AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008923.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008923.01.T01 MTR_2g460590 89.246 716 48 5 1 712 1 691 0.0 1287
MsG0280008923.01.T01 MTR_3g109030 63.963 752 205 12 1 712 1 726 0.0 928
MsG0280008923.01.T01 MTR_7g034605 56.091 706 265 11 13 708 10 680 0.0 791
MsG0280008923.01.T01 MTR_3g088875 55.853 709 260 10 26 711 14 692 0.0 771
MsG0280008923.01.T01 MTR_2g094860 50.347 721 292 12 9 708 28 703 0.0 693
MsG0280008923.01.T01 MTR_4g058730 55.611 597 234 6 30 624 44 611 0.0 671
MsG0280008923.01.T01 MTR_4g130820 50.430 698 292 11 22 711 80 731 0.0 662
MsG0280008923.01.T01 MTR_1g064240 46.622 740 325 13 6 710 6 710 0.0 654
MsG0280008923.01.T01 MTR_3g091080 50.441 680 280 13 40 708 78 711 0.0 630
MsG0280008923.01.T01 MTR_1g028370 49.486 681 286 14 40 708 80 714 0.0 622
MsG0280008923.01.T01 MTR_7g117310 46.089 716 322 14 4 708 54 716 0.0 585
MsG0280008923.01.T01 MTR_7g117310 46.089 716 322 14 4 708 66 728 0.0 584
MsG0280008923.01.T01 MTR_7g117310 46.912 680 307 13 40 708 26 662 0.0 583
MsG0280008923.01.T01 MTR_8g027755 46.029 680 313 15 40 707 82 719 0.0 570
MsG0280008923.01.T01 MTR_6g477760 37.025 605 325 14 43 628 123 690 8.39e-114 359
MsG0280008923.01.T01 MTR_5g007630 37.542 602 317 16 43 630 172 728 1.52e-110 352
MsG0280008923.01.T01 MTR_6g075440 34.380 605 346 15 43 633 169 736 3.17e-108 346
MsG0280008923.01.T01 MTR_6g075440 34.215 605 347 14 43 633 169 736 3.19e-108 347
MsG0280008923.01.T01 MTR_6g075290 37.175 616 336 12 38 639 188 766 5.05e-106 340
MsG0280008923.01.T01 MTR_8g464570 35.927 604 341 14 44 634 63 633 1.06e-105 337
MsG0280008923.01.T01 MTR_2g081110 34.227 634 339 19 41 644 61 646 6.04e-99 319
MsG0280008923.01.T01 MTR_7g012260 35.108 601 343 12 42 628 108 675 8.83e-99 320
MsG0280008923.01.T01 MTR_6g075290 37.655 563 307 11 91 639 32 564 4.28e-94 303
MsG0280008923.01.T01 MTR_6g075290 37.300 563 309 10 91 639 193 725 4.34e-93 305
MsG0280008923.01.T01 MTR_6g075390 33.390 584 335 14 42 610 114 658 7.11e-91 298
MsG0280008923.01.T01 MTR_6g075410 29.934 608 360 16 42 629 97 658 1.18e-79 268
MsG0280008923.01.T01 MTR_6g076060 36.636 434 249 10 232 652 63 483 9.98e-71 239
MsG0280008923.01.T01 MTR_6g075320 37.302 126 72 1 42 167 148 266 7.58e-24 103
MsG0280008923.01.T01 MTR_2g094810 53.846 65 30 0 129 193 12 76 2.84e-15 73.2
MsG0280008923.01.T01 MTR_6g075460 38.095 105 58 3 563 660 45 149 2.89e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008923.01.T01 AT4G30360 62.953 745 217 13 1 711 1 720 0.0 893
MsG0280008923.01.T01 AT2G24610 59.787 751 233 12 1 708 1 725 0.0 865
MsG0280008923.01.T01 AT2G24610 62.536 694 220 10 29 708 73 740 0.0 855
MsG0280008923.01.T01 AT5G14870 56.877 698 248 12 39 711 36 705 0.0 782
MsG0280008923.01.T01 AT3G48010 54.282 689 267 10 40 705 41 704 0.0 730
MsG0280008923.01.T01 AT1G15990 51.950 718 305 12 4 708 48 738 0.0 689
MsG0280008923.01.T01 AT1G19780 51.052 713 307 12 17 712 64 751 0.0 675
MsG0280008923.01.T01 AT2G28260 52.640 625 267 5 30 654 55 650 0.0 668
MsG0280008923.01.T01 AT2G28260 52.640 625 267 5 30 654 15 610 0.0 667
MsG0280008923.01.T01 AT5G57940 49.157 712 298 11 16 708 44 710 0.0 654
MsG0280008923.01.T01 AT5G57940 49.157 712 298 11 16 708 51 717 0.0 654
MsG0280008923.01.T01 AT5G57940 49.157 712 298 11 16 708 51 717 0.0 654
MsG0280008923.01.T01 AT2G23980 49.233 717 302 13 22 708 84 768 0.0 649
MsG0280008923.01.T01 AT2G23980 49.233 717 302 13 22 708 84 768 0.0 649
MsG0280008923.01.T01 AT2G23980 49.233 717 302 13 22 708 84 768 0.0 649
MsG0280008923.01.T01 AT2G23980 49.233 717 302 13 22 708 84 768 0.0 649
MsG0280008923.01.T01 AT2G23980 49.006 704 300 11 22 708 84 745 0.0 644
MsG0280008923.01.T01 AT2G23980 49.006 704 300 11 22 708 84 745 0.0 644
MsG0280008923.01.T01 AT2G23980 49.006 704 300 11 22 708 84 745 0.0 644
MsG0280008923.01.T01 AT2G23980 49.006 704 300 11 22 708 84 745 0.0 644
MsG0280008923.01.T01 AT2G23980 49.006 704 300 11 22 708 84 745 0.0 644
MsG0280008923.01.T01 AT2G23980 49.006 704 300 11 22 708 57 718 0.0 644
MsG0280008923.01.T01 AT4G30560 49.643 701 289 13 22 711 84 731 0.0 644
MsG0280008923.01.T01 AT4G30560 49.643 701 289 13 22 711 84 731 0.0 644
MsG0280008923.01.T01 AT4G30560 49.929 701 287 14 22 711 58 705 0.0 643
MsG0280008923.01.T01 AT4G30560 49.929 701 287 14 22 711 58 705 0.0 643
MsG0280008923.01.T01 AT4G30560 49.929 701 287 14 22 711 58 705 0.0 643
MsG0280008923.01.T01 AT5G53130 50.221 679 280 15 42 708 83 715 0.0 619
MsG0280008923.01.T01 AT1G01340 47.489 697 315 13 32 712 49 710 0.0 615
MsG0280008923.01.T01 AT1G01340 47.489 697 315 13 32 712 44 705 0.0 614
MsG0280008923.01.T01 AT4G01010 47.313 670 308 12 40 706 65 692 0.0 599
MsG0280008923.01.T01 AT4G01010 47.313 670 308 12 40 706 65 692 0.0 599
MsG0280008923.01.T01 AT2G46430 44.395 678 322 13 42 708 71 704 0.0 550
MsG0280008923.01.T01 AT2G46430 44.395 678 322 13 42 708 71 704 0.0 550
MsG0280008923.01.T01 AT1G19780 57.479 468 189 6 255 712 73 540 1.97e-178 520
MsG0280008923.01.T01 AT2G46440 41.521 631 312 16 54 676 40 621 8.17e-146 439
MsG0280008923.01.T01 AT2G46450 36.063 635 339 13 54 682 40 613 1.51e-127 393
MsG0280008923.01.T01 AT2G46450 36.063 635 339 13 54 682 40 613 1.51e-127 393
MsG0280008923.01.T01 AT2G46440 48.190 442 200 10 240 676 26 443 5.30e-123 374
MsG0280008923.01.T01 AT2G46450 34.591 636 326 14 54 683 27 578 1.27e-116 363
MsG0280008923.01.T01 AT2G46450 34.591 636 326 14 54 683 40 591 1.87e-116 363
MsG0280008923.01.T01 AT5G15410 35.826 642 352 14 20 639 90 693 8.67e-105 336
MsG0280008923.01.T01 AT5G15410 35.826 642 352 14 20 639 91 694 8.79e-105 336
MsG0280008923.01.T01 AT3G17690 34.391 599 339 16 43 628 158 715 1.27e-104 336
MsG0280008923.01.T01 AT3G17700 36.074 596 323 17 43 622 192 745 1.03e-100 326
MsG0280008923.01.T01 AT5G54250 34.202 614 346 13 42 634 78 654 2.42e-99 321
MsG0280008923.01.T01 AT5G54250 34.202 614 346 13 42 634 78 654 2.42e-99 321
MsG0280008923.01.T01 AT5G54250 34.202 614 346 13 42 634 78 654 2.42e-99 321
MsG0280008923.01.T01 AT5G54250 33.713 614 344 14 42 634 78 649 2.18e-94 308
MsG0280008923.01.T01 AT3G17690 33.592 515 298 11 43 553 158 632 3.19e-90 295
MsG0280008923.01.T01 AT3G17700 35.824 522 289 14 43 560 192 671 2.82e-88 291
MsG0280008923.01.T01 AT3G17690 31.362 389 230 9 43 427 158 513 2.14e-57 204

Find 184 sgRNAs with CRISPR-Local

Find 454 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCAAATTCATGGTTGATTT+TGG 0.079639 2:+41602514 None:intergenic
CAAAATACTTATATTGTTTA+TGG 0.113548 2:-41606295 MsG0280008923.01.T01:CDS
CTAGATACGACCACATTTAT+TGG 0.139790 2:-41604002 MsG0280008923.01.T01:CDS
AAACTGAAAGTGAAAATAAT+TGG 0.188442 2:+41607658 None:intergenic
CGCCATGGTTCATGCTCCTC+TGG 0.215271 2:+41607447 None:intergenic
ATTTATTTAAAACCCTAAAA+TGG 0.218057 2:+41607684 None:intergenic
GAACTGAATGTCATCTTTAC+TGG 0.231524 2:+41606376 None:intergenic
GACGATTTGTACAATATAAA+TGG 0.253649 2:-41603326 MsG0280008923.01.T01:CDS
GATGACATTCAGTTCAAATA+TGG 0.254694 2:-41606368 MsG0280008923.01.T01:CDS
CCTCCTGTTGTTTGGACAAT+AGG 0.261690 2:+41607318 None:intergenic
GCGCCCAGCTCTCGGGTATT+TGG 0.267113 2:-41607165 MsG0280008923.01.T01:CDS
ATTGATTAGCGACAAACTTT+AGG 0.267203 2:+41602428 None:intergenic
TTCATATGTCTCTAATTTGT+TGG 0.269238 2:-41606583 MsG0280008923.01.T01:CDS
TCATATGTCTCTAATTTGTT+GGG 0.273215 2:-41606582 MsG0280008923.01.T01:CDS
ACACGAAATCTCAAATCTTC+AGG 0.291975 2:+41603351 None:intergenic
ATAAACAACATTTCAGTTAC+AGG 0.297905 2:+41602655 None:intergenic
GTATTATTTGCTCATTTGAT+TGG 0.311517 2:-41603939 MsG0280008923.01.T01:CDS
GATGATTAGTGGCTCTTTAG+AGG 0.318736 2:-41602046 MsG0280008923.01.T01:exon
ATTTACAATCAATTACTATA+AGG 0.318785 2:-41603434 MsG0280008923.01.T01:CDS
TGCTATTGTGATTGCCATCT+TGG 0.319246 2:-41603967 MsG0280008923.01.T01:CDS
CTCAAACCCTGTTTGTTTGA+AGG 0.322072 2:-41601754 MsG0280008923.01.T01:three_prime_UTR
GTAGCCAGATTGTGTTAAAA+TGG 0.323900 2:-41607404 MsG0280008923.01.T01:CDS
GTTTGACATGGAGTTCAAAA+AGG 0.324437 2:-41607639 MsG0280008923.01.T01:exon
TGGAAGGGGTGAACTTGTTA+TGG 0.327438 2:-41607145 MsG0280008923.01.T01:CDS
TGGTGAGGAACTACTTTCTT+GGG 0.328959 2:-41602545 MsG0280008923.01.T01:CDS
GAAATGTTGTTTATCATTAG+AGG 0.336076 2:-41602646 MsG0280008923.01.T01:CDS
GTGGTGAGGAACTACTTTCT+TGG 0.338204 2:-41602546 MsG0280008923.01.T01:CDS
TTCGCTCAAACCGAGATCTT+TGG 0.346003 2:+41602285 None:intergenic
CTCAGGCTAAATTGAACCTT+GGG 0.346085 2:-41602186 MsG0280008923.01.T01:CDS
GTGGAGAAGTCAGGTTCTTC+AGG 0.348344 2:+41602079 None:intergenic
TAGAGATATTGATTATTGTT+TGG 0.355975 2:+41607714 None:intergenic
TTGATTATTTGCGAACTTAA+CGG 0.358374 2:+41606930 None:intergenic
ACATACATACCTTACAAGTT+TGG 0.360110 2:+41607616 None:intergenic
GGTTCCCTTCTTCTCGCAAA+TGG 0.364836 2:-41602761 MsG0280008923.01.T01:CDS
CAATAAATGTGGTCGTATCT+AGG 0.368395 2:+41604003 None:intergenic
TGCATCTCATTATTAAGTTT+AGG 0.370588 2:-41607200 MsG0280008923.01.T01:CDS
AGTTTGTCGCTAATCAATTT+AGG 0.372371 2:-41602423 MsG0280008923.01.T01:CDS
TCTTTGGCCTTCAAACAAAC+AGG 0.373629 2:+41601747 None:intergenic
GCTATTGTGATTGCCATCTT+GGG 0.374396 2:-41603966 MsG0280008923.01.T01:CDS
ATTCTACTCGGATGTGAAAA+AGG 0.375308 2:-41607514 MsG0280008923.01.T01:CDS
CTCTACCGCAGATGCTCATC+TGG 0.383459 2:-41607056 MsG0280008923.01.T01:CDS
ACTCTCACCATTGGAGGACT+TGG 0.388504 2:-41602360 MsG0280008923.01.T01:CDS
TGAAATGCGGTGTGAGGGTT+TGG 0.391228 2:-41607838 MsG0280008923.01.T01:five_prime_UTR
AAAAGCTTCAACCTCACTTA+AGG 0.394918 2:+41602468 None:intergenic
TATTATTTGCTCATTTGATT+GGG 0.400278 2:-41603938 MsG0280008923.01.T01:CDS
AGTTGAAGACGGCAAATTCA+TGG 0.406425 2:+41602504 None:intergenic
CATATGTCGCGCCCAGCTCT+CGG 0.414822 2:-41607173 MsG0280008923.01.T01:CDS
TTGACCGTTATACTACTTGT+TGG 0.415837 2:-41606523 MsG0280008923.01.T01:CDS
TGACTAGAATCTGTAATGTT+AGG 0.427652 2:+41607259 None:intergenic
GTCTGAGGTGTCCGTGTAGC+AGG 0.428426 2:+41607024 None:intergenic
AACTGAAAGTGAAAATAATT+GGG 0.438306 2:+41607659 None:intergenic
TCGATGGTGGTTCTATCTAT+AGG 0.439319 2:-41601979 MsG0280008923.01.T01:three_prime_UTR
TCTTCAGGCTTCAGTAGCTT+AGG 0.444090 2:+41602094 None:intergenic
GAAAAGTAGCATTAAATGAA+TGG 0.444589 2:+41606618 None:intergenic
TGCTCTATTCATGTAACTGA+TGG 0.447529 2:-41601706 MsG0280008923.01.T01:three_prime_UTR
CTGCCTATTGTCCAAACAAC+AGG 0.448734 2:-41607321 MsG0280008923.01.T01:CDS
AACTGAATGTCATCTTTACT+GGG 0.449983 2:+41606377 None:intergenic
CCTTCCAAATACCCGAGAGC+TGG 0.450431 2:+41607161 None:intergenic
CACGAAATCTCAAATCTTCA+GGG 0.454081 2:+41603352 None:intergenic
ATGAATGAAATCGAATCAAA+TGG 0.455201 2:+41607802 None:intergenic
ACTTATATTGTTTATGGTGG+GGG 0.455357 2:-41606289 MsG0280008923.01.T01:CDS
CCAGCTCTCGGGTATTTGGA+AGG 0.456488 2:-41607161 MsG0280008923.01.T01:CDS
CTAGATAGTTCTACAACAAA+TGG 0.456859 2:-41602619 MsG0280008923.01.T01:CDS
ATCATCCATTTGCGAGAAGA+AGG 0.459395 2:+41602756 None:intergenic
ACAACAAATGGTGGCCGGAC+TGG 0.460393 2:-41602607 MsG0280008923.01.T01:CDS
GCCATGGTTCATGCTCCTCT+GGG 0.460916 2:+41607448 None:intergenic
ATATGTCGCGCCCAGCTCTC+GGG 0.461451 2:-41607172 MsG0280008923.01.T01:CDS
CAAACAACAGGAGGAGGAAA+AGG 0.462434 2:-41607309 MsG0280008923.01.T01:CDS
ATCGGCAATCGTGCGAAGAA+AGG 0.465788 2:+41607236 None:intergenic
TACTTATATTGTTTATGGTG+GGG 0.466080 2:-41606290 MsG0280008923.01.T01:CDS
CTCTCACCATTGGAGGACTT+GGG 0.471543 2:-41602359 MsG0280008923.01.T01:CDS
CCGAAGCAGATGATGATTAG+TGG 0.472258 2:-41602057 MsG0280008923.01.T01:exon
GTCGGAATAGATATTAGATA+AGG 0.473019 2:+41601682 None:intergenic
GGGTTACAATACTTGCTTCG+AGG 0.477071 2:-41602165 MsG0280008923.01.T01:CDS
ATACTTATATTGTTTATGGT+GGG 0.480023 2:-41606291 MsG0280008923.01.T01:CDS
TCTGCTTCGGTGGAGAAGTC+AGG 0.482187 2:+41602070 None:intergenic
CAGCTCTCGGGTATTTGGAA+GGG 0.482362 2:-41607160 MsG0280008923.01.T01:CDS
ATCTACATGTGCTCTCTCGC+TGG 0.488052 2:+41602237 None:intergenic
ATCTCAAATCTTCAGGGAGT+TGG 0.488598 2:+41603358 None:intergenic
TACTGGTTCAAACTCGTCTC+AGG 0.489516 2:-41602203 MsG0280008923.01.T01:CDS
AAGAGACACAGAGGAGTGGA+TGG 0.491687 2:-41603388 MsG0280008923.01.T01:CDS
CCACTAATCATCATCTGCTT+CGG 0.492408 2:+41602057 None:intergenic
CAGATGAGCATCTGCGGTAG+AGG 0.492541 2:+41607057 None:intergenic
TTTAACACAATCTGGCTACC+AGG 0.493498 2:+41607408 None:intergenic
AATACTTATATTGTTTATGG+TGG 0.499459 2:-41606292 MsG0280008923.01.T01:CDS
GGTCTAAGCATAGGTGGCGT+TGG 0.499495 2:+41603235 None:intergenic
GGTTGGCAATGAACGTAGAA+TGG 0.501061 2:+41603275 None:intergenic
TTGGATATCACGACGAAGAT+CGG 0.501634 2:+41603254 None:intergenic
TGAATTTGCCGTCTTCAACT+AGG 0.503733 2:-41602501 MsG0280008923.01.T01:CDS
TCGCAAATAATCAAAGCAAC+CGG 0.507332 2:-41606921 MsG0280008923.01.T01:CDS
CTTCCAAATACCCGAGAGCT+GGG 0.509467 2:+41607162 None:intergenic
ATTCAGAAACAGAGCTCAAA+CGG 0.512500 2:+41607737 None:intergenic
TATTCAAAGAACTGCAGTCT+AGG 0.513572 2:+41606453 None:intergenic
TTTGATTCGATTTCATTCAT+CGG 0.516659 2:-41607799 MsG0280008923.01.T01:five_prime_UTR
TCGGAATAGATATTAGATAA+GGG 0.518724 2:+41601683 None:intergenic
TGAAATCGAATCAAATGGAA+TGG 0.518999 2:+41607807 None:intergenic
GAGTGGTTACAAAGACTGCT+TGG 0.521656 2:-41606899 MsG0280008923.01.T01:CDS
ATAGTGATATGCGCAAGATA+TGG 0.522037 2:-41606433 MsG0280008923.01.T01:CDS
AAGTATATAATAAAAGTTGT+CGG 0.523188 2:+41601664 None:intergenic
CTTCAAACAAACAGGGTTTG+AGG 0.523574 2:+41601755 None:intergenic
CATATGTCTCTAATTTGTTG+GGG 0.526693 2:-41606581 MsG0280008923.01.T01:CDS
CTAATCATCATCTGCTTCGG+TGG 0.526825 2:+41602060 None:intergenic
AGCTCTCGGGTATTTGGAAG+GGG 0.531625 2:-41607159 MsG0280008923.01.T01:CDS
AGCAGCTTGTATAAAACAAG+CGG 0.534542 2:+41602336 None:intergenic
CTTGGCGTCGATATAAGAAA+AGG 0.535275 2:-41602315 MsG0280008923.01.T01:CDS
AGTGGTTACAAAGACTGCTT+GGG 0.536792 2:-41606898 MsG0280008923.01.T01:CDS
GTATCTTCTCTAAGCACTCT+AGG 0.542017 2:-41602703 MsG0280008923.01.T01:CDS
GTTACAAAGACTGCTTGGGC+AGG 0.545026 2:-41606894 MsG0280008923.01.T01:CDS
TGAGGCATATATTACACGAT+CGG 0.545763 2:+41601773 None:intergenic
ACGGAGAGAGAAGCAGAGAA+AGG 0.546393 2:+41607756 None:intergenic
TCATTTGATTGGGAACATGC+AGG 0.546582 2:-41603928 MsG0280008923.01.T01:intron
AGGATGTCTGCCAAAGATCT+CGG 0.549470 2:-41602295 MsG0280008923.01.T01:CDS
TGCAATCTTCATCTGAGAGT+AGG 0.551398 2:-41601806 MsG0280008923.01.T01:three_prime_UTR
CTTTGGCCTTCAAACAAACA+GGG 0.558754 2:+41601748 None:intergenic
GTAGATGAGGAATATCCTAC+TGG 0.563153 2:-41602220 MsG0280008923.01.T01:CDS
TCTCAGGCTAAATTGAACCT+TGG 0.563157 2:-41602187 MsG0280008923.01.T01:CDS
ATTTCCAACAAGTAGTATAA+CGG 0.563971 2:+41606519 None:intergenic
AAATAATACAAGTCCCAAGA+TGG 0.564678 2:+41603953 None:intergenic
GGTTAAAGAAGAAGGAACAA+AGG 0.568217 2:-41607493 MsG0280008923.01.T01:CDS
TGATGCGATATGTGAGCGGC+TGG 0.570933 2:-41602725 MsG0280008923.01.T01:CDS
TGTTAGGTCAGTCTTAAGAC+AGG 0.572006 2:+41607275 None:intergenic
CGAGAGAGCACATGTAGATG+AGG 0.573961 2:-41602233 MsG0280008923.01.T01:CDS
GAATGGAAAGCTATGAAGCA+TGG 0.574302 2:+41606635 None:intergenic
AAGAGCATTATTGTTGTGAT+CGG 0.577591 2:+41607002 None:intergenic
TATAATGAAATGCGGTGTGA+GGG 0.577817 2:-41607843 MsG0280008923.01.T01:five_prime_UTR
AGGCACCTACATTGTTCGTG+AGG 0.578578 2:-41602683 MsG0280008923.01.T01:CDS
TGGACCCAGCTAAAATTGCT+AGG 0.581388 2:-41607125 MsG0280008923.01.T01:CDS
CTATAATGAAATGCGGTGTG+AGG 0.585394 2:-41607844 MsG0280008923.01.T01:five_prime_UTR
ATTGTCCAAACAACAGGAGG+AGG 0.585540 2:-41607315 MsG0280008923.01.T01:CDS
AGCGAAGAGACACAGAGGAG+TGG 0.586237 2:-41603392 MsG0280008923.01.T01:CDS
AGTCTTAAGACAGGAAGAAG+AGG 0.590748 2:+41607284 None:intergenic
TTGAGTTGAAGAAACCAGTC+CGG 0.592271 2:+41602593 None:intergenic
AAACACGGGCATACGAGTCA+AGG 0.592702 2:+41601932 None:intergenic
AGAGCTGGGCGCGACATATG+CGG 0.594394 2:+41607176 None:intergenic
TTACTATAAGGCTTGAAGAG+TGG 0.594854 2:-41603422 MsG0280008923.01.T01:CDS
AACTCAATCATATTGAGACC+TGG 0.601182 2:-41602577 MsG0280008923.01.T01:CDS
GTTCTACAACAAATGGTGGC+CGG 0.601443 2:-41602612 MsG0280008923.01.T01:CDS
ATATCACGACGAAGATCGGT+TGG 0.603986 2:+41603258 None:intergenic
TTAACACAATCTGGCTACCA+GGG 0.604863 2:+41607409 None:intergenic
TCATCCATTTGCGAGAAGAA+GGG 0.606750 2:+41602757 None:intergenic
CTATAAGGCTTGAAGAGTGG+AGG 0.610770 2:-41603419 MsG0280008923.01.T01:CDS
AAGCGGCCCAAGTCCTCCAA+TGG 0.611001 2:+41602353 None:intergenic
GTTTCTTCTATAATGAAATG+CGG 0.615037 2:-41607851 MsG0280008923.01.T01:five_prime_UTR
GATGTTCTATTCAGTGTCGA+TGG 0.615238 2:-41601995 MsG0280008923.01.T01:three_prime_UTR
AGCAGTCTTTGTAACCACTC+CGG 0.618246 2:+41606902 None:intergenic
TTAGAAAGGAACACAAAAGG+TGG 0.619911 2:-41601895 MsG0280008923.01.T01:three_prime_UTR
ATAGGCAGATAAAAGTACAA+TGG 0.620483 2:+41607336 None:intergenic
TTAACCGTCCTAGTTGAAGA+CGG 0.623769 2:+41602493 None:intergenic
AAAGTCATACTCGTCTAACA+AGG 0.625807 2:+41603214 None:intergenic
TTCTTGATGCGATATGTGAG+CGG 0.626053 2:-41602729 MsG0280008923.01.T01:CDS
TGACGTTTCTCCAATAAATG+TGG 0.626300 2:+41603992 None:intergenic
TTTGCCGTCTTCAACTAGGA+CGG 0.626347 2:-41602497 MsG0280008923.01.T01:CDS
AGGTAGAGAAAGCAATTGTG+AGG 0.626391 2:+41606473 None:intergenic
GTTCTATTCAGTGTCGATGG+TGG 0.627399 2:-41601992 MsG0280008923.01.T01:three_prime_UTR
GGCACCTACATTGTTCGTGA+GGG 0.628164 2:-41602682 MsG0280008923.01.T01:CDS
GATAGTTCTACAACAAATGG+TGG 0.633724 2:-41602616 MsG0280008923.01.T01:CDS
ATGGTGAGAGTAAAATCGAA+AGG 0.636218 2:+41602372 None:intergenic
TAAACAACATTTCAGTTACA+GGG 0.638496 2:+41602656 None:intergenic
GTCTAACAAGGTCTAAGCAT+AGG 0.640600 2:+41603226 None:intergenic
GTCTTAAGACAGGAAGAAGA+GGG 0.641455 2:+41607285 None:intergenic
GTTGTTGTGTAGATTCTACT+CGG 0.642813 2:-41607526 MsG0280008923.01.T01:intron
AGAGACACAGAGGAGTGGAT+GGG 0.645513 2:-41603387 MsG0280008923.01.T01:CDS
ATGCAATAGATAAAAGACAT+CGG 0.646478 2:+41607218 None:intergenic
GTCACCCTCACGAACAATGT+AGG 0.649930 2:+41602678 None:intergenic
TTTGCTGCTAACACACGAAG+AGG 0.651154 2:-41602142 MsG0280008923.01.T01:CDS
CCTATTGTCCAAACAACAGG+AGG 0.654874 2:-41607318 MsG0280008923.01.T01:CDS
ATATGTCTCTAATTTGTTGG+GGG 0.656843 2:-41606580 MsG0280008923.01.T01:CDS
TAACAAGGTCTAAGCATAGG+TGG 0.657585 2:+41603229 None:intergenic
GACGGTTAAAGCCTTAAGTG+AGG 0.658230 2:-41602479 MsG0280008923.01.T01:CDS
GGTAGAGAAAGCAATTGTGA+GGG 0.663375 2:+41606474 None:intergenic
TTATTGTTGTGATCGGTCTG+AGG 0.664402 2:+41607009 None:intergenic
TATAAATGGCTTGCAACTCG+CGG 0.665935 2:-41603312 MsG0280008923.01.T01:CDS
AAGCAAGTATTGTAACCCCA+AGG 0.670194 2:+41602170 None:intergenic
CGGGCATACGAGTCAAGGAG+AGG 0.672921 2:+41601937 None:intergenic
ATAAACCAGATGAGCATCTG+CGG 0.673362 2:+41607051 None:intergenic
GGTTTATCATACCTGCTACA+CGG 0.675399 2:-41607035 MsG0280008923.01.T01:CDS
TCCCAGAGGAGCATGAACCA+TGG 0.690230 2:-41607449 MsG0280008923.01.T01:CDS
TCTTTCGTTAGATGAGACAG+TGG 0.698475 2:-41602260 MsG0280008923.01.T01:CDS
ACTGAATGTCATCTTTACTG+GGG 0.701690 2:+41606378 None:intergenic
AATAATCAAAGCAACCGGAG+TGG 0.706383 2:-41606916 MsG0280008923.01.T01:CDS
TCAGGCTAAATTGAACCTTG+GGG 0.709233 2:-41602185 MsG0280008923.01.T01:CDS
GCTAAAGCGAAGAGACACAG+AGG 0.717118 2:-41603397 MsG0280008923.01.T01:CDS
ATCATACAAAGTATTCCCAG+AGG 0.721646 2:-41607463 MsG0280008923.01.T01:CDS
TGAGACGAGTTTGAACCAGT+AGG 0.737206 2:+41602205 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATCATTATTACATATTAAT+AGG + Chr2:41603499-41603518 None:intergenic 10.0%
!! TTGAAATATATTTATAACTA+TGG - Chr2:41604338-41604357 MsG0280008923.01.T01:intron 10.0%
!!! ATTTGTAAATAATTTGTTTT+AGG - Chr2:41605642-41605661 MsG0280008923.01.T01:intron 10.0%
!! AATGAAAATTGTAATGATAT+AGG - Chr2:41606708-41606727 MsG0280008923.01.T01:intron 15.0%
!! ATTTACAATCAATTACTATA+AGG - Chr2:41606112-41606131 MsG0280008923.01.T01:intron 15.0%
!! CAAAATACTTATATTGTTTA+TGG - Chr2:41603251-41603270 MsG0280008923.01.T01:CDS 15.0%
!! CCATTATTAAAATATCAAAA+CGG + Chr2:41605955-41605974 None:intergenic 15.0%
!!! ATTTATTTAAAACCCTAAAA+TGG + Chr2:41601865-41601884 None:intergenic 15.0%
!!! CTTTTTAAAAGTGATTTTTA+GGG + Chr2:41604296-41604315 None:intergenic 15.0%
!!! TATATCATTACAATTTTCAT+TGG + Chr2:41606709-41606728 None:intergenic 15.0%
!! AAAAACAAAGATTCTTTCTT+TGG + Chr2:41607818-41607837 None:intergenic 20.0%
!! AAACTGAAAGTGAAAATAAT+TGG + Chr2:41601891-41601910 None:intergenic 20.0%
!! AAAGTTAAAATGTACTAAGT+TGG - Chr2:41605035-41605054 MsG0280008923.01.T01:intron 20.0%
!! AAATACATCATTCAAAAACA+CGG + Chr2:41607632-41607651 None:intergenic 20.0%
!! AACTGAAAGTGAAAATAATT+GGG + Chr2:41601890-41601909 None:intergenic 20.0%
!! AATACTTATATTGTTTATGG+TGG - Chr2:41603254-41603273 MsG0280008923.01.T01:CDS 20.0%
!! ATACTTATATTGTTTATGGT+GGG - Chr2:41603255-41603274 MsG0280008923.01.T01:CDS 20.0%
!! ATGATGAATGTTAATGTTTA+TGG + Chr2:41601959-41601978 None:intergenic 20.0%
!! ATTACATATTAATAGGTGTT+AGG + Chr2:41603492-41603511 None:intergenic 20.0%
!! GGAAAAATCAAATATAATCT+CGG + Chr2:41602598-41602617 None:intergenic 20.0%
!! TAATTTGATATTGTACATGT+TGG - Chr2:41602684-41602703 MsG0280008923.01.T01:CDS 20.0%
!! TATTATTTGCTCATTTGATT+GGG - Chr2:41605608-41605627 MsG0280008923.01.T01:intron 20.0%
!! TTATGATTCAGTATATAAGT+TGG - Chr2:41604533-41604552 MsG0280008923.01.T01:intron 20.0%
!!! AAGTTCTAAAATTTGCTAAA+AGG + Chr2:41604456-41604475 None:intergenic 20.0%
!!! AGTTCTAAAATTTGCTAAAA+GGG + Chr2:41604455-41604474 None:intergenic 20.0%
!!! CCGTTTTGATATTTTAATAA+TGG - Chr2:41605952-41605971 MsG0280008923.01.T01:intron 20.0%
!!! GCTTTTTAAAAGTGATTTTT+AGG + Chr2:41604297-41604316 None:intergenic 20.0%
!!! TAGAGATATTGATTATTGTT+TGG + Chr2:41601835-41601854 None:intergenic 20.0%
!!! TATAGGTAAAAATGTACTTT+TGG - Chr2:41606725-41606744 MsG0280008923.01.T01:intron 20.0%
!!! TCACTTTTAAATTGCATATT+GGG + Chr2:41604604-41604623 None:intergenic 20.0%
!!! TTCACTTTTAAATTGCATAT+TGG + Chr2:41604605-41604624 None:intergenic 20.0%
!!! TTGAATGATGTATTTTAGAA+AGG - Chr2:41607637-41607656 MsG0280008923.01.T01:exon 20.0%
! AAAGTTTAATGAACGTAAGT+TGG - Chr2:41606657-41606676 MsG0280008923.01.T01:intron 25.0%
! AAATTGTATTCTATCATGCT+TGG + Chr2:41603560-41603579 None:intergenic 25.0%
! AATACATCATTCAAAAACAC+GGG + Chr2:41607631-41607650 None:intergenic 25.0%
! ACAATCAAATTCAAATTCAC+TGG + Chr2:41601997-41602016 None:intergenic 25.0%
! ACATTCATATTGCATAAGAA+TGG - Chr2:41604937-41604956 MsG0280008923.01.T01:intron 25.0%
! ACCATGAAAATAGAGAAAAA+AGG - Chr2:41603670-41603689 MsG0280008923.01.T01:intron 25.0%
! ACTAAAAAATGAACAGAACA+AGG - Chr2:41603914-41603933 MsG0280008923.01.T01:intron 25.0%
! ACTTTGTTAGTAATATTAGC+AGG + Chr2:41603401-41603420 None:intergenic 25.0%
! AGTAATAAAATACAAGTCAG+TGG + Chr2:41606536-41606555 None:intergenic 25.0%
! AGTTAATGTAGAGAAAACTA+TGG + Chr2:41606060-41606079 None:intergenic 25.0%
! ATAAACAACATTTCAGTTAC+AGG + Chr2:41606894-41606913 None:intergenic 25.0%
! ATAAATCCTTTGAATGTTGT+CGG + Chr2:41604517-41604536 None:intergenic 25.0%
! ATATTTATAACTATGGTCTC+TGG - Chr2:41604345-41604364 MsG0280008923.01.T01:intron 25.0%
! ATGAATGAAATCGAATCAAA+TGG + Chr2:41601747-41601766 None:intergenic 25.0%
! ATGCAATAGATAAAAGACAT+CGG + Chr2:41602331-41602350 None:intergenic 25.0%
! ATTTCCAACAAGTAGTATAA+CGG + Chr2:41603030-41603049 None:intergenic 25.0%
! CAAAGTTATAGATACTATCA+TGG - Chr2:41603415-41603434 MsG0280008923.01.T01:CDS 25.0%
! CAAATTTCATAACTTATGAC+AGG + Chr2:41603313-41603332 None:intergenic 25.0%
! CATTCATATTGCATAAGAAT+GGG - Chr2:41604938-41604957 MsG0280008923.01.T01:intron 25.0%
! CATTTGATTAATTAATGTCG+AGG - Chr2:41603347-41603366 MsG0280008923.01.T01:CDS 25.0%
! CCATGAAAATAGAGAAAAAA+GGG - Chr2:41603671-41603690 MsG0280008923.01.T01:intron 25.0%
! CGTATATAGAGAATACAAAA+TGG - Chr2:41605901-41605920 MsG0280008923.01.T01:intron 25.0%
! GAAAAGTAGCATTAAATGAA+TGG + Chr2:41602931-41602950 None:intergenic 25.0%
! GACGATTTGTACAATATAAA+TGG - Chr2:41606220-41606239 MsG0280008923.01.T01:intron 25.0%
! GTATTATTTGCTCATTTGAT+TGG - Chr2:41605607-41605626 MsG0280008923.01.T01:intron 25.0%
! GTTTCTTCTATAATGAAATG+CGG - Chr2:41601695-41601714 MsG0280008923.01.T01:three_prime_UTR 25.0%
! TAAACAACATTTCAGTTACA+GGG + Chr2:41606893-41606912 None:intergenic 25.0%
! TACTTATATTGTTTATGGTG+GGG - Chr2:41603256-41603275 MsG0280008923.01.T01:CDS 25.0%
! TATAGATACTATCATGGTAT+GGG - Chr2:41603421-41603440 MsG0280008923.01.T01:CDS 25.0%
! TATTTATAACTATGGTCTCT+GGG - Chr2:41604346-41604365 MsG0280008923.01.T01:intron 25.0%
! TCGGAATAGATATTAGATAA+GGG + Chr2:41607866-41607885 None:intergenic 25.0%
! TGCATCTCATTATTAAGTTT+AGG - Chr2:41602346-41602365 MsG0280008923.01.T01:CDS 25.0%
! TTATAGATACTATCATGGTA+TGG - Chr2:41603420-41603439 MsG0280008923.01.T01:CDS 25.0%
! TTCCAAAACTATAAACAACA+GGG + Chr2:41606392-41606411 None:intergenic 25.0%
! TTGATTATTTGCGAACTTAA+CGG + Chr2:41602619-41602638 None:intergenic 25.0%
! TTTCCAAAACTATAAACAAC+AGG + Chr2:41606393-41606412 None:intergenic 25.0%
!! AAAGTTTAAAACCTTGTTTG+TGG - Chr2:41605370-41605389 MsG0280008923.01.T01:intron 25.0%
!! AGAACTTCAATATCTCTTTT+TGG - Chr2:41604469-41604488 MsG0280008923.01.T01:intron 25.0%
!! GAAATGTTGTTTATCATTAG+AGG - Chr2:41606900-41606919 MsG0280008923.01.T01:CDS 25.0%
!! TTCATATGTCTCTAATTTGT+TGG - Chr2:41602963-41602982 MsG0280008923.01.T01:intron 25.0%
!! TTTGATTCGATTTCATTCAT+CGG - Chr2:41601747-41601766 MsG0280008923.01.T01:three_prime_UTR 25.0%
!! TTTTTCTCTATTTTCATGGT+AGG + Chr2:41603670-41603689 None:intergenic 25.0%
!!! ACTGACTTGTATTTTATTAC+TGG - Chr2:41606535-41606554 MsG0280008923.01.T01:CDS 25.0%
!!! ATCACTTTTAAAAAGCGAAA+TGG - Chr2:41604301-41604320 MsG0280008923.01.T01:intron 25.0%
!!! ATTTTAGAAAGGAACACAAA+AGG - Chr2:41607648-41607667 MsG0280008923.01.T01:exon 25.0%
!!! GAAAAGCATTTTGTAAACTT+AGG + Chr2:41606570-41606589 None:intergenic 25.0%
!!! TCATATGTCTCTAATTTGTT+GGG - Chr2:41602964-41602983 MsG0280008923.01.T01:intron 25.0%
!!! TTTAAAAGTGATTTTTAGGG+TGG + Chr2:41604293-41604312 None:intergenic 25.0%
AAAAGAAACAAGAATGGAAG+GGG + Chr2:41605738-41605757 None:intergenic 30.0%
AAAGATGCTAAAGCCATATA+AGG + Chr2:41606619-41606638 None:intergenic 30.0%
AAATAATACAAGTCCCAAGA+TGG + Chr2:41605596-41605615 None:intergenic 30.0%
AACACATTGGAAATGCTATA+AGG - Chr2:41605094-41605113 MsG0280008923.01.T01:intron 30.0%
AACATACAAATTTCAGTTCC+AGG + Chr2:41605284-41605303 None:intergenic 30.0%
AACTGAATGTCATCTTTACT+GGG + Chr2:41603172-41603191 None:intergenic 30.0%
AACTTCTTCACAAAATAGAG+GGG + Chr2:41604226-41604245 None:intergenic 30.0%
ACAAAAGAAACAAGAATGGA+AGG + Chr2:41605740-41605759 None:intergenic 30.0%
ACACTTGCAATCGTAATATT+TGG + Chr2:41604780-41604799 None:intergenic 30.0%
ACATACATACCTTACAAGTT+TGG + Chr2:41601933-41601952 None:intergenic 30.0%
ACTTATATTGTTTATGGTGG+GGG - Chr2:41603257-41603276 MsG0280008923.01.T01:CDS 30.0%
AGGAAATAATATAGGAAAGG+TGG - Chr2:41604896-41604915 MsG0280008923.01.T01:intron 30.0%
AGTTTGTCGCTAATCAATTT+AGG - Chr2:41607123-41607142 MsG0280008923.01.T01:CDS 30.0%
ATAAGATAATCGTAGTGTAG+TGG - Chr2:41604413-41604432 MsG0280008923.01.T01:intron 30.0%
ATATGCATTAAATGCATCGT+TGG - Chr2:41605329-41605348 MsG0280008923.01.T01:intron 30.0%
ATCATATCGTGATCATGTTT+AGG + Chr2:41604564-41604583 None:intergenic 30.0%
ATCTTTAGGCTTATTACCTA+AGG - Chr2:41606633-41606652 MsG0280008923.01.T01:CDS 30.0%
ATGTGTTATCCATTATGTGT+AGG + Chr2:41605081-41605100 None:intergenic 30.0%
ATTGATTAGCGACAAACTTT+AGG + Chr2:41607121-41607140 None:intergenic 30.0%
CAAAAGAAACAAGAATGGAA+GGG + Chr2:41605739-41605758 None:intergenic 30.0%
CAACTTCTTCACAAAATAGA+GGG + Chr2:41604227-41604246 None:intergenic 30.0%
CCAAACAACGAATAAAATAG+AGG - Chr2:41605207-41605226 MsG0280008923.01.T01:intron 30.0%
CTCTACATTAACTCTGATTT+GGG - Chr2:41606067-41606086 MsG0280008923.01.T01:intron 30.0%
GATAAAATGGATAGAAAGGA+TGG + Chr2:41605155-41605174 None:intergenic 30.0%
GATGACATTCAGTTCAAATA+TGG - Chr2:41603178-41603197 MsG0280008923.01.T01:intron 30.0%
GCTAACAAAAGAAACAAGAA+TGG + Chr2:41605744-41605763 None:intergenic 30.0%
GTCGGAATAGATATTAGATA+AGG + Chr2:41607867-41607886 None:intergenic 30.0%
GTGAAAAAGGTTAAAGAAGA+AGG - Chr2:41602045-41602064 MsG0280008923.01.T01:exon 30.0%
GTTCCAGAAATACTCTAATA+AGG + Chr2:41604271-41604290 None:intergenic 30.0%
TAAGATAATCGTAGTGTAGT+GGG - Chr2:41604414-41604433 MsG0280008923.01.T01:intron 30.0%
TACATGCATACATACATACA+TGG + Chr2:41602714-41602733 None:intergenic 30.0%
TATATTGATATGTGATGCGA+TGG - Chr2:41603446-41603465 MsG0280008923.01.T01:intron 30.0%
TCGAGGAAATAATATAGGAA+AGG - Chr2:41604893-41604912 MsG0280008923.01.T01:intron 30.0%
TCTCTACATTAACTCTGATT+TGG - Chr2:41606066-41606085 MsG0280008923.01.T01:intron 30.0%
TGAAATCGAATCAAATGGAA+TGG + Chr2:41601742-41601761 None:intergenic 30.0%
TGACTAGAATCTGTAATGTT+AGG + Chr2:41602290-41602309 None:intergenic 30.0%
TTCAGTGTAATAACAAGTGT+CGG - Chr2:41602825-41602844 MsG0280008923.01.T01:intron 30.0%
TTTGCAGTGATGTATTATTG+TGG - Chr2:41604867-41604886 MsG0280008923.01.T01:intron 30.0%
! ACAATTTTCATTGGCATCAA+TGG + Chr2:41606700-41606719 None:intergenic 30.0%
! ATAGGCAGATAAAAGTACAA+TGG + Chr2:41602213-41602232 None:intergenic 30.0%
! CAACCTTATTAGAGTATTTC+TGG - Chr2:41604265-41604284 MsG0280008923.01.T01:intron 30.0%
! CCTCTATTTTATTCGTTGTT+TGG + Chr2:41605210-41605229 None:intergenic 30.0%
! CGTTCATTAAACTTTTCCTT+AGG + Chr2:41606652-41606671 None:intergenic 30.0%
! CTAGATAGTTCTACAACAAA+TGG - Chr2:41606927-41606946 MsG0280008923.01.T01:CDS 30.0%
! CTCTATCTGATTCCATTTTA+GGG - Chr2:41601850-41601869 MsG0280008923.01.T01:three_prime_UTR 30.0%
! CTTTCCTTTCTCTATTTTCA+TGG + Chr2:41603877-41603896 None:intergenic 30.0%
! CTTTCTCTATTTTCATGGTA+GGG + Chr2:41603872-41603891 None:intergenic 30.0%
! GTTAAAATGTACTAAGTTGG+TGG - Chr2:41605038-41605057 MsG0280008923.01.T01:intron 30.0%
! TCTCTATCTGATTCCATTTT+AGG - Chr2:41601849-41601868 MsG0280008923.01.T01:three_prime_UTR 30.0%
! TTTTCACTTTCAGTTTGACA+TGG - Chr2:41601895-41601914 MsG0280008923.01.T01:three_prime_UTR 30.0%
! TTTTCTTCTGCCAATTGTTT+GGG + Chr2:41605256-41605275 None:intergenic 30.0%
!! AACGCTTGATAACTTGTTTA+TGG - Chr2:41604708-41604727 MsG0280008923.01.T01:intron 30.0%
!! AAGAGCATTATTGTTGTGAT+CGG + Chr2:41602547-41602566 None:intergenic 30.0%
!! ACACATAATGGATAACACAT+TGG - Chr2:41605081-41605100 MsG0280008923.01.T01:intron 30.0%
!! ACTGTTAGAACAGCTTTAAA+AGG + Chr2:41604199-41604218 None:intergenic 30.0%
!! ATATGTCTCTAATTTGTTGG+GGG - Chr2:41602966-41602985 MsG0280008923.01.T01:intron 30.0%
!! CATATGTCTCTAATTTGTTG+GGG - Chr2:41602965-41602984 MsG0280008923.01.T01:intron 30.0%
!! GATTCCATTTTAACACAATC+TGG + Chr2:41602149-41602168 None:intergenic 30.0%
!! GCAAATTCATGGTTGATTTT+GGG + Chr2:41607034-41607053 None:intergenic 30.0%
!! GTTTAGCAAAGTAATTTGCT+AGG + Chr2:41605801-41605820 None:intergenic 30.0%
!! TACCCTGTTGTTTATAGTTT+TGG - Chr2:41606387-41606406 MsG0280008923.01.T01:CDS 30.0%
!! TATATGGCTTTAGCATCTTT+AGG - Chr2:41606619-41606638 MsG0280008923.01.T01:CDS 30.0%
!! TGATAACTTGTTTATGGTGT+TGG - Chr2:41604714-41604733 MsG0280008923.01.T01:intron 30.0%
!!! CCCTTTTTTCTCTATTTTCA+TGG + Chr2:41603674-41603693 None:intergenic 30.0%
!!! GTTCTGTTCATTTTTTAGTC+AGG + Chr2:41603913-41603932 None:intergenic 30.0%
!!! TGGACGTTTTCTTATTTTGT+TGG - Chr2:41605921-41605940 MsG0280008923.01.T01:intron 30.0%
!!! TGGTTTTGTTTCAGTTCTTA+TGG - Chr2:41605514-41605533 MsG0280008923.01.T01:intron 30.0%
!!! TTTTGGTAACGACTTTGTAA+TGG - Chr2:41603627-41603646 MsG0280008923.01.T01:intron 30.0%
AAAAGCTTCAACCTCACTTA+AGG + Chr2:41607081-41607100 None:intergenic 35.0%
AAAGTCATACTCGTCTAACA+AGG + Chr2:41606335-41606354 None:intergenic 35.0%
AACACAAAAGGTGGAAAAAC+CGG - Chr2:41607660-41607679 MsG0280008923.01.T01:five_prime_UTR 35.0%
AACTCAATCATATTGAGACC+TGG - Chr2:41606969-41606988 MsG0280008923.01.T01:CDS 35.0%
AATGGTGTTCCTACACATAA+TGG - Chr2:41605069-41605088 MsG0280008923.01.T01:intron 35.0%
ACAAAAACGGTGACGTTTAA+GGG - Chr2:41604131-41604150 MsG0280008923.01.T01:intron 35.0%
ACACGAAATCTCAAATCTTC+AGG + Chr2:41606198-41606217 None:intergenic 35.0%
ACTGAATGTCATCTTTACTG+GGG + Chr2:41603171-41603190 None:intergenic 35.0%
ACTTAGCTCATGTCCATAAT+TGG - Chr2:41606471-41606490 MsG0280008923.01.T01:CDS 35.0%
AGCAGCTTGTATAAAACAAG+CGG + Chr2:41607213-41607232 None:intergenic 35.0%
AGCCTCTTGTGTAAAAAACA+GGG + Chr2:41603776-41603795 None:intergenic 35.0%
AGGTGTTAGGACTTTGTATT+TGG + Chr2:41603479-41603498 None:intergenic 35.0%
ATAGTGATATGCGCAAGATA+TGG - Chr2:41603113-41603132 MsG0280008923.01.T01:intron 35.0%
ATCGTGATCATGTTTAGGTA+AGG + Chr2:41604559-41604578 None:intergenic 35.0%
ATGGTGAGAGTAAAATCGAA+AGG + Chr2:41607177-41607196 None:intergenic 35.0%
ATTCAGAAACAGAGCTCAAA+CGG + Chr2:41601812-41601831 None:intergenic 35.0%
ATTCTACTCGGATGTGAAAA+AGG - Chr2:41602032-41602051 MsG0280008923.01.T01:three_prime_UTR 35.0%
CAATAAATGTGGTCGTATCT+AGG + Chr2:41605546-41605565 None:intergenic 35.0%
CACGAAATCTCAAATCTTCA+GGG + Chr2:41606197-41606216 None:intergenic 35.0%
CAGGGATAAAATGGATAGAA+AGG + Chr2:41605159-41605178 None:intergenic 35.0%
CCAACTTCTTCACAAAATAG+AGG + Chr2:41604228-41604247 None:intergenic 35.0%
CCTACCATGAAAATAGAGAA+AGG - Chr2:41603667-41603686 MsG0280008923.01.T01:intron 35.0%
CTAGATACGACCACATTTAT+TGG - Chr2:41605544-41605563 MsG0280008923.01.T01:intron 35.0%
CTTGTGTAAAAAACAGGGTA+AGG + Chr2:41603771-41603790 None:intergenic 35.0%
GAACTGAATGTCATCTTTAC+TGG + Chr2:41603173-41603192 None:intergenic 35.0%
GATTTATGCTGTGCCTTATA+TGG - Chr2:41606603-41606622 MsG0280008923.01.T01:CDS 35.0%
GCAATCGTAATATTTGGTCA+TGG + Chr2:41604774-41604793 None:intergenic 35.0%
GGAACAAATACTACTTCTTC+AGG + Chr2:41604004-41604023 None:intergenic 35.0%
GGTCAATTATGCTCCAATTA+TGG + Chr2:41606487-41606506 None:intergenic 35.0%
GGTTAAAGAAGAAGGAACAA+AGG - Chr2:41602053-41602072 MsG0280008923.01.T01:exon 35.0%
GTAGCCAGATTGTGTTAAAA+TGG - Chr2:41602142-41602161 MsG0280008923.01.T01:CDS 35.0%
GTATCAGCAAAATTCCACTA+TGG + Chr2:41604646-41604665 None:intergenic 35.0%
GTATTTGTTCCACCATCAAA+AGG - Chr2:41604013-41604032 MsG0280008923.01.T01:CDS 35.0%
GTTATTAGTCACATCCATAG+TGG - Chr2:41604629-41604648 MsG0280008923.01.T01:intron 35.0%
GTTGTTGTGTAGATTCTACT+CGG - Chr2:41602020-41602039 MsG0280008923.01.T01:three_prime_UTR 35.0%
GTTTGACATGGAGTTCAAAA+AGG - Chr2:41601907-41601926 MsG0280008923.01.T01:three_prime_UTR 35.0%
TACTTTCCATCTATGAAGCA+CGG - Chr2:41602732-41602751 MsG0280008923.01.T01:CDS 35.0%
TATAATGAAATGCGGTGTGA+GGG - Chr2:41601703-41601722 MsG0280008923.01.T01:three_prime_UTR 35.0%
TATTCAAAGAACTGCAGTCT+AGG + Chr2:41603096-41603115 None:intergenic 35.0%
TCAAAAAGGCCAAACTTGTA+AGG - Chr2:41601921-41601940 MsG0280008923.01.T01:three_prime_UTR 35.0%
TCGCAAATAATCAAAGCAAC+CGG - Chr2:41602625-41602644 MsG0280008923.01.T01:CDS 35.0%
TGACGTTTCTCCAATAAATG+TGG + Chr2:41605557-41605576 None:intergenic 35.0%
TGAGGCATATATTACACGAT+CGG + Chr2:41607776-41607795 None:intergenic 35.0%
TGCTCTATTCATGTAACTGA+TGG - Chr2:41607840-41607859 MsG0280008923.01.T01:five_prime_UTR 35.0%
TGTACAATACACCAAATGGT+GGG + Chr2:41603745-41603764 None:intergenic 35.0%
TGTGTTCCTTCACCAAAATT+AGG - Chr2:41604816-41604835 MsG0280008923.01.T01:intron 35.0%
TTACTATAAGGCTTGAAGAG+TGG - Chr2:41606124-41606143 MsG0280008923.01.T01:intron 35.0%
TTAGAAAGGAACACAAAAGG+TGG - Chr2:41607651-41607670 MsG0280008923.01.T01:exon 35.0%
TTGACCGTTATACTACTTGT+TGG - Chr2:41603023-41603042 MsG0280008923.01.T01:intron 35.0%
TTGCAAAAATGAACGAGTGT+TGG + Chr2:41606508-41606527 None:intergenic 35.0%
TTGGAAATGCTATAAGGATG+AGG - Chr2:41605100-41605119 MsG0280008923.01.T01:intron 35.0%
! ATCATACAAAGTATTCCCAG+AGG - Chr2:41602083-41602102 MsG0280008923.01.T01:CDS 35.0%
! CCTCTATTTTGTGAAGAAGT+TGG - Chr2:41604225-41604244 MsG0280008923.01.T01:intron 35.0%
! CCTTTCTCTATTTTCATGGT+AGG + Chr2:41603873-41603892 None:intergenic 35.0%
! CTTTTCTTCTGCCAATTGTT+TGG + Chr2:41605257-41605276 None:intergenic 35.0%
! GATAGTTCTACAACAAATGG+TGG - Chr2:41606930-41606949 MsG0280008923.01.T01:CDS 35.0%
! TTAAAACCTTGTTTGTGGCA+GGG - Chr2:41605375-41605394 MsG0280008923.01.T01:intron 35.0%
! TTCGATTTTACTCTCACCAT+TGG - Chr2:41607177-41607196 MsG0280008923.01.T01:CDS 35.0%
! TTTAAAACCTTGTTTGTGGC+AGG - Chr2:41605374-41605393 MsG0280008923.01.T01:intron 35.0%
! TTTTTGCCGACAACATTCAA+AGG - Chr2:41604508-41604527 MsG0280008923.01.T01:intron 35.0%
!! ACTTATGACAGGAAGTATCA+TGG + Chr2:41603302-41603321 None:intergenic 35.0%
!! AGAACAGCTTTAAAAGGAGA+GGG + Chr2:41604193-41604212 None:intergenic 35.0%
!! GGCAAATTCATGGTTGATTT+TGG + Chr2:41607035-41607054 None:intergenic 35.0%
!! TAGAACAGCTTTAAAAGGAG+AGG + Chr2:41604194-41604213 None:intergenic 35.0%
!! TATCTCCTAGCAATTTTAGC+TGG + Chr2:41602429-41602448 None:intergenic 35.0%
!! TCAAGTATTCTTTTTCGCCA+TGG + Chr2:41602117-41602136 None:intergenic 35.0%
!!! ATCTCCTAGCAATTTTAGCT+GGG + Chr2:41602428-41602447 None:intergenic 35.0%
!!! CTTGTTTTATACAAGCTGCT+TGG - Chr2:41607213-41607232 MsG0280008923.01.T01:CDS 35.0%
!!! GCTACGTTCTTTTTTGCATA+AGG + Chr2:41603053-41603072 None:intergenic 35.0%
!!! TACCCTGTTTTTTACACAAG+AGG - Chr2:41603771-41603790 MsG0280008923.01.T01:intron 35.0%
AATAATCAAAGCAACCGGAG+TGG - Chr2:41602630-41602649 MsG0280008923.01.T01:CDS 40.0%
ACACAAAAGGTGGAAAAACC+GGG - Chr2:41607661-41607680 MsG0280008923.01.T01:five_prime_UTR 40.0%
AGAAGGGAACCTGAATTACA+TGG + Chr2:41606776-41606795 None:intergenic 40.0%
AGGTAGAGAAAGCAATTGTG+AGG + Chr2:41603076-41603095 None:intergenic 40.0%
AGTCTTAAGACAGGAAGAAG+AGG + Chr2:41602265-41602284 None:intergenic 40.0%
AGTGGTTACAAAGACTGCTT+GGG - Chr2:41602648-41602667 MsG0280008923.01.T01:CDS 40.0%
AGTTGAAGACGGCAAATTCA+TGG + Chr2:41607045-41607064 None:intergenic 40.0%
ATAAACCAGATGAGCATCTG+CGG + Chr2:41602498-41602517 None:intergenic 40.0%
ATAGAGAAAAAAGGGCAACC+CGG - Chr2:41603679-41603698 MsG0280008923.01.T01:intron 40.0%
ATATAGCCTAAAAGCCTCAC+TGG + Chr2:41606023-41606042 None:intergenic 40.0%
ATCATCCATTTGCGAGAAGA+AGG + Chr2:41606793-41606812 None:intergenic 40.0%
ATCTCAAATCTTCAGGGAGT+TGG + Chr2:41606191-41606210 None:intergenic 40.0%
ATGGATAGAAAGGATGGAGA+AGG + Chr2:41605149-41605168 None:intergenic 40.0%
ATGTATTATTGTGGAGGTCG+AGG - Chr2:41604876-41604895 MsG0280008923.01.T01:intron 40.0%
CACAAAAACGGTGACGTTTA+AGG - Chr2:41604130-41604149 MsG0280008923.01.T01:intron 40.0%
CACATTCACACCCAAACAAT+TGG - Chr2:41605243-41605262 MsG0280008923.01.T01:intron 40.0%
CAGCCTCTTGTGTAAAAAAC+AGG + Chr2:41603777-41603796 None:intergenic 40.0%
CCAAGGTTTCTGTAATCATC+AGG - Chr2:41604369-41604388 MsG0280008923.01.T01:intron 40.0%
CCACTAATCATCATCTGCTT+CGG + Chr2:41607492-41607511 None:intergenic 40.0%
CCTGATGATTACAGAAACCT+TGG + Chr2:41604372-41604391 None:intergenic 40.0%
CGAAAAAGAATACTTGACCC+TGG - Chr2:41602120-41602139 MsG0280008923.01.T01:CDS 40.0%
CTACAGACAATACCACTTCA+AGG + Chr2:41604075-41604094 None:intergenic 40.0%
CTATAATGAAATGCGGTGTG+AGG - Chr2:41601702-41601721 MsG0280008923.01.T01:three_prime_UTR 40.0%
CTCAAACCCTGTTTGTTTGA+AGG - Chr2:41607792-41607811 MsG0280008923.01.T01:five_prime_UTR 40.0%
CTCAGGCTAAATTGAACCTT+GGG - Chr2:41607360-41607379 MsG0280008923.01.T01:CDS 40.0%
CTTCAAACAAACAGGGTTTG+AGG + Chr2:41607794-41607813 None:intergenic 40.0%
GAACCTGAATTACATGGGAA+GGG + Chr2:41606770-41606789 None:intergenic 40.0%
GAAGGGAACCTGAATTACAT+GGG + Chr2:41606775-41606794 None:intergenic 40.0%
GAATGGAAAGCTATGAAGCA+TGG + Chr2:41602914-41602933 None:intergenic 40.0%
GATGATTAGTGGCTCTTTAG+AGG - Chr2:41607500-41607519 MsG0280008923.01.T01:CDS 40.0%
GCAGTGATGTATTATTGTGG+AGG - Chr2:41604870-41604889 MsG0280008923.01.T01:intron 40.0%
GCAGTTTAGCAGGGATAAAA+TGG + Chr2:41605168-41605187 None:intergenic 40.0%
GCTATTGTGATTGCCATCTT+GGG - Chr2:41605580-41605599 MsG0280008923.01.T01:intron 40.0%
GCTGTGTACAATACACCAAA+TGG + Chr2:41603749-41603768 None:intergenic 40.0%
GGAGGTCGAGGAAATAATAT+AGG - Chr2:41604888-41604907 MsG0280008923.01.T01:intron 40.0%
GGTAGAGAAAGCAATTGTGA+GGG + Chr2:41603075-41603094 None:intergenic 40.0%
GGTTTATCATACCTGCTACA+CGG - Chr2:41602511-41602530 MsG0280008923.01.T01:CDS 40.0%
GTACAGACAAGAATAACTCG+CGG - Chr2:41603595-41603614 MsG0280008923.01.T01:intron 40.0%
GTAGATGAGGAATATCCTAC+TGG - Chr2:41607326-41607345 MsG0280008923.01.T01:CDS 40.0%
GTAGCTGTTTGCCACAAAAA+CGG - Chr2:41604118-41604137 MsG0280008923.01.T01:intron 40.0%
GTATCTTCTCTAAGCACTCT+AGG - Chr2:41606843-41606862 MsG0280008923.01.T01:intron 40.0%
GTCTAACAAGGTCTAAGCAT+AGG + Chr2:41606323-41606342 None:intergenic 40.0%
GTCTTAAGACAGGAAGAAGA+GGG + Chr2:41602264-41602283 None:intergenic 40.0%
GTGTACAATACACCAAATGG+TGG + Chr2:41603746-41603765 None:intergenic 40.0%
GTTCCTTCACCAAAATTAGG+TGG - Chr2:41604819-41604838 MsG0280008923.01.T01:intron 40.0%
TAACAAGGTCTAAGCATAGG+TGG + Chr2:41606320-41606339 None:intergenic 40.0%
TACAAAACAGAATGCCAGTG+AGG - Chr2:41606006-41606025 MsG0280008923.01.T01:intron 40.0%
TACTTCTTCAGGACTACATG+CGG + Chr2:41603993-41604012 None:intergenic 40.0%
TCAGGCTAAATTGAACCTTG+GGG - Chr2:41607361-41607380 MsG0280008923.01.T01:CDS 40.0%
TCATCCATTTGCGAGAAGAA+GGG + Chr2:41606792-41606811 None:intergenic 40.0%
TCATTTGATTGGGAACATGC+AGG - Chr2:41605618-41605637 MsG0280008923.01.T01:intron 40.0%
TCTCAGGCTAAATTGAACCT+TGG - Chr2:41607359-41607378 MsG0280008923.01.T01:CDS 40.0%
TCTTTCGTTAGATGAGACAG+TGG - Chr2:41607286-41607305 MsG0280008923.01.T01:CDS 40.0%
TGAATTTGCCGTCTTCAACT+AGG - Chr2:41607045-41607064 MsG0280008923.01.T01:CDS 40.0%
TGCAATCTTCATCTGAGAGT+AGG - Chr2:41607740-41607759 MsG0280008923.01.T01:five_prime_UTR 40.0%
TGCTATTGTGATTGCCATCT+TGG - Chr2:41605579-41605598 MsG0280008923.01.T01:intron 40.0%
TGGATAGAAAGGATGGAGAA+GGG + Chr2:41605148-41605167 None:intergenic 40.0%
TGGTGAGGAACTACTTTCTT+GGG - Chr2:41607001-41607020 MsG0280008923.01.T01:CDS 40.0%
TGTTAGGTCAGTCTTAAGAC+AGG + Chr2:41602274-41602293 None:intergenic 40.0%
TTAACACAATCTGGCTACCA+GGG + Chr2:41602140-41602159 None:intergenic 40.0%
TTAACCGTCCTAGTTGAAGA+CGG + Chr2:41607056-41607075 None:intergenic 40.0%
TTATTGTTGTGATCGGTCTG+AGG + Chr2:41602540-41602559 None:intergenic 40.0%
TTCTTGATGCGATATGTGAG+CGG - Chr2:41606817-41606836 MsG0280008923.01.T01:intron 40.0%
TTGGATATCACGACGAAGAT+CGG + Chr2:41606295-41606314 None:intergenic 40.0%
TTTAAAAGGAGAGGGATACC+AGG + Chr2:41604185-41604204 None:intergenic 40.0%
TTTAACACAATCTGGCTACC+AGG + Chr2:41602141-41602160 None:intergenic 40.0%
TTTCCCTTCCCATGTAATTC+AGG - Chr2:41606764-41606783 MsG0280008923.01.T01:intron 40.0%
! AAGCAAGTATTGTAACCCCA+AGG + Chr2:41607379-41607398 None:intergenic 40.0%
! CTCTATTTTCATGGTAGGGA+GGG + Chr2:41603868-41603887 None:intergenic 40.0%
! CTTTGGCCTTCAAACAAACA+GGG + Chr2:41607801-41607820 None:intergenic 40.0%
! GACTTTGTAATGGAATGCCA+AGG - Chr2:41603637-41603656 MsG0280008923.01.T01:intron 40.0%
! GATGTTCTATTCAGTGTCGA+TGG - Chr2:41607551-41607570 MsG0280008923.01.T01:intron 40.0%
! GATTTTACTCTCACCATTGG+AGG - Chr2:41607180-41607199 MsG0280008923.01.T01:CDS 40.0%
! TATAAATGGCTTGCAACTCG+CGG - Chr2:41606234-41606253 MsG0280008923.01.T01:intron 40.0%
! TCATGGTAGGCTTTTAACCT+TGG + Chr2:41603657-41603676 None:intergenic 40.0%
! TCGATGGTGGTTCTATCTAT+AGG - Chr2:41607567-41607586 MsG0280008923.01.T01:intron 40.0%
! TCTATTTTCATGGTAGGGAG+GGG + Chr2:41603867-41603886 None:intergenic 40.0%
! TCTCTATTTTCATGGTAGGG+AGG + Chr2:41603869-41603888 None:intergenic 40.0%
! TCTTTGGCCTTCAAACAAAC+AGG + Chr2:41607802-41607821 None:intergenic 40.0%
! TGTCCAACAACTCCTTTTGA+TGG + Chr2:41604028-41604047 None:intergenic 40.0%
! TTGAGACCTGGAGATTTTTG+TGG - Chr2:41606981-41607000 MsG0280008923.01.T01:CDS 40.0%
! TTTTGTGGCAAACAGCTACA+AGG + Chr2:41604117-41604136 None:intergenic 40.0%
!! AAGTTGGTGGTAAGAGTGAA+TGG - Chr2:41605051-41605070 MsG0280008923.01.T01:intron 40.0%
!! CTTAAACGTCACCGTTTTTG+TGG + Chr2:41604132-41604151 None:intergenic 40.0%
!! CTTGAAGCACCACCTAATTT+TGG + Chr2:41604831-41604850 None:intergenic 40.0%
!! CTTGGCGTCGATATAAGAAA+AGG - Chr2:41607231-41607250 MsG0280008923.01.T01:CDS 40.0%
!! TTGAGTTGAAGAAACCAGTC+CGG + Chr2:41606956-41606975 None:intergenic 40.0%
!!! CTGATTTGGGTTGACTCTTT+TGG - Chr2:41606080-41606099 MsG0280008923.01.T01:intron 40.0%
AAAGGATGGAGAAGGGTTGA+GGG + Chr2:41605141-41605160 None:intergenic 45.0%
ACAACTCAGGCAGTTTAGCA+GGG + Chr2:41605177-41605196 None:intergenic 45.0%
ACTCGCTTCAAGAGAACTCT+TGG - Chr2:41604981-41605000 MsG0280008923.01.T01:intron 45.0%
AGCAGTCTTTGTAACCACTC+CGG + Chr2:41602647-41602666 None:intergenic 45.0%
AGCAGTGCTGTAGTAGTACT+TGG + Chr2:41603529-41603548 None:intergenic 45.0%
AGGATGTCTGCCAAAGATCT+CGG - Chr2:41607251-41607270 MsG0280008923.01.T01:CDS 45.0%
ATATCACGACGAAGATCGGT+TGG + Chr2:41606291-41606310 None:intergenic 45.0%
ATTGAAGCTCCTGCATATGC+AGG - Chr2:41603705-41603724 MsG0280008923.01.T01:intron 45.0%
ATTGTCCAAACAACAGGAGG+AGG - Chr2:41602231-41602250 MsG0280008923.01.T01:CDS 45.0%
CAAACAACAGGAGGAGGAAA+AGG - Chr2:41602237-41602256 MsG0280008923.01.T01:CDS 45.0%
CAGGAAGGAATCAGAACACT+CGG + Chr2:41604166-41604185 None:intergenic 45.0%
CCACCATCAAAAGGAGTTGT+TGG - Chr2:41604022-41604041 MsG0280008923.01.T01:intron 45.0%
CCGAAGCAGATGATGATTAG+TGG - Chr2:41607489-41607508 MsG0280008923.01.T01:CDS 45.0%
CCTATTGTCCAAACAACAGG+AGG - Chr2:41602228-41602247 MsG0280008923.01.T01:CDS 45.0%
CTAATCATCATCTGCTTCGG+TGG + Chr2:41607489-41607508 None:intergenic 45.0%
CTATAAGGCTTGAAGAGTGG+AGG - Chr2:41606127-41606146 MsG0280008923.01.T01:intron 45.0%
CTGCCTATTGTCCAAACAAC+AGG - Chr2:41602225-41602244 MsG0280008923.01.T01:CDS 45.0%
GACAAGCATCTCTCTTCGAA+GGG - Chr2:41603936-41603955 MsG0280008923.01.T01:CDS 45.0%
GACGGTTAAAGCCTTAAGTG+AGG - Chr2:41607067-41607086 MsG0280008923.01.T01:CDS 45.0%
GAGTGGTTACAAAGACTGCT+TGG - Chr2:41602647-41602666 MsG0280008923.01.T01:CDS 45.0%
GGAACCTGAATTACATGGGA+AGG + Chr2:41606771-41606790 None:intergenic 45.0%
GGGTTACAATACTTGCTTCG+AGG - Chr2:41607381-41607400 MsG0280008923.01.T01:CDS 45.0%
GGTTGGCAATGAACGTAGAA+TGG + Chr2:41606274-41606293 None:intergenic 45.0%
GTGGTGAGGAACTACTTTCT+TGG - Chr2:41607000-41607019 MsG0280008923.01.T01:CDS 45.0%
GTTCTACAACAAATGGTGGC+CGG - Chr2:41606934-41606953 MsG0280008923.01.T01:CDS 45.0%
GTTGTTGTCATGTGACCGAA+AGG + Chr2:41603822-41603841 None:intergenic 45.0%
TATGAAGCATGGACACTCCT+CGG + Chr2:41602903-41602922 None:intergenic 45.0%
TCCTCACCACAAAAATCTCC+AGG + Chr2:41606990-41607009 None:intergenic 45.0%
TCTTCAGGCTTCAGTAGCTT+AGG + Chr2:41607455-41607474 None:intergenic 45.0%
TGAGACGAGTTTGAACCAGT+AGG + Chr2:41607344-41607363 None:intergenic 45.0%
TGGACCCAGCTAAAATTGCT+AGG - Chr2:41602421-41602440 MsG0280008923.01.T01:CDS 45.0%
TGGCAGAAGAAAAGTTGTCC+TGG - Chr2:41605263-41605282 MsG0280008923.01.T01:intron 45.0%
TGGTGATTGATGCACAACTC+AGG + Chr2:41605190-41605209 None:intergenic 45.0%
TTCGCTCAAACCGAGATCTT+TGG + Chr2:41607264-41607283 None:intergenic 45.0%
TTGAAGCTCCTGCATATGCA+GGG - Chr2:41603706-41603725 MsG0280008923.01.T01:intron 45.0%
TTTGCCGTCTTCAACTAGGA+CGG - Chr2:41607049-41607068 MsG0280008923.01.T01:CDS 45.0%
TTTGCTGCTAACACACGAAG+AGG - Chr2:41607404-41607423 MsG0280008923.01.T01:CDS 45.0%
! ACCTGGAGATTTTTGTGGTG+AGG - Chr2:41606986-41607005 MsG0280008923.01.T01:CDS 45.0%
! AGAATGCCAGTGAGGCTTTT+AGG - Chr2:41606014-41606033 MsG0280008923.01.T01:intron 45.0%
! CCAACAACTCCTTTTGATGG+TGG + Chr2:41604025-41604044 None:intergenic 45.0%
! CCTCCTGTTGTTTGGACAAT+AGG + Chr2:41602231-41602250 None:intergenic 45.0%
! CTTTTCCTCCTCCTGTTGTT+TGG + Chr2:41602239-41602258 None:intergenic 45.0%
! GATTGCTGCTCTGCAGTTTT+GGG + Chr2:41604053-41604072 None:intergenic 45.0%
! TTACACAAGAGGCTGTTTCC+AGG - Chr2:41603782-41603801 MsG0280008923.01.T01:intron 45.0%
! TTTGTTGGGGGCAGGTTTTA+GGG - Chr2:41602978-41602997 MsG0280008923.01.T01:intron 45.0%
!! ACTCGCGGTTTTGTCAGTTT+TGG - Chr2:41603610-41603629 MsG0280008923.01.T01:intron 45.0%
!! ATTTGTTGGGGGCAGGTTTT+AGG - Chr2:41602977-41602996 MsG0280008923.01.T01:intron 45.0%
!! GCACCACCTAATTTTGGTGA+AGG + Chr2:41604825-41604844 None:intergenic 45.0%
!! GTTCTATTCAGTGTCGATGG+TGG - Chr2:41607554-41607573 MsG0280008923.01.T01:intron 45.0%
!! TACTGGTTCAAACTCGTCTC+AGG - Chr2:41607343-41607362 MsG0280008923.01.T01:CDS 45.0%
!! TGGAAGGGGTGAACTTGTTA+TGG - Chr2:41602401-41602420 MsG0280008923.01.T01:CDS 45.0%
!! ATATTAGTAATATTATTATT+TGG - Chr2:41605494-41605513 MsG0280008923.01.T01:intron 5.0%
!! TTATAAAAAAAATAAAAAAC+AGG + Chr2:41606360-41606379 None:intergenic 5.0%
AAACACGGGCATACGAGTCA+AGG + Chr2:41607617-41607636 None:intergenic 50.0%
AAAGGAGAGGGATACCAGGA+AGG + Chr2:41604181-41604200 None:intergenic 50.0%
AAGAGACACAGAGGAGTGGA+TGG - Chr2:41606158-41606177 MsG0280008923.01.T01:intron 50.0%
ACGGAGAGAGAAGCAGAGAA+AGG + Chr2:41601793-41601812 None:intergenic 50.0%
ACTCTCACCATTGGAGGACT+TGG - Chr2:41607186-41607205 MsG0280008923.01.T01:CDS 50.0%
AGAGACACAGAGGAGTGGAT+GGG - Chr2:41606159-41606178 MsG0280008923.01.T01:intron 50.0%
AGCTCTCGGGTATTTGGAAG+GGG - Chr2:41602387-41602406 MsG0280008923.01.T01:CDS 50.0%
AGGCACCTACATTGTTCGTG+AGG - Chr2:41606863-41606882 MsG0280008923.01.T01:intron 50.0%
ATCGGCAATCGTGCGAAGAA+AGG + Chr2:41602313-41602332 None:intergenic 50.0%
ATCTACATGTGCTCTCTCGC+TGG + Chr2:41607312-41607331 None:intergenic 50.0%
ATGCAGGAGCTTCAATGCAC+CGG + Chr2:41603701-41603720 None:intergenic 50.0%
CAACTTTACCAGTTGCGCCA+AGG - Chr2:41603838-41603857 MsG0280008923.01.T01:intron 50.0%
CACAACTCAGGCAGTTTAGC+AGG + Chr2:41605178-41605197 None:intergenic 50.0%
CAGAGCAGCAATCCTTGAAG+TGG - Chr2:41604060-41604079 MsG0280008923.01.T01:intron 50.0%
CAGCTCTCGGGTATTTGGAA+GGG - Chr2:41602386-41602405 MsG0280008923.01.T01:CDS 50.0%
CGAGTGTTCTGATTCCTTCC+TGG - Chr2:41604164-41604183 MsG0280008923.01.T01:intron 50.0%
CTCTCACCATTGGAGGACTT+GGG - Chr2:41607187-41607206 MsG0280008923.01.T01:CDS 50.0%
CTGTGTCCGTGCTTCATAGA+TGG + Chr2:41602741-41602760 None:intergenic 50.0%
CTTCCAAATACCCGAGAGCT+GGG + Chr2:41602387-41602406 None:intergenic 50.0%
GAAAGGATGGAGAAGGGTTG+AGG + Chr2:41605142-41605161 None:intergenic 50.0%
GACTTGAACCCGTGACCTTT+CGG - Chr2:41603804-41603823 MsG0280008923.01.T01:intron 50.0%
GCAAACAGCTACAAGGAAGG+TGG + Chr2:41604110-41604129 None:intergenic 50.0%
GCTAAAGCGAAGAGACACAG+AGG - Chr2:41606149-41606168 MsG0280008923.01.T01:intron 50.0%
GGACAAGCATCTCTCTTCGA+AGG - Chr2:41603935-41603954 MsG0280008923.01.T01:CDS 50.0%
GGCACCTACATTGTTCGTGA+GGG - Chr2:41606864-41606883 MsG0280008923.01.T01:intron 50.0%
GGTTCCCTTCTTCTCGCAAA+TGG - Chr2:41606785-41606804 MsG0280008923.01.T01:intron 50.0%
GTCACCCTCACGAACAATGT+AGG + Chr2:41606871-41606890 None:intergenic 50.0%
GTCATGTGACCGAAAGGTCA+CGG + Chr2:41603816-41603835 None:intergenic 50.0%
GTGGAGAAGTCAGGTTCTTC+AGG + Chr2:41607470-41607489 None:intergenic 50.0%
GTGGCAAACAGCTACAAGGA+AGG + Chr2:41604113-41604132 None:intergenic 50.0%
GTTACAAAGACTGCTTGGGC+AGG - Chr2:41602652-41602671 MsG0280008923.01.T01:CDS 50.0%
TAACTATGGTCTCTGGGCCA+AGG - Chr2:41604352-41604371 MsG0280008923.01.T01:intron 50.0%
TCATGTGACCGAAAGGTCAC+GGG + Chr2:41603815-41603834 None:intergenic 50.0%
TGAAATGCGGTGTGAGGGTT+TGG - Chr2:41601708-41601727 MsG0280008923.01.T01:three_prime_UTR 50.0%
! CGAGAGAGCACATGTAGATG+AGG - Chr2:41607313-41607332 MsG0280008923.01.T01:CDS 50.0%
! GGATTGCTGCTCTGCAGTTT+TGG + Chr2:41604054-41604073 None:intergenic 50.0%
! TGTGCTGCAGCTTTTTGCTG+TGG + Chr2:41607154-41607173 None:intergenic 50.0%
!! GTCTCTAATTTGTTGGGGGC+AGG - Chr2:41602970-41602989 MsG0280008923.01.T01:intron 50.0%
!! TTGTTGGGGGCAGGTTTTAG+GGG - Chr2:41602979-41602998 MsG0280008923.01.T01:intron 50.0%
AAGGTCACGGGTTCAAGTCC+TGG + Chr2:41603803-41603822 None:intergenic 55.0%
ACAACAAATGGTGGCCGGAC+TGG - Chr2:41606939-41606958 MsG0280008923.01.T01:CDS 55.0%
ACACGACACATGTCCGACAC+CGG - Chr2:41602865-41602884 MsG0280008923.01.T01:intron 55.0%
AGCGAAGAGACACAGAGGAG+TGG - Chr2:41606154-41606173 MsG0280008923.01.T01:intron 55.0%
AGGTGGAAAAACCGGGCTGA+TGG - Chr2:41607668-41607687 MsG0280008923.01.T01:five_prime_UTR 55.0%
ATGGTAGGGAGGGGTAACCT+TGG + Chr2:41603858-41603877 None:intergenic 55.0%
CAGATGAGCATCTGCGGTAG+AGG + Chr2:41602492-41602511 None:intergenic 55.0%
CCACTTCCCTGCCACAAACA+AGG + Chr2:41605384-41605403 None:intergenic 55.0%
CCAGCTCTCGGGTATTTGGA+AGG - Chr2:41602385-41602404 MsG0280008923.01.T01:CDS 55.0%
CCTTCCAAATACCCGAGAGC+TGG + Chr2:41602388-41602407 None:intergenic 55.0%
CTCTACCGCAGATGCTCATC+TGG - Chr2:41602490-41602509 MsG0280008923.01.T01:CDS 55.0%
GATTAGGCATGTCCCGGTGT+CGG + Chr2:41602881-41602900 None:intergenic 55.0%
GCATGGACACTCCTCGGATT+AGG + Chr2:41602897-41602916 None:intergenic 55.0%
GCCATGGTTCATGCTCCTCT+GGG + Chr2:41602101-41602120 None:intergenic 55.0%
GCTACAAGGAAGGTGGCACA+CGG + Chr2:41604103-41604122 None:intergenic 55.0%
GGTCTAAGCATAGGTGGCGT+TGG + Chr2:41606314-41606333 None:intergenic 55.0%
GGTGGAAAAACCGGGCTGAT+GGG - Chr2:41607669-41607688 MsG0280008923.01.T01:five_prime_UTR 55.0%
GTCAGTGTCCATGTCGTGTC+TGG + Chr2:41602767-41602786 None:intergenic 55.0%
GTGGAAAAACCGGGCTGATG+GGG - Chr2:41607670-41607689 MsG0280008923.01.T01:five_prime_UTR 55.0%
TCTGCTTCGGTGGAGAAGTC+AGG + Chr2:41607479-41607498 None:intergenic 55.0%
TGATGCGATATGTGAGCGGC+TGG - Chr2:41606821-41606840 MsG0280008923.01.T01:intron 55.0%
TGCAGGAGCTTCAATGCACC+GGG + Chr2:41603700-41603719 None:intergenic 55.0%
TGGAAAAACCGGGCTGATGG+GGG - Chr2:41607671-41607690 MsG0280008923.01.T01:five_prime_UTR 55.0%
! CCTTGTTTGTGGCAGGGAAG+TGG - Chr2:41605381-41605400 MsG0280008923.01.T01:intron 55.0%
! TCCCAGAGGAGCATGAACCA+TGG - Chr2:41602097-41602116 MsG0280008923.01.T01:CDS 55.0%
! TCCTCGGATTAGGCATGTCC+CGG + Chr2:41602887-41602906 None:intergenic 55.0%
!! GCTGCAGCTTTTTGCTGTGG+AGG + Chr2:41607151-41607170 None:intergenic 55.0%
AAGCGGCCCAAGTCCTCCAA+TGG + Chr2:41607196-41607215 None:intergenic 60.0%
ACCGGGACATGCCTAATCCG+AGG - Chr2:41602883-41602902 MsG0280008923.01.T01:intron 60.0%
AGAGCTGGGCGCGACATATG+CGG + Chr2:41602373-41602392 None:intergenic 60.0%
AGGGGTAACCTTGGCGCAAC+TGG + Chr2:41603849-41603868 None:intergenic 60.0%
ATATGTCGCGCCCAGCTCTC+GGG - Chr2:41602374-41602393 MsG0280008923.01.T01:CDS 60.0%
CACAGACGCCAGACACGACA+TGG - Chr2:41602756-41602775 MsG0280008923.01.T01:CDS 60.0%
CACGACACATGTCCGACACC+GGG - Chr2:41602866-41602885 MsG0280008923.01.T01:intron 60.0%
CATATGCAGGGTCCGGGAAG+GGG - Chr2:41603718-41603737 MsG0280008923.01.T01:intron 60.0%
CATATGTCGCGCCCAGCTCT+CGG - Chr2:41602373-41602392 MsG0280008923.01.T01:CDS 60.0%
CGCCATGGTTCATGCTCCTC+TGG + Chr2:41602102-41602121 None:intergenic 60.0%
CGGGCATACGAGTCAAGGAG+AGG + Chr2:41607612-41607631 None:intergenic 60.0%
CTCCTGCATATGCAGGGTCC+GGG - Chr2:41603712-41603731 MsG0280008923.01.T01:intron 60.0%
GCATATGCAGGGTCCGGGAA+GGG - Chr2:41603717-41603736 MsG0280008923.01.T01:intron 60.0%
GCTCCTGCATATGCAGGGTC+CGG - Chr2:41603711-41603730 MsG0280008923.01.T01:intron 60.0%
GGAAAAACCGGGCTGATGGG+GGG - Chr2:41607672-41607691 MsG0280008923.01.T01:five_prime_UTR 60.0%
TGCATATGCAGGGTCCGGGA+AGG - Chr2:41603716-41603735 MsG0280008923.01.T01:intron 60.0%
TTCCCGGACCCTGCATATGC+AGG + Chr2:41603717-41603736 None:intergenic 60.0%
! CAAATGGTGGGACCCCTTCC+CGG + Chr2:41603733-41603752 None:intergenic 60.0%
! GTCTGAGGTGTCCGTGTAGC+AGG + Chr2:41602525-41602544 None:intergenic 60.0%
!!! GGCAGGTTTTAGGGGCATCG+TGG - Chr2:41602987-41603006 MsG0280008923.01.T01:intron 60.0%
ACCATCACCCCCCATCAGCC+CGG + Chr2:41607682-41607701 None:intergenic 65.0%
CGGGAAGGGGTCCCACCATT+TGG - Chr2:41603731-41603750 MsG0280008923.01.T01:intron 65.0%
GCGCCCAGCTCTCGGGTATT+TGG - Chr2:41602381-41602400 MsG0280008923.01.T01:CDS 65.0%
GGTGGGGGCTGCAGCAATTG+AGG - Chr2:41603272-41603291 MsG0280008923.01.T01:CDS 65.0%
!! ATGGGGGGTGATGGTGGTGG+TGG - Chr2:41607687-41607706 MsG0280008923.01.T01:five_prime_UTR 65.0%
!! CTGATGGGGGGTGATGGTGG+TGG - Chr2:41607684-41607703 MsG0280008923.01.T01:five_prime_UTR 65.0%
!! TGGGGGGTGATGGTGGTGGT+GGG - Chr2:41607688-41607707 MsG0280008923.01.T01:five_prime_UTR 65.0%
ACCGGGCTGATGGGGGGTGA+TGG - Chr2:41607678-41607697 MsG0280008923.01.T01:five_prime_UTR 70.0%
! GGGCTGATGGGGGGTGATGG+TGG - Chr2:41607681-41607700 MsG0280008923.01.T01:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 41601675 41607893 41601675 ID=MsG0280008923.01;Name=MsG0280008923.01
Chr2 mRNA 41601675 41607893 41601675 ID=MsG0280008923.01.T01;Parent=MsG0280008923.01;Name=MsG0280008923.01.T01;_AED=0.36;_eAED=0.36;_QI=239|0.8|0.66|1|0.8|0.83|6|385|712
Chr2 exon 41607626 41607893 41607626 ID=MsG0280008923.01.T01:exon:29732;Parent=MsG0280008923.01.T01
Chr2 exon 41606888 41607536 41606888 ID=MsG0280008923.01.T01:exon:29733;Parent=MsG0280008923.01.T01
Chr2 exon 41606275 41606663 41606275 ID=MsG0280008923.01.T01:exon:29734;Parent=MsG0280008923.01.T01
Chr2 exon 41603929 41604040 41603929 ID=MsG0280008923.01.T01:exon:29735;Parent=MsG0280008923.01.T01
Chr2 exon 41603224 41603460 41603224 ID=MsG0280008923.01.T01:exon:29736;Parent=MsG0280008923.01.T01
Chr2 exon 41601675 41602782 41601675 ID=MsG0280008923.01.T01:exon:29737;Parent=MsG0280008923.01.T01
Chr2 five_prime_UTR 41607655 41607893 41607655 ID=MsG0280008923.01.T01:five_prime_utr;Parent=MsG0280008923.01.T01
Chr2 CDS 41607626 41607654 41607626 ID=MsG0280008923.01.T01:cds;Parent=MsG0280008923.01.T01
Chr2 CDS 41606888 41607536 41606888 ID=MsG0280008923.01.T01:cds;Parent=MsG0280008923.01.T01
Chr2 CDS 41606275 41606663 41606275 ID=MsG0280008923.01.T01:cds;Parent=MsG0280008923.01.T01
Chr2 CDS 41603929 41604040 41603929 ID=MsG0280008923.01.T01:cds;Parent=MsG0280008923.01.T01
Chr2 CDS 41603224 41603460 41603224 ID=MsG0280008923.01.T01:cds;Parent=MsG0280008923.01.T01
Chr2 CDS 41602060 41602782 41602060 ID=MsG0280008923.01.T01:cds;Parent=MsG0280008923.01.T01
Chr2 three_prime_UTR 41601675 41602059 41601675 ID=MsG0280008923.01.T01:three_prime_utr;Parent=MsG0280008923.01.T01
Gene Sequence

>MsG0280008923.01.T01

ATGGAGTTCAAAAAGGCCAAACTTGTAAGATTCTACTCGGATGTGAAAAAGGTTAAAGAAGAAGGAACAAAGGTATCAAAATCATACAAAGTATTCCCAGAGGAGCATGAACCATGGCGAAAAAGAATACTTGACCCTGGTAGCCAGATTGTGTTAAAATGGAATCGTCTCTTTATAGTTTCTTGCTTGTTAGCTCTTTTTGTTGATCCATTGTACTTTTATCTGCCTATTGTCCAAACAACAGGAGGAGGAAAAGGACCCTCTTCTTCCTGTCTTAAGACTGACCTAACATTACAGATTCTAGTCACCTTTCTTCGCACGATTGCCGATGTCTTTTATCTATTGCATCTCATTATTAAGTTTAGGACCGCATATGTCGCGCCCAGCTCTCGGGTATTTGGAAGGGGTGAACTTGTTATGGACCCAGCTAAAATTGCTAGGAGATATATCAGATCTCACTTCTTTATTGATTTTATTGCAACGCTACCTCTACCGCAGATGCTCATCTGGTTTATCATACCTGCTACACGGACACCTCAGACCGATCACAACAATAATGCTCTTGCATTCATTGTTATTGCTTCAATATCTTCCGAGATTATATTTGATTTTTCCGTTAAGTTCGCAAATAATCAAAGCAACCGGAGTGGTTACAAAGACTGCTTGGGCAGGAGCTGCGAGTGTCCATGCTTCATAGCTTTCCATTCATTTAATGCTACTTTTCTTTTCAAACTTATTCATATGTCTCTAATTTGTTGGGGGCAGGTTTTAGGGGCATCGTGGTATCTTCTATCTGTTGACCGTTATACTACTTGTTGGAAATCCTTATGCAAAAAAGAACGTAGCCCTCACAATTGCTTTCTCTACCTAGACTGCAGTTCTTTGAATAGTGATATGCGCAAGATATGGTTAAATACTACAGATGTGTTTAACAGATGTGACCCCAGTAAAGATGACATTCAGTTCAAATATGGATTATTCGAAAATGCATTAAAAAAGCATGTTGTCTCTTCAAACTTCATATCAAAATACTTATATTGTTTATGGTGGGGGCTGCAGCAATTGAGTTCTTATGGACAGAACCTAGATACGACCACATTTATTGGAGAAACGTCATTTGCTATTGTGATTGCCATCTTGGGACTTGTATTATTTGCTCATTTGATTGGGAACATGCAGACATATTTACAATCAATTACTATAAGGCTTGAAGAGTGGAGGCTAAAGCGAAGAGACACAGAGGAGTGGATGGGACATCGCCAACTCCCTGAAGATTTGAGATTTCGTGTTAGACGATTTGTACAATATAAATGGCTTGCAACTCGCGGTGTTGATGAAGAAACCATTCTACGTTCATTGCCAACCGATCTTCGTCGTGATATCCAACGCCACCTATGCTTAGACCTTGTTAGACGAGTTCCCTTCTTCTCGCAAATGGATGATCAGCTTCTTGATGCGATATGTGAGCGGCTGGTATCTTCTCTAAGCACTCTAGGCACCTACATTGTTCGTGAGGGTGACCCTGTAACTGAAATGTTGTTTATCATTAGAGGCAGACTAGATAGTTCTACAACAAATGGTGGCCGGACTGGTTTCTTCAACTCAATCATATTGAGACCTGGAGATTTTTGTGGTGAGGAACTACTTTCTTGGGCACTACTCCCAAAATCAACCATGAATTTGCCGTCTTCAACTAGGACGGTTAAAGCCTTAAGTGAGGTTGAAGCTTTTGCTCTTCGAGCTGAAGACCTAAAGTTTGTCGCTAATCAATTTAGGCGCCTCCACAGCAAAAAGCTGCAGCACACCTTTCGATTTTACTCTCACCATTGGAGGACTTGGGCCGCTTGTTTTATACAAGCTGCTTGGCGTCGATATAAGAAAAGGATGTCTGCCAAAGATCTCGGTTTGAGCGAATCTCTTTCGTTAGATGAGACAGTGGCCAGCGAGAGAGCACATGTAGATGAGGAATATCCTACTGGTTCAAACTCGTCTCAGGCTAAATTGAACCTTGGGGTTACAATACTTGCTTCGAGGTTTGCTGCTAACACACGAAGAGGAGCACTAAAGATGAAAGATGATTTGCCTAAGCTACTGAAGCCTGAAGAACCTGACTTCTCCACCGAAGCAGATGATGATTAG
Protein sequence

>MsG0280008923.01.T01

MEFKKAKLVRFYSDVKKVKEEGTKVSKSYKVFPEEHEPWRKRILDPGSQIVLKWNRLFIVSCLLALFVDPLYFYLPIVQTTGGGKGPSSSCLKTDLTLQILVTFLRTIADVFYLLHLIIKFRTAYVAPSSRVFGRGELVMDPAKIARRYIRSHFFIDFIATLPLPQMLIWFIIPATRTPQTDHNNNALAFIVIASISSEIIFDFSVKFANNQSNRSGYKDCLGRSCECPCFIAFHSFNATFLFKLIHMSLICWGQVLGASWYLLSVDRYTTCWKSLCKKERSPHNCFLYLDCSSLNSDMRKIWLNTTDVFNRCDPSKDDIQFKYGLFENALKKHVVSSNFISKYLYCLWWGLQQLSSYGQNLDTTTFIGETSFAIVIAILGLVLFAHLIGNMQTYLQSITIRLEEWRLKRRDTEEWMGHRQLPEDLRFRVRRFVQYKWLATRGVDEETILRSLPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTLGTYIVREGDPVTEMLFIIRGRLDSSTTNGGRTGFFNSIILRPGDFCGEELLSWALLPKSTMNLPSSTRTVKALSEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKKRMSAKDLGLSESLSLDETVASERAHVDEEYPTGSNSSQAKLNLGVTILASRFAANTRRGALKMKDDLPKLLKPEEPDFSTEADDD*