AlfalfaGEDB | MsG0280009782.01

M. sativa cultivar ZhongmuNo.1 / MsG0280009782.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009782.01.T01	RHN74679.1	97.087	103	3	0	1	103	1	103	3.83E-64	199

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0280009781.01	MsG0280009782.01	0.905087	6.215699e-80	9.896953e-76

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 43 sgRNAs with CRISPR-Local

Find 58 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCCAACCAACATTGA+CGG	0.549872	2:-57868999	None:intergenic
AAACACCGTCAATGTTGGTT+GGG	0.487542	2:+57868994	MsG0280009782.01.T01:CDS
AAAGCCATAGGTGAACTTCA+TGG	0.491487	2:-57868795	None:intergenic
AAAGTGGATTGGCGCCGTTA+CGG	0.506853	2:+57868967	MsG0280009782.01.T01:CDS
AACGGTGGGTTTCGGTGAAG+CGG	0.555250	2:+57868856	MsG0280009782.01.T01:CDS
AAGAAGTGGTGACCGGCTAC+TGG	0.454076	2:+57868939	MsG0280009782.01.T01:CDS
AATTTGGACACGTGGGTCTG+AGG	0.572286	2:+57869082	MsG0280009782.01.T01:CDS
ACCCAATCTCTTCCAATTAC+CGG	0.404661	2:-57869023	None:intergenic
ATGGCCATGAAGTTCACCTA+TGG	0.568344	2:+57868791	MsG0280009782.01.T01:CDS
ATTGGAAGAGATTGGGTTAC+CGG	0.364909	2:+57869029	MsG0280009782.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCCCAACCAACATTGA+CGG	-	Chr2:57869002-57869021	None:intergenic	35.0%
AAAGCCATAGGTGAACTTCA+TGG	-	Chr2:57868798-57868817	None:intergenic	40.0%
ACCCAATCTCTTCCAATTAC+CGG	-	Chr2:57869026-57869045	None:intergenic	40.0%
ATTGGAAGAGATTGGGTTAC+CGG	+	Chr2:57869029-57869048	MsG0280009782.01.T01:CDS	40.0%
CACGCCGTTAAATTCACAAA+CGG	-	Chr2:57868900-57868919	None:intergenic	40.0%
GGAGCCGTTTGTGAATTTAA+CGG	+	Chr2:57868893-57868912	MsG0280009782.01.T01:CDS	40.0%
TAAACACCGTCAATGTTGGT+TGG	+	Chr2:57868993-57869012	MsG0280009782.01.T01:CDS	40.0%
ATGGCCATGAAGTTCACCTA+TGG	+	Chr2:57868791-57868810	MsG0280009782.01.T01:CDS	45.0%
CGTTTGTGAATTTAACGGCG+TGG	+	Chr2:57868898-57868917	MsG0280009782.01.T01:CDS	45.0%
GAGGTAAACACCGTCAATGT+TGG	+	Chr2:57868989-57869008	MsG0280009782.01.T01:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	57868791	57869102	57868791	ID=MsG0280009782.01;Name=MsG0280009782.01
Chr2	mRNA	57868791	57869102	57868791	ID=MsG0280009782.01.T01;Parent=MsG0280009782.01;Name=MsG0280009782.01.T01;_AED=0.44;_eAED=0.44;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|103
Chr2	exon	57868791	57869102	57868791	ID=MsG0280009782.01.T01:exon:38376;Parent=MsG0280009782.01.T01
Chr2	CDS	57868791	57869102	57868791	ID=MsG0280009782.01.T01:cds;Parent=MsG0280009782.01.T01

Gene Sequence	>MsG0280009782.01.T01 ATGGCCATGAAGTTCACCTATGGCTTTTGGAAAAACGGGCCGGCCCAGGGCTTTTTCTTGGGCCAAACGGTGGGTTTCGGTGAAGCGGCAAGAGTAACTGACGGAGCCGTTTGTGAATTTAACGGCGTGGACCATACCGTCTCCGTCGAAGAAGTGGTGACCGGCTACTGGCTCGTAAAGTGGATTGGCGCCGTTACGGAGGTAAACACCGTCAATGTTGGTTGGGATTTTGCCGGTAATTGGAAGAGATTGGGTTACCGGGTGTTCCGGTACTGGGGCGAAGTTACCGGCAATTTGGACACGTGGGTCTGA
Protein sequence	>MsG0280009782.01.T01 MAMKFTYGFWKNGPAQGFFLGQTVGFGEAARVTDGAVCEFNGVDHTVSVEEVVTGYWLVKWIGAVTEVNTVNVGWDFAGNWKRLGYRVFRYWGEVTGNLDTWV*