AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280009592.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009592.01.T01 MTR_5g004830 43.810 105 59 0 319 423 38 142 2.76e-24 98.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 114 sgRNAs with CRISPR-Local

Find 373 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATATTGCATGTCAAATTT+TGG 0.111779 2:+54888652 None:intergenic
CAATTGCTATGTGACATTTC+TGG 0.190006 2:-54888213 MsG0280009592.01.T01:CDS
CTAAGAGTTGCAAACAATTC+AGG 0.267819 2:-54888595 MsG0280009592.01.T01:CDS
CCAACAAACCTGTGCCTGTT+AGG 0.278862 2:-54889833 MsG0280009592.01.T01:CDS
GGTGTATGGTTGTTTGAAAA+TGG 0.338308 2:-54892495 MsG0280009592.01.T01:CDS
GTTCTTCGATGGTGGGAAAA+AGG 0.341248 2:-54892427 MsG0280009592.01.T01:CDS
GCATATCTCAAAAGGATAGA+TGG 0.342000 2:-54893769 MsG0280009592.01.T01:CDS
CACAAGCAGGCCCATGGTTT+CGG 0.344601 2:+54892401 None:intergenic
AGCATTCTTCTTCTGAATCA+TGG 0.388381 2:+54888725 None:intergenic
AAAAGATAGGAAATGTTTAC+CGG 0.392172 2:-54889658 MsG0280009592.01.T01:CDS
GCTGTTAGGATTGAAAATTT+AGG 0.392202 2:-54892372 MsG0280009592.01.T01:CDS
AAGGAAGGTTACTATGTTCC+CGG 0.392694 2:-54888688 MsG0280009592.01.T01:CDS
CATGCAATATGATGACTATA+AGG 0.392912 2:-54888641 MsG0280009592.01.T01:CDS
CACACGGGCAGAACCCTAAC+AGG 0.394704 2:+54889819 None:intergenic
CCCCACCGATTCCTCTTGAC+GGG 0.399912 2:+54892265 None:intergenic
CCTAACAGGCACAGGTTTGT+TGG 0.409549 2:+54889833 None:intergenic
GCTGGTAAAGGTTGAACTTC+CGG 0.409985 2:+54889639 None:intergenic
AAAATGGAAAACAAAGAAGT+AGG 0.427748 2:-54892479 MsG0280009592.01.T01:CDS
TTGTATCTGGTGGAACCCCT+AGG 0.430272 2:-54892339 MsG0280009592.01.T01:CDS
ATTTCGACTCCTATGTGTAT+AGG 0.431470 2:+54888440 None:intergenic
TGCTTGTGCCAACCGCTGTT+AGG 0.438508 2:-54892386 MsG0280009592.01.T01:CDS
TAACTACTTGATTGGTGGTC+AGG 0.441980 2:-54889784 MsG0280009592.01.T01:CDS
GAAAACAAAGAAGTAGGGTT+TGG 0.448156 2:-54892473 MsG0280009592.01.T01:CDS
TACTAATGGCATATCTCAAA+AGG 0.453364 2:-54893777 None:intergenic
AACCAGAGAAAAGGTAAAGC+TGG 0.461091 2:+54889329 None:intergenic
TTAATCTTTCTGATGCGGTT+CGG 0.462111 2:+54889888 None:intergenic
GGACTTATGTTGCAAAAGAT+AGG 0.471076 2:-54889671 MsG0280009592.01.T01:CDS
CTAACAGGCACAGGTTTGTT+GGG 0.471771 2:+54889834 None:intergenic
GTTCAACCTTTACCAGCTGT+TGG 0.475630 2:-54889633 MsG0280009592.01.T01:CDS
AGACATGGAGGTACCGGCTC+TGG 0.478033 2:+54888616 None:intergenic
TGTATCTGGTGGAACCCCTA+GGG 0.478796 2:-54892338 MsG0280009592.01.T01:CDS
TAAGAGTTGCAAACAATTCA+GGG 0.480959 2:-54888594 MsG0280009592.01.T01:CDS
CAACAAACCTGTGCCTGTTA+GGG 0.481585 2:-54889832 MsG0280009592.01.T01:CDS
CATTGAATACTGTCATCTAC+TGG 0.482241 2:-54892689 MsG0280009592.01.T01:CDS
AAATGGAAAACAAAGAAGTA+GGG 0.484412 2:-54892478 MsG0280009592.01.T01:CDS
GTTCTGCCCGTGTGTAATGA+TGG 0.487267 2:-54889810 MsG0280009592.01.T01:CDS
GATGGGGATAACTACTTGAT+TGG 0.488525 2:-54889792 MsG0280009592.01.T01:CDS
CTAGGGGAGTACGTTGTAGA+TGG 0.488790 2:-54892321 MsG0280009592.01.T01:CDS
TTGATTGTAGACAAGGATAT+CGG 0.497231 2:-54889928 MsG0280009592.01.T01:intron
ACCTTTACCAGCTGTTGGAT+CGG 0.498629 2:-54889628 MsG0280009592.01.T01:CDS
GGTGGCCCGTCAAGAGGAAT+CGG 0.500570 2:-54892270 MsG0280009592.01.T01:intron
ACACTTACAACAGCATAAGT+TGG 0.503451 2:+54888541 None:intergenic
TTCTGCCCGTGTGTAATGAT+GGG 0.507778 2:-54889809 MsG0280009592.01.T01:CDS
ATTCCTCTTGACGGGCCACC+AGG 0.510733 2:+54892273 None:intergenic
AATGACTTCAACCAGAGAAA+AGG 0.511203 2:+54889320 None:intergenic
TTTGAAAAGACAGTGACAAA+GGG 0.515369 2:-54892197 MsG0280009592.01.T01:intron
TGCGAGTAATCCGCAGACTC+TGG 0.516912 2:-54892165 MsG0280009592.01.T01:intron
ATAGATGGGATGAATCACTA+TGG 0.517951 2:-54893754 MsG0280009592.01.T01:CDS
TAACAGCGGTTGGCACAAGC+AGG 0.522613 2:+54892388 None:intergenic
TATTCAATCTTGACCGCAGT+TGG 0.523494 2:+54889732 None:intergenic
TACCAGTCATTTACCAAGGA+AGG 0.524931 2:-54888703 MsG0280009592.01.T01:CDS
CATAAGATGAAGATGTACAT+AGG 0.525061 2:-54888320 MsG0280009592.01.T01:CDS
ATGATTTAATCTTTCTGATG+CGG 0.525207 2:+54889883 None:intergenic
TCCGATCCAACAGCTGGTAA+AGG 0.526263 2:+54889627 None:intergenic
TTGAATACATCGGAGACAAA+TGG 0.526601 2:-54889716 MsG0280009592.01.T01:CDS
CATCAGAAAGATTAAATCAT+CGG 0.532326 2:-54889880 MsG0280009592.01.T01:CDS
GGCGATACGTTCTTCGATGG+TGG 0.535825 2:-54892435 MsG0280009592.01.T01:CDS
CATATCTCAAAAGGATAGAT+GGG 0.535853 2:-54893768 MsG0280009592.01.T01:CDS
AATGTCACATAGCAATTGAA+AGG 0.536677 2:+54888218 None:intergenic
TTGGTTGATTCAGATGAAGA+TGG 0.537698 2:-54888383 MsG0280009592.01.T01:CDS
GCGATACGTTCTTCGATGGT+GGG 0.541055 2:-54892434 MsG0280009592.01.T01:CDS
CATCTACAACGTACTCCCCT+AGG 0.541707 2:+54892322 None:intergenic
GGGAACATAGTAACCTTCCT+TGG 0.543034 2:+54888690 None:intergenic
TTAGACCATCGAGAGGTGTA+TGG 0.543270 2:-54892509 MsG0280009592.01.T01:CDS
GATTGGTGGTCAGGAGGTGG+CGG 0.543599 2:-54889775 MsG0280009592.01.T01:CDS
GTATCGCCGTCGTTGCTAGT+AGG 0.544635 2:+54892450 None:intergenic
AACCTTCCTTGGTAAATGAC+TGG 0.545045 2:+54888701 None:intergenic
CTTGATTGGTGGTCAGGAGG+TGG 0.545418 2:-54889778 MsG0280009592.01.T01:CDS
ATGAAGATGTACATAGGGCA+AGG 0.553041 2:-54888314 MsG0280009592.01.T01:CDS
ACTCTTAGACATGGAGGTAC+CGG 0.555530 2:+54888610 None:intergenic
CATAGGAGTCGAAATTCTAA+AGG 0.559600 2:-54888432 MsG0280009592.01.T01:CDS
GGTTGGCACAAGCAGGCCCA+TGG 0.561579 2:+54892395 None:intergenic
ATAAGATGAAGATGTACATA+GGG 0.562203 2:-54888319 MsG0280009592.01.T01:CDS
ATCTACAACGTACTCCCCTA+GGG 0.563450 2:+54892323 None:intergenic
GAAGCAAATCACACTGACCT+TGG 0.564869 2:-54888402 MsG0280009592.01.T01:CDS
TCAACGTCCGATCCAACAGC+TGG 0.565637 2:+54889621 None:intergenic
TGACTATAAGGAACCAGAGC+CGG 0.567138 2:-54888629 MsG0280009592.01.T01:CDS
TTGTTTGCAACTCTTAGACA+TGG 0.570930 2:+54888601 None:intergenic
CAACCTGGTGGCCCGTCAAG+AGG 0.572161 2:-54892276 MsG0280009592.01.T01:CDS
CAGCGTATTCCTATACACAT+AGG 0.575668 2:-54888449 MsG0280009592.01.T01:CDS
CTATGTGACATTTCTGGAGA+GGG 0.581455 2:-54888207 MsG0280009592.01.T01:CDS
AATTTACGTGCTTATCAACC+TGG 0.583623 2:-54892291 MsG0280009592.01.T01:CDS
GGCAGAACCCTAACAGGCAC+AGG 0.583938 2:+54889825 None:intergenic
TTTGGAACTGGATCAGAACC+GGG 0.603268 2:+54888670 None:intergenic
GACGGCGATACGTTCTTCGA+TGG 0.605584 2:-54892438 MsG0280009592.01.T01:CDS
AGATGTACATAGGGCAAGGG+TGG 0.609118 2:-54888310 MsG0280009592.01.T01:CDS
GAGTCTGCGGATTACTCGCA+CGG 0.611332 2:+54892168 None:intergenic
GCTATGTGACATTTCTGGAG+AGG 0.612333 2:-54888208 MsG0280009592.01.T01:CDS
ATACTGTCATCTACTGGACC+AGG 0.613035 2:-54892683 MsG0280009592.01.T01:intron
CTACTTGATTGGTGGTCAGG+AGG 0.614481 2:-54889781 MsG0280009592.01.T01:CDS
GGGGATAACTACTTGATTGG+TGG 0.617506 2:-54889789 MsG0280009592.01.T01:CDS
AAAGACAGTGACAAAGGGCA+TGG 0.620169 2:-54892192 MsG0280009592.01.T01:intron
TGAAGATGTACATAGGGCAA+GGG 0.630089 2:-54888313 MsG0280009592.01.T01:CDS
TTAAATCATCGGATACTGCA+TGG 0.635516 2:-54889869 MsG0280009592.01.T01:CDS
GTATCTGGTGGAACCCCTAG+GGG 0.636803 2:-54892337 MsG0280009592.01.T01:CDS
TGAAAACATACCAGAGTCTG+CGG 0.644980 2:+54892155 None:intergenic
GTTATCCCCATCATTACACA+CGG 0.657792 2:+54889803 None:intergenic
TCGATGGTCTAACATGTCTG+AGG 0.658388 2:+54892520 None:intergenic
AACAACCATACACCTCTCGA+TGG 0.662438 2:+54892504 None:intergenic
TTTGCAACTCTTAGACATGG+AGG 0.667332 2:+54888604 None:intergenic
TCTGCCCGTGTGTAATGATG+GGG 0.670629 2:-54889808 MsG0280009592.01.T01:CDS
GCTTTGAGCTAACAATCCTG+TGG 0.670658 2:-54889692 MsG0280009592.01.T01:CDS
ATCTTCATCTGAATCAACCA+AGG 0.672333 2:+54888385 None:intergenic
ATGCTACCAGTCATTTACCA+AGG 0.679424 2:-54888707 MsG0280009592.01.T01:CDS
AGTCTGCGGATTACTCGCAC+GGG 0.687119 2:+54892169 None:intergenic
TTACGTGCTTATCAACCTGG+TGG 0.690272 2:-54892288 MsG0280009592.01.T01:CDS
AAGAGTTGCAAACAATTCAG+GGG 0.692587 2:-54888593 MsG0280009592.01.T01:CDS
GCGGTCAAGATTGAATACAT+CGG 0.698378 2:-54889726 MsG0280009592.01.T01:CDS
TCGCATCAAAGTGCCAACTG+CGG 0.699522 2:-54889745 MsG0280009592.01.T01:CDS
TATTGAAGATATCAACTGTG+AGG 0.713067 2:-54888360 MsG0280009592.01.T01:CDS
TCTACAACGTACTCCCCTAG+GGG 0.718760 2:+54892324 None:intergenic
GTTTGGCCTACTAGCAACGA+CGG 0.729742 2:-54892456 MsG0280009592.01.T01:CDS
AGACATGTTAGACCATCGAG+AGG 0.733742 2:-54892516 MsG0280009592.01.T01:CDS
TTATCCCCATCATTACACAC+GGG 0.759800 2:+54889804 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATACTTATTCTATTAAA+AGG - Chr2:54890786-54890805 MsG0280009592.01.T01:intron 10.0%
!! ATAATCATTGAATAATTAAA+GGG + Chr2:54889094-54889113 None:intergenic 10.0%
!! ATCACATAATATTTATTATT+AGG - Chr2:54891022-54891041 MsG0280009592.01.T01:intron 10.0%
!! TAACAATTAAAAATAATTGA+TGG + Chr2:54891972-54891991 None:intergenic 10.0%
!! TATAATCATTGAATAATTAA+AGG + Chr2:54889095-54889114 None:intergenic 10.0%
!! TTTAAGTATTATATTACAAA+TGG - Chr2:54893190-54893209 MsG0280009592.01.T01:intron 10.0%
!!! CAATTATTTTTAATTGTTAA+TGG - Chr2:54891973-54891992 MsG0280009592.01.T01:intron 10.0%
!!! TTTTAATTAATCAATCATTA+TGG + Chr2:54890720-54890739 None:intergenic 10.0%
!! AAATGTAGATAAAAAACTAT+TGG + Chr2:54889148-54889167 None:intergenic 15.0%
!! ACTGCAAATTTATATATAAT+AGG + Chr2:54893016-54893035 None:intergenic 15.0%
!! ATTATATATAAATTTGCAGT+AGG - Chr2:54893016-54893035 MsG0280009592.01.T01:intron 15.0%
!! ATTTAAACTTTAAACTTCAA+TGG - Chr2:54889198-54889217 MsG0280009592.01.T01:intron 15.0%
!! ATTTATCATTATGATTATGT+TGG - Chr2:54888358-54888377 MsG0280009592.01.T01:CDS 15.0%
!! CAAATAATGTAAATAGAAAA+TGG - Chr2:54892841-54892860 MsG0280009592.01.T01:intron 15.0%
!! CTCTAATTATAATTGAATTA+CGG - Chr2:54888281-54888300 MsG0280009592.01.T01:CDS 15.0%
!! TAAAAATTGTTAAGTGTTAA+TGG - Chr2:54889327-54889346 MsG0280009592.01.T01:intron 15.0%
!! TTCTTATAAGATATTATGTT+CGG - Chr2:54890623-54890642 MsG0280009592.01.T01:intron 15.0%
!!! CTTGTTTTTTGTTTATATTT+TGG - Chr2:54888633-54888652 MsG0280009592.01.T01:CDS 15.0%
!!! TTTGTATTTTTTTTGACAAA+TGG - Chr2:54889021-54889040 MsG0280009592.01.T01:intron 15.0%
!! AAAAATGATAATTGTTGAGT+AGG - Chr2:54892714-54892733 MsG0280009592.01.T01:CDS 20.0%
!! AAAATGATAATTGTTGAGTA+GGG - Chr2:54892715-54892734 MsG0280009592.01.T01:CDS 20.0%
!! AATAAATTAACGATTTCCTT+TGG + Chr2:54890099-54890118 None:intergenic 20.0%
!! AATAGGTTAAATTCAATCAA+CGG + Chr2:54891816-54891835 None:intergenic 20.0%
!! AATTATTACAAGATTATGCT+GGG - Chr2:54890577-54890596 MsG0280009592.01.T01:intron 20.0%
!! ATCTTACTATTAAACATGAA+TGG - Chr2:54891706-54891725 MsG0280009592.01.T01:intron 20.0%
!! ATTTGAATTGAACACATTTA+TGG + Chr2:54892826-54892845 None:intergenic 20.0%
!! CAAATTACAAAAATATACGA+TGG + Chr2:54890513-54890532 None:intergenic 20.0%
!! CGTAATTCAATTATAATTAG+AGG + Chr2:54888283-54888302 None:intergenic 20.0%
!! GCAAATTTATATATAATAGG+TGG + Chr2:54893013-54893032 None:intergenic 20.0%
!! GTATTATATTACAAATGGAA+TGG - Chr2:54893195-54893214 MsG0280009592.01.T01:intron 20.0%
!! GTTATTTATAAACACTTGAT+TGG - Chr2:54893488-54893507 MsG0280009592.01.T01:intron 20.0%
!! TAATTATTACAAGATTATGC+TGG - Chr2:54890576-54890595 MsG0280009592.01.T01:intron 20.0%
!! TCTTATAAGATATTATGTTC+GGG - Chr2:54890624-54890643 MsG0280009592.01.T01:intron 20.0%
!! TGAGAAAGAAATTATTACAA+GGG + Chr2:54888436-54888455 None:intergenic 20.0%
!! TGCAAAAAATTCTTTCAAAA+CGG - Chr2:54891916-54891935 MsG0280009592.01.T01:intron 20.0%
!! TTGAGAAAGAAATTATTACA+AGG + Chr2:54888437-54888456 None:intergenic 20.0%
!!! AAGTTTAAATTTTTTTTGGG+AGG + Chr2:54889188-54889207 None:intergenic 20.0%
!!! ATGATATTTTTAGCGTAAAT+AGG + Chr2:54891833-54891852 None:intergenic 20.0%
!!! TATCAACAAAAAAGTGTATT+GGG - Chr2:54892939-54892958 MsG0280009592.01.T01:intron 20.0%
!!! TCGTATATTTTTGTAATTTG+TGG - Chr2:54890513-54890532 MsG0280009592.01.T01:intron 20.0%
!!! TTTTGTTAAGAAATGTAATG+TGG - Chr2:54893689-54893708 MsG0280009592.01.T01:intron 20.0%
!!! TTTTTTTTTCCCAATTTCAA+TGG - Chr2:54891366-54891385 MsG0280009592.01.T01:intron 20.0%
! AAAAGATAGGAAATGTTTAC+CGG - Chr2:54892313-54892332 MsG0280009592.01.T01:CDS 25.0%
! AAAATGGAAAACAAAGAAGT+AGG - Chr2:54889492-54889511 MsG0280009592.01.T01:intron 25.0%
! AAATGGAAAACAAAGAAGTA+GGG - Chr2:54889493-54889512 MsG0280009592.01.T01:intron 25.0%
! AACTTTATAAATCCAAAGGT+AGG + Chr2:54892775-54892794 None:intergenic 25.0%
! AATATCATCAACTGAATGTT+TGG - Chr2:54891845-54891864 MsG0280009592.01.T01:intron 25.0%
! AATTAAGCACTAACATGTAT+GGG + Chr2:54890605-54890624 None:intergenic 25.0%
! AATTCCTAAAACAGTTTGTA+TGG + Chr2:54890762-54890781 None:intergenic 25.0%
! ACATTTCAATCAATGTTTCA+AGG + Chr2:54891446-54891465 None:intergenic 25.0%
! ACCAATAAATTTCAACAACT+TGG - Chr2:54891230-54891249 MsG0280009592.01.T01:intron 25.0%
! ACGGTATGTATTATTAGATT+AGG - Chr2:54888300-54888319 MsG0280009592.01.T01:CDS 25.0%
! ACTTTATAAATCCAAAGGTA+GGG + Chr2:54892774-54892793 None:intergenic 25.0%
! AGAACAAAATTGTAAACACA+TGG + Chr2:54889929-54889948 None:intergenic 25.0%
! AGAGATTAAGTTATATCATC+TGG - Chr2:54888251-54888270 MsG0280009592.01.T01:CDS 25.0%
! ATAAGATGAAGATGTACATA+GGG - Chr2:54893652-54893671 MsG0280009592.01.T01:intron 25.0%
! ATAATACAGAACTAAAGACA+TGG + Chr2:54893160-54893179 None:intergenic 25.0%
! ATAGTTCTTGTTACATTAGT+TGG + Chr2:54888385-54888404 None:intergenic 25.0%
! ATCTAATCATGTATCATGAA+GGG - Chr2:54891868-54891887 MsG0280009592.01.T01:intron 25.0%
! ATGACTTGACTACAAATATA+TGG - Chr2:54889986-54890005 MsG0280009592.01.T01:intron 25.0%
! ATGATTTAATCTTTCTGATG+CGG + Chr2:54892091-54892110 None:intergenic 25.0%
! CAATAAATTTCAACAACTTG+GGG - Chr2:54891232-54891251 MsG0280009592.01.T01:intron 25.0%
! CATCAGAAAGATTAAATCAT+CGG - Chr2:54892091-54892110 MsG0280009592.01.T01:intron 25.0%
! CATTACCAAAATTAGCATTA+AGG + Chr2:54890554-54890573 None:intergenic 25.0%
! CATTTCAATCAATGTTTCAA+GGG + Chr2:54891445-54891464 None:intergenic 25.0%
! CCAATAAATTTCAACAACTT+GGG - Chr2:54891231-54891250 MsG0280009592.01.T01:intron 25.0%
! CGGTATGTATTATTAGATTA+GGG - Chr2:54888301-54888320 MsG0280009592.01.T01:CDS 25.0%
! CTATTCATCACATAACAAAT+TGG - Chr2:54893062-54893081 MsG0280009592.01.T01:intron 25.0%
! CTGTAGCTTAATTTAAATCT+AGG - Chr2:54890430-54890449 MsG0280009592.01.T01:intron 25.0%
! GAGATTAAGTTATATCATCT+GGG - Chr2:54888252-54888271 MsG0280009592.01.T01:CDS 25.0%
! GGTATGTATTATTAGATTAG+GGG - Chr2:54888302-54888321 MsG0280009592.01.T01:CDS 25.0%
! GTATGTATTATTAGATTAGG+GGG - Chr2:54888303-54888322 MsG0280009592.01.T01:CDS 25.0%
! GTGAGAAATTAAGGAAAAAT+TGG + Chr2:54891303-54891322 None:intergenic 25.0%
! TACCAACTTTATAAATCCAA+AGG + Chr2:54892779-54892798 None:intergenic 25.0%
! TACCTTTGGATTTATAAAGT+TGG - Chr2:54892774-54892793 MsG0280009592.01.T01:intron 25.0%
! TAGTTCTTGTTACATTAGTT+GGG + Chr2:54888384-54888403 None:intergenic 25.0%
! TATGGAAATGACAAATATCT+TGG - Chr2:54890192-54890211 MsG0280009592.01.T01:intron 25.0%
! TCAACCTAAACTAAGTAAAT+CGG + Chr2:54888687-54888706 None:intergenic 25.0%
! TGATTGAGTTTGTAAATAAG+TGG - Chr2:54888860-54888879 MsG0280009592.01.T01:intron 25.0%
! TTTCAATTTACCTGCAAAAT+GGG + Chr2:54888914-54888933 None:intergenic 25.0%
!! AATGAGTATATTTTCCATCA+AGG + Chr2:54890940-54890959 None:intergenic 25.0%
!! ATCCTAACATATATTTTCTG+CGG + Chr2:54892965-54892984 None:intergenic 25.0%
!! ATTCCATTGTTGTTGAAAAT+GGG + Chr2:54891535-54891554 None:intergenic 25.0%
!! ATTTTTCCTTAATTTCTCAC+TGG - Chr2:54891303-54891322 MsG0280009592.01.T01:intron 25.0%
!! CAAACTATTTTCGTTATTGA+TGG - Chr2:54889837-54889856 MsG0280009592.01.T01:CDS 25.0%
!! GTATCAACAAAAAAGTGTAT+TGG - Chr2:54892938-54892957 MsG0280009592.01.T01:intron 25.0%
!! TAAAATTTGTTCAACCTTGA+TGG - Chr2:54890923-54890942 MsG0280009592.01.T01:intron 25.0%
!! TAAATTTTCAATCCTAACAG+CGG + Chr2:54889600-54889619 None:intergenic 25.0%
!! TATTCCATTGTTGTTGAAAA+TGG + Chr2:54891536-54891555 None:intergenic 25.0%
!! TCATATTGCATGTCAAATTT+TGG + Chr2:54893322-54893341 None:intergenic 25.0%
!! TTGATAAGCACGTAAATTTT+CGG + Chr2:54889678-54889697 None:intergenic 25.0%
!! TTTTCAACAACAATGGAATA+TGG - Chr2:54891536-54891555 MsG0280009592.01.T01:intron 25.0%
!! TTTTCAATTTACCTGCAAAA+TGG + Chr2:54888915-54888934 None:intergenic 25.0%
!!! TTTAGGTTGAATATCATATG+AGG - Chr2:54888697-54888716 MsG0280009592.01.T01:CDS 25.0%
AACAAAGTTCTTTCAACACA+TGG + Chr2:54890408-54890427 None:intergenic 30.0%
AACTTGCATGTTATTACCAT+TGG - Chr2:54891118-54891137 MsG0280009592.01.T01:intron 30.0%
AAGTGAATGAGTGAATAAGT+AGG - Chr2:54892913-54892932 MsG0280009592.01.T01:intron 30.0%
AATGACAAATATCTTGGACA+TGG - Chr2:54890198-54890217 MsG0280009592.01.T01:intron 30.0%
AATGGTAATAACATGCAAGT+TGG + Chr2:54891119-54891138 None:intergenic 30.0%
AATGTCACATAGCAATTGAA+AGG + Chr2:54893756-54893775 None:intergenic 30.0%
AGACAATAATTTGGTAGAAG+GGG - Chr2:54890239-54890258 MsG0280009592.01.T01:intron 30.0%
AGTGAATGAGTGAATAAGTA+GGG - Chr2:54892914-54892933 MsG0280009592.01.T01:intron 30.0%
ATGGTAATAACATGCAAGTT+GGG + Chr2:54891118-54891137 None:intergenic 30.0%
CAACCTAAACTAAGTAAATC+GGG + Chr2:54888686-54888705 None:intergenic 30.0%
CAGACAATAATTTGGTAGAA+GGG - Chr2:54890238-54890257 MsG0280009592.01.T01:intron 30.0%
CAGCAGAAATCTTCTTTATT+GGG - Chr2:54890314-54890333 MsG0280009592.01.T01:intron 30.0%
CATAAGATGAAGATGTACAT+AGG - Chr2:54893651-54893670 MsG0280009592.01.T01:intron 30.0%
CATATCTCAAAAGGATAGAT+GGG - Chr2:54888203-54888222 MsG0280009592.01.T01:CDS 30.0%
CATGCAATATGATGACTATA+AGG - Chr2:54893330-54893349 MsG0280009592.01.T01:intron 30.0%
CCCAAGTTGTTGAAATTTAT+TGG + Chr2:54891234-54891253 None:intergenic 30.0%
CCTGATAGATATGGATATAA+AGG + Chr2:54892587-54892606 None:intergenic 30.0%
CCTTTATATCCATATCTATC+AGG - Chr2:54892584-54892603 MsG0280009592.01.T01:intron 30.0%
GAATTAAGCACTAACATGTA+TGG + Chr2:54890606-54890625 None:intergenic 30.0%
GATAATGCTGTTAATGATCA+GGG - Chr2:54889223-54889242 MsG0280009592.01.T01:intron 30.0%
GATAATTGTGCACTCATATT+TGG + Chr2:54890169-54890188 None:intergenic 30.0%
GATCTAATCATGTATCATGA+AGG - Chr2:54891867-54891886 MsG0280009592.01.T01:intron 30.0%
GCAGAAAATATATGTTAGGA+TGG - Chr2:54892964-54892983 MsG0280009592.01.T01:intron 30.0%
GCAGTTCCAAAAAAAAAACA+GGG + Chr2:54889432-54889451 None:intergenic 30.0%
GCTGTTAGGATTGAAAATTT+AGG - Chr2:54889599-54889618 MsG0280009592.01.T01:intron 30.0%
GTAAATCCAGTGAGAAATTA+AGG + Chr2:54891312-54891331 None:intergenic 30.0%
GTATGTTGCAGACAATAATT+TGG - Chr2:54890230-54890249 MsG0280009592.01.T01:intron 30.0%
GTATTTGACGTAGTCAATAA+TGG - Chr2:54890690-54890709 MsG0280009592.01.T01:intron 30.0%
TAAGAGTTGCAAACAATTCA+GGG - Chr2:54893377-54893396 MsG0280009592.01.T01:intron 30.0%
TATTGAAGATATCAACTGTG+AGG - Chr2:54893611-54893630 MsG0280009592.01.T01:intron 30.0%
TCAGCAGAAATCTTCTTTAT+TGG - Chr2:54890313-54890332 MsG0280009592.01.T01:intron 30.0%
TCATGAAGGGATATTATATG+TGG - Chr2:54891881-54891900 MsG0280009592.01.T01:intron 30.0%
TCTTCTCATTGTGTTTATGA+AGG + Chr2:54891148-54891167 None:intergenic 30.0%
TGCTACAATTAAGTGTGTAA+CGG - Chr2:54892415-54892434 MsG0280009592.01.T01:CDS 30.0%
TGTATTCTTAAAAGTTGTCG+TGG - Chr2:54890979-54890998 MsG0280009592.01.T01:intron 30.0%
TTATTGTCTGCAACATACTT+CGG + Chr2:54890228-54890247 None:intergenic 30.0%
TTCACTCATTCACTTAACTT+TGG + Chr2:54892908-54892927 None:intergenic 30.0%
TTGATTGTAGACAAGGATAT+CGG - Chr2:54892043-54892062 MsG0280009592.01.T01:intron 30.0%
TTTCCCGATTTACTTAGTTT+AGG - Chr2:54888680-54888699 MsG0280009592.01.T01:CDS 30.0%
TTTGAAAAGACAGTGACAAA+GGG - Chr2:54889774-54889793 MsG0280009592.01.T01:CDS 30.0%
! ATGACCATACAAACTGTTTT+AGG - Chr2:54890755-54890774 MsG0280009592.01.T01:intron 30.0%
! GAACTTCTTTTCATATGTGT+AGG - Chr2:54892612-54892631 MsG0280009592.01.T01:intron 30.0%
! GTGACGCTTTAACTTATTTA+GGG - Chr2:54892482-54892501 MsG0280009592.01.T01:CDS 30.0%
! TGATAATGCTGTTAATGATC+AGG - Chr2:54889222-54889241 MsG0280009592.01.T01:intron 30.0%
! TGTGACGCTTTAACTTATTT+AGG - Chr2:54892481-54892500 MsG0280009592.01.T01:CDS 30.0%
! TGTTTTCATCGTTCATTGTA+GGG - Chr2:54889391-54889410 MsG0280009592.01.T01:intron 30.0%
! TTCTTCTGAATCATGGTTTT+TGG + Chr2:54893242-54893261 None:intergenic 30.0%
! TTGTTTTCATCGTTCATTGT+AGG - Chr2:54889390-54889409 MsG0280009592.01.T01:intron 30.0%
! TTTCCTTTGGAAATTGCTAA+TGG + Chr2:54890086-54890105 None:intergenic 30.0%
!! CACTTTTTGAACCTTAATGT+CGG - Chr2:54890024-54890043 MsG0280009592.01.T01:intron 30.0%
!! TTTTGAAAAGACAGTGACAA+AGG - Chr2:54889773-54889792 MsG0280009592.01.T01:CDS 30.0%
!!! AGACAATTTTTTGTATCTGG+TGG - Chr2:54889622-54889641 MsG0280009592.01.T01:CDS 30.0%
!!! AGGAGACAATTTTTTGTATC+TGG - Chr2:54889619-54889638 MsG0280009592.01.T01:CDS 30.0%
!!! GGACAAGCTATGTTTTATTT+TGG - Chr2:54890260-54890279 MsG0280009592.01.T01:intron 30.0%
!!! TGTGAGGTTTTTTTTGAAGA+TGG - Chr2:54893627-54893646 MsG0280009592.01.T01:intron 30.0%
!!! TTTTTTTTGTGCGAATGGTT+TGG - Chr2:54888989-54889008 MsG0280009592.01.T01:intron 30.0%
AACTGTTCAATACTGTGGAT+CGG + Chr2:54891398-54891417 None:intergenic 35.0%
AAGAGTTGCAAACAATTCAG+GGG - Chr2:54893378-54893397 MsG0280009592.01.T01:intron 35.0%
AAGGAAGAGGTGACAAAATT+GGG - Chr2:54888332-54888351 MsG0280009592.01.T01:CDS 35.0%
AATAAGTGGACAGAAGACAT+TGG - Chr2:54888874-54888893 MsG0280009592.01.T01:intron 35.0%
AATCGTTCTTTGCATCAAAC+AGG - Chr2:54888591-54888610 MsG0280009592.01.T01:CDS 35.0%
AATGACTTCAACCAGAGAAA+AGG + Chr2:54892654-54892673 None:intergenic 35.0%
AATTTACGTGCTTATCAACC+TGG - Chr2:54889680-54889699 MsG0280009592.01.T01:CDS 35.0%
ACAAATATCTTGGACATGGT+TGG - Chr2:54890202-54890221 MsG0280009592.01.T01:intron 35.0%
ACACTTACAACAGCATAAGT+TGG + Chr2:54893433-54893452 None:intergenic 35.0%
ACTCTAAACATGGAAAGAGA+CGG - Chr2:54888540-54888559 MsG0280009592.01.T01:intron 35.0%
AGCATCATCTTACATGAACT+AGG + Chr2:54890668-54890687 None:intergenic 35.0%
AGCATTCTTCTTCTGAATCA+TGG + Chr2:54893249-54893268 None:intergenic 35.0%
AGCCTGACATATTAAAGTAC+AGG + Chr2:54892443-54892462 None:intergenic 35.0%
ATAGATGGGATGAATCACTA+TGG - Chr2:54888217-54888236 MsG0280009592.01.T01:CDS 35.0%
ATCTTCATCTGAATCAACCA+AGG + Chr2:54893589-54893608 None:intergenic 35.0%
ATGTAAAGACTCCGACATTA+AGG + Chr2:54890038-54890057 None:intergenic 35.0%
ATTAGCATTAAGGACACCAT+AGG + Chr2:54890544-54890563 None:intergenic 35.0%
ATTTCGACTCCTATGTGTAT+AGG + Chr2:54893534-54893553 None:intergenic 35.0%
CAAAAAAAAAACAGGGCACA+CGG + Chr2:54889425-54889444 None:intergenic 35.0%
CAATTGCTATGTGACATTTC+TGG - Chr2:54893758-54893777 MsG0280009592.01.T01:CDS 35.0%
CATAGGAGTCGAAATTCTAA+AGG - Chr2:54893539-54893558 MsG0280009592.01.T01:intron 35.0%
CATTGAATACTGTCATCTAC+TGG - Chr2:54889282-54889301 MsG0280009592.01.T01:intron 35.0%
CTAAGAGTTGCAAACAATTC+AGG - Chr2:54893376-54893395 MsG0280009592.01.T01:intron 35.0%
GAAAACAAAGAAGTAGGGTT+TGG - Chr2:54889498-54889517 MsG0280009592.01.T01:intron 35.0%
GAGTGCACAATTATCACTTA+TGG - Chr2:54890174-54890193 MsG0280009592.01.T01:intron 35.0%
GATATCCTTGTCTACAATCA+AGG + Chr2:54892044-54892063 None:intergenic 35.0%
GCAGACAATAATTTGGTAGA+AGG - Chr2:54890237-54890256 MsG0280009592.01.T01:intron 35.0%
GCATATCTCAAAAGGATAGA+TGG - Chr2:54888202-54888221 MsG0280009592.01.T01:CDS 35.0%
GCTAATGGAGACAAATGTAA+AGG + Chr2:54890071-54890090 None:intergenic 35.0%
GGACTTATGTTGCAAAAGAT+AGG - Chr2:54892300-54892319 MsG0280009592.01.T01:CDS 35.0%
GGCAGTTCCAAAAAAAAAAC+AGG + Chr2:54889433-54889452 None:intergenic 35.0%
GGGAGGTTCATTAATCATTA+CGG + Chr2:54889171-54889190 None:intergenic 35.0%
GGTGTATGGTTGTTTGAAAA+TGG - Chr2:54889476-54889495 MsG0280009592.01.T01:intron 35.0%
GGTTAAATTCAATCAACGGA+TGG + Chr2:54891812-54891831 None:intergenic 35.0%
GTAACATCAACGTCATTGAA+TGG + Chr2:54892693-54892712 None:intergenic 35.0%
TAAATGCGAAATCGTTTACC+TGG + Chr2:54889309-54889328 None:intergenic 35.0%
TAACATGCATTCAGCAAAGT+AGG + Chr2:54892529-54892548 None:intergenic 35.0%
TATTATTAGATTAGGGGGTG+TGG - Chr2:54888308-54888327 MsG0280009592.01.T01:CDS 35.0%
TCTCCATTAGCAATTTCCAA+AGG - Chr2:54890080-54890099 MsG0280009592.01.T01:intron 35.0%
TGGTAATAACATGCAAGTTG+GGG + Chr2:54891117-54891136 None:intergenic 35.0%
TGTGGAAAGTAATACAATCC+AGG - Chr2:54892376-54892395 MsG0280009592.01.T01:CDS 35.0%
TGTTTATGAAGGAATGCCAA+TGG + Chr2:54891137-54891156 None:intergenic 35.0%
TTAAATCATCGGATACTGCA+TGG - Chr2:54892102-54892121 MsG0280009592.01.T01:intron 35.0%
TTAATCTTTCTGATGCGGTT+CGG + Chr2:54892086-54892105 None:intergenic 35.0%
TTCATCCTTGATTGTAGACA+AGG - Chr2:54892036-54892055 MsG0280009592.01.T01:intron 35.0%
TTGAATACATCGGAGACAAA+TGG - Chr2:54892255-54892274 MsG0280009592.01.T01:intron 35.0%
TTGTTTGCAACTCTTAGACA+TGG + Chr2:54893373-54893392 None:intergenic 35.0%
TTTGAACAAGACATGATGAC+AGG + Chr2:54893104-54893123 None:intergenic 35.0%
! ACTCCCATTTTCAACAACAA+TGG - Chr2:54891529-54891548 MsG0280009592.01.T01:intron 35.0%
! AGCGTCACACATTTTTGAAT+AGG + Chr2:54892470-54892489 None:intergenic 35.0%
! ATGCGGTTCGGAAAAAAAAT+AGG + Chr2:54892074-54892093 None:intergenic 35.0%
! ATTATTAGATTAGGGGGTGT+GGG - Chr2:54888309-54888328 MsG0280009592.01.T01:CDS 35.0%
! GGTGTCCTTAATGCTAATTT+TGG - Chr2:54890546-54890565 MsG0280009592.01.T01:intron 35.0%
! TCATCATGTCTTGTTCAAAG+AGG - Chr2:54893105-54893124 MsG0280009592.01.T01:intron 35.0%
! TCCATGTTTAGAGTGAATGA+TGG + Chr2:54888534-54888553 None:intergenic 35.0%
! TGCGGTTCGGAAAAAAAATA+GGG + Chr2:54892073-54892092 None:intergenic 35.0%
! TTGGTTGATTCAGATGAAGA+TGG - Chr2:54893588-54893607 MsG0280009592.01.T01:intron 35.0%
! TTTAGAGTGAATGATGGCAA+CGG + Chr2:54888528-54888547 None:intergenic 35.0%
!! TCGCATTAATCGTTGATTCA+AGG + Chr2:54888830-54888849 None:intergenic 35.0%
!! TGAAAGTACTGCTTGAATCA+AGG - Chr2:54888800-54888819 MsG0280009592.01.T01:intron 35.0%
!!! CTCTGTTTTTTTTGTGCGAA+TGG - Chr2:54888984-54889003 MsG0280009592.01.T01:intron 35.0%
!!! TGCATGTCAAATTTTGGAAC+TGG + Chr2:54893316-54893335 None:intergenic 35.0%
AACCAGAGAAAAGGTAAAGC+TGG + Chr2:54892645-54892664 None:intergenic 40.0%
AACCTTCCTTGGTAAATGAC+TGG + Chr2:54893273-54893292 None:intergenic 40.0%
AACTCATTAACCAGAAAGCC+AGG + Chr2:54891668-54891687 None:intergenic 40.0%
AAGGAAGGTTACTATGTTCC+CGG - Chr2:54893283-54893302 MsG0280009592.01.T01:intron 40.0%
AGATAATAACCCCTTCCATC+AGG + Chr2:54889753-54889772 None:intergenic 40.0%
ATGAAGATGTACATAGGGCA+AGG - Chr2:54893657-54893676 MsG0280009592.01.T01:intron 40.0%
ATGCTACCAGTCATTTACCA+AGG - Chr2:54893264-54893283 MsG0280009592.01.T01:intron 40.0%
CAACATACACTTAATCCTCC+TGG + Chr2:54892397-54892416 None:intergenic 40.0%
CAGCGTATTCCTATACACAT+AGG - Chr2:54893522-54893541 MsG0280009592.01.T01:intron 40.0%
CGCCTGTACTTTAATATGTC+AGG - Chr2:54892438-54892457 MsG0280009592.01.T01:CDS 40.0%
CGGGAACACTAATTATGTTG+GGG + Chr2:54891075-54891094 None:intergenic 40.0%
GAAGGAAGAGGTGACAAAAT+TGG - Chr2:54888331-54888350 MsG0280009592.01.T01:CDS 40.0%
GAATCAACGATTAATGCGAG+TGG - Chr2:54888831-54888850 MsG0280009592.01.T01:intron 40.0%
GACCCTTATTGCATGTTGTT+GGG - Chr2:54889898-54889917 MsG0280009592.01.T01:CDS 40.0%
GCAATGTCAATTACCTCTTC+TGG + Chr2:54891950-54891969 None:intergenic 40.0%
GCCATCATTCACTCTAAACA+TGG - Chr2:54888530-54888549 MsG0280009592.01.T01:intron 40.0%
GCGGGAACACTAATTATGTT+GGG + Chr2:54891076-54891095 None:intergenic 40.0%
GCGGTCAAGATTGAATACAT+CGG - Chr2:54892245-54892264 MsG0280009592.01.T01:intron 40.0%
GCTTAGCCCAAAAACATACA+TGG - Chr2:54892986-54893005 MsG0280009592.01.T01:intron 40.0%
GGAAAGTAATACAATCCAGG+AGG - Chr2:54892379-54892398 MsG0280009592.01.T01:CDS 40.0%
GGAATGGTTGTTCTTAACAG+CGG - Chr2:54893211-54893230 MsG0280009592.01.T01:intron 40.0%
GGCCGCAGAAAATATATGTT+AGG - Chr2:54892960-54892979 MsG0280009592.01.T01:intron 40.0%
GTTATCCCCATCATTACACA+CGG + Chr2:54892171-54892190 None:intergenic 40.0%
GTTGTTGAAAATGGGAGTAG+TGG + Chr2:54891527-54891546 None:intergenic 40.0%
GTTTGTGAAGCACACTTTCT+GGG - Chr2:54890365-54890384 MsG0280009592.01.T01:intron 40.0%
TACCAGTCATTTACCAAGGA+AGG - Chr2:54893268-54893287 MsG0280009592.01.T01:intron 40.0%
TACCTCCTTTGATGCATTGA+GGG + Chr2:54891207-54891226 None:intergenic 40.0%
TAGATGATGTTCCCTACCTT+TGG - Chr2:54892760-54892779 MsG0280009592.01.T01:intron 40.0%
TATCCATATCTATCAGGCAC+AGG - Chr2:54892590-54892609 MsG0280009592.01.T01:intron 40.0%
TATTCAATCTTGACCGCAGT+TGG + Chr2:54892242-54892261 None:intergenic 40.0%
TGAAAACATACCAGAGTCTG+CGG + Chr2:54889819-54889838 None:intergenic 40.0%
TGAAGATGTACATAGGGCAA+GGG - Chr2:54893658-54893677 MsG0280009592.01.T01:intron 40.0%
TGACCCTTATTGCATGTTGT+TGG - Chr2:54889897-54889916 MsG0280009592.01.T01:CDS 40.0%
TGTTTGTGAAGCACACTTTC+TGG - Chr2:54890364-54890383 MsG0280009592.01.T01:intron 40.0%
TTACCTCCTTTGATGCATTG+AGG + Chr2:54891208-54891227 None:intergenic 40.0%
TTATCCCCATCATTACACAC+GGG + Chr2:54892170-54892189 None:intergenic 40.0%
TTCATCGTTCATTGTAGGGA+AGG - Chr2:54889395-54889414 MsG0280009592.01.T01:intron 40.0%
TTTGCAACTCTTAGACATGG+AGG + Chr2:54893370-54893389 None:intergenic 40.0%
! AACCATCGTTGATTGAGTGT+TGG + Chr2:54891280-54891299 None:intergenic 40.0%
! ACCATCGTTGATTGAGTGTT+GGG + Chr2:54891279-54891298 None:intergenic 40.0%
! AGGGTCAGATGATTTTGTTG+TGG + Chr2:54888417-54888436 None:intergenic 40.0%
! AGGTGGTCCATGTATGTTTT+TGG + Chr2:54892996-54893015 None:intergenic 40.0%
! CTATGTGACATTTCTGGAGA+GGG - Chr2:54893764-54893783 MsG0280009592.01.T01:CDS 40.0%
! CTTTTGCAACATAAGTCCAC+AGG + Chr2:54892298-54892317 None:intergenic 40.0%
! GAAAGTGTGCTTCACAAACA+AGG + Chr2:54890364-54890383 None:intergenic 40.0%
! GGTAATAACATGCAAGTTGG+GGG + Chr2:54891116-54891135 None:intergenic 40.0%
! GGTGGTCCATGTATGTTTTT+GGG + Chr2:54892995-54893014 None:intergenic 40.0%
! GTAATAACATGCAAGTTGGG+GGG + Chr2:54891115-54891134 None:intergenic 40.0%
! GTAATTTGTGGTACTGCCTA+TGG - Chr2:54890525-54890544 MsG0280009592.01.T01:intron 40.0%
! TTCCAGCTTTACCTTTTCTC+TGG - Chr2:54892640-54892659 MsG0280009592.01.T01:intron 40.0%
! TTTTCAATCCTAACAGCGGT+TGG + Chr2:54889596-54889615 None:intergenic 40.0%
!!! AGTTGTTTTAGAGAAGACGC+AGG + Chr2:54888492-54888511 None:intergenic 40.0%
!!! CGTGTGCCCTGTTTTTTTTT+TGG - Chr2:54889423-54889442 MsG0280009592.01.T01:intron 40.0%
!!! TTTTGGAACTGGATCAGAAC+CGG + Chr2:54893305-54893324 None:intergenic 40.0%
AAAAAGGTGGCCGAAACCAT+GGG - Chr2:54889560-54889579 MsG0280009592.01.T01:intron 45.0%
AAAGACAGTGACAAAGGGCA+TGG - Chr2:54889779-54889798 MsG0280009592.01.T01:CDS 45.0%
AACAACCATACACCTCTCGA+TGG + Chr2:54889470-54889489 None:intergenic 45.0%
AACGGTCATCTATCCAGAAG+AGG - Chr2:54891934-54891953 MsG0280009592.01.T01:intron 45.0%
ACCTTTACCAGCTGTTGGAT+CGG - Chr2:54892343-54892362 MsG0280009592.01.T01:CDS 45.0%
AGACATGTTAGACCATCGAG+AGG - Chr2:54889455-54889474 MsG0280009592.01.T01:intron 45.0%
ATACTGTCATCTACTGGACC+AGG - Chr2:54889288-54889307 MsG0280009592.01.T01:intron 45.0%
ATCCCTCAATGCATCAAAGG+AGG - Chr2:54891202-54891221 MsG0280009592.01.T01:intron 45.0%
ATCTACAACGTACTCCCCTA+GGG + Chr2:54889651-54889670 None:intergenic 45.0%
ATGGTTGTTCTTAACAGCGG+CGG - Chr2:54893214-54893233 MsG0280009592.01.T01:intron 45.0%
CAACAAACCTGTGCCTGTTA+GGG - Chr2:54892139-54892158 MsG0280009592.01.T01:intron 45.0%
CACGCAACTGTTCAATACTG+TGG + Chr2:54891403-54891422 None:intergenic 45.0%
CGCCCAACAACATGCAATAA+GGG + Chr2:54889903-54889922 None:intergenic 45.0%
CGCGGGAACACTAATTATGT+TGG + Chr2:54891077-54891096 None:intergenic 45.0%
CGGATGGCATATGATTACAG+TGG + Chr2:54891796-54891815 None:intergenic 45.0%
CGGATGGCTCCATTGAAATT+GGG + Chr2:54891378-54891397 None:intergenic 45.0%
CGTACATGATCATCGTAGAC+TGG + Chr2:54890131-54890150 None:intergenic 45.0%
CGTGTGCAAGAGGATAGAAT+CGG + Chr2:54891614-54891633 None:intergenic 45.0%
CTATCCTCTTGCACACGTTT+AGG - Chr2:54891617-54891636 MsG0280009592.01.T01:intron 45.0%
CTGATCCCTCAATGCATCAA+AGG - Chr2:54891199-54891218 MsG0280009592.01.T01:intron 45.0%
GAAGCAAATCACACTGACCT+TGG - Chr2:54893569-54893588 MsG0280009592.01.T01:intron 45.0%
GCTGGTAAAGGTTGAACTTC+CGG + Chr2:54892335-54892354 None:intergenic 45.0%
GGGAACATAGTAACCTTCCT+TGG + Chr2:54893284-54893303 None:intergenic 45.0%
GGGGGAAAATGTAATTGAGG+CGG - Chr2:54889725-54889744 MsG0280009592.01.T01:CDS 45.0%
GGTGGGGGAAAATGTAATTG+AGG - Chr2:54889722-54889741 MsG0280009592.01.T01:CDS 45.0%
GTATCCTAAACGTGTGCAAG+AGG + Chr2:54891624-54891643 None:intergenic 45.0%
GTTCAACCTTTACCAGCTGT+TGG - Chr2:54892338-54892357 MsG0280009592.01.T01:CDS 45.0%
GTTCAATACTGTGGATCGGA+TGG + Chr2:54891394-54891413 None:intergenic 45.0%
GTTCCTGTGCCTGATAGATA+TGG + Chr2:54892596-54892615 None:intergenic 45.0%
TCCCAACACTCAATCAACGA+TGG - Chr2:54891275-54891294 MsG0280009592.01.T01:intron 45.0%
TCGATGGTCTAACATGTCTG+AGG + Chr2:54889454-54889473 None:intergenic 45.0%
TCGGATGGCTCCATTGAAAT+TGG + Chr2:54891379-54891398 None:intergenic 45.0%
TGACTATAAGGAACCAGAGC+CGG - Chr2:54893342-54893361 MsG0280009592.01.T01:intron 45.0%
TTACGTGCTTATCAACCTGG+TGG - Chr2:54889683-54889702 MsG0280009592.01.T01:CDS 45.0%
TTATTGCATGTTGTTGGGCG+CGG - Chr2:54889903-54889922 MsG0280009592.01.T01:CDS 45.0%
TTCTGCCCGTGTGTAATGAT+GGG - Chr2:54892162-54892181 MsG0280009592.01.T01:intron 45.0%
! ACACGTTTAGGATACGCTGT+TGG - Chr2:54891629-54891648 MsG0280009592.01.T01:intron 45.0%
! ACTCTTAGACATGGAGGTAC+CGG + Chr2:54893364-54893383 None:intergenic 45.0%
! CTAACAGGCACAGGTTTGTT+GGG + Chr2:54892140-54892159 None:intergenic 45.0%
! GCTATGTGACATTTCTGGAG+AGG - Chr2:54893763-54893782 MsG0280009592.01.T01:CDS 45.0%
! GCTTTGAGCTAACAATCCTG+TGG - Chr2:54892279-54892298 MsG0280009592.01.T01:CDS 45.0%
! GGAATTGTTTCCTGGCTTTC+TGG - Chr2:54891655-54891674 MsG0280009592.01.T01:intron 45.0%
! GTTGGTGAGGAATTGTTTCC+TGG - Chr2:54891647-54891666 MsG0280009592.01.T01:intron 45.0%
! TCTTTTGCAGCTTCTGTGCA+CGG + Chr2:54889260-54889279 None:intergenic 45.0%
! TTAGACCATCGAGAGGTGTA+TGG - Chr2:54889462-54889481 MsG0280009592.01.T01:intron 45.0%
! TTCTGGAGAGGGATGTTTGA+TGG - Chr2:54893775-54893794 MsG0280009592.01.T01:CDS 45.0%
! TTTAGGATACGCTGTTGGTG+AGG - Chr2:54891634-54891653 MsG0280009592.01.T01:intron 45.0%
! TTTGGAACTGGATCAGAACC+GGG + Chr2:54893304-54893323 None:intergenic 45.0%
!! GTTCTTCGATGGTGGGAAAA+AGG - Chr2:54889544-54889563 MsG0280009592.01.T01:intron 45.0%
!!! TTAAAGTTTAAATTTTTTTT+GGG + Chr2:54889191-54889210 None:intergenic 5.0%
!!! TTTAAAGTTTAAATTTTTTT+TGG + Chr2:54889192-54889211 None:intergenic 5.0%
AGAAGACGCAGGAACAGTTC+TGG + Chr2:54888481-54888500 None:intergenic 50.0%
AGATGTACATAGGGCAAGGG+TGG - Chr2:54893661-54893680 MsG0280009592.01.T01:intron 50.0%
ATGCATTGAGGGATCAGCAC+TGG + Chr2:54891196-54891215 None:intergenic 50.0%
CATCTACAACGTACTCCCCT+AGG + Chr2:54889652-54889671 None:intergenic 50.0%
CCAACAAACCTGTGCCTGTT+AGG - Chr2:54892138-54892157 MsG0280009592.01.T01:intron 50.0%
CCTAACAGGCACAGGTTTGT+TGG + Chr2:54892141-54892160 None:intergenic 50.0%
CTTTCTCAACAGCCACTGTG+CGG - Chr2:54888448-54888467 MsG0280009592.01.T01:CDS 50.0%
GAAAAAGGTGGCCGAAACCA+TGG - Chr2:54889559-54889578 MsG0280009592.01.T01:intron 50.0%
GCGATACGTTCTTCGATGGT+GGG - Chr2:54889537-54889556 MsG0280009592.01.T01:intron 50.0%
GCGCCCAACAACATGCAATA+AGG + Chr2:54889904-54889923 None:intergenic 50.0%
GTAATTGAGGCGGTACCTGA+TGG - Chr2:54889735-54889754 MsG0280009592.01.T01:CDS 50.0%
GTTCTGCCCGTGTGTAATGA+TGG - Chr2:54892161-54892180 MsG0280009592.01.T01:intron 50.0%
GTTTGGCCTACTAGCAACGA+CGG - Chr2:54889515-54889534 MsG0280009592.01.T01:intron 50.0%
TCCGATCCAACAGCTGGTAA+AGG + Chr2:54892347-54892366 None:intergenic 50.0%
TCTACAACGTACTCCCCTAG+GGG + Chr2:54889650-54889669 None:intergenic 50.0%
TCTGCCCGTGTGTAATGATG+GGG - Chr2:54892163-54892182 MsG0280009592.01.T01:intron 50.0%
TGGATCGGACGTTGAATCTG+TGG - Chr2:54892358-54892377 MsG0280009592.01.T01:CDS 50.0%
TGTATCTGGTGGAACCCCTA+GGG - Chr2:54889633-54889652 MsG0280009592.01.T01:CDS 50.0%
TTGTATCTGGTGGAACCCCT+AGG - Chr2:54889632-54889651 MsG0280009592.01.T01:CDS 50.0%
! CACTGTACAGCCCATTTTGC+AGG - Chr2:54888901-54888920 MsG0280009592.01.T01:intron 50.0%
! CTAGGGGAGTACGTTGTAGA+TGG - Chr2:54889650-54889669 MsG0280009592.01.T01:CDS 50.0%
! TCGCATCAAAGTGCCAACTG+CGG - Chr2:54892226-54892245 MsG0280009592.01.T01:intron 50.0%
! TTAGATTAGGGGGTGTGGGA+AGG - Chr2:54888313-54888332 MsG0280009592.01.T01:CDS 50.0%
!! CTTCGATGGTGGGAAAAAGG+TGG - Chr2:54889547-54889566 MsG0280009592.01.T01:intron 50.0%
CACAAGCAGGCCCATGGTTT+CGG + Chr2:54889573-54889592 None:intergenic 55.0%
GACGGCGATACGTTCTTCGA+TGG - Chr2:54889533-54889552 MsG0280009592.01.T01:intron 55.0%
GGAGAAGAGGAACAGTACGC+GGG + Chr2:54891094-54891113 None:intergenic 55.0%
GGCGATACGTTCTTCGATGG+TGG - Chr2:54889536-54889555 MsG0280009592.01.T01:intron 55.0%
GGGAGAAGAGGAACAGTACG+CGG + Chr2:54891095-54891114 None:intergenic 55.0%
GTATCGCCGTCGTTGCTAGT+AGG + Chr2:54889524-54889543 None:intergenic 55.0%
GTATCTGGTGGAACCCCTAG+GGG - Chr2:54889634-54889653 MsG0280009592.01.T01:CDS 55.0%
TAACAGCGGTTGGCACAAGC+AGG + Chr2:54889586-54889605 None:intergenic 55.0%
TCAACGTCCGATCCAACAGC+TGG + Chr2:54892353-54892372 None:intergenic 55.0%
TGAGGCGGTACCTGATGGAA+GGG - Chr2:54889740-54889759 MsG0280009592.01.T01:CDS 55.0%
TGCGAGTAATCCGCAGACTC+TGG - Chr2:54889806-54889825 MsG0280009592.01.T01:CDS 55.0%
TGCTTGTGCCAACCGCTGTT+AGG - Chr2:54889585-54889604 MsG0280009592.01.T01:intron 55.0%
TTGAGGCGGTACCTGATGGA+AGG - Chr2:54889739-54889758 MsG0280009592.01.T01:CDS 55.0%
! AGTCTGCGGATTACTCGCAC+GGG + Chr2:54889805-54889824 None:intergenic 55.0%
! ATGCAAGTTGGGGGGAGAAG+AGG + Chr2:54891107-54891126 None:intergenic 55.0%
! GAGTCTGCGGATTACTCGCA+CGG + Chr2:54889806-54889825 None:intergenic 55.0%
CACACGGGCAGAACCCTAAC+AGG + Chr2:54892155-54892174 None:intergenic 60.0%
CCCGTCAAGAGGAATCGGTG+GGG - Chr2:54889706-54889725 MsG0280009592.01.T01:CDS 60.0%
CCGTCAAGAGGAATCGGTGG+GGG - Chr2:54889707-54889726 MsG0280009592.01.T01:CDS 60.0%
GAGGCGGTACCTGATGGAAG+GGG - Chr2:54889741-54889760 MsG0280009592.01.T01:CDS 60.0%
GCCCGTCAAGAGGAATCGGT+GGG - Chr2:54889705-54889724 MsG0280009592.01.T01:CDS 60.0%
GGCAGAACCCTAACAGGCAC+AGG + Chr2:54892149-54892168 None:intergenic 60.0%
GGTGGCCCGTCAAGAGGAAT+CGG - Chr2:54889701-54889720 MsG0280009592.01.T01:CDS 60.0%
TCTGGCACGTTACCGCACAG+TGG + Chr2:54888463-54888482 None:intergenic 60.0%
! ATTCCTCTTGACGGGCCACC+AGG + Chr2:54889701-54889720 None:intergenic 60.0%
! TAGGGGGTGTGGGAAGGAAG+AGG - Chr2:54888319-54888338 MsG0280009592.01.T01:CDS 60.0%
!! AGACATGGAGGTACCGGCTC+TGG + Chr2:54893358-54893377 None:intergenic 60.0%
!! CCCCACCGATTCCTCTTGAC+GGG + Chr2:54889709-54889728 None:intergenic 60.0%
!! CCCCCACCGATTCCTCTTGA+CGG + Chr2:54889710-54889729 None:intergenic 60.0%
CAACCTGGTGGCCCGTCAAG+AGG - Chr2:54889695-54889714 MsG0280009592.01.T01:CDS 65.0%
GGCCCGTCAAGAGGAATCGG+TGG - Chr2:54889704-54889723 MsG0280009592.01.T01:CDS 65.0%
GGTTGGCACAAGCAGGCCCA+TGG + Chr2:54889579-54889598 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 54888199 54893794 54888199 ID=MsG0280009592.01;Name=MsG0280009592.01
Chr2 mRNA 54888199 54893794 54888199 ID=MsG0280009592.01.T01;Parent=MsG0280009592.01;Name=MsG0280009592.01.T01;_AED=0.38;_eAED=0.38;_QI=0|0|0|0.25|1|1|8|0|442
Chr2 exon 54893748 54893794 54893748 ID=MsG0280009592.01.T01:exon:20665;Parent=MsG0280009592.01.T01
Chr2 exon 54892684 54892749 54892684 ID=MsG0280009592.01.T01:exon:20666;Parent=MsG0280009592.01.T01
Chr2 exon 54892271 54892581 54892271 ID=MsG0280009592.01.T01:exon:20667;Parent=MsG0280009592.01.T01
Chr2 exon 54892166 54892206 54892166 ID=MsG0280009592.01.T01:exon:20668;Parent=MsG0280009592.01.T01
Chr2 exon 54889617 54889940 54889617 ID=MsG0280009592.01.T01:exon:20669;Parent=MsG0280009592.01.T01
Chr2 exon 54889332 54889387 54889332 ID=MsG0280009592.01.T01:exon:20670;Parent=MsG0280009592.01.T01
Chr2 exon 54888549 54888762 54888549 ID=MsG0280009592.01.T01:exon:20671;Parent=MsG0280009592.01.T01
Chr2 exon 54888199 54888468 54888199 ID=MsG0280009592.01.T01:exon:20672;Parent=MsG0280009592.01.T01
Chr2 CDS 54893748 54893794 54893748 ID=MsG0280009592.01.T01:cds;Parent=MsG0280009592.01.T01
Chr2 CDS 54892684 54892749 54892684 ID=MsG0280009592.01.T01:cds;Parent=MsG0280009592.01.T01
Chr2 CDS 54892271 54892581 54892271 ID=MsG0280009592.01.T01:cds;Parent=MsG0280009592.01.T01
Chr2 CDS 54892166 54892206 54892166 ID=MsG0280009592.01.T01:cds;Parent=MsG0280009592.01.T01
Chr2 CDS 54889617 54889940 54889617 ID=MsG0280009592.01.T01:cds;Parent=MsG0280009592.01.T01
Chr2 CDS 54889332 54889387 54889332 ID=MsG0280009592.01.T01:cds;Parent=MsG0280009592.01.T01
Chr2 CDS 54888549 54888762 54888549 ID=MsG0280009592.01.T01:cds;Parent=MsG0280009592.01.T01
Chr2 CDS 54888199 54888468 54888199 ID=MsG0280009592.01.T01:cds;Parent=MsG0280009592.01.T01
Gene Sequence

>MsG0280009592.01.T01

ATGGCATATCTCAAAAGGATAGATGGGATGAATCACTATGGAGTTAAGGAGTTTGAATGTCCGTGCACAGAAGCTGCAAAAGAATCATTGAATACTGTCATCTACTGGACCAGGGAAGGATATCCGTGTGCCCTGTTTTTTTTTTGGAACTGCCTCAGACATGTTAGACCATCGAGAGGTGTATGGTTGTTTGAAAATGGAAAACAAAGAAGTAGGGTTTGGCCTACTAGCAACGACGGCGATACGTTCTTCGATGGTGGGAAAAAGGTGGCCGAAACCATGGGCCTGCTTGTGCCAACCGCTGTTAGGATTGAAAATTTAGGAGACAATTTTTTGTATCTGGTGGAACCCCTAGGGGAGTACGTTGTAGATGGTGCCGAAAATTTACGTGCTTATCAACCTGGTGGCCCGTCAAGAGGAATCGTGACAAAGGGCATGGCCCGTGCGAGTAATCCGCAGACTCTGACAAGGATATCGGTGTGCCCTATTTTTTTTCCGAACCGCATCAGAAAGATTAAATCATCGGATACTGCATGGTTGTTTTCGTCACCCAACAAACCTGTGCCTGTTAGGGTTCTGCCCGTGTGTAATGATGGGGATAACTACTTGATTGGTGGTCAGGAGGTGGCGGCATATTTTCGCATCAAAGTGCCAACTGCGGTCAAGATTGAATACATCGGAGACAAATGGTGCTTTGAGCTAACAATCCTGTGGACTTATGTTGCAAAAGATAGGAAATGTTTACCGGAAGTTCAACCTTTACCAGCTGTTGGATCGGACGTTGAATCTGCACAGGAACTTCTTTTCATATGTGTAGGTCGTCTTCCAGCTTTACCTTTTCTCTGCGGCGGTTCCAAAAACCATGATTCAGAAGAAGAATGCTACCAGTCATTTACCAAGGAAGGTTACTATGTTCCCGGTTCTGATCCAGTTCCAAAATTTGACATGCAATATGATGACTATAAGGAACCAGAGCCGGTACCTCCATGTCTAAGAGTTGCAAACAATTCAGGGGAGATTTTAGTTACTTCTGCACATCTTCGTCCAACTTATGCTGTTCGTATTCCTATACACATAGGAGTCGAAATTCTAAAGGCAGATCAGAAGCAAATCACACTGACCTTGGTTGATTCAGATGAAGATGGTATTGAAGATATCAACTGTGAGGTTTTTTTTGAAGATGGTCATAAGATGAAGATGTACATAGGGCAAGGGTGGAATGATTTTGTTAAGAAATGTAATGTGGAAGTTAATGATAGACTTTTGTTTCAAATTTTCAACAATAATCCTTTCAATTGCTATGTGACATTTCTGGAGAGGGATGTTTGA
Protein sequence

>MsG0280009592.01.T01

MAYLKRIDGMNHYGVKEFECPCTEAAKESLNTVIYWTREGYPCALFFFWNCLRHVRPSRGVWLFENGKQRSRVWPTSNDGDTFFDGGKKVAETMGLLVPTAVRIENLGDNFLYLVEPLGEYVVDGAENLRAYQPGGPSRGIVTKGMARASNPQTLTRISVCPIFFPNRIRKIKSSDTAWLFSSPNKPVPVRVLPVCNDGDNYLIGGQEVAAYFRIKVPTAVKIEYIGDKWCFELTILWTYVAKDRKCLPEVQPLPAVGSDVESAQELLFICVGRLPALPFLCGGSKNHDSEEECYQSFTKEGYYVPGSDPVPKFDMQYDDYKEPEPVPPCLRVANNSGEILVTSAHLRPTYAVRIPIHIGVEILKADQKQITLTLVDSDEDGIEDINCEVFFEDGHKMKMYIGQGWNDFVKKCNVEVNDRLLFQIFNNNPFNCYVTFLERDV*