 45.0% | |
| GTTCTTCCACCACAGCTAAT+TGG | + | Chr2:16881386-16881405 | MsG0280007539.01.T01:CDS | 45.0% | |
| GTTGAGAGGGGAAACTTTGT+AGG | + | Chr2:16880742-16880761 | MsG0280007539.01.T01:CDS | 45.0% | |
| TCAAAAGCTTCTGATCCACC+AGG | - | Chr2:16880622-16880641 | None:intergenic | 45.0% | |
| TGCTCTAATCTGCCAATAGC+TGG | - | Chr2:16881899-16881918 | None:intergenic | 45.0% | |
| TTCTCTACTCTCAGCAAGAG+AGG | - | Chr2:16882649-16882668 | None:intergenic | 45.0% | |
| ! | GCTGAAAGTGTACCAGCTAT+TGG | + | Chr2:16881884-16881903 | MsG0280007539.01.T01:CDS | 45.0% |
| !! | AAGAATCTACCCTGGTTCTG+TGG | + | Chr2:16881748-16881767 | MsG0280007539.01.T01:CDS | 45.0% |
| !! | CCTATCTTCAAGTTGTGGCA+AGG | + | Chr2:16881825-16881844 | MsG0280007539.01.T01:CDS | 45.0% |
| AGCCATGGTAAGGGATCTCT+TGG | + | Chr2:16882579-16882598 | MsG0280007539.01.T01:CDS | 50.0% | |
| CCAAGATTCTCAGACCACTC+TGG | - | Chr2:16880850-16880869 | None:intergenic | 50.0% | |
| CCACTCTGGTAACTTCTCAG+TGG | - | Chr2:16880836-16880855 | None:intergenic | 50.0% | |
| CCACTGAGAAGTTACCAGAG+TGG | + | Chr2:16880833-16880852 | MsG0280007539.01.T01:CDS | 50.0% | |
| CCAGAGTGGTCTGAGAATCT+TGG | + | Chr2:16880847-16880866 | MsG0280007539.01.T01:CDS | 50.0% | |
| CGGAAGTTCAGCATCGCAAA+TGG | + | Chr2:16881469-16881488 | MsG0280007539.01.T01:CDS | 50.0% | |
| GCACTTCAGGGGACAATCTT+TGG | - | Chr2:16882401-16882420 | None:intergenic | 50.0% | |
| GCAGTTGTGGCTGTATTGTC+AGG | + | Chr2:16882170-16882189 | MsG0280007539.01.T01:intron | 50.0% | |
| GCTTCACCAATTAGCTGTGG+TGG | - | Chr2:16881395-16881414 | None:intergenic | 50.0% | |
| TCCAAGTTCACCATGCTTCC+TGG | - | Chr2:16882765-16882784 | None:intergenic | 50.0% | |
| TCCTCAGTCCACCAATCCTT+TGG | - | Chr2:16881305-16881324 | None:intergenic | 50.0% | |
| TCCTGTTGTCCACAGAACCA+GGG | - | Chr2:16881760-16881779 | None:intergenic | 50.0% | |
| TCTACACGGAACAAGCTACC+AGG | + | Chr2:16880176-16880195 | MsG0280007539.01.T01:CDS | 50.0% | |
| TTCCTGTTGTCCACAGAACC+AGG | - | Chr2:16881761-16881780 | None:intergenic | 50.0% | |
| ! | TCCAGGAAGCATGGTGAACT+TGG | + | Chr2:16882761-16882780 | MsG0280007539.01.T01:CDS | 50.0% |
| !! | CGGAAAAGAAGCGCTTGTGT+GGG | + | Chr2:16882364-16882383 | MsG0280007539.01.T01:CDS | 50.0% |
| !! | TCCAAAGGATTGGTGGACTG+AGG | + | Chr2:16881301-16881320 | MsG0280007539.01.T01:CDS | 50.0% |
| AGTGGCGTGCAACGTTGCAA+TGG | - | Chr2:16880818-16880837 | None:intergenic | 55.0% | |
| CCATGGCTATCTCTAGTGGC+AGG | - | Chr2:16882567-16882586 | None:intergenic | 55.0% | |
| CCTGCCACTAGAGATAGCCA+TGG | + | Chr2:16882564-16882583 | MsG0280007539.01.T01:CDS | 55.0% | |
| GCATTCGGACTTGAGCAAGG+CGG | + | Chr2:16882344-16882363 | MsG0280007539.01.T01:CDS | 55.0% | |
| GGCCAAGAGATCCCTTACCA+TGG | - | Chr2:16882584-16882603 | None:intergenic | 55.0% | |
| GGTGCATTCGGACTTGAGCA+AGG | + | Chr2:16882341-16882360 | MsG0280007539.01.T01:intron | 55.0% | |
| GTTGTAACCGGGCCTAGTGT+AGG | - | Chr2:16881261-16881280 | None:intergenic | 55.0% | |
| TCCTACACCTACACTAGGCC+CGG | + | Chr2:16881251-16881270 | MsG0280007539.01.T01:CDS | 55.0% | |
| !! | ACCCTGGTTCTGTGGACAAC+AGG | + | Chr2:16881756-16881775 | MsG0280007539.01.T01:CDS | 55.0% |
| !! | GCGGAAAAGAAGCGCTTGTG+TGG | + | Chr2:16882363-16882382 | MsG0280007539.01.T01:CDS | 55.0% |
| !! | GGGATCTCTTGGCCTTGACA+AGG | + | Chr2:16882590-16882609 | MsG0280007539.01.T01:CDS | 55.0% |
| ACCGGGCCTAGTGTAGGTGT+AGG | - | Chr2:16881255-16881274 | None:intergenic | 60.0% | |
| ACGGTCTGCGACTGCAGTTG+TGG | + | Chr2:16882157-16882176 | MsG0280007539.01.T01:intron | 60.0% | |
| ACAGCGTGCGCACGCACTTC+AGG | - | Chr2:16882414-16882433 | None:intergenic | 65.0% | |
| AGCGTGCGCACGCACTTCAG+GGG | - | Chr2:16882412-16882431 | None:intergenic | 65.0% | |
| CAGCGTGCGCACGCACTTCA+GGG | - | Chr2:16882413-16882432 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 16880139 | 16882854 | 16880139 | ID=MsG0280007539.01;Name=MsG0280007539.01 |
| Chr2 | mRNA | 16880139 | 16882854 | 16880139 | ID=MsG0280007539.01.T01;Parent=MsG0280007539.01;Name=MsG0280007539.01.T01;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|1|1|5|0|584 |
| Chr2 | exon | 16880139 | 16880197 | 16880139 | ID=MsG0280007539.01.T01:exon:3603;Parent=MsG0280007539.01.T01 |
| Chr2 | exon | 16880369 | 16880438 | 16880369 | ID=MsG0280007539.01.T01:exon:3604;Parent=MsG0280007539.01.T01 |
| Chr2 | exon | 16880529 | 16880927 | 16880529 | ID=MsG0280007539.01.T01:exon:3605;Parent=MsG0280007539.01.T01 |
| Chr2 | exon | 16881242 | 16881955 | 16881242 | ID=MsG0280007539.01.T01:exon:3606;Parent=MsG0280007539.01.T01 |
| Chr2 | exon | 16882342 | 16882854 | 16882342 | ID=MsG0280007539.01.T01:exon:3607;Parent=MsG0280007539.01.T01 |
| Chr2 | CDS | 16880139 | 16880197 | 16880139 | ID=MsG0280007539.01.T01:cds;Parent=MsG0280007539.01.T01 |
| Chr2 | CDS | 16880369 | 16880438 | 16880369 | ID=MsG0280007539.01.T01:cds;Parent=MsG0280007539.01.T01 |
| Chr2 | CDS | 16880529 | 16880927 | 16880529 | ID=MsG0280007539.01.T01:cds;Parent=MsG0280007539.01.T01 |
| Chr2 | CDS | 16881242 | 16881955 | 16881242 | ID=MsG0280007539.01.T01:cds;Parent=MsG0280007539.01.T01 |
| Chr2 | CDS | 16882342 | 16882854 | 16882342 | ID=MsG0280007539.01.T01:cds;Parent=MsG0280007539.01.T01 |
| Gene Sequence |
| Protein sequence |
