AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007806.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007806.01.T01 MTR_2g032710 96.930 456 8 1 1 456 14 463 0.0 912
MsG0280007806.01.T01 MTR_4g094715 73.961 457 108 2 1 456 15 461 0.0 701
MsG0280007806.01.T01 MTR_1g086390 63.077 390 142 1 59 446 80 469 0.0 547
MsG0280007806.01.T01 MTR_7g110050 60.000 425 160 4 32 454 46 462 0.0 538
MsG0280007806.01.T01 MTR_5g034090 46.608 457 204 9 18 444 77 523 2.94e-132 392
MsG0280007806.01.T01 MTR_8g065010 47.552 429 189 7 41 443 91 509 4.67e-130 386
MsG0280007806.01.T01 MTR_6g005630 46.512 387 189 6 60 445 45 414 4.39e-119 355
MsG0280007806.01.T01 MTR_5g033680 41.584 404 217 8 43 441 50 439 1.21e-106 325
MsG0280007806.01.T01 MTR_6g005630 43.411 387 178 6 60 445 45 391 3.79e-105 318
MsG0280007806.01.T01 MTR_8g065030 38.406 414 235 7 48 452 53 455 4.00e-95 295
MsG0280007806.01.T01 MTR_2g103410 39.842 379 215 7 60 435 59 427 8.63e-89 278
MsG0280007806.01.T01 MTR_1g052315 43.333 360 185 10 54 407 57 403 9.12e-88 275
MsG0280007806.01.T01 MTR_5g034090 46.131 336 144 7 18 324 77 404 4.02e-87 272
MsG0280007806.01.T01 MTR_7g091850 41.620 358 196 5 59 413 75 422 5.71e-86 271
MsG0280007806.01.T01 MTR_7g091840 41.018 334 183 5 49 377 54 378 5.98e-81 255
MsG0280007806.01.T01 MTR_2g060350 39.394 363 205 7 54 412 68 419 7.89e-81 257
MsG0280007806.01.T01 MTR_6g028080 36.318 402 219 10 54 438 16 397 4.18e-74 238
MsG0280007806.01.T01 MTR_2g103650 34.545 385 240 7 60 440 28 404 4.79e-73 236
MsG0280007806.01.T01 MTR_1g012390 37.018 389 226 9 56 440 24 397 4.89e-72 233
MsG0280007806.01.T01 MTR_3g054320 35.623 393 225 10 60 446 30 400 2.58e-69 226
MsG0280007806.01.T01 MTR_3g030540 38.292 363 200 8 61 417 71 415 6.57e-69 226
MsG0280007806.01.T01 MTR_3g084380 34.916 358 213 6 60 412 21 363 7.67e-67 219
MsG0280007806.01.T01 MTR_2g049400 35.142 387 234 7 53 438 21 391 2.38e-66 218
MsG0280007806.01.T01 MTR_2g058670 35.227 352 216 7 59 407 24 366 8.37e-66 217
MsG0280007806.01.T01 MTR_8g010080 35.770 383 217 10 59 438 30 386 1.29e-64 213
MsG0280007806.01.T01 MTR_2g058640 36.261 353 211 8 59 407 24 366 1.37e-64 214
MsG0280007806.01.T01 MTR_4g084050 34.795 365 211 8 60 413 23 371 1.53e-64 213
MsG0280007806.01.T01 MTR_8g010070 34.536 388 225 11 57 440 28 390 7.53e-64 211
MsG0280007806.01.T01 MTR_8g010040 35.770 383 214 9 60 437 32 387 8.56e-64 211
MsG0280007806.01.T01 MTR_2g058840 34.540 359 207 8 59 407 24 364 1.01e-63 212
MsG0280007806.01.T01 MTR_3g438050 34.232 371 225 7 59 424 26 382 1.14e-63 211
MsG0280007806.01.T01 MTR_3g084360 34.540 359 215 8 60 413 24 367 3.67e-63 209
MsG0280007806.01.T01 MTR_1g088160 35.372 376 215 13 59 423 34 392 1.30e-62 208
MsG0280007806.01.T01 MTR_5g097860 38.037 326 185 7 59 379 24 337 1.78e-62 206
MsG0280007806.01.T01 MTR_5g043350 33.846 390 233 10 60 442 29 400 3.23e-62 207
MsG0280007806.01.T01 MTR_0157s0060 34.817 382 221 8 65 440 3 362 3.69e-62 206
MsG0280007806.01.T01 MTR_4g034020 34.817 382 221 8 65 440 3 362 3.69e-62 206
MsG0280007806.01.T01 MTR_8g008765 35.780 327 185 5 56 379 27 331 8.45e-62 204
MsG0280007806.01.T01 MTR_8g010110 33.247 385 229 8 57 438 28 387 2.29e-61 205
MsG0280007806.01.T01 MTR_4g083660 34.615 390 234 12 53 438 2 374 6.37e-61 203
MsG0280007806.01.T01 MTR_8g010090 33.506 385 228 9 57 438 28 387 3.50e-60 202
MsG0280007806.01.T01 MTR_7g035415 36.190 315 177 7 59 368 39 334 7.59e-60 199
MsG0280007806.01.T01 MTR_7g113910 35.772 369 150 8 59 425 56 339 1.11e-59 200
MsG0280007806.01.T01 MTR_2g435640 34.262 359 220 7 54 407 47 394 1.74e-58 198
MsG0280007806.01.T01 MTR_2g103410 37.453 267 157 4 60 324 59 317 3.85e-58 194
MsG0280007806.01.T01 MTR_8g009810 35.196 358 213 9 60 413 35 377 4.33e-57 194
MsG0280007806.01.T01 MTR_8g030930 33.983 359 215 9 59 409 26 370 8.92e-57 193
MsG0280007806.01.T01 MTR_1g013730 32.984 382 225 9 60 438 27 380 2.86e-55 189
MsG0280007806.01.T01 MTR_1g013740 32.552 384 228 9 60 440 35 390 3.23e-54 186
MsG0280007806.01.T01 MTR_4g120320 32.642 386 243 9 55 435 47 420 7.51e-54 186
MsG0280007806.01.T01 MTR_2g029170 35.000 340 202 10 102 438 38 361 4.68e-53 182
MsG0280007806.01.T01 MTR_8g010050 30.570 386 205 11 57 438 28 354 2.76e-52 180
MsG0280007806.01.T01 MTR_8g008700 33.746 323 167 8 118 438 13 290 1.16e-47 166
MsG0280007806.01.T01 MTR_8g077320 29.949 394 199 9 59 437 32 363 3.02e-47 167
MsG0280007806.01.T01 MTR_5g063430 31.169 308 186 8 59 359 24 312 1.84e-41 150
MsG0280007806.01.T01 MTR_8g031180 36.538 208 122 3 207 408 70 273 5.87e-39 142
MsG0280007806.01.T01 MTR_2g100040 31.129 363 182 13 59 415 24 324 1.51e-38 143
MsG0280007806.01.T01 MTR_4g124980 26.128 421 241 14 48 426 62 454 9.82e-22 98.2
MsG0280007806.01.T01 MTR_2g042740 25.722 381 236 12 58 407 54 418 6.01e-21 95.5
MsG0280007806.01.T01 MTR_3g449590 23.844 411 269 10 62 443 49 444 2.24e-17 84.7
MsG0280007806.01.T01 MTR_5g090160 25.879 313 191 9 65 349 49 348 3.13e-16 80.9
MsG0280007806.01.T01 MTR_1g100040 26.214 309 185 11 65 344 61 355 5.81e-15 77.4
MsG0280007806.01.T01 MTR_8g098840 24.571 350 210 13 62 376 46 376 6.48e-15 77.0
MsG0280007806.01.T01 MTR_2g435340 25.526 333 195 12 50 348 27 340 6.91e-15 77.0
MsG0280007806.01.T01 MTR_1g100050 30.000 230 131 7 65 276 55 272 1.00e-14 76.6
MsG0280007806.01.T01 MTR_7g088550 25.649 308 186 10 65 343 55 348 4.67e-14 74.3
MsG0280007806.01.T01 MTR_1g099850 25.243 309 188 10 65 344 60 354 1.34e-13 73.2
MsG0280007806.01.T01 MTR_1g100060 27.826 230 136 6 65 276 98 315 2.27e-13 72.4
MsG0280007806.01.T01 MTR_7g110710 26.006 323 192 10 62 353 45 351 2.67e-13 72.0
MsG0280007806.01.T01 MTR_7g110710 26.006 323 192 10 62 353 45 351 3.49e-13 71.6
MsG0280007806.01.T01 MTR_3g096330 29.000 200 116 6 158 344 189 375 5.48e-13 71.6
MsG0280007806.01.T01 MTR_8g028725 24.058 345 218 11 62 376 57 387 7.11e-13 70.9
MsG0280007806.01.T01 MTR_7g078680 23.614 415 265 12 65 446 60 455 1.37e-12 70.1
MsG0280007806.01.T01 MTR_1g086030 25.155 322 195 10 62 353 84 389 2.73e-12 68.9
MsG0280007806.01.T01 MTR_2g435340 27.230 213 132 6 148 348 74 275 9.26e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007806.01.T01 AT1G48100 71.269 449 122 3 4 448 21 466 0.0 658
MsG0280007806.01.T01 AT1G02460 62.148 391 143 3 59 444 88 478 0.0 519
MsG0280007806.01.T01 AT4G01890 56.281 398 169 2 48 440 53 450 3.63e-170 486
MsG0280007806.01.T01 AT1G56710 54.612 412 179 4 39 444 24 433 4.95e-168 480
MsG0280007806.01.T01 AT1G60590 45.499 411 191 6 60 443 123 527 4.84e-121 364
MsG0280007806.01.T01 AT1G10640 45.477 409 193 6 59 443 118 520 8.01e-120 360
MsG0280007806.01.T01 AT5G14650 45.679 405 204 6 53 454 44 435 5.60e-118 352
MsG0280007806.01.T01 AT3G26610 41.176 442 233 8 7 440 27 449 1.71e-107 327
MsG0280007806.01.T01 AT1G70500 41.162 396 220 6 59 452 66 450 5.81e-100 307
MsG0280007806.01.T01 AT1G80170 41.623 382 211 6 56 434 49 421 1.80e-99 305
MsG0280007806.01.T01 AT1G23460 41.927 384 206 7 59 438 42 412 3.73e-96 296
MsG0280007806.01.T01 AT1G23460 41.927 384 206 7 59 438 66 436 5.38e-96 297
MsG0280007806.01.T01 AT3G57510 41.714 350 189 6 62 407 70 408 2.03e-86 271
MsG0280007806.01.T01 AT2G41850 41.143 350 191 6 62 407 70 408 1.80e-85 269
MsG0280007806.01.T01 AT3G07970 39.257 377 211 9 51 423 64 426 5.28e-82 260
MsG0280007806.01.T01 AT5G14650 43.590 273 142 3 53 324 44 305 1.33e-72 231
MsG0280007806.01.T01 AT3G15720 37.984 387 213 10 60 439 23 389 6.16e-71 232
MsG0280007806.01.T01 AT3G15720 37.984 387 213 10 60 439 24 390 7.41e-71 231
MsG0280007806.01.T01 AT1G80140 36.286 350 205 6 92 438 2 336 8.33e-71 228
MsG0280007806.01.T01 AT4G35670 34.551 356 215 6 60 412 24 364 1.73e-69 226
MsG0280007806.01.T01 AT3G15720 37.984 387 210 11 60 439 23 386 2.49e-68 225
MsG0280007806.01.T01 AT2G43880 35.714 378 221 9 60 433 31 390 3.37e-66 218
MsG0280007806.01.T01 AT2G43870 37.892 351 201 7 60 407 21 357 5.90e-66 217
MsG0280007806.01.T01 AT1G80170 40.590 271 151 4 56 324 49 311 1.06e-65 214
MsG0280007806.01.T01 AT5G44840 33.067 375 225 8 59 426 23 378 1.50e-65 216
MsG0280007806.01.T01 AT1G05660 33.854 384 236 8 59 440 27 394 4.79e-65 214
MsG0280007806.01.T01 AT2G43890 35.638 376 224 11 60 433 29 388 2.70e-64 213
MsG0280007806.01.T01 AT1G05650 33.590 390 241 8 53 440 21 394 6.66e-64 211
MsG0280007806.01.T01 AT1G78400 35.417 384 232 6 59 439 34 404 7.38e-64 212
MsG0280007806.01.T01 AT1G65570 36.735 392 226 12 52 438 23 397 1.17e-63 211
MsG0280007806.01.T01 AT3G59850 36.827 353 203 10 60 407 23 360 1.94e-62 207
MsG0280007806.01.T01 AT3G59850 36.827 353 203 10 60 407 67 404 4.15e-62 208
MsG0280007806.01.T01 AT5G27530 33.889 360 208 7 59 413 52 386 4.74e-62 209
MsG0280007806.01.T01 AT1G17150 36.053 380 226 8 59 434 32 398 1.51e-61 206
MsG0280007806.01.T01 AT2G33160 36.170 376 219 9 40 407 11 373 4.69e-61 211
MsG0280007806.01.T01 AT1G02790 36.158 354 199 9 59 407 51 382 6.15e-61 204
MsG0280007806.01.T01 AT2G43860 35.844 385 226 12 60 440 33 400 9.04e-60 201
MsG0280007806.01.T01 AT5G48140 34.911 338 203 7 73 407 34 357 1.45e-59 200
MsG0280007806.01.T01 AT3G07830 36.686 338 198 7 73 407 34 358 2.08e-59 200
MsG0280007806.01.T01 AT3G07840 35.613 351 209 8 65 412 26 362 2.87e-59 199
MsG0280007806.01.T01 AT3G15720 37.209 344 190 9 102 439 3 326 2.25e-58 197
MsG0280007806.01.T01 AT4G13760 33.989 356 215 9 59 407 30 372 8.03e-57 193
MsG0280007806.01.T01 AT3G07820 35.860 343 203 8 73 412 33 361 1.35e-56 192
MsG0280007806.01.T01 AT1G43080 34.270 356 214 9 59 407 30 372 1.86e-56 192
MsG0280007806.01.T01 AT3G14040 37.396 361 208 8 52 408 63 409 3.65e-56 192
MsG0280007806.01.T01 AT1G43090 34.551 356 213 9 59 407 30 372 6.61e-56 192
MsG0280007806.01.T01 AT5G17200 31.785 409 233 10 56 440 35 421 8.00e-56 191
MsG0280007806.01.T01 AT2G43880 37.162 296 172 5 60 354 31 313 1.33e-55 188
MsG0280007806.01.T01 AT5G44830 31.765 340 202 6 90 426 7 319 1.63e-55 187
MsG0280007806.01.T01 AT5G39910 30.402 398 197 11 59 439 35 369 2.29e-55 189
MsG0280007806.01.T01 AT4G18180 35.574 357 209 9 59 407 38 381 2.85e-55 190
MsG0280007806.01.T01 AT4G32380 32.703 370 224 7 72 433 39 391 3.92e-55 190
MsG0280007806.01.T01 AT1G43100 34.454 357 212 10 59 407 30 372 2.46e-54 188
MsG0280007806.01.T01 AT3G07850 37.119 361 208 9 52 408 63 408 1.10e-53 186
MsG0280007806.01.T01 AT2G15460 34.358 358 211 11 59 407 30 372 1.59e-53 184
MsG0280007806.01.T01 AT2G26620 33.898 354 216 9 59 407 30 370 2.63e-53 184
MsG0280007806.01.T01 AT2G15450 34.078 358 212 11 59 407 30 372 4.85e-53 183
MsG0280007806.01.T01 AT2G40310 33.613 357 213 10 60 407 31 372 1.17e-52 182
MsG0280007806.01.T01 AT2G15470 33.799 358 213 11 59 407 30 372 1.69e-51 179
MsG0280007806.01.T01 AT4G32375 36.655 281 151 6 134 407 5 265 1.75e-51 180
MsG0280007806.01.T01 AT4G32370 35.836 293 166 6 74 358 49 327 3.65e-49 171
MsG0280007806.01.T01 AT4G35670 32.841 271 168 3 142 412 1 257 7.22e-49 169
MsG0280007806.01.T01 AT4G32380 35.688 269 152 5 72 335 39 291 6.81e-46 164
MsG0280007806.01.T01 AT3G42950 28.103 427 257 18 58 451 64 473 7.91e-22 98.2
MsG0280007806.01.T01 AT5G41870 27.103 321 189 9 59 349 44 349 5.57e-21 95.5
MsG0280007806.01.T01 AT1G19170 24.672 381 241 11 58 407 85 450 4.27e-20 93.2
MsG0280007806.01.T01 AT4G33440 26.168 321 190 10 55 344 67 371 8.23e-18 86.3
MsG0280007806.01.T01 AT3G62110 26.462 325 188 12 62 353 45 351 4.47e-17 84.0
MsG0280007806.01.T01 AT3G62110 26.462 325 188 12 62 353 45 351 4.47e-17 84.0
MsG0280007806.01.T01 AT4G23820 26.708 322 182 12 62 349 43 344 1.54e-16 82.0
MsG0280007806.01.T01 AT2G23900 23.980 392 242 14 65 422 61 430 7.51e-15 77.0
MsG0280007806.01.T01 AT3G48950 22.899 345 217 10 65 376 50 378 1.25e-14 76.3
MsG0280007806.01.T01 AT4G23500 24.096 415 265 13 65 447 73 469 2.65e-12 68.9
MsG0280007806.01.T01 AT3G06770 26.266 316 188 12 62 347 46 346 7.85e-11 64.3
MsG0280007806.01.T01 AT3G06770 26.266 316 188 12 62 347 45 345 7.90e-11 64.3

Find 108 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCTCCACTTGATTGTTTA+AGG 0.078821 2:-20848957 MsG0280007806.01.T01:CDS
CTTGATCAAATGACTCTAAA+TGG 0.174861 2:-20851555 MsG0280007806.01.T01:CDS
GGAGATTCTCCAGGATTATT+TGG 0.184472 2:+20852257 None:intergenic
GAATATGAATGCAATAATTA+AGG 0.201144 2:-20848901 None:intergenic
GGTACCTTCCTTCCACATTA+TGG 0.224070 2:+20852384 None:intergenic
GATAACTCCACAACCGTTTC+AGG 0.228355 2:+20848925 None:intergenic
GTTCTTCATGAGCTCAAATT+TGG 0.241900 2:-20851214 MsG0280007806.01.T01:CDS
CCATAAGCATTCCAACAAAA+AGG 0.243640 2:+20849000 None:intergenic
TCTCCAGGATTATTTGGATA+TGG 0.275950 2:+20852263 None:intergenic
GCAGCTTGTGCGGTTGATTC+AGG 0.284027 2:-20852146 MsG0280007806.01.T01:CDS
GGATTATTTGGATATGGATA+TGG 0.286489 2:+20852269 None:intergenic
GTGCTCCTACCCACGGAATT+AGG 0.301522 2:-20850853 MsG0280007806.01.T01:intron
CAATTCCATGTGAAATTTGA+TGG 0.330222 2:-20851159 MsG0280007806.01.T01:CDS
TCTGCCTCAGGCCAACAATT+TGG 0.335193 2:+20851609 None:intergenic
ATCTTCCTTGCAAACCTCAT+AGG 0.364129 2:-20851494 MsG0280007806.01.T01:CDS
AGTTTCTTACATTCTCCATT+TGG 0.366739 2:+20849238 None:intergenic
TATCTTGTTTATAGATGATA+AGG 0.370877 2:-20851236 MsG0280007806.01.T01:intron
TCCTCCACTTGATTGTTTAA+GGG 0.382641 2:-20848956 MsG0280007806.01.T01:CDS
TTCGACAGCATTGGAAGCCT+TGG 0.386798 2:-20849396 MsG0280007806.01.T01:intron
GGCCAACAATTTGGTCCATC+TGG 0.390506 2:+20851618 None:intergenic
ACAGATTGATGGTACTTTGA+TGG 0.391007 2:-20851643 MsG0280007806.01.T01:intron
AGCTCAAATTTGGTGTTAAG+AGG 0.391670 2:-20851204 MsG0280007806.01.T01:CDS
TGACTGAGTTGCGGACTGTT+AGG 0.400859 2:+20849343 None:intergenic
ATTATTATTATTACCCTATG+AGG 0.401164 2:+20851480 None:intergenic
GGTGATGATTGCATTTCAAT+TGG 0.404860 2:-20850914 MsG0280007806.01.T01:CDS
TTATTTACCATTGCTTATCA+AGG 0.419053 2:+20851029 None:intergenic
AAGTGGATTCCATCAGTATT+GGG 0.420148 2:+20851084 None:intergenic
TCAGTATTGGGACTAAGTTT+AGG 0.423481 2:+20851096 None:intergenic
ACTAAGTTTAGGTGCAGAAA+TGG 0.423584 2:+20851107 None:intergenic
AATATGAATGCAATAATTAA+GGG 0.424968 2:-20848900 None:intergenic
CATCCCTTGTGTTTCCTAAG+TGG 0.427078 2:+20851067 None:intergenic
GGAGGTACAGGATCAGTAAC+AGG 0.441303 2:-20849279 MsG0280007806.01.T01:CDS
TAAGTGGATTCCATCAGTAT+TGG 0.443227 2:+20851083 None:intergenic
ACTAGGAGATGTAGGAGGAT+TGG 0.444391 2:+20852304 None:intergenic
TTACATATACTGCTGATGTT+TGG 0.447172 2:+20849169 None:intergenic
AACATTTGACAACATCCAAA+TGG 0.452717 2:-20849253 MsG0280007806.01.T01:CDS
TCAAATTTCACATGGAATTG+AGG 0.453281 2:+20851162 None:intergenic
TTGATCAAATGACTCTAAAT+GGG 0.457341 2:-20851554 MsG0280007806.01.T01:CDS
GATTGCATTTCAATTGGTCC+TGG 0.464171 2:-20850908 MsG0280007806.01.T01:CDS
GTAAGATCATTTGGAGCAGT+TGG 0.464835 2:-20852215 MsG0280007806.01.T01:CDS
CACCAGATGGACCAAATTGT+TGG 0.467082 2:-20851620 MsG0280007806.01.T01:CDS
CTTACTTGAAATACCAGTCC+TGG 0.467508 2:+20852056 None:intergenic
GGATTGGAAGAAGGTGGTGA+AGG 0.469757 2:+20852320 None:intergenic
AAAACATGGCAAGGAGGTAC+AGG 0.486274 2:-20849291 MsG0280007806.01.T01:CDS
TTGAAATGTATACAGATTGA+TGG 0.493832 2:-20851654 MsG0280007806.01.T01:intron
TCACTACAAGCAAAGTGTAT+TGG 0.494006 2:+20849096 None:intergenic
TATCCATATCCAAATAATCC+TGG 0.495114 2:-20852266 MsG0280007806.01.T01:CDS
GGATATGGATATGGATCAGA+TGG 0.495462 2:+20852278 None:intergenic
TCAACTAATTCACCTTCATA+AGG 0.499997 2:+20849027 None:intergenic
AGGTGAGCCTGAAACGGTTG+TGG 0.500843 2:-20848932 MsG0280007806.01.T01:CDS
TGGTCCATGCAAACCAGGAC+TGG 0.506011 2:-20852069 MsG0280007806.01.T01:CDS
AATACCAGTCCTGGTTTGCA+TGG 0.514150 2:+20852065 None:intergenic
GATGTAGGAGGATTGGAAGA+AGG 0.516798 2:+20852311 None:intergenic
TCTTCCTTGCAAACCTCATA+GGG 0.518124 2:-20851493 MsG0280007806.01.T01:intron
GGTGAAGGGTCACTAGGTGC+TGG 0.521610 2:+20852335 None:intergenic
TAATCCTGGAGAATCTCCTT+CGG 0.522281 2:-20852252 MsG0280007806.01.T01:CDS
AATACTGATGGAATCCACTT+AGG 0.526638 2:-20851081 MsG0280007806.01.T01:CDS
CAAATGACTCTAAATGGGAC+AGG 0.527686 2:-20851549 MsG0280007806.01.T01:CDS
AAACTTAGTCCCAATACTGA+TGG 0.527825 2:-20851093 MsG0280007806.01.T01:CDS
CCACTTGATTGTTTAAGGGA+AGG 0.528218 2:-20848952 MsG0280007806.01.T01:CDS
GATGGAACACTAGGAGATGT+AGG 0.530462 2:+20852296 None:intergenic
AATGGGACAGGAATTATTGA+AGG 0.532465 2:-20851537 MsG0280007806.01.T01:CDS
GATTGGAAGAAGGTGGTGAA+GGG 0.533569 2:+20852321 None:intergenic
AAGGGAAGGTGAGCCTGAAA+CGG 0.547901 2:-20848938 MsG0280007806.01.T01:CDS
GTCTATAAAACACAAGCCAT+TGG 0.548487 2:+20851577 None:intergenic
TCATTTGGAGCAGTTGGAGA+TGG 0.548866 2:-20852209 MsG0280007806.01.T01:CDS
CTACAAGCAAAGTGTATTGG+AGG 0.549583 2:+20849099 None:intergenic
ACAGGAATTATTGAAGGCAA+TGG 0.554020 2:-20851531 MsG0280007806.01.T01:CDS
GAAGGTGGTGAAGGGTCACT+AGG 0.554808 2:+20852329 None:intergenic
GCTCAAATTTGGTGTTAAGA+GGG 0.555873 2:-20851203 MsG0280007806.01.T01:CDS
GTAGGAGGATTGGAAGAAGG+TGG 0.559194 2:+20852314 None:intergenic
TTAGGAAACACAAGGGATGT+TGG 0.561840 2:-20851063 MsG0280007806.01.T01:CDS
TATAATTCCTTGATAAGCAA+TGG 0.563522 2:-20851036 MsG0280007806.01.T01:intron
GTGAAATTTGATGGTTGTCA+AGG 0.563909 2:-20851150 MsG0280007806.01.T01:CDS
ATGTGACATACCTAATTCCG+TGG 0.569578 2:+20850843 None:intergenic
CAATCCGAAGGAGATTCTCC+AGG 0.577573 2:+20852248 None:intergenic
ACATCGAAAACGCAATCCGA+AGG 0.582946 2:+20852236 None:intergenic
TATGGATCAGATGGAACACT+AGG 0.584081 2:+20852287 None:intergenic
TCATCCATAATGTGGAAGGA+AGG 0.585473 2:-20852388 MsG0280007806.01.T01:CDS
GTTACTTGTGCTCCTACCCA+CGG 0.586560 2:-20850860 MsG0280007806.01.T01:CDS
ATTACCCTATGAGGTTTGCA+AGG 0.592983 2:+20851489 None:intergenic
CTAAGAATCAAAACATGGCA+AGG 0.597482 2:-20849300 MsG0280007806.01.T01:CDS
AGCATGGAAAGCAGCTTGTG+CGG 0.598818 2:-20852156 MsG0280007806.01.T01:CDS
AAGGCAATGGAGAACAATGG+TGG 0.608620 2:-20851518 MsG0280007806.01.T01:CDS
ACATTCACATCTGAACATCC+AGG 0.609157 2:+20850890 None:intergenic
CGTGGGAATTGTGTACTCCA+AGG 0.610752 2:+20849379 None:intergenic
TGTTCAGATGTGAATGTGGA+TGG 0.618209 2:-20850884 MsG0280007806.01.T01:CDS
GTCATAAAAGAATCAGACAA+TGG 0.619796 2:-20849324 MsG0280007806.01.T01:CDS
TCCCTTAAACAATCAAGTGG+AGG 0.624213 2:+20848955 None:intergenic
AGGCAATGGAGAACAATGGT+GGG 0.624461 2:-20851517 MsG0280007806.01.T01:CDS
GACAACCATCAAATTTCACA+TGG 0.633858 2:+20851154 None:intergenic
AGGCAGACAGTAAAAGCCAA+TGG 0.642020 2:-20851593 MsG0280007806.01.T01:CDS
CCTTCCCTTAAACAATCAAG+TGG 0.643008 2:+20848952 None:intergenic
GGTACTTTGATGGCACCAGA+TGG 0.645534 2:-20851633 MsG0280007806.01.T01:CDS
TGGACCAAATTGTTGGCCTG+AGG 0.650727 2:-20851613 MsG0280007806.01.T01:CDS
ACATACCTAATTCCGTGGGT+AGG 0.654879 2:+20850848 None:intergenic
GAATCCACTTAGGAAACACA+AGG 0.655820 2:-20851071 MsG0280007806.01.T01:CDS
TGGATGTTCAGATGTGAATG+TGG 0.656226 2:-20850888 MsG0280007806.01.T01:CDS
TAGGTTTGAGACACATGCGT+GGG 0.660709 2:+20849362 None:intergenic
TTGAAGGCAATGGAGAACAA+TGG 0.660810 2:-20851521 MsG0280007806.01.T01:CDS
TTAGGTTTGAGACACATGCG+TGG 0.673355 2:+20849361 None:intergenic
CTCACTGTAGGGCTAACACA+TGG 0.682946 2:+20851349 None:intergenic
CAGCTGCATTTAGAGCAGCA+TGG 0.685070 2:-20852172 MsG0280007806.01.T01:CDS
TGTGACATACCTAATTCCGT+GGG 0.685322 2:+20850844 None:intergenic
GGAACACTAGGAGATGTAGG+AGG 0.693701 2:+20852299 None:intergenic
ATGGACTAAGAATCAAAACA+TGG 0.703229 2:-20849305 MsG0280007806.01.T01:CDS
AGAATCAAAACATGGCAAGG+AGG 0.705826 2:-20849297 MsG0280007806.01.T01:CDS
AATCCACTTAGGAAACACAA+GGG 0.771508 2:-20851070 MsG0280007806.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATATATAAATAAATAA+TGG - Chr2:20850732-20850751 MsG0280007806.01.T01:intron 0.0%
!! CAATTAATTATGATTAATTT+AGG - Chr2:20850519-20850538 MsG0280007806.01.T01:intron 10.0%
!! TCATAAGAAAAAAAATTATA+AGG + Chr2:20850043-20850062 None:intergenic 10.0%
!!! AATATAGAAATTTTATTCTA+TGG - Chr2:20850319-20850338 MsG0280007806.01.T01:intron 10.0%
!!! AATTAAATTTTACATAATCA+TGG + Chr2:20849604-20849623 None:intergenic 10.0%
!!! ATGTTACATTTTTATTTAAT+AGG - Chr2:20850366-20850385 MsG0280007806.01.T01:intron 10.0%
!!! TTTTTTCTTCAAATTTATTT+TGG - Chr2:20851539-20851558 MsG0280007806.01.T01:CDS 10.0%
!!! TTTTTTTTTCAAGTTTATTT+TGG + Chr2:20851360-20851379 None:intergenic 10.0%
!! AACTTAATCTTAAAAACAAT+TGG + Chr2:20851191-20851210 None:intergenic 15.0%
!! TCATAAAATGATTACATAAT+TGG + Chr2:20851483-20851502 None:intergenic 15.0%
!!! ATCAAAGTTTATTATTTTAG+AGG - Chr2:20851066-20851085 MsG0280007806.01.T01:CDS 15.0%
!!! ATTTTAAAACAGTAATTTTC+AGG + Chr2:20849194-20849213 None:intergenic 15.0%
!!! TAAAACTGATTTTATATGTT+TGG - Chr2:20851091-20851110 MsG0280007806.01.T01:CDS 15.0%
!!! TCTGTTATTTTAGTTAAATT+GGG - Chr2:20850485-20850504 MsG0280007806.01.T01:intron 15.0%
!!! TTCTGTTATTTTAGTTAAAT+TGG - Chr2:20850484-20850503 MsG0280007806.01.T01:intron 15.0%
!! AACCCTAAATTAATTTCATT+TGG - Chr2:20851690-20851709 MsG0280007806.01.T01:intron 20.0%
!! ACCTTGTTAGTTAATTATAT+AGG + Chr2:20849628-20849647 None:intergenic 20.0%
!! ATTATTATTATTACCCTATG+AGG + Chr2:20849824-20849843 None:intergenic 20.0%
!! GTCCAAATGAAATTAATTTA+GGG + Chr2:20851695-20851714 None:intergenic 20.0%
!! TCCTATATAATTAACTAACA+AGG - Chr2:20849624-20849643 MsG0280007806.01.T01:intron 20.0%
!! TGTCCAAATGAAATTAATTT+AGG + Chr2:20851696-20851715 None:intergenic 20.0%
!!! ACATCTTCTTAGAATTATTT+TGG - Chr2:20851572-20851591 MsG0280007806.01.T01:CDS 20.0%
!!! CACATTTGTCTAAAATTTAA+AGG + Chr2:20849315-20849334 None:intergenic 20.0%
!!! CTTTAAATTTTAGACAAATG+TGG - Chr2:20849313-20849332 MsG0280007806.01.T01:CDS 20.0%
!!! TATCTTGTTTATAGATGATA+AGG - Chr2:20850065-20850084 MsG0280007806.01.T01:intron 20.0%
!!! TGACCAAATAAATTTGATTT+GGG - Chr2:20851808-20851827 MsG0280007806.01.T01:intron 20.0%
! AAAAAGAAACTGTGATGTAA+TGG + Chr2:20850002-20850021 None:intergenic 25.0%
! AGACCCAAATCAAATTTATT+TGG + Chr2:20851814-20851833 None:intergenic 25.0%
! ATCTCCTACAGAAAAATAAA+GGG - Chr2:20852160-20852179 MsG0280007806.01.T01:CDS 25.0%
! CACAGCTTAAATTAAAGTTT+CGG + Chr2:20849372-20849391 None:intergenic 25.0%
! GTGACCAAATAAATTTGATT+TGG - Chr2:20851807-20851826 MsG0280007806.01.T01:intron 25.0%
! TATAATTCCTTGATAAGCAA+TGG - Chr2:20850265-20850284 MsG0280007806.01.T01:intron 25.0%
! TATCTCCTACAGAAAAATAA+AGG - Chr2:20852159-20852178 MsG0280007806.01.T01:CDS 25.0%
! TTATTTACCATTGCTTATCA+AGG + Chr2:20850275-20850294 None:intergenic 25.0%
! TTGAAATGTATACAGATTGA+TGG - Chr2:20849647-20849666 MsG0280007806.01.T01:intron 25.0%
! TTGATCAAATGACTCTAAAT+GGG - Chr2:20849747-20849766 MsG0280007806.01.T01:intron 25.0%
!! ATTGAACTTTTACCTTATGA+AGG - Chr2:20852262-20852281 MsG0280007806.01.T01:CDS 25.0%
!! CTTTTGATAAACAGTAGAAT+TGG + Chr2:20852102-20852121 None:intergenic 25.0%
!! GTTTCTTGAATTTCCTTTTA+TGG - Chr2:20849271-20849290 MsG0280007806.01.T01:CDS 25.0%
!! TGAATATTTTACTCACTGTA+GGG + Chr2:20849966-20849985 None:intergenic 25.0%
!!! TTGCCTTTTGAAATGATTTT+TGG + Chr2:20850616-20850635 None:intergenic 25.0%
AAACTGTGATGTAATGGTTA+AGG + Chr2:20849996-20850015 None:intergenic 30.0%
AACATTTGACAACATCCAAA+TGG - Chr2:20852048-20852067 MsG0280007806.01.T01:intron 30.0%
ACTATCGTCACATTAATGAT+TGG + Chr2:20850872-20850891 None:intergenic 30.0%
AGTTTCTTACATTCTCCATT+TGG + Chr2:20852066-20852085 None:intergenic 30.0%
ATAAAAGTTTGCAGCGTAAT+TGG - Chr2:20849560-20849579 MsG0280007806.01.T01:intron 30.0%
ATATATACACCCAAATTCTG+TGG - Chr2:20850589-20850608 MsG0280007806.01.T01:intron 30.0%
ATCATGGTCATGTTAAATTG+CGG + Chr2:20849588-20849607 None:intergenic 30.0%
ATTATAGCTACATAGAAGCT+TGG + Chr2:20851864-20851883 None:intergenic 30.0%
CAATTCCATGTGAAATTTGA+TGG - Chr2:20850142-20850161 MsG0280007806.01.T01:intron 30.0%
CATAAGCATTCCAACAAAAA+GGG + Chr2:20852303-20852322 None:intergenic 30.0%
CTTGATCAAATGACTCTAAA+TGG - Chr2:20849746-20849765 MsG0280007806.01.T01:intron 30.0%
GACTATAGTACTTTAACAGT+TGG - Chr2:20850833-20850852 MsG0280007806.01.T01:intron 30.0%
GGATTATTTGGATATGGATA+TGG + Chr2:20849035-20849054 None:intergenic 30.0%
GGTCCAAAAATCATTTCAAA+AGG - Chr2:20850610-20850629 MsG0280007806.01.T01:intron 30.0%
GTCATAAAAGAATCAGACAA+TGG - Chr2:20851977-20851996 MsG0280007806.01.T01:intron 30.0%
TAAGCTACAAACTTAGTTGA+TGG - Chr2:20850555-20850574 MsG0280007806.01.T01:intron 30.0%
TAATCAGAGCAATTCTTACA+TGG + Chr2:20851841-20851860 None:intergenic 30.0%
TATCCATATCCAAATAATCC+TGG - Chr2:20849035-20849054 MsG0280007806.01.T01:CDS 30.0%
TCAAATTTCACATGGAATTG+AGG + Chr2:20850142-20850161 None:intergenic 30.0%
TCAACTAATTCACCTTCATA+AGG + Chr2:20852277-20852296 None:intergenic 30.0%
TCTGGTACTCAAAATTCTAT+AGG + Chr2:20851651-20851670 None:intergenic 30.0%
TTACATATACTGCTGATGTT+TGG + Chr2:20852135-20852154 None:intergenic 30.0%
TTCTAACTTCAAATGATCAC+AGG - Chr2:20850781-20850800 MsG0280007806.01.T01:intron 30.0%
! ATCACTTCTACTATCTTTTC+TGG - Chr2:20849212-20849231 MsG0280007806.01.T01:CDS 30.0%
! ATGGACTAAGAATCAAAACA+TGG - Chr2:20851996-20852015 MsG0280007806.01.T01:intron 30.0%
! ATTCTTTTATGACTGAGTTG+CGG + Chr2:20851970-20851989 None:intergenic 30.0%
! CGAAACTTTAATTTAAGCTG+TGG - Chr2:20849370-20849389 MsG0280007806.01.T01:CDS 30.0%
! CTGAATATTTTACTCACTGT+AGG + Chr2:20849967-20849986 None:intergenic 30.0%
! GATTCTTTTCATCCATAATG+TGG - Chr2:20848905-20848924 MsG0280007806.01.T01:CDS 30.0%
! GTGATCATTTGAAGTTAGAA+AGG + Chr2:20850781-20850800 None:intergenic 30.0%
! GTTTTCGATGTAAGATCATT+TGG - Chr2:20849077-20849096 MsG0280007806.01.T01:CDS 30.0%
! TGTTCAAGTTAGAATTTCTC+TGG + Chr2:20851669-20851688 None:intergenic 30.0%
! TTTTCATTTCAGAGTCCAAA+TGG - Chr2:20849913-20849932 MsG0280007806.01.T01:intron 30.0%
!! ATTTTTGGACCACAGAATTT+GGG + Chr2:20850601-20850620 None:intergenic 30.0%
!! TTTTCTTTGGTTTCTTGTGA+TGG + Chr2:20848941-20848960 None:intergenic 30.0%
!!! TGTACCCTTTATTTTTCTGT+AGG + Chr2:20852167-20852186 None:intergenic 30.0%
!!! TTACATGTGATGTGCTATTT+TGG - Chr2:20851623-20851642 MsG0280007806.01.T01:CDS 30.0%
AAACTTAGTCCCAATACTGA+TGG - Chr2:20850208-20850227 MsG0280007806.01.T01:intron 35.0%
AAGGTAATAGATTGCTACCT+AGG + Chr2:20850935-20850954 None:intergenic 35.0%
AATACTGATGGAATCCACTT+AGG - Chr2:20850220-20850239 MsG0280007806.01.T01:intron 35.0%
AATCCACTTAGGAAACACAA+GGG - Chr2:20850231-20850250 MsG0280007806.01.T01:intron 35.0%
AATGGGACAGGAATTATTGA+AGG - Chr2:20849764-20849783 MsG0280007806.01.T01:intron 35.0%
ACAGGAATTATTGAAGGCAA+TGG - Chr2:20849770-20849789 MsG0280007806.01.T01:intron 35.0%
ACTAAGTTTAGGTGCAGAAA+TGG + Chr2:20850197-20850216 None:intergenic 35.0%
AGCTTCAATTATGGTTGCAA+AGG - Chr2:20849343-20849362 MsG0280007806.01.T01:CDS 35.0%
AGGTAGCAATCTATTACCTT+GGG - Chr2:20850935-20850954 MsG0280007806.01.T01:intron 35.0%
AGTTATTACACTCACACTAC+AGG + Chr2:20850661-20850680 None:intergenic 35.0%
CCAAATGGAAAAACTGTATC+AGG - Chr2:20849928-20849947 MsG0280007806.01.T01:intron 35.0%
CCATAAGCATTCCAACAAAA+AGG + Chr2:20852304-20852323 None:intergenic 35.0%
CTAAGAATCAAAACATGGCA+AGG - Chr2:20852001-20852020 MsG0280007806.01.T01:intron 35.0%
GACAACCATCAAATTTCACA+TGG + Chr2:20850150-20850169 None:intergenic 35.0%
GGTGATGATTGCATTTCAAT+TGG - Chr2:20850387-20850406 MsG0280007806.01.T01:intron 35.0%
GTCTATAAAACACAAGCCAT+TGG + Chr2:20849727-20849746 None:intergenic 35.0%
GTGAGTGTAATAACTCTTGA+AGG - Chr2:20850666-20850685 MsG0280007806.01.T01:intron 35.0%
GTTCTTCATGAGCTCAAATT+TGG - Chr2:20850087-20850106 MsG0280007806.01.T01:intron 35.0%
TAGGTAGCAATCTATTACCT+TGG - Chr2:20850934-20850953 MsG0280007806.01.T01:intron 35.0%
TCACTACAAGCAAAGTGTAT+TGG + Chr2:20852208-20852227 None:intergenic 35.0%
TCCTCCACTTGATTGTTTAA+GGG - Chr2:20852345-20852364 MsG0280007806.01.T01:CDS 35.0%
TCTCCAGGATTATTTGGATA+TGG + Chr2:20849041-20849060 None:intergenic 35.0%
TTCCTCCACTTGATTGTTTA+AGG - Chr2:20852344-20852363 MsG0280007806.01.T01:CDS 35.0%
! AAGTGGATTCCATCAGTATT+GGG + Chr2:20850220-20850239 None:intergenic 35.0%
! ACAGATTGATGGTACTTTGA+TGG - Chr2:20849658-20849677 MsG0280007806.01.T01:intron 35.0%
! CCTGATACAGTTTTTCCATT+TGG + Chr2:20849931-20849950 None:intergenic 35.0%
! CCTTTTTGTTGGAATGCTTA+TGG - Chr2:20852301-20852320 MsG0280007806.01.T01:CDS 35.0%
! CGCTGCAAACTTTTATATTG+CGG + Chr2:20849556-20849575 None:intergenic 35.0%
! CTTTTCATCCATAATGTGGA+AGG - Chr2:20848909-20848928 MsG0280007806.01.T01:CDS 35.0%
! GTGAAATTTGATGGTTGTCA+AGG - Chr2:20850151-20850170 MsG0280007806.01.T01:intron 35.0%
! TAAGTGGATTCCATCAGTAT+TGG + Chr2:20850221-20850240 None:intergenic 35.0%
! TCAGTATTGGGACTAAGTTT+AGG + Chr2:20850208-20850227 None:intergenic 35.0%
!! AGCTCAAATTTGGTGTTAAG+AGG - Chr2:20850097-20850116 MsG0280007806.01.T01:intron 35.0%
!! GATTTTTGGACCACAGAATT+TGG + Chr2:20850602-20850621 None:intergenic 35.0%
!! GCTCAAATTTGGTGTTAAGA+GGG - Chr2:20850098-20850117 MsG0280007806.01.T01:intron 35.0%
!!! ACGATCGTGGTTTTAAATTG+TGG - Chr2:20849427-20849446 MsG0280007806.01.T01:intron 35.0%
!!! TACCTTGGGGACTAATTTTT+TGG - Chr2:20850949-20850968 MsG0280007806.01.T01:intron 35.0%
!!! TAGTTGATGACCCTTTTTGT+TGG - Chr2:20852290-20852309 MsG0280007806.01.T01:CDS 35.0%
AACGCAACTGTGACCATAAA+AGG + Chr2:20849287-20849306 None:intergenic 40.0%
ACATTCACATCTGAACATCC+AGG + Chr2:20850414-20850433 None:intergenic 40.0%
AGAATCAAAACATGGCAAGG+AGG - Chr2:20852004-20852023 MsG0280007806.01.T01:intron 40.0%
ATCTTCCTTGCAAACCTCAT+AGG - Chr2:20849807-20849826 MsG0280007806.01.T01:intron 40.0%
ATGTGACATACCTAATTCCG+TGG + Chr2:20850461-20850480 None:intergenic 40.0%
ATTACCCTATGAGGTTTGCA+AGG + Chr2:20849815-20849834 None:intergenic 40.0%
CAAATGACTCTAAATGGGAC+AGG - Chr2:20849752-20849771 MsG0280007806.01.T01:intron 40.0%
CCACTTGATTGTTTAAGGGA+AGG - Chr2:20852349-20852368 MsG0280007806.01.T01:CDS 40.0%
CCTTCCCTTAAACAATCAAG+TGG + Chr2:20852352-20852371 None:intergenic 40.0%
CTACAAGCAAAGTGTATTGG+AGG + Chr2:20852205-20852224 None:intergenic 40.0%
CTGTCGAAATCACATCAGTA+AGG + Chr2:20851893-20851912 None:intergenic 40.0%
CTTACTTGAAATACCAGTCC+TGG + Chr2:20849248-20849267 None:intergenic 40.0%
CTTCAAAATCCTTTACGCTG+CGG + Chr2:20849472-20849491 None:intergenic 40.0%
GAATCCACTTAGGAAACACA+AGG - Chr2:20850230-20850249 MsG0280007806.01.T01:intron 40.0%
GATTGCATTTCAATTGGTCC+TGG - Chr2:20850393-20850412 MsG0280007806.01.T01:intron 40.0%
GCACATCACATGTAACTTCT+AGG + Chr2:20851618-20851637 None:intergenic 40.0%
GGAGATTCTCCAGGATTATT+TGG + Chr2:20849047-20849066 None:intergenic 40.0%
GGATATGGATATGGATCAGA+TGG + Chr2:20849026-20849045 None:intergenic 40.0%
GGCTGATGTAGCTTCAATTA+TGG - Chr2:20849334-20849353 MsG0280007806.01.T01:CDS 40.0%
GGTAGCAATCTATTACCTTG+GGG - Chr2:20850936-20850955 MsG0280007806.01.T01:intron 40.0%
GTCCAAAAAATTAGTCCCCA+AGG + Chr2:20850954-20850973 None:intergenic 40.0%
TAATCCTGGAGAATCTCCTT+CGG - Chr2:20849049-20849068 MsG0280007806.01.T01:CDS 40.0%
TATGGATCAGATGGAACACT+AGG + Chr2:20849017-20849036 None:intergenic 40.0%
TCATCCATAATGTGGAAGGA+AGG - Chr2:20848913-20848932 MsG0280007806.01.T01:CDS 40.0%
TCCCTTAAACAATCAAGTGG+AGG + Chr2:20852349-20852368 None:intergenic 40.0%
TCTTCCTTGCAAACCTCATA+GGG - Chr2:20849808-20849827 MsG0280007806.01.T01:intron 40.0%
TGATGTGATTTCGACAGCAT+TGG - Chr2:20851896-20851915 MsG0280007806.01.T01:intron 40.0%
TGGATGTTCAGATGTGAATG+TGG - Chr2:20850413-20850432 MsG0280007806.01.T01:intron 40.0%
TGTGACATACCTAATTCCGT+GGG + Chr2:20850460-20850479 None:intergenic 40.0%
TGTGTACTTCTCATCAACTG+TGG + Chr2:20851285-20851304 None:intergenic 40.0%
TGTTCAGATGTGAATGTGGA+TGG - Chr2:20850417-20850436 MsG0280007806.01.T01:intron 40.0%
TTAGGAAACACAAGGGATGT+TGG - Chr2:20850238-20850257 MsG0280007806.01.T01:intron 40.0%
TTGAAGGCAATGGAGAACAA+TGG - Chr2:20849780-20849799 MsG0280007806.01.T01:intron 40.0%
! GATGAGAAGTACACACTTAG+TGG - Chr2:20851290-20851309 MsG0280007806.01.T01:intron 40.0%
! GCAATTTAGAATCACGATCG+TGG - Chr2:20849414-20849433 MsG0280007806.01.T01:intron 40.0%
! GTAAGATCATTTGGAGCAGT+TGG - Chr2:20849086-20849105 MsG0280007806.01.T01:CDS 40.0%
AAGGCAATGGAGAACAATGG+TGG - Chr2:20849783-20849802 MsG0280007806.01.T01:intron 45.0%
ACATACCTAATTCCGTGGGT+AGG + Chr2:20850456-20850475 None:intergenic 45.0%
ACATCGAAAACGCAATCCGA+AGG + Chr2:20849068-20849087 None:intergenic 45.0%
ACTAGGAGATGTAGGAGGAT+TGG + Chr2:20849000-20849019 None:intergenic 45.0%
AGGCAATGGAGAACAATGGT+GGG - Chr2:20849784-20849803 MsG0280007806.01.T01:intron 45.0%
AGGCAGACAGTAAAAGCCAA+TGG - Chr2:20849708-20849727 MsG0280007806.01.T01:intron 45.0%
ATAGATTGCTACCTAGGAGC+AGG + Chr2:20850929-20850948 None:intergenic 45.0%
CACCAGATGGACCAAATTGT+TGG - Chr2:20849681-20849700 MsG0280007806.01.T01:intron 45.0%
CATCCCTTGTGTTTCCTAAG+TGG + Chr2:20850237-20850256 None:intergenic 45.0%
GATAACTCCACAACCGTTTC+AGG + Chr2:20852379-20852398 None:intergenic 45.0%
GATGGAACACTAGGAGATGT+AGG + Chr2:20849008-20849027 None:intergenic 45.0%
GATGTAGGAGGATTGGAAGA+AGG + Chr2:20848993-20849012 None:intergenic 45.0%
GATTGGAAGAAGGTGGTGAA+GGG + Chr2:20848983-20849002 None:intergenic 45.0%
GGTACCTTCCTTCCACATTA+TGG + Chr2:20848920-20848939 None:intergenic 45.0%
GTGGTCTGCAACAGTAATAG+AGG - Chr2:20849446-20849465 MsG0280007806.01.T01:intron 45.0%
TAGATTGCTACCTAGGAGCA+GGG + Chr2:20850928-20850947 None:intergenic 45.0%
! AAAACATGGCAAGGAGGTAC+AGG - Chr2:20852010-20852029 MsG0280007806.01.T01:intron 45.0%
! AATACCAGTCCTGGTTTGCA+TGG + Chr2:20849239-20849258 None:intergenic 45.0%
! TAGGTTTGAGACACATGCGT+GGG + Chr2:20851942-20851961 None:intergenic 45.0%
! TCATTTGGAGCAGTTGGAGA+TGG - Chr2:20849092-20849111 MsG0280007806.01.T01:CDS 45.0%
! TTAGGTTTGAGACACATGCG+TGG + Chr2:20851943-20851962 None:intergenic 45.0%
!! GGTGCTGGAGAAGTTTTCTT+TGG + Chr2:20848954-20848973 None:intergenic 45.0%
!! TTTTCTGGTCCATGCAAACC+AGG - Chr2:20849227-20849246 MsG0280007806.01.T01:CDS 45.0%
AAGGGAAGGTGAGCCTGAAA+CGG - Chr2:20852363-20852382 MsG0280007806.01.T01:CDS 50.0%
AGATTGCTACCTAGGAGCAG+GGG + Chr2:20850927-20850946 None:intergenic 50.0%
AGCATGGAAAGCAGCTTGTG+CGG - Chr2:20849145-20849164 MsG0280007806.01.T01:CDS 50.0%
CAATCCGAAGGAGATTCTCC+AGG + Chr2:20849056-20849075 None:intergenic 50.0%
CGTGGGAATTGTGTACTCCA+AGG + Chr2:20851925-20851944 None:intergenic 50.0%
CTCACTGTAGGGCTAACACA+TGG + Chr2:20849955-20849974 None:intergenic 50.0%
GGAACACTAGGAGATGTAGG+AGG + Chr2:20849005-20849024 None:intergenic 50.0%
GGATTGGAAGAAGGTGGTGA+AGG + Chr2:20848984-20849003 None:intergenic 50.0%
GGCCAACAATTTGGTCCATC+TGG + Chr2:20849686-20849705 None:intergenic 50.0%
GTAGGAGGATTGGAAGAAGG+TGG + Chr2:20848990-20849009 None:intergenic 50.0%
GTTACTTGTGCTCCTACCCA+CGG - Chr2:20850441-20850460 MsG0280007806.01.T01:intron 50.0%
TAATAGAGGCCGCAGCGTAA+AGG - Chr2:20849460-20849479 MsG0280007806.01.T01:intron 50.0%
TCTGCCTCAGGCCAACAATT+TGG + Chr2:20849695-20849714 None:intergenic 50.0%
! CAGCTGCATTTAGAGCAGCA+TGG - Chr2:20849129-20849148 MsG0280007806.01.T01:CDS 50.0%
! GGAGGTACAGGATCAGTAAC+AGG - Chr2:20852022-20852041 MsG0280007806.01.T01:intron 50.0%
! GGTACTTTGATGGCACCAGA+TGG - Chr2:20849668-20849687 MsG0280007806.01.T01:intron 50.0%
! TGACTGAGTTGCGGACTGTT+AGG + Chr2:20851961-20851980 None:intergenic 50.0%
! TGGACCAAATTGTTGGCCTG+AGG - Chr2:20849688-20849707 MsG0280007806.01.T01:intron 50.0%
! TGGCTTTTACTGTCTGCCTC+AGG + Chr2:20849707-20849726 None:intergenic 50.0%
! TTCGACAGCATTGGAAGCCT+TGG - Chr2:20851905-20851924 MsG0280007806.01.T01:intron 50.0%
AGGTGAGCCTGAAACGGTTG+TGG - Chr2:20852369-20852388 MsG0280007806.01.T01:CDS 55.0%
GAAGGTGGTGAAGGGTCACT+AGG + Chr2:20848975-20848994 None:intergenic 55.0%
GTGCTCCTACCCACGGAATT+AGG - Chr2:20850448-20850467 MsG0280007806.01.T01:intron 55.0%
TGGTCCATGCAAACCAGGAC+TGG - Chr2:20849232-20849251 MsG0280007806.01.T01:CDS 55.0%
! CTGTTTTGTCCCCTGCTCCT+AGG - Chr2:20850915-20850934 MsG0280007806.01.T01:CDS 55.0%
! GCAGCTTGTGCGGTTGATTC+AGG - Chr2:20849155-20849174 MsG0280007806.01.T01:CDS 55.0%
GGTGAAGGGTCACTAGGTGC+TGG + Chr2:20848969-20848988 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 20848903 20852420 20848903 ID=MsG0280007806.01;Name=MsG0280007806.01
Chr2 mRNA 20848903 20852420 20848903 ID=MsG0280007806.01.T01;Parent=MsG0280007806.01;Name=MsG0280007806.01.T01;_AED=0.44;_eAED=0.44;_QI=0|0|0|1|1|1|6|0|456
Chr2 exon 20852061 20852420 20852061 ID=MsG0280007806.01.T01:exon:10571;Parent=MsG0280007806.01.T01
Chr2 exon 20851494 20851661 20851494 ID=MsG0280007806.01.T01:exon:10570;Parent=MsG0280007806.01.T01
Chr2 exon 20851354 20851398 20851354 ID=MsG0280007806.01.T01:exon:10569;Parent=MsG0280007806.01.T01
Chr2 exon 20851037 20851244 20851037 ID=MsG0280007806.01.T01:exon:10568;Parent=MsG0280007806.01.T01
Chr2 exon 20850854 20850935 20850854 ID=MsG0280007806.01.T01:exon:10567;Parent=MsG0280007806.01.T01
Chr2 exon 20848903 20849410 20848903 ID=MsG0280007806.01.T01:exon:10566;Parent=MsG0280007806.01.T01
Chr2 CDS 20852061 20852420 20852061 ID=MsG0280007806.01.T01:cds;Parent=MsG0280007806.01.T01
Chr2 CDS 20851494 20851661 20851494 ID=MsG0280007806.01.T01:cds;Parent=MsG0280007806.01.T01
Chr2 CDS 20851354 20851398 20851354 ID=MsG0280007806.01.T01:cds;Parent=MsG0280007806.01.T01
Chr2 CDS 20851037 20851244 20851037 ID=MsG0280007806.01.T01:cds;Parent=MsG0280007806.01.T01
Chr2 CDS 20850854 20850935 20850854 ID=MsG0280007806.01.T01:cds;Parent=MsG0280007806.01.T01
Chr2 CDS 20848903 20849410 20848903 ID=MsG0280007806.01.T01:cds;Parent=MsG0280007806.01.T01
Gene Sequence

>MsG0280007806.01.T01

ATGATTCTTTTCATCCATAATGTGGAAGGAAGGTACCATCACAAGAAACCAAAGAAAACTTCTCCAGCACCTAGTGACCCTTCACCACCTTCTTCCAATCCTCCTACATCTCCTAGTGTTCCATCTGATCCATATCCATATCCAAATAATCCTGGAGAATCTCCTTCGGATTGCGTTTTCGATGTAAGATCATTTGGAGCAGTTGGAGATGGTAATGCTGATGATACAGCTGCATTTAGAGCAGCATGGAAAGCAGCTTGTGCGGTTGATTCAGGAGTTCTTTTAGCTCCTGAAAATTACTGTTTTAAAATCACTTCTACTATCTTTTCTGGTCCATGCAAACCAGGACTGGTATTTCAAATTGATGGTACTTTGATGGCACCAGATGGACCAAATTGTTGGCCTGAGGCAGACAGTAAAAGCCAATGGCTTGTGTTTTATAGACTTGATCAAATGACTCTAAATGGGACAGGAATTATTGAAGGCAATGGAGAACAATGGTGGGATCTTCCTTGCAAACCTCATAGGAGTCCAAATGGAAAAACTGTATCAGGACCATGTGTTAGCCCTACAATGATAAGGTTCTTCATGAGCTCAAATTTGGTGTTAAGAGGGTTGAAAATACAAAATAGTCCTCAATTCCATGTGAAATTTGATGGTTGTCAAGGAGTATTAATTGATGAATTGTCCATTTCTGCACCTAAACTTAGTCCCAATACTGATGGAATCCACTTAGGAAACACAAGGGATGTTGGAATATATAATTCCTTGATAAGCAATGGTGATGATTGCATTTCAATTGGTCCTGGATGTTCAGATGTGAATGTGGATGGTGTTACTTGTGCTCCTACCCACGGAATTAGCATTGGAAGCCTTGGAGTACACAATTCCCACGCATGTGTCTCAAACCTAACAGTCCGCAACTCAGTCATAAAAGAATCAGACAATGGACTAAGAATCAAAACATGGCAAGGAGGTACAGGATCAGTAACAGGTTTAACATTTGACAACATCCAAATGGAGAATGTAAGAAACTGTATCAACATAGACCAATTCTACTGTTTATCAAAAGAGTGTATGAACCAAACATCAGCAGTATATGTAAACAATATCTCCTACAGAAAAATAAAGGGTACATATGATGTGAGAACACCTCCAATACACTTTGCTTGTAGTGACACTGTTGCTTGCACAAACATCACACTCTCTGAGATTGAACTTTTACCTTATGAAGGTGAATTAGTTGATGACCCTTTTTGTTGGAATGCTTATGGAAGACAAGAGACTTTGACTATTCCTCCACTTGATTGTTTAAGGGAAGGTGAGCCTGAAACGGTTGTGGAGTTATCTGAATATGAATGCAATAATTAA
Protein sequence

>MsG0280007806.01.T01

MILFIHNVEGRYHHKKPKKTSPAPSDPSPPSSNPPTSPSVPSDPYPYPNNPGESPSDCVFDVRSFGAVGDGNADDTAAFRAAWKAACAVDSGVLLAPENYCFKITSTIFSGPCKPGLVFQIDGTLMAPDGPNCWPEADSKSQWLVFYRLDQMTLNGTGIIEGNGEQWWDLPCKPHRSPNGKTVSGPCVSPTMIRFFMSSNLVLRGLKIQNSPQFHVKFDGCQGVLIDELSISAPKLSPNTDGIHLGNTRDVGIYNSLISNGDDCISIGPGCSDVNVDGVTCAPTHGISIGSLGVHNSHACVSNLTVRNSVIKESDNGLRIKTWQGGTGSVTGLTFDNIQMENVRNCINIDQFYCLSKECMNQTSAVYVNNISYRKIKGTYDVRTPPIHFACSDTVACTNITLSEIELLPYEGELVDDPFCWNAYGRQETLTIPPLDCLREGEPETVVELSEYECNN*