AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280009245.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009245.01.T01 MTR_2g058330 93.607 219 7 1 7 225 60 271 8.66e-154 427
MsG0280009245.01.T01 MTR_2g055320 98.256 172 3 0 7 178 51 222 9.98e-127 359
MsG0280009245.01.T01 MTR_6g027730 46.330 218 94 7 9 223 1 198 2.82e-60 188
MsG0280009245.01.T01 MTR_6g011530 44.934 227 104 6 4 223 64 276 7.00e-60 189
MsG0280009245.01.T01 MTR_7g086380 44.495 218 103 6 7 223 78 278 1.94e-58 186
MsG0280009245.01.T01 MTR_7g009710 43.243 222 101 6 1 219 72 271 3.32e-54 175
MsG0280009245.01.T01 MTR_2g084225 42.601 223 109 5 4 224 32 237 5.92e-54 173
MsG0280009245.01.T01 MTR_4g080083 38.961 231 111 5 2 224 30 238 2.63e-52 169
MsG0280009245.01.T01 MTR_2g016230 40.598 234 97 8 7 224 34 241 1.35e-51 167
MsG0280009245.01.T01 MTR_4g080083 44.944 178 77 3 2 172 30 193 1.58e-49 160
MsG0280009245.01.T01 MTR_5g064550 47.059 170 82 2 7 174 36 199 3.24e-44 149
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009245.01.T01 AT1G18490 59.910 222 81 4 7 225 66 282 1.01e-97 286
MsG0280009245.01.T01 AT5G39890 45.374 227 96 7 1 224 74 275 4.48e-59 187
MsG0280009245.01.T01 AT5G15120 42.982 228 106 6 1 224 85 292 4.84e-54 175
MsG0280009245.01.T01 AT5G39890 48.603 179 75 4 1 179 74 235 8.26e-53 171
MsG0280009245.01.T01 AT2G42670 39.732 224 121 6 2 224 30 240 6.54e-50 163
MsG0280009245.01.T01 AT2G42670 39.286 224 123 6 2 224 30 241 2.07e-49 162
MsG0280009245.01.T01 AT3G58670 39.823 226 119 6 2 224 30 241 7.04e-49 160
MsG0280009245.01.T01 AT3G58670 39.823 226 119 6 2 224 30 241 7.04e-49 160
MsG0280009245.01.T01 AT3G58670 39.823 226 119 6 2 224 30 241 7.04e-49 160
MsG0280009245.01.T01 AT3G58670 43.094 181 92 4 45 224 28 198 2.86e-46 152
MsG0280009245.01.T01 AT2G42670 43.373 166 83 5 60 224 18 173 4.88e-41 138

Find 59 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTACAGAATGTTGAATA+AGG 0.328210 2:+48607487 None:intergenic
CTTCCTTCATATTCTTTGTA+AGG 0.334390 2:+48607535 None:intergenic
GTTTCCTAAGCCACCTGCTT+TGG 0.346298 2:-48606310 MsG0280009245.01.T01:intron
TCCTTTAGCCCAACATCAAC+TGG 0.353434 2:+48609253 None:intergenic
TGAATGTCCACATATGTTAT+CGG 0.366942 2:+48609154 None:intergenic
TTGCTAAATACGGTCATTCC+AGG 0.370103 2:+48608579 None:intergenic
TCCCTTGCTTTCTACGATGC+AGG 0.372402 2:+48608506 None:intergenic
AGTAATCTTTATATGAATAA+TGG 0.375665 2:-48606211 MsG0280009245.01.T01:CDS
GGATCTGCAGCAGCAGGAAA+TGG 0.399793 2:-48606289 MsG0280009245.01.T01:CDS
ACCAGTTGATGTTGGGCTAA+AGG 0.414927 2:-48609254 MsG0280009245.01.T01:CDS
TGAATATTTCCACCACGGTT+TGG 0.415229 2:+48607607 None:intergenic
GGCAAAGTTAGCAGTTGATA+AGG 0.419732 2:-48607665 MsG0280009245.01.T01:CDS
GCAGACGATGATCGAGGGCT+TGG 0.422778 2:-48609223 MsG0280009245.01.T01:CDS
TGCTTTGGATCTGCAGCAGC+AGG 0.424337 2:-48606295 MsG0280009245.01.T01:CDS
CCCTTGCTTTCTACGATGCA+GGG 0.439792 2:+48608507 None:intergenic
CTATTAAACCAGTTGATGTT+GGG 0.439890 2:-48609261 MsG0280009245.01.T01:CDS
TACATGTGAAAGCTTATGAC+TGG 0.450198 2:-48608539 MsG0280009245.01.T01:CDS
TTATTCATATAAAGATTACT+AGG 0.467505 2:+48606214 None:intergenic
TTTCATTGTTGCAGTAAGAC+TGG 0.467606 2:-48607686 MsG0280009245.01.T01:intron
GTGGAATAACTGAAGAAGTT+GGG 0.468762 2:+48608613 None:intergenic
GTACAGAAGTTTGCTAAATA+CGG 0.494996 2:+48608569 None:intergenic
CAAAGCTAAAGCTTTAAAGC+TGG 0.495896 2:+48606175 None:intergenic
ACTATTAAACCAGTTGATGT+TGG 0.498236 2:-48609262 MsG0280009245.01.T01:CDS
CCTTCATATTCTTTGTAAGG+AGG 0.504841 2:+48607538 None:intergenic
AGTGGAATAACTGAAGAAGT+TGG 0.509668 2:+48608612 None:intergenic
CGGTCATTCCAGGATGGTCG+TGG 0.518160 2:+48608589 None:intergenic
TGCTGCTGCAGATCCAAAGC+AGG 0.527902 2:+48606297 None:intergenic
ATGAATAATGGTGTATATGC+TGG 0.540664 2:-48606199 MsG0280009245.01.T01:CDS
CCTCCTTACAAAGAATATGA+AGG 0.541969 2:-48607538 MsG0280009245.01.T01:CDS
ATTCCACTCCACGACCATCC+TGG 0.548171 2:-48608597 MsG0280009245.01.T01:CDS
AGTAACACCTTGTGCCATGC+TGG 0.552124 2:-48607572 MsG0280009245.01.T01:CDS
AGTATTTATGATTCATGACT+CGG 0.553199 2:-48609290 None:intergenic
ATCGTAGAAAGCAAGGGACC+AGG 0.571016 2:-48608501 MsG0280009245.01.T01:CDS
AACTGAGTAGAGTAGCTCGA+TGG 0.572729 2:-48609183 MsG0280009245.01.T01:CDS
GGCTAAGCCGATAACATATG+TGG 0.574054 2:-48609161 MsG0280009245.01.T01:CDS
ACCCTGCATCGTAGAAAGCA+AGG 0.581412 2:-48608508 MsG0280009245.01.T01:CDS
GTATTTAGCAAACTTCTGTA+CGG 0.582160 2:-48608567 MsG0280009245.01.T01:CDS
CTTACAAAGAATATGAAGGA+AGG 0.584870 2:-48607534 MsG0280009245.01.T01:CDS
GTTATACCTTGAGCATGTCC+TGG 0.591297 2:+48608483 None:intergenic
ATCGAGCTACTCTACTCAGT+TGG 0.601211 2:+48609185 None:intergenic
ATTCCAGGATGGTCGTGGAG+TGG 0.604414 2:+48608594 None:intergenic
TGCTGCAGATCCAAAGCAGG+TGG 0.612693 2:+48606300 None:intergenic
ACTGAGTAGAGTAGCTCGAT+GGG 0.614850 2:-48609182 MsG0280009245.01.T01:CDS
ATCTATATGTGATGGTGAAG+AGG 0.617898 2:-48606266 MsG0280009245.01.T01:CDS
TGAATATGCTTGGCTTGCAG+AGG 0.619118 2:-48606242 MsG0280009245.01.T01:CDS
GTGAAGAGGATGAATATGCT+TGG 0.619635 2:-48606252 MsG0280009245.01.T01:CDS
AAGCTGCAGACGATGATCGA+GGG 0.621450 2:-48609228 MsG0280009245.01.T01:CDS
AGGTGCGAGAACGTCCAGCA+TGG 0.623380 2:+48607558 None:intergenic
AGAACGTCCAGCATGGCACA+AGG 0.628704 2:+48607565 None:intergenic
GAAGCTGCAGACGATGATCG+AGG 0.636302 2:-48609229 MsG0280009245.01.T01:CDS
AAGGGACCAGGACATGCTCA+AGG 0.639003 2:-48608489 MsG0280009245.01.T01:intron
AACAGTGAATATTTCCACCA+CGG 0.639958 2:+48607602 None:intergenic
AGTTGATGTTGGGCTAAAGG+AGG 0.645564 2:-48609251 MsG0280009245.01.T01:CDS
CCCTGCATCGTAGAAAGCAA+GGG 0.655648 2:-48608507 MsG0280009245.01.T01:CDS
ACATGTGAAAGCTTATGACT+GGG 0.657723 2:-48608538 MsG0280009245.01.T01:CDS
TAAATACGGTCATTCCAGGA+TGG 0.667422 2:+48608583 None:intergenic
GGAAATGGATCTATATGTGA+TGG 0.678954 2:-48606274 MsG0280009245.01.T01:CDS
TTGCTTTCTACGATGCAGGG+TGG 0.704355 2:+48608510 None:intergenic
TATAAAACTGATGTTTCACA+TGG 0.754209 2:+48607631 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTAAATAAAGATATTAG+TGG + Chr2:48608171-48608190 None:intergenic 10.0%
!!! TTCTTGTTATAATATTTTAT+CGG - Chr2:48608941-48608960 MsG0280009245.01.T01:intron 10.0%
!! AAGGGAATTATAAATTAAAT+TGG - Chr2:48607493-48607512 MsG0280009245.01.T01:intron 15.0%
!! AGTAATCTTTATATGAATAA+TGG - Chr2:48609252-48609271 MsG0280009245.01.T01:CDS 15.0%
!! TTATTCATATAAAGATTACT+AGG + Chr2:48609252-48609271 None:intergenic 15.0%
!! AATAAAGATGTTATGAAACA+CGG + Chr2:48609129-48609148 None:intergenic 20.0%
!! ACTATTAAGAGAAATTATCA+AGG - Chr2:48608819-48608838 MsG0280009245.01.T01:intron 20.0%
!! CAGATTATATAACTTATTGT+GGG + Chr2:48606490-48606509 None:intergenic 20.0%
!!! GGATATAATTTGAAACATTT+TGG + Chr2:48607159-48607178 None:intergenic 20.0%
!!! TTTCTCTTAATAGTTTTTCT+AGG + Chr2:48608813-48608832 None:intergenic 20.0%
!!! TTTTGTTTTCTTTTCGAAAT+TGG - Chr2:48607466-48607485 MsG0280009245.01.T01:intron 20.0%
! AACAAGTTTATCATACTAAG+TGG + Chr2:48608923-48608942 None:intergenic 25.0%
! AATCAGTATAAACCAAAACA+TGG + Chr2:48607422-48607441 None:intergenic 25.0%
! ACAAGTTTATCATACTAAGT+GGG + Chr2:48608922-48608941 None:intergenic 25.0%
! ACAATGAAAAAACAAAACCA+TGG + Chr2:48607766-48607785 None:intergenic 25.0%
! AGGGTTTATATCATTAAACA+TGG + Chr2:48607700-48607719 None:intergenic 25.0%
! AGTACATATAGTAGAAAAGA+TGG - Chr2:48608675-48608694 MsG0280009245.01.T01:intron 25.0%
! ATAAGTTATATAATCTGCCA+TGG - Chr2:48606493-48606512 MsG0280009245.01.T01:intron 25.0%
! ATCGAGTAAATACAATATAC+AGG + Chr2:48607005-48607024 None:intergenic 25.0%
! ATGAATAGTAAGGCTAATAT+AGG + Chr2:48608198-48608217 None:intergenic 25.0%
! CATTATCGAATGTAATATTC+AGG - Chr2:48607639-48607658 MsG0280009245.01.T01:CDS 25.0%
! GCAGATTATATAACTTATTG+TGG + Chr2:48606491-48606510 None:intergenic 25.0%
! GTTTATATCAAACAGTAATC+TGG - Chr2:48608022-48608041 MsG0280009245.01.T01:intron 25.0%
! TAATGAGCTGCATAAAAATA+TGG - Chr2:48608852-48608871 MsG0280009245.01.T01:intron 25.0%
! TACTTACAGAATGTTGAATA+AGG + Chr2:48607979-48607998 None:intergenic 25.0%
! TATAAAACTGATGTTTCACA+TGG + Chr2:48607835-48607854 None:intergenic 25.0%
!! TATTTTATCGGAGATATAGT+AGG - Chr2:48608953-48608972 MsG0280009245.01.T01:intron 25.0%
!! TTGGTGTAAAAAAGGTATAA+GGG - Chr2:48607197-48607216 MsG0280009245.01.T01:intron 25.0%
!!! ATGTTTTGGTTTATACTGAT+TGG - Chr2:48607421-48607440 MsG0280009245.01.T01:intron 25.0%
!!! TCATGAATCTGATAGTTTTA+CGG - Chr2:48606329-48606348 MsG0280009245.01.T01:intron 25.0%
!!! TGCTTAATTTATTTTCGTGT+TGG + Chr2:48608497-48608516 None:intergenic 25.0%
!!! TGTTTTGGTTTATACTGATT+GGG - Chr2:48607422-48607441 MsG0280009245.01.T01:intron 25.0%
AAAATAGGGATGAAAAAGGA+AGG + Chr2:48607720-48607739 None:intergenic 30.0%
AAATAGGGATGAAAAAGGAA+GGG + Chr2:48607719-48607738 None:intergenic 30.0%
ACATATAGTAGAAAAGATGG+CGG - Chr2:48608678-48608697 MsG0280009245.01.T01:intron 30.0%
ACGACATTAGATACATAGTT+GGG - Chr2:48608650-48608669 MsG0280009245.01.T01:intron 30.0%
ACTACCTTAAGCCTATTTAT+AGG + Chr2:48609017-48609036 None:intergenic 30.0%
AGACTTTGATTCATGTCATA+GGG + Chr2:48608293-48608312 None:intergenic 30.0%
AGTTTGCAACAATTTCCATT+AGG + Chr2:48607318-48607337 None:intergenic 30.0%
ATGAATAATGGTGTATATGC+TGG - Chr2:48609264-48609283 MsG0280009245.01.T01:CDS 30.0%
ATGAGTGTGTATTATCCTTT+GGG - Chr2:48607122-48607141 MsG0280009245.01.T01:intron 30.0%
CAAGTTTATCATACTAAGTG+GGG + Chr2:48608921-48608940 None:intergenic 30.0%
CTGAGTTAATACCTCATAAA+CGG - Chr2:48607593-48607612 MsG0280009245.01.T01:CDS 30.0%
CTTACAAAGAATATGAAGGA+AGG - Chr2:48607929-48607948 MsG0280009245.01.T01:intron 30.0%
CTTCCTTCATATTCTTTGTA+AGG + Chr2:48607931-48607950 None:intergenic 30.0%
GGAAAACAAAAAACTATGAG+TGG + Chr2:48606469-48606488 None:intergenic 30.0%
GGGAAAATCTTATCGAAAAA+CGG - Chr2:48608427-48608446 MsG0280009245.01.T01:intron 30.0%
GTATTTAGCAAACTTCTGTA+CGG - Chr2:48606896-48606915 MsG0280009245.01.T01:intron 30.0%
TAGACTTTGATTCATGTCAT+AGG + Chr2:48608294-48608313 None:intergenic 30.0%
TAGAGATTAGAATGTTGTGT+TGG - Chr2:48608520-48608539 MsG0280009245.01.T01:CDS 30.0%
TGAATGTCCACATATGTTAT+CGG + Chr2:48606312-48606331 None:intergenic 30.0%
TTCCAAAATAGGGATGAAAA+AGG + Chr2:48607724-48607743 None:intergenic 30.0%
TTGGTAAAATAACATCCCAA+AGG + Chr2:48607140-48607159 None:intergenic 30.0%
TTTATCTGACTTTGCATGTA+TGG - Chr2:48607282-48607301 MsG0280009245.01.T01:intron 30.0%
TTTCAAATTATATCCTCCCT+TGG - Chr2:48607164-48607183 MsG0280009245.01.T01:intron 30.0%
! ACTATTAAACCAGTTGATGT+TGG - Chr2:48606201-48606220 MsG0280009245.01.T01:CDS 30.0%
! ACTTTCATTATGCCATGTTT+TGG - Chr2:48607407-48607426 MsG0280009245.01.T01:intron 30.0%
! ATAGTAGGTTAGTTACTAGT+TGG - Chr2:48608968-48608987 MsG0280009245.01.T01:intron 30.0%
! CTATTAAACCAGTTGATGTT+GGG - Chr2:48606202-48606221 MsG0280009245.01.T01:CDS 30.0%
! CTTTTCGAAATTGGAGAAAA+GGG - Chr2:48607475-48607494 MsG0280009245.01.T01:intron 30.0%
! GTTGGTGTAAAAAAGGTATA+AGG - Chr2:48607196-48607215 MsG0280009245.01.T01:intron 30.0%
! TCTTTTCGAAATTGGAGAAA+AGG - Chr2:48607474-48607493 MsG0280009245.01.T01:intron 30.0%
! TGGTGTAAAAAAGGTATAAG+GGG - Chr2:48607198-48607217 MsG0280009245.01.T01:intron 30.0%
!! ATGAGACAAATGTTCTAAAG+AGG + Chr2:48608102-48608121 None:intergenic 30.0%
!! GTACAGAAGTTTGCTAAATA+CGG + Chr2:48606897-48606916 None:intergenic 30.0%
!! GTCTTGTTATTACGTTAATC+CGG - Chr2:48606721-48606740 MsG0280009245.01.T01:intron 30.0%
!! TTCCTTTTTCATCCCTATTT+TGG - Chr2:48607719-48607738 MsG0280009245.01.T01:intron 30.0%
AACACACAAACTGACTATCA+TGG + Chr2:48606546-48606565 None:intergenic 35.0%
AACAGTGAATATTTCCACCA+CGG + Chr2:48607864-48607883 None:intergenic 35.0%
AACTAGACTTACGTAGTGTT+TGG - Chr2:48608702-48608721 MsG0280009245.01.T01:intron 35.0%
ACATGTGAAAGCTTATGACT+GGG - Chr2:48606925-48606944 MsG0280009245.01.T01:intron 35.0%
ACTAGACTTACGTAGTGTTT+GGG - Chr2:48608703-48608722 MsG0280009245.01.T01:intron 35.0%
ACTCAGAACTTGAGGTTATA+TGG - Chr2:48607556-48607575 MsG0280009245.01.T01:CDS 35.0%
AGAGGACAGTTAATATGAGA+CGG + Chr2:48608084-48608103 None:intergenic 35.0%
AGTAAGGAGAGTAGATCAAA+TGG - Chr2:48608755-48608774 MsG0280009245.01.T01:intron 35.0%
AGTGGAATAACTGAAGAAGT+TGG + Chr2:48606854-48606873 None:intergenic 35.0%
ATACCAGGTAGTTCCAAAAT+AGG + Chr2:48607735-48607754 None:intergenic 35.0%
ATAGTCAGTTTGTGTGTTTG+TGG - Chr2:48606548-48606567 MsG0280009245.01.T01:intron 35.0%
CATGAGTGTGTATTATCCTT+TGG - Chr2:48607121-48607140 MsG0280009245.01.T01:intron 35.0%
CCTCCTTACAAAGAATATGA+AGG - Chr2:48607925-48607944 MsG0280009245.01.T01:intron 35.0%
CCTTCATATTCTTTGTAAGG+AGG + Chr2:48607928-48607947 None:intergenic 35.0%
CGACATTAGATACATAGTTG+GGG - Chr2:48608651-48608670 MsG0280009245.01.T01:intron 35.0%
GAAATTGTATATGGAGTCCA+TGG + Chr2:48606513-48606532 None:intergenic 35.0%
GACGACATTAGATACATAGT+TGG - Chr2:48608649-48608668 MsG0280009245.01.T01:intron 35.0%
GGAAATGGATCTATATGTGA+TGG - Chr2:48609189-48609208 MsG0280009245.01.T01:CDS 35.0%
GTAAAAAACAGCGAAGAGAT+AGG - Chr2:48608316-48608335 MsG0280009245.01.T01:intron 35.0%
GTCGTCGAAGAAATTGTATA+TGG + Chr2:48606522-48606541 None:intergenic 35.0%
GTGGAATAACTGAAGAAGTT+GGG + Chr2:48606853-48606872 None:intergenic 35.0%
GTGGTAAGACTAGACAAAAT+AGG - Chr2:48608617-48608636 MsG0280009245.01.T01:CDS 35.0%
TACATGTGAAAGCTTATGAC+TGG - Chr2:48606924-48606943 MsG0280009245.01.T01:intron 35.0%
TACCAGGTAGTTCCAAAATA+GGG + Chr2:48607734-48607753 None:intergenic 35.0%
TAGTCAGTTTGTGTGTTTGT+GGG - Chr2:48606549-48606568 MsG0280009245.01.T01:intron 35.0%
TCACGTTCTTACAACTTATG+AGG + Chr2:48606439-48606458 None:intergenic 35.0%
TGACACGGTAAATCTTCATT+AGG + Chr2:48606674-48606693 None:intergenic 35.0%
TTATCGAAAAACGGTAAGAC+CGG - Chr2:48608436-48608455 MsG0280009245.01.T01:intron 35.0%
TTCATCTACCTCTAGTGATT+TGG + Chr2:48608788-48608807 None:intergenic 35.0%
TTGCAACAATTTCCATTAGG+TGG + Chr2:48607315-48607334 None:intergenic 35.0%
TTTATCATACTAAGTGGGGT+CGG + Chr2:48608917-48608936 None:intergenic 35.0%
TTTCATTGTTGCAGTAAGAC+TGG - Chr2:48607777-48607796 MsG0280009245.01.T01:intron 35.0%
! AAAGTACCACTCAAACTGAA+GGG - Chr2:48608407-48608426 MsG0280009245.01.T01:intron 35.0%
! ATCTATATGTGATGGTGAAG+AGG - Chr2:48609197-48609216 MsG0280009245.01.T01:CDS 35.0%
! ATTTTACAATCGTTTCCGAG+GGG - Chr2:48607527-48607546 MsG0280009245.01.T01:CDS 35.0%
! CATTTTACAATCGTTTCCGA+GGG - Chr2:48607526-48607545 MsG0280009245.01.T01:CDS 35.0%
! GACTTGTGGATTATGTAGTA+AGG - Chr2:48608739-48608758 MsG0280009245.01.T01:intron 35.0%
! GAGAAGTGAGGTATTTGAAT+TGG - Chr2:48606805-48606824 MsG0280009245.01.T01:intron 35.0%
! GTTAGTTGGTGCCTATAAAT+AGG - Chr2:48609003-48609022 MsG0280009245.01.T01:intron 35.0%
! TTGGTTTATACTGATTGGGT+CGG - Chr2:48607426-48607445 MsG0280009245.01.T01:intron 35.0%
!! TCAGTTTTATATCCAAACCG+TGG - Chr2:48607844-48607863 MsG0280009245.01.T01:intron 35.0%
!! TGTCTAAGTTGATCACAGTA+AGG + Chr2:48607348-48607367 None:intergenic 35.0%
!! TTAGCCTTACTATTCATAGC+CGG - Chr2:48608201-48608220 MsG0280009245.01.T01:intron 35.0%
!! TTGGCTTTATTTGACTGACA+CGG + Chr2:48606689-48606708 None:intergenic 35.0%
AAGGAGAGTAGATCAAATGG+AGG - Chr2:48608758-48608777 MsG0280009245.01.T01:intron 40.0%
ACCATGGAAATACAGATACC+AGG + Chr2:48607750-48607769 None:intergenic 40.0%
ACCTGGTATCTGTATTTCCA+TGG - Chr2:48607746-48607765 MsG0280009245.01.T01:intron 40.0%
ACTGTTCGAAATGAGAAGTG+AGG - Chr2:48606793-48606812 MsG0280009245.01.T01:intron 40.0%
AGAATGTTGTGTTGGATGTG+TGG - Chr2:48608528-48608547 MsG0280009245.01.T01:CDS 40.0%
AGGAGAGTAGATCAAATGGA+GGG - Chr2:48608759-48608778 MsG0280009245.01.T01:intron 40.0%
AGTTTGTGTGTTTGTGGGTA+TGG - Chr2:48606554-48606573 MsG0280009245.01.T01:intron 40.0%
CCTCGGAAACGATTGTAAAA+TGG + Chr2:48607528-48607547 None:intergenic 40.0%
GACAGTTAATATGAGACGGA+GGG + Chr2:48608080-48608099 None:intergenic 40.0%
GAGATGTAAACCACCGTATT+CGG - Chr2:48608338-48608357 MsG0280009245.01.T01:intron 40.0%
GATGTTATGATGCAAGCATC+CGG + Chr2:48606743-48606762 None:intergenic 40.0%
GATGTTGTACTGGACAATGT+TGG - Chr2:48608460-48608479 MsG0280009245.01.T01:intron 40.0%
GGATTTGAACTCAGAACTTG+AGG - Chr2:48607548-48607567 MsG0280009245.01.T01:CDS 40.0%
GGTGCCTATAAATAGGCTTA+AGG - Chr2:48609010-48609029 MsG0280009245.01.T01:intron 40.0%
GTGAAGAGGATGAATATGCT+TGG - Chr2:48609211-48609230 MsG0280009245.01.T01:CDS 40.0%
GTTATGAAACACGGCATCAA+TGG + Chr2:48609120-48609139 None:intergenic 40.0%
TAAATACGGTCATTCCAGGA+TGG + Chr2:48606883-48606902 None:intergenic 40.0%
TATGGACAAAAGCCACCTAA+TGG - Chr2:48607300-48607319 MsG0280009245.01.T01:intron 40.0%
TGAATATTTCCACCACGGTT+TGG + Chr2:48607859-48607878 None:intergenic 40.0%
TTGCTAAATACGGTCATTCC+AGG + Chr2:48606887-48606906 None:intergenic 40.0%
TTGTACTGGACAATGTTGGA+CGG - Chr2:48608464-48608483 MsG0280009245.01.T01:intron 40.0%
TTGTGTTGGATGTGTGGTAA+GGG - Chr2:48608534-48608553 MsG0280009245.01.T01:CDS 40.0%
TTTCAACCACCAACCGAATA+CGG + Chr2:48608354-48608373 None:intergenic 40.0%
! CCATTTTACAATCGTTTCCG+AGG - Chr2:48607525-48607544 MsG0280009245.01.T01:CDS 40.0%
! GACTAAAGTGTCCGTTTATG+AGG + Chr2:48607607-48607626 None:intergenic 40.0%
! GATTTTCCCTTCAGTTTGAG+TGG + Chr2:48608416-48608435 None:intergenic 40.0%
! GGCAAAGTTAGCAGTTGATA+AGG - Chr2:48607798-48607817 MsG0280009245.01.T01:intron 40.0%
! GTAGGTTAGTTACTAGTTGG+TGG - Chr2:48608971-48608990 MsG0280009245.01.T01:intron 40.0%
! GTTTTATATCCAAACCGTGG+TGG - Chr2:48607847-48607866 MsG0280009245.01.T01:intron 40.0%
!! GAAAGTACCACTCAAACTGA+AGG - Chr2:48608406-48608425 MsG0280009245.01.T01:intron 40.0%
!! TATTCGGTTGGTGGTTGAAA+TGG - Chr2:48608354-48608373 MsG0280009245.01.T01:intron 40.0%
!!! ATCCCTATTTTGGAACTACC+TGG - Chr2:48607729-48607748 MsG0280009245.01.T01:intron 40.0%
AACTGAGTAGAGTAGCTCGA+TGG - Chr2:48606280-48606299 MsG0280009245.01.T01:CDS 45.0%
AAGAGGGTTGTGGTAGACTT+GGG - Chr2:48608242-48608261 MsG0280009245.01.T01:intron 45.0%
ACAAGACGCAATGAGCAGTT+TGG + Chr2:48606708-48606727 None:intergenic 45.0%
ACTGAGTAGAGTAGCTCGAT+GGG - Chr2:48606281-48606300 MsG0280009245.01.T01:CDS 45.0%
ATCGAGCTACTCTACTCAGT+TGG + Chr2:48606281-48606300 None:intergenic 45.0%
ATTGTCCAGTACAACATCGC+CGG + Chr2:48608458-48608477 None:intergenic 45.0%
CCAAGTCGGGTAAAAGAAGA+GGG - Chr2:48608226-48608245 MsG0280009245.01.T01:intron 45.0%
GCATGTAGAGAGAAGACTTG+TGG - Chr2:48608725-48608744 MsG0280009245.01.T01:intron 45.0%
GGACAGTTAATATGAGACGG+AGG + Chr2:48608081-48608100 None:intergenic 45.0%
GGAGAGTAGATCAAATGGAG+GGG - Chr2:48608760-48608779 MsG0280009245.01.T01:intron 45.0%
GGCTAAGCCGATAACATATG+TGG - Chr2:48606302-48606321 MsG0280009245.01.T01:CDS 45.0%
GTTATACCTTGAGCATGTCC+TGG + Chr2:48606983-48607002 None:intergenic 45.0%
GTTGTGTTGGATGTGTGGTA+AGG - Chr2:48608533-48608552 MsG0280009245.01.T01:CDS 45.0%
TCCTTTAGCCCAACATCAAC+TGG + Chr2:48606213-48606232 None:intergenic 45.0%
TGTAAACCACCGTATTCGGT+TGG - Chr2:48608342-48608361 MsG0280009245.01.T01:intron 45.0%
TGTGTTTGTGGGTATGGCTA+TGG - Chr2:48606560-48606579 MsG0280009245.01.T01:intron 45.0%
TTGAAATGGAGGAGGTTCTC+AGG - Chr2:48608368-48608387 MsG0280009245.01.T01:intron 45.0%
! ACCAGTTGATGTTGGGCTAA+AGG - Chr2:48606209-48606228 MsG0280009245.01.T01:CDS 45.0%
! AGTTGATGTTGGGCTAAAGG+AGG - Chr2:48606212-48606231 MsG0280009245.01.T01:CDS 45.0%
! CCTCTTCTTTTACCCGACTT+GGG + Chr2:48608228-48608247 None:intergenic 45.0%
! GATCGAGGGCTTGGATTTTT+CGG - Chr2:48606249-48606268 MsG0280009245.01.T01:CDS 45.0%
! GCGTGCAGTTGGTGTAAAAA+AGG - Chr2:48607189-48607208 MsG0280009245.01.T01:intron 45.0%
! GGTGGTGGTTACTAGTTAGT+TGG - Chr2:48608989-48609008 MsG0280009245.01.T01:intron 45.0%
! GTTCTGAGTTCAAATCCCCT+CGG + Chr2:48607545-48607564 None:intergenic 45.0%
!! GGTTAGTTACTAGTTGGTGG+TGG - Chr2:48608974-48608993 MsG0280009245.01.T01:intron 45.0%
!! TGAATATGCTTGGCTTGCAG+AGG - Chr2:48609221-48609240 MsG0280009245.01.T01:CDS 45.0%
AAACCACCGTATTCGGTTGG+TGG - Chr2:48608345-48608364 MsG0280009245.01.T01:intron 50.0%
AAGCTGCAGACGATGATCGA+GGG - Chr2:48606235-48606254 MsG0280009245.01.T01:CDS 50.0%
ACCCTGCATCGTAGAAAGCA+AGG - Chr2:48606955-48606974 MsG0280009245.01.T01:intron 50.0%
AGATCCAAAGCAGGTGGCTT+AGG + Chr2:48609160-48609179 None:intergenic 50.0%
AGTAACACCTTGTGCCATGC+TGG - Chr2:48607891-48607910 MsG0280009245.01.T01:intron 50.0%
ATCGTAGAAAGCAAGGGACC+AGG - Chr2:48606962-48606981 MsG0280009245.01.T01:intron 50.0%
ATTCATAGCCGGTCCCAAGT+CGG - Chr2:48608212-48608231 MsG0280009245.01.T01:intron 50.0%
CCCAAGTCGGGTAAAAGAAG+AGG - Chr2:48608225-48608244 MsG0280009245.01.T01:intron 50.0%
CCCTGCATCGTAGAAAGCAA+GGG - Chr2:48606956-48606975 MsG0280009245.01.T01:intron 50.0%
CCCTTGCTTTCTACGATGCA+GGG + Chr2:48606959-48606978 None:intergenic 50.0%
CGGGTAAAAGAAGAGGGTTG+TGG - Chr2:48608232-48608251 MsG0280009245.01.T01:intron 50.0%
GAAGAGGGTTGTGGTAGACT+TGG - Chr2:48608241-48608260 MsG0280009245.01.T01:intron 50.0%
GGGACCGGCTATGAATAGTA+AGG + Chr2:48608208-48608227 None:intergenic 50.0%
GTTTCCTAAGCCACCTGCTT+TGG - Chr2:48609153-48609172 MsG0280009245.01.T01:CDS 50.0%
TAAGACCGGCGATGTTGTAC+TGG - Chr2:48608450-48608469 MsG0280009245.01.T01:intron 50.0%
TCCCTTGCTTTCTACGATGC+AGG + Chr2:48606960-48606979 None:intergenic 50.0%
TTGCTTTCTACGATGCAGGG+TGG + Chr2:48606956-48606975 None:intergenic 50.0%
! CCCTCTTCTTTTACCCGACT+TGG + Chr2:48608229-48608248 None:intergenic 50.0%
! TGCTGCTTGCATCTTAGCAG+AGG + Chr2:48606599-48606618 None:intergenic 50.0%
!! GTTGGTGGTTGAAATGGAGG+AGG - Chr2:48608360-48608379 MsG0280009245.01.T01:intron 50.0%
!! TCGGTTGGTGGTTGAAATGG+AGG - Chr2:48608357-48608376 MsG0280009245.01.T01:intron 50.0%
!!! TCTTTTACCCGACTTGGGAC+CGG + Chr2:48608223-48608242 None:intergenic 50.0%
AAGGGACCAGGACATGCTCA+AGG - Chr2:48606974-48606993 MsG0280009245.01.T01:intron 55.0%
ACACCAACTGCACGCAACCA+AGG + Chr2:48607184-48607203 None:intergenic 55.0%
AGAACGTCCAGCATGGCACA+AGG + Chr2:48607901-48607920 None:intergenic 55.0%
ATTCCACTCCACGACCATCC+TGG - Chr2:48606866-48606885 MsG0280009245.01.T01:intron 55.0%
ATTCCAGGATGGTCGTGGAG+TGG + Chr2:48606872-48606891 None:intergenic 55.0%
CAACCACCAACCGAATACGG+TGG + Chr2:48608351-48608370 None:intergenic 55.0%
CACCAACTGCACGCAACCAA+GGG + Chr2:48607183-48607202 None:intergenic 55.0%
GAAGCTGCAGACGATGATCG+AGG - Chr2:48606234-48606253 MsG0280009245.01.T01:CDS 55.0%
GAGGGGAGCCAAATCACTAG+AGG - Chr2:48608777-48608796 MsG0280009245.01.T01:intron 55.0%
GGATCTGCAGCAGCAGGAAA+TGG - Chr2:48609174-48609193 MsG0280009245.01.T01:CDS 55.0%
TGCTGCAGATCCAAAGCAGG+TGG + Chr2:48609166-48609185 None:intergenic 55.0%
TGCTGCTGCAGATCCAAAGC+AGG + Chr2:48609169-48609188 None:intergenic 55.0%
TTCATAGCCGGTCCCAAGTC+GGG - Chr2:48608213-48608232 MsG0280009245.01.T01:intron 55.0%
! TGCTTTGGATCTGCAGCAGC+AGG - Chr2:48609168-48609187 MsG0280009245.01.T01:CDS 55.0%
AGGTGCGAGAACGTCCAGCA+TGG + Chr2:48607908-48607927 None:intergenic 60.0%
CAACTGCACGCAACCAAGGG+AGG + Chr2:48607180-48607199 None:intergenic 60.0%
CGGTCATTCCAGGATGGTCG+TGG + Chr2:48606877-48606896 None:intergenic 60.0%
CTCCCTTGGTTGCGTGCAGT+TGG - Chr2:48607178-48607197 MsG0280009245.01.T01:intron 60.0%
GCAGACGATGATCGAGGGCT+TGG - Chr2:48606240-48606259 MsG0280009245.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 48606180 48609305 48606180 ID=MsG0280009245.01;Name=MsG0280009245.01
Chr2 mRNA 48606180 48609305 48606180 ID=MsG0280009245.01.T01;Parent=MsG0280009245.01;Name=MsG0280009245.01.T01;_AED=0.44;_eAED=0.45;_QI=0|0.66|0.5|1|1|1|4|0|225
Chr2 exon 48609135 48609305 48609135 ID=MsG0280009245.01.T01:exon:20555;Parent=MsG0280009245.01.T01
Chr2 exon 48608490 48608652 48608490 ID=MsG0280009245.01.T01:exon:20554;Parent=MsG0280009245.01.T01
Chr2 exon 48607494 48607694 48607494 ID=MsG0280009245.01.T01:exon:20553;Parent=MsG0280009245.01.T01
Chr2 exon 48606180 48606322 48606180 ID=MsG0280009245.01.T01:exon:20552;Parent=MsG0280009245.01.T01
Chr2 CDS 48609135 48609305 48609135 ID=MsG0280009245.01.T01:cds;Parent=MsG0280009245.01.T01
Chr2 CDS 48608490 48608652 48608490 ID=MsG0280009245.01.T01:cds;Parent=MsG0280009245.01.T01
Chr2 CDS 48607494 48607694 48607494 ID=MsG0280009245.01.T01:cds;Parent=MsG0280009245.01.T01
Chr2 CDS 48606180 48606322 48606180 ID=MsG0280009245.01.T01:cds;Parent=MsG0280009245.01.T01
Gene Sequence

>MsG0280009245.01.T01

ATGATTCATGACTCGGCAGACACTATTAAACCAGTTGATGTTGGGCTAAAGGAGGAAGCTGCAGACGATGATCGAGGGCTTGGATTTTTCGGTGTTAACCAACTGAGTAGAGTAGCTCGATGGGCTAAGCCGATAACATATGTGGACATTCATGAATCTGATAGTTTTACGATGTGTATGTTTTGTTTCCCAACTTCTTCAGTTATTCCACTCCACGACCATCCTGGAATGACCGTATTTAGCAAACTTCTGTACGGATCTTTACATGTGAAAGCTTATGACTGGGTTGAGCCACCCTGCATCGTAGAAAGCAAGGGACCAGGACATGCTCAAGTAAGACTGGCAAAGTTAGCAGTTGATAAGGTTTTGAATGCACCATGTGAAACATCAGTTTTATATCCAAACCGTGGTGGAAATATTCACTGTTTCACAGCAGTAACACCTTGTGCCATGCTGGACGTTCTCGCACCTCCTTACAAAGAATATGAAGGAAGGAAATGTACTTATTATCACGATTATCCTTATTCAACATTCTCCACCTGCTTTGGATCTGCAGCAGCAGGAAATGGATCTATATGTGATGGTGAAGAGGATGAATATGCTTGGCTTGCAGAGGTAGAACCTAGTAATCTTTATATGAATAATGGTGTATATGCTGGTCCAGCTTTAAAGCTTTAG
Protein sequence

>MsG0280009245.01.T01

MIHDSADTIKPVDVGLKEEAADDDRGLGFFGVNQLSRVARWAKPITYVDIHESDSFTMCMFCFPTSSVIPLHDHPGMTVFSKLLYGSLHVKAYDWVEPPCIVESKGPGHAQVRLAKLAVDKVLNAPCETSVLYPNRGGNIHCFTAVTPCAMLDVLAPPYKEYEGRKCTYYHDYPYSTFSTCFGSAAAGNGSICDGEEDEYAWLAEVEPSNLYMNNGVYAGPALKL*