AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008946.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008946.01.T01 MTR_2g445230 97.561 287 7 0 1 287 1 287 0.0 566
MsG0280008946.01.T01 MTR_4g124560 30.769 273 161 7 11 280 93 340 2.10e-26 106
MsG0280008946.01.T01 MTR_4g024850 28.148 270 156 7 20 276 90 334 1.58e-22 95.9
MsG0280008946.01.T01 MTR_2g093050 30.466 279 148 9 26 281 91 346 4.23e-22 95.5
MsG0280008946.01.T01 MTR_4g111780 28.148 270 156 8 20 276 90 334 9.44e-22 93.6
MsG0280008946.01.T01 MTR_1g102670 33.333 183 106 4 18 197 87 256 3.28e-17 80.5
MsG0280008946.01.T01 MTR_4g062540 28.631 241 134 9 8 242 78 286 3.96e-12 65.9
MsG0280008946.01.T01 MTR_4g062540 28.689 244 137 9 8 242 78 293 6.37e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008946.01.T01 AT5G57450 51.220 287 117 5 16 280 18 303 2.71e-94 281
MsG0280008946.01.T01 AT5G57450 51.220 287 117 5 16 280 18 303 2.71e-94 281
MsG0280008946.01.T01 AT5G20850 32.000 275 159 8 3 276 90 337 1.64e-26 106
MsG0280008946.01.T01 AT5G20850 34.500 200 118 5 3 201 90 277 4.69e-22 94.4
MsG0280008946.01.T01 AT3G22880 30.534 262 150 7 18 276 107 339 2.32e-21 92.8
MsG0280008946.01.T01 AT2G45280 27.888 251 142 7 5 239 92 319 4.03e-21 92.0
MsG0280008946.01.T01 AT2G45280 27.888 251 142 7 5 239 116 343 4.94e-21 92.0
MsG0280008946.01.T01 AT3G22880 30.279 251 143 7 18 265 107 328 2.55e-19 86.7
MsG0280008946.01.T01 AT2G28560 29.545 264 155 8 26 276 59 304 7.40e-19 85.5
MsG0280008946.01.T01 AT2G28560 29.545 264 155 8 26 276 91 336 9.30e-19 85.5
MsG0280008946.01.T01 AT2G28560 29.545 264 155 8 26 276 91 336 9.30e-19 85.5
MsG0280008946.01.T01 AT2G28560 29.545 264 155 8 26 276 91 336 9.30e-19 85.5
MsG0280008946.01.T01 AT2G28560 29.545 264 155 8 26 276 91 336 1.32e-18 85.1
MsG0280008946.01.T01 AT1G07745 31.250 240 133 7 8 243 60 271 1.98e-18 84.0
MsG0280008946.01.T01 AT1G07745 31.250 240 133 7 8 243 78 289 2.88e-18 83.6
MsG0280008946.01.T01 AT2G28560 33.333 177 100 5 26 196 59 223 3.39e-15 73.9
MsG0280008946.01.T01 AT1G07745 35.099 151 84 5 8 154 60 200 1.17e-13 68.9
MsG0280008946.01.T01 AT1G07745 35.099 151 84 5 8 154 78 218 3.32e-13 68.2
MsG0280008946.01.T01 AT1G07745 35.099 151 84 5 8 154 78 218 3.32e-13 68.2

Find 95 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAGGAAATTGAGAACATTT+AGG 0.234968 2:-42036696 MsG0280008946.01.T01:CDS
TAGGAAATTGAGAACATTTA+GGG 0.270441 2:-42036695 MsG0280008946.01.T01:CDS
TTCTTGTCGAGGGAGGAATT+TGG 0.275226 2:-42036727 MsG0280008946.01.T01:CDS
TCTTGTCGAGGGAGGAATTT+GGG 0.281757 2:-42036726 MsG0280008946.01.T01:CDS
TAGAAGGGTTTCTCCTGCTT+TGG 0.284357 2:-42036785 MsG0280008946.01.T01:CDS
AGGAATTTGGGGAGGGTAGT+AGG 0.294515 2:-42036714 MsG0280008946.01.T01:CDS
AGAAGGGTTTCTCCTGCTTT+GGG 0.302117 2:-42036784 MsG0280008946.01.T01:CDS
GGACGAGTTGAAGGCAGATT+TGG 0.303480 2:+42037286 None:intergenic
TGTTCTGAGTTTGTTATTAC+AGG 0.329349 2:-42036643 MsG0280008946.01.T01:CDS
AAACGTTGGCGGAGAGGTTT+GGG 0.342466 2:-42036900 MsG0280008946.01.T01:CDS
AAAACGTTGGCGGAGAGGTT+TGG 0.344119 2:-42036901 MsG0280008946.01.T01:CDS
TCCTGCTTTGGGTTTGTCAT+GGG 0.345513 2:-42036773 MsG0280008946.01.T01:CDS
ACTTGTATTCCTCGGGTAGA+AGG 0.352847 2:-42036801 MsG0280008946.01.T01:CDS
CTCCTGCTTTGGGTTTGTCA+TGG 0.358577 2:-42036774 MsG0280008946.01.T01:CDS
AGAATGAAGGTCTGAGGATT+GGG 0.369884 2:-42036834 MsG0280008946.01.T01:CDS
GGTTGTGGTTGTTACAAATC+AGG 0.380826 2:-42036875 MsG0280008946.01.T01:CDS
GACGAGTTGAAGGCAGATTT+GGG 0.382407 2:+42037287 None:intergenic
TCCGCTTTCGGCGACGAGTT+CGG 0.394080 2:+42037320 None:intergenic
ACAACCTACGCTGCATTTCT+CGG 0.395622 2:+42037392 None:intergenic
GATTCTAGAATTCACACAAT+TGG 0.404454 2:+42036750 None:intergenic
TCAACTACGATAACTCTAAC+AGG 0.405318 2:+42037018 None:intergenic
GGAGAGGTTTGGGTTGGTTG+TGG 0.408109 2:-42036890 MsG0280008946.01.T01:CDS
GCGGATGGGGAAAGGGTATT+CGG 0.409787 2:+42037203 None:intergenic
GAGTTGTTTGAGGCGGCGGA+TGG 0.425263 2:+42037188 None:intergenic
GAGAATGAAGGTCTGAGGAT+TGG 0.442692 2:-42036835 MsG0280008946.01.T01:CDS
GCGGAGAGGCCGCCGTGGGA+GGG 0.444564 2:+42037246 None:intergenic
TGAATTTGAAAACTCTATGT+TGG 0.454312 2:-42036971 MsG0280008946.01.T01:CDS
GCGAGGCAGCGATCAAGAAC+GGG 0.454625 2:+42037369 None:intergenic
CTCGTCGCCGAAAGCGGAAG+CGG 0.460895 2:-42037315 MsG0280008946.01.T01:CDS
TTGAGGCGGCGGATGGGGAA+AGG 0.465846 2:+42037195 None:intergenic
GAGAGGGTCAGTTCCCAGTC+CGG 0.478566 2:+42037140 None:intergenic
GTGAGTAAAATCTCAATGTC+AGG 0.480727 2:+42037063 None:intergenic
GTTGTTTGAGGCGGCGGATG+GGG 0.483903 2:+42037190 None:intergenic
TGAGGCGGCGGATGGGGAAA+GGG 0.485959 2:+42037196 None:intergenic
AGTTGTTTGAGGCGGCGGAT+GGG 0.487558 2:+42037189 None:intergenic
GAGCCATGAGGACGAGTTGA+AGG 0.488743 2:+42037277 None:intergenic
GGGAGAGTTGTTTGAGGCGG+CGG 0.494929 2:+42037184 None:intergenic
TTCTAGAATCTTCTTGTCGA+GGG 0.500424 2:-42036737 MsG0280008946.01.T01:CDS
TCAGGTAGTTGATTTGATTG+AGG 0.500515 2:-42036857 MsG0280008946.01.T01:CDS
CCTCTCATCTAATCCCGGAC+TGG 0.500621 2:-42037154 MsG0280008946.01.T01:CDS
GAGAGGCCGCCGTGGGAGGG+TGG 0.504686 2:+42037249 None:intergenic
CTCTCATCTAATCCCGGACT+GGG 0.507437 2:-42037153 MsG0280008946.01.T01:CDS
CTTGTATTCCTCGGGTAGAA+GGG 0.514483 2:-42036800 MsG0280008946.01.T01:CDS
TTTAGTGACTTGTATTCCTC+GGG 0.514857 2:-42036808 MsG0280008946.01.T01:CDS
GGCGAGGCAGCGATCAAGAA+CGG 0.516398 2:+42037368 None:intergenic
AGAGGGTCAGTTCCCAGTCC+GGG 0.524083 2:+42037141 None:intergenic
TGGTGGCTTGAAAACGTTGG+CGG 0.526981 2:-42036911 MsG0280008946.01.T01:CDS
GCCCATGACAAACCCAAAGC+AGG 0.529237 2:+42036772 None:intergenic
CTTGTCGAGGGAGGAATTTG+GGG 0.532305 2:-42036725 MsG0280008946.01.T01:CDS
GATTTGATTGAGGAGAATGA+AGG 0.533385 2:-42036847 MsG0280008946.01.T01:CDS
CTGCCTTCAACTCGTCCTCA+TGG 0.538340 2:-42037280 MsG0280008946.01.T01:CDS
ACCGAACTCGTCGCCGAAAG+CGG 0.541419 2:-42037321 MsG0280008946.01.T01:CDS
TTGGTGTAGAGATGGGTCAA+AGG 0.545664 2:-42036609 MsG0280008946.01.T01:CDS
GAGTTTGTTATTACAGGTGA+AGG 0.546187 2:-42036637 MsG0280008946.01.T01:CDS
TCTTTCCTCTCATCTAATCC+CGG 0.550097 2:-42037159 MsG0280008946.01.T01:CDS
GAACAACATTGAGGTAAATG+AGG 0.557737 2:+42036661 None:intergenic
AGCGGAGAGGCCGCCGTGGG+AGG 0.563631 2:+42037245 None:intergenic
TTGTGGGGATGCCGCCGGCG+AGG 0.565361 2:+42037352 None:intergenic
GTTGGCGGAGAGGTTTGGGT+TGG 0.566051 2:-42036896 MsG0280008946.01.T01:CDS
GTTCTTGATCGCTGCCTCGC+CGG 0.566580 2:-42037366 MsG0280008946.01.T01:CDS
TTGAGGAGAATGAAGGTCTG+AGG 0.572056 2:-42036840 MsG0280008946.01.T01:CDS
TATATGAGAGAAAACTTCGG+TGG 0.575666 2:+42036443 None:intergenic
GGAGGAAAACGCGGTCGAGA+GGG 0.580748 2:+42037124 None:intergenic
TTCTGGTGGCTTGAAAACGT+TGG 0.580761 2:-42036914 MsG0280008946.01.T01:CDS
ATATGAGAGAAAACTTCGGT+GGG 0.590673 2:+42036444 None:intergenic
ATTAGATGAGAGGAAAGAGC+GGG 0.597816 2:+42037164 None:intergenic
ATTCTAGAATCTTCTTGTCG+AGG 0.599564 2:-42036738 MsG0280008946.01.T01:CDS
AGCGGGAGAGTTGTTTGAGG+CGG 0.599613 2:+42037181 None:intergenic
AAGAGCGGGAGAGTTGTTTG+AGG 0.600193 2:+42037178 None:intergenic
TACTCACTTACTGGAAATCG+AGG 0.601914 2:-42037047 MsG0280008946.01.T01:CDS
GCTTGAAAACGTTGGCGGAG+AGG 0.602170 2:-42036906 MsG0280008946.01.T01:CDS
GCTCAGCTTCCACCCTCCCA+CGG 0.602814 2:-42037258 MsG0280008946.01.T01:CDS
CGGAGGAAAACGCGGTCGAG+AGG 0.605398 2:+42037123 None:intergenic
GTCGAGGGAGGAATTTGGGG+AGG 0.605528 2:-42036722 MsG0280008946.01.T01:CDS
TAGAATCTTCTTGTCGAGGG+AGG 0.607196 2:-42036734 MsG0280008946.01.T01:CDS
CCAGTCCGGGATTAGATGAG+AGG 0.614842 2:+42037154 None:intergenic
ATGAAGCGGAGAGGCCGCCG+TGG 0.621821 2:+42037241 None:intergenic
TGAAGCGGAGAGGCCGCCGT+GGG 0.625174 2:+42037242 None:intergenic
CTTGATCGCTGCCTCGCCGG+CGG 0.631545 2:-42037363 MsG0280008946.01.T01:CDS
GTAGAGATGGGTCAAAGGAA+TGG 0.632565 2:-42036604 MsG0280008946.01.T01:CDS
AAAACCGAGAAATGCAGCGT+AGG 0.635039 2:-42037396 MsG0280008946.01.T01:CDS
TCGAGGGAGGAATTTGGGGA+GGG 0.635636 2:-42036721 MsG0280008946.01.T01:CDS
ACAAACTCAGAACAACATTG+AGG 0.651504 2:+42036652 None:intergenic
GATTAGATGAGAGGAAAGAG+CGG 0.651758 2:+42037163 None:intergenic
GAATATGTAGAGTGATGAAG+CGG 0.655313 2:+42037227 None:intergenic
ATTTATATGAGAGAAAACTT+CGG 0.663766 2:+42036440 None:intergenic
AGGAGAAACCCTTCTACCCG+AGG 0.678505 2:+42036792 None:intergenic
CCTCCGCGGAATTTACTCTG+CGG 0.689572 2:-42037106 MsG0280008946.01.T01:CDS
TGTAGAGTGATGAAGCGGAG+AGG 0.704294 2:+42037232 None:intergenic
CCGCAGAGTAAATTCCGCGG+AGG 0.709414 2:+42037106 None:intergenic
AAATTCCGCGGAGGAAAACG+CGG 0.710936 2:+42037115 None:intergenic
AGGGTGGAAGCTGAGCCATG+AGG 0.722612 2:+42037265 None:intergenic
TCTCCGCAGAGTAAATTCCG+CGG 0.737709 2:+42037103 None:intergenic
CAATAGCGAGATGAGCACAG+CGG 0.759325 2:-42037448 MsG0280008946.01.T01:exon
CAGCTTCCACCCTCCCACGG+CGG 0.761661 2:-42037255 MsG0280008946.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATATGAGAGAAAACTT+CGG + Chr2:42037460-42037479 None:intergenic 20.0%
!!! AACTTGAACTTTTTGTTTAA+TGG - Chr2:42037397-42037416 MsG0280008946.01.T01:CDS 20.0%
! TAGGAAATTGAGAACATTTA+GGG - Chr2:42037202-42037221 MsG0280008946.01.T01:CDS 25.0%
! TGAATTTGAAAACTCTATGT+TGG - Chr2:42036926-42036945 MsG0280008946.01.T01:CDS 25.0%
ACCAGAAATCTTGAAAAACA+AGG + Chr2:42036970-42036989 None:intergenic 30.0%
GTAGGAAATTGAGAACATTT+AGG - Chr2:42037201-42037220 MsG0280008946.01.T01:CDS 30.0%
! TTGAGATTTTACTCACTTAC+TGG - Chr2:42036841-42036860 MsG0280008946.01.T01:CDS 30.0%
!! GATTCTAGAATTCACACAAT+TGG + Chr2:42037150-42037169 None:intergenic 30.0%
!! TGTTCTGAGTTTGTTATTAC+AGG - Chr2:42037254-42037273 MsG0280008946.01.T01:CDS 30.0%
!! TTTTAGTGACTTGTATTCCT+CGG - Chr2:42037088-42037107 MsG0280008946.01.T01:CDS 30.0%
!!! TCCTTGTTTTTCAAGATTTC+TGG - Chr2:42036966-42036985 MsG0280008946.01.T01:CDS 30.0%
!!! TTGTTTTTCAAGATTTCTGG+TGG - Chr2:42036969-42036988 MsG0280008946.01.T01:CDS 30.0%
ACAAACTCAGAACAACATTG+AGG + Chr2:42037248-42037267 None:intergenic 35.0%
ATATGAGAGAAAACTTCGGT+GGG + Chr2:42037456-42037475 None:intergenic 35.0%
GAACAACATTGAGGTAAATG+AGG + Chr2:42037239-42037258 None:intergenic 35.0%
GAATATGTAGAGTGATGAAG+CGG + Chr2:42036673-42036692 None:intergenic 35.0%
GATTTGATTGAGGAGAATGA+AGG - Chr2:42037050-42037069 MsG0280008946.01.T01:CDS 35.0%
GTGAGTAAAATCTCAATGTC+AGG + Chr2:42036837-42036856 None:intergenic 35.0%
TATATGAGAGAAAACTTCGG+TGG + Chr2:42037457-42037476 None:intergenic 35.0%
TCAACTACGATAACTCTAAC+AGG + Chr2:42036882-42036901 None:intergenic 35.0%
! TTTAGTGACTTGTATTCCTC+GGG - Chr2:42037089-42037108 MsG0280008946.01.T01:CDS 35.0%
!! ATTCTAGAATCTTCTTGTCG+AGG - Chr2:42037159-42037178 MsG0280008946.01.T01:CDS 35.0%
!! GAGTTTGTTATTACAGGTGA+AGG - Chr2:42037260-42037279 MsG0280008946.01.T01:CDS 35.0%
!! TCAGGTAGTTGATTTGATTG+AGG - Chr2:42037040-42037059 MsG0280008946.01.T01:CDS 35.0%
!! TTCTAGAATCTTCTTGTCGA+GGG - Chr2:42037160-42037179 MsG0280008946.01.T01:CDS 35.0%
!!! ATTACAGGTGAAGGTGTTTT+TGG - Chr2:42037269-42037288 MsG0280008946.01.T01:CDS 35.0%
AGAATGAAGGTCTGAGGATT+GGG - Chr2:42037063-42037082 MsG0280008946.01.T01:CDS 40.0%
ATTAGATGAGAGGAAAGAGC+GGG + Chr2:42036736-42036755 None:intergenic 40.0%
GATTAGATGAGAGGAAAGAG+CGG + Chr2:42036737-42036756 None:intergenic 40.0%
GGTTGTGGTTGTTACAAATC+AGG - Chr2:42037022-42037041 MsG0280008946.01.T01:CDS 40.0%
TACTCACTTACTGGAAATCG+AGG - Chr2:42036850-42036869 MsG0280008946.01.T01:CDS 40.0%
TCTTTCCTCTCATCTAATCC+CGG - Chr2:42036738-42036757 MsG0280008946.01.T01:CDS 40.0%
!!! AGGTGTTTTTGGTGTAGAGA+TGG - Chr2:42037280-42037299 MsG0280008946.01.T01:CDS 40.0%
!!! AGTTCGGTCACTGATTTTGT+GGG + Chr2:42036564-42036583 None:intergenic 40.0%
!!! GGTGTTTTTGGTGTAGAGAT+GGG - Chr2:42037281-42037300 MsG0280008946.01.T01:CDS 40.0%
!!! TGCATTTCTCGGTTTTTTGG+TGG + Chr2:42036497-42036516 None:intergenic 40.0%
AAAACCGAGAAATGCAGCGT+AGG - Chr2:42036501-42036520 MsG0280008946.01.T01:exon 45.0%
ACAACCTACGCTGCATTTCT+CGG + Chr2:42036508-42036527 None:intergenic 45.0%
ACTTGTATTCCTCGGGTAGA+AGG - Chr2:42037096-42037115 MsG0280008946.01.T01:CDS 45.0%
AGAAGGGTTTCTCCTGCTTT+GGG - Chr2:42037113-42037132 MsG0280008946.01.T01:CDS 45.0%
CTTGTATTCCTCGGGTAGAA+GGG - Chr2:42037097-42037116 MsG0280008946.01.T01:CDS 45.0%
GAGAATGAAGGTCTGAGGAT+TGG - Chr2:42037062-42037081 MsG0280008946.01.T01:CDS 45.0%
GTAGAGATGGGTCAAAGGAA+TGG - Chr2:42037293-42037312 MsG0280008946.01.T01:CDS 45.0%
TAGAAGGGTTTCTCCTGCTT+TGG - Chr2:42037112-42037131 MsG0280008946.01.T01:CDS 45.0%
TAGAATCTTCTTGTCGAGGG+AGG - Chr2:42037163-42037182 MsG0280008946.01.T01:CDS 45.0%
TCTTGTCGAGGGAGGAATTT+GGG - Chr2:42037171-42037190 MsG0280008946.01.T01:CDS 45.0%
TTCTGGTGGCTTGAAAACGT+TGG - Chr2:42036983-42037002 MsG0280008946.01.T01:CDS 45.0%
TTCTTGTCGAGGGAGGAATT+TGG - Chr2:42037170-42037189 MsG0280008946.01.T01:CDS 45.0%
TTGAGGAGAATGAAGGTCTG+AGG - Chr2:42037057-42037076 MsG0280008946.01.T01:CDS 45.0%
TTGGTGTAGAGATGGGTCAA+AGG - Chr2:42037288-42037307 MsG0280008946.01.T01:CDS 45.0%
! GACGAGTTGAAGGCAGATTT+GGG + Chr2:42036613-42036632 None:intergenic 45.0%
! TCCTGCTTTGGGTTTGTCAT+GGG - Chr2:42037124-42037143 MsG0280008946.01.T01:CDS 45.0%
!!! CGCTGCATTTCTCGGTTTTT+TGG + Chr2:42036500-42036519 None:intergenic 45.0%
!!! GAGTTCGGTCACTGATTTTG+TGG + Chr2:42036565-42036584 None:intergenic 45.0%
!!! GTTCGGTCACTGATTTTGTG+GGG + Chr2:42036563-42036582 None:intergenic 45.0%
AAAACGTTGGCGGAGAGGTT+TGG - Chr2:42036996-42037015 MsG0280008946.01.T01:CDS 50.0%
AAACGTTGGCGGAGAGGTTT+GGG - Chr2:42036997-42037016 MsG0280008946.01.T01:CDS 50.0%
AAATTCCGCGGAGGAAAACG+CGG + Chr2:42036785-42036804 None:intergenic 50.0%
AAGAGCGGGAGAGTTGTTTG+AGG + Chr2:42036722-42036741 None:intergenic 50.0%
AGGAATTTGGGGAGGGTAGT+AGG - Chr2:42037183-42037202 MsG0280008946.01.T01:CDS 50.0%
CAATAGCGAGATGAGCACAG+CGG - Chr2:42036449-42036468 MsG0280008946.01.T01:exon 50.0%
CTCTCATCTAATCCCGGACT+GGG - Chr2:42036744-42036763 MsG0280008946.01.T01:CDS 50.0%
CTTGTCGAGGGAGGAATTTG+GGG - Chr2:42037172-42037191 MsG0280008946.01.T01:CDS 50.0%
TCTCCGCAGAGTAAATTCCG+CGG + Chr2:42036797-42036816 None:intergenic 50.0%
TGGTGGCTTGAAAACGTTGG+CGG - Chr2:42036986-42037005 MsG0280008946.01.T01:CDS 50.0%
TGTAGAGTGATGAAGCGGAG+AGG + Chr2:42036668-42036687 None:intergenic 50.0%
! CTCCTGCTTTGGGTTTGTCA+TGG - Chr2:42037123-42037142 MsG0280008946.01.T01:CDS 50.0%
! GGACGAGTTGAAGGCAGATT+TGG + Chr2:42036614-42036633 None:intergenic 50.0%
! GGTTTTACCGCTTCCGCTTT+CGG + Chr2:42036592-42036611 None:intergenic 50.0%
AGCGGGAGAGTTGTTTGAGG+CGG + Chr2:42036719-42036738 None:intergenic 55.0%
AGGAGAAACCCTTCTACCCG+AGG + Chr2:42037108-42037127 None:intergenic 55.0%
CCAGTCCGGGATTAGATGAG+AGG + Chr2:42036746-42036765 None:intergenic 55.0%
CCTCCGCGGAATTTACTCTG+CGG - Chr2:42036791-42036810 MsG0280008946.01.T01:CDS 55.0%
CCTCTCATCTAATCCCGGAC+TGG - Chr2:42036743-42036762 MsG0280008946.01.T01:CDS 55.0%
CTGCCTTCAACTCGTCCTCA+TGG - Chr2:42036617-42036636 MsG0280008946.01.T01:CDS 55.0%
GCCCATGACAAACCCAAAGC+AGG + Chr2:42037128-42037147 None:intergenic 55.0%
GCTTGAAAACGTTGGCGGAG+AGG - Chr2:42036991-42037010 MsG0280008946.01.T01:CDS 55.0%
TCGAGGGAGGAATTTGGGGA+GGG - Chr2:42037176-42037195 MsG0280008946.01.T01:CDS 55.0%
! AGTTGTTTGAGGCGGCGGAT+GGG + Chr2:42036711-42036730 None:intergenic 55.0%
! GAGCCATGAGGACGAGTTGA+AGG + Chr2:42036623-42036642 None:intergenic 55.0%
! TGATTTTGTGGGGATGCCGC+CGG + Chr2:42036553-42036572 None:intergenic 55.0%
!! GCGGATGGGGAAAGGGTATT+CGG + Chr2:42036697-42036716 None:intergenic 55.0%
!! GGAGAGGTTTGGGTTGGTTG+TGG - Chr2:42037007-42037026 MsG0280008946.01.T01:CDS 55.0%
ACCGAACTCGTCGCCGAAAG+CGG - Chr2:42036576-42036595 MsG0280008946.01.T01:exon 60.0%
AGAGGGTCAGTTCCCAGTCC+GGG + Chr2:42036759-42036778 None:intergenic 60.0%
AGGGTGGAAGCTGAGCCATG+AGG + Chr2:42036635-42036654 None:intergenic 60.0%
CCGCAGAGTAAATTCCGCGG+AGG + Chr2:42036794-42036813 None:intergenic 60.0%
GAGAGGGTCAGTTCCCAGTC+CGG + Chr2:42036760-42036779 None:intergenic 60.0%
GCGAGGCAGCGATCAAGAAC+GGG + Chr2:42036531-42036550 None:intergenic 60.0%
GGAGGAAAACGCGGTCGAGA+GGG + Chr2:42036776-42036795 None:intergenic 60.0%
GGCGAGGCAGCGATCAAGAA+CGG + Chr2:42036532-42036551 None:intergenic 60.0%
GTCGAGGGAGGAATTTGGGG+AGG - Chr2:42037175-42037194 MsG0280008946.01.T01:CDS 60.0%
GTTCTTGATCGCTGCCTCGC+CGG - Chr2:42036531-42036550 MsG0280008946.01.T01:exon 60.0%
GTTGGCGGAGAGGTTTGGGT+TGG - Chr2:42037001-42037020 MsG0280008946.01.T01:CDS 60.0%
TCCGCTTTCGGCGACGAGTT+CGG + Chr2:42036580-42036599 None:intergenic 60.0%
! GAGTTGTTTGAGGCGGCGGA+TGG + Chr2:42036712-42036731 None:intergenic 60.0%
! GGGAGAGTTGTTTGAGGCGG+CGG + Chr2:42036716-42036735 None:intergenic 60.0%
! GTTGTTTGAGGCGGCGGATG+GGG + Chr2:42036710-42036729 None:intergenic 60.0%
CGGAGGAAAACGCGGTCGAG+AGG + Chr2:42036777-42036796 None:intergenic 65.0%
CTCGTCGCCGAAAGCGGAAG+CGG - Chr2:42036582-42036601 MsG0280008946.01.T01:exon 65.0%
GCTCAGCTTCCACCCTCCCA+CGG - Chr2:42036639-42036658 MsG0280008946.01.T01:CDS 65.0%
TGAGGCGGCGGATGGGGAAA+GGG + Chr2:42036704-42036723 None:intergenic 65.0%
TTGAGGCGGCGGATGGGGAA+AGG + Chr2:42036705-42036724 None:intergenic 65.0%
! CTCGACCGCGTTTTCCTCCG+CGG - Chr2:42036777-42036796 MsG0280008946.01.T01:CDS 65.0%
ATGAAGCGGAGAGGCCGCCG+TGG + Chr2:42036659-42036678 None:intergenic 70.0%
CAGCTTCCACCCTCCCACGG+CGG - Chr2:42036642-42036661 MsG0280008946.01.T01:CDS 70.0%
CTTGATCGCTGCCTCGCCGG+CGG - Chr2:42036534-42036553 MsG0280008946.01.T01:exon 70.0%
TGAAGCGGAGAGGCCGCCGT+GGG + Chr2:42036658-42036677 None:intergenic 70.0%
TTGTGGGGATGCCGCCGGCG+AGG + Chr2:42036548-42036567 None:intergenic 75.0%
! AGCGGAGAGGCCGCCGTGGG+AGG + Chr2:42036655-42036674 None:intergenic 80.0%
! GAGAGGCCGCCGTGGGAGGG+TGG + Chr2:42036651-42036670 None:intergenic 80.0%
! GCGGAGAGGCCGCCGTGGGA+GGG + Chr2:42036654-42036673 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr2 gene 42036427 42037492 42036427 ID=MsG0280008946.01;
Chr2 mRNA 42036427 42037492 42036427 ID=MsG0280008946.01.T01;Parent=MsG0280008946.01
Chr2 exon 42036427 42037492 42036427 ID=MsG0280008946.01.T01.exon;Parent=MsG0280008946.01.T01
Chr2 CDS 42036597 42037460 42036597 ID=MsG0280008946.01.T01.cds;Parent=MsG0280008946.01.T01
Gene Sequence

>MsG0280008946.01.T01

ATGAGCACAGCGGCGCAGAATCTAGTGCATGAGCTCCACCAAAAAACCGAGAAATGCAGCGTAGGTTGTCCCGTTCTTGATCGCTGCCTCGCCGGCGGCATCCCCACAAAATCAGTGACCGAACTCGTCGCCGAAAGCGGAAGCGGTAAAACCCAAATCTGCCTTCAACTCGTCCTCATGGCTCAGCTTCCACCCTCCCACGGCGGCCTCTCCGCTTCATCACTCTACATATTCACCGAATACCCTTTCCCCATCCGCCGCCTCAAACAACTCTCCCGCTCTTTCCTCTCATCTAATCCCGGACTGGGAACTGACCCTCTCGACCGCGTTTTCCTCCGCGGAATTTACTCTGCGGAGAAATTCGTTGAATTTTTACCTGACATTGAGATTTTACTCACTTACTGGAAATCGAGGTTGCGTCCTGTTAGAGTTATCGTAGTTGATTCTATTGCTGCTTTGTTTAGATCTGAATTTGAAAACTCTATGTTGGATCTTAAACGTAGATCGTCCTTGTTTTTCAAGATTTCTGGTGGCTTGAAAACGTTGGCGGAGAGGTTTGGGTTGGTTGTGGTTGTTACAAATCAGGTAGTTGATTTGATTGAGGAGAATGAAGGTCTGAGGATTGGGAATTTTAGTGACTTGTATTCCTCGGGTAGAAGGGTTTCTCCTGCTTTGGGTTTGTCATGGGCCAATTGTGTGAATTCTAGAATCTTCTTGTCGAGGGAGGAATTTGGGGAGGGTAGTAGGAAATTGAGAACATTTAGGGTTGTTTTTGCTCCTCATTTACCTCAATGTTGTTCTGAGTTTGTTATTACAGGTGAAGGTGTTTTTGGTGTAGAGATGGGTCAAAGGAATGGTGTATGA
Protein sequence

>MsG0280008946.01.T01

MSTAAQNLVHELHQKTEKCSVGCPVLDRCLAGGIPTKSVTELVAESGSGKTQICLQLVLMAQLPPSHGGLSASSLYIFTEYPFPIRRLKQLSRSFLSSNPGLGTDPLDRVFLRGIYSAEKFVEFLPDIEILLTYWKSRLRPVRVIVVDSIAALFRSEFENSMLDLKRRSSLFFKISGGLKTLAERFGLVVVVTNQVVDLIEENEGLRIGNFSDLYSSGRRVSPALGLSWANCVNSRIFLSREEFGEGSRKLRTFRVVFAPHLPQCCSEFVITGEGVFGVEMGQRNGV*