AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010716.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010716.01.T01 MTR_2g090250 91.549 142 12 0 1 142 210 351 6.03e-78 249
MsG0280010716.01.T01 MTR_2g090250 55.789 190 30 3 112 248 432 620 8.89e-54 185
MsG0280010716.01.T01 MTR_2g090410 80.420 143 26 1 1 141 912 1054 1.29e-62 213
MsG0280010716.01.T01 MTR_2g090410 51.397 179 33 2 143 267 1175 1353 6.71e-47 167
MsG0280010716.01.T01 MTR_2g090410 52.414 145 64 3 1 141 208 351 2.86e-32 125
MsG0280010716.01.T01 MTR_2g090410 41.489 188 53 5 112 244 435 620 4.32e-29 116
MsG0280010716.01.T01 MTR_2g013720 48.649 148 67 3 1 141 213 358 3.57e-35 133
MsG0280010716.01.T01 MTR_2g013720 43.046 151 40 2 143 248 479 628 2.68e-22 96.7
MsG0280010716.01.T01 MTR_7g063010 37.267 161 49 4 143 254 464 621 2.11e-21 94.0
MsG0280010716.01.T01 MTR_7g063010 32.836 134 86 3 8 141 214 343 4.61e-15 75.1
MsG0280010716.01.T01 MTR_7g063030 37.736 159 51 4 143 254 462 619 5.32e-21 92.8
MsG0280010716.01.T01 MTR_7g063030 33.333 135 82 4 8 140 212 340 1.72e-14 73.6
MsG0280010716.01.T01 MTR_7g063030 37.736 159 51 4 143 254 468 625 6.40e-21 92.4
MsG0280010716.01.T01 MTR_7g063030 33.333 135 82 4 8 140 218 346 1.61e-14 73.6
MsG0280010716.01.T01 MTR_4g105070 36.184 152 45 3 143 245 480 628 7.38e-20 89.4
MsG0280010716.01.T01 MTR_4g105070 33.793 145 89 4 1 140 217 359 6.03e-11 62.8
MsG0280010716.01.T01 MTR_7g062890 38.411 151 45 4 143 246 464 613 1.99e-18 85.1
MsG0280010716.01.T01 MTR_7g062890 32.836 134 84 3 8 140 214 342 2.88e-14 72.8
MsG0280010716.01.T01 MTR_1g052275 37.748 151 46 4 143 246 468 617 1.14e-17 82.8
MsG0280010716.01.T01 MTR_1g052275 34.286 140 78 4 7 140 215 346 7.24e-14 71.6
MsG0280010716.01.T01 MTR_7g062700 37.748 151 46 4 143 246 468 617 1.25e-17 82.8
MsG0280010716.01.T01 MTR_7g062700 32.192 146 85 5 1 140 209 346 2.43e-12 67.0
MsG0280010716.01.T01 MTR_7g062950 36.296 135 81 3 8 140 213 344 2.04e-17 82.0
MsG0280010716.01.T01 MTR_7g062950 37.748 151 46 4 143 246 466 615 3.20e-17 81.6
MsG0280010716.01.T01 MTR_7g062920 38.514 148 43 4 143 243 466 612 2.17e-17 82.0
MsG0280010716.01.T01 MTR_7g062920 32.394 142 88 4 1 140 209 344 4.42e-14 72.4
MsG0280010716.01.T01 MTR_7g062990 35.443 158 52 5 143 251 472 628 2.40e-17 82.0
MsG0280010716.01.T01 MTR_7g062990 34.559 136 83 5 8 140 217 349 2.60e-12 67.0
MsG0280010716.01.T01 MTR_7g062940 37.086 151 47 4 143 246 465 614 3.17e-17 81.6
MsG0280010716.01.T01 MTR_7g062940 35.556 135 81 4 8 140 213 343 4.61e-15 75.1
MsG0280010716.01.T01 MTR_7g062750 37.086 151 47 4 143 246 468 617 5.29e-17 80.9
MsG0280010716.01.T01 MTR_7g062750 32.857 140 78 5 8 140 216 346 2.97e-12 67.0
MsG0280010716.01.T01 MTR_7g062660 35.811 148 47 4 143 243 459 605 7.51e-17 80.5
MsG0280010716.01.T01 MTR_7g062660 34.328 134 78 4 8 140 213 337 1.14e-13 70.9
MsG0280010716.01.T01 MTR_7g062770 32.692 156 57 2 143 251 470 624 9.74e-17 80.1
MsG0280010716.01.T01 MTR_7g062770 32.857 140 78 5 8 140 218 348 1.06e-11 65.1
MsG0280010716.01.T01 MTR_5g035910 38.158 152 46 5 143 247 471 621 1.22e-16 79.7
MsG0280010716.01.T01 MTR_5g035910 31.852 135 85 3 8 140 220 349 9.93e-11 62.4
MsG0280010716.01.T01 MTR_3g068025 36.538 156 51 5 143 251 474 628 1.84e-16 79.3
MsG0280010716.01.T01 MTR_7g115740 30.921 152 54 2 143 245 407 556 1.55e-14 73.6
MsG0280010716.01.T01 MTR_7g116130 30.719 153 54 3 143 245 479 629 1.87e-14 73.6
MsG0280010716.01.T01 MTR_3g415610 30.719 153 59 3 143 248 348 500 5.24e-13 68.9
MsG0280010716.01.T01 MTR_7g062680 37.748 151 46 4 143 246 476 625 1.31e-12 67.8
MsG0280010716.01.T01 MTR_7g062850 35.714 140 75 6 8 137 182 316 2.22e-11 63.9
MsG0280010716.01.T01 MTR_1g081665 30.769 117 69 1 143 247 553 669 2.70e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010716.01.T01 AT4G28350 48.276 145 70 2 1 141 210 353 4.06e-30 119
MsG0280010716.01.T01 AT4G28350 38.356 146 45 1 143 243 475 620 5.66e-24 101
MsG0280010716.01.T01 AT4G04960 45.098 153 65 2 1 141 206 351 8.26e-25 103
MsG0280010716.01.T01 AT4G04960 36.667 150 47 3 143 245 475 623 1.85e-20 91.3
MsG0280010716.01.T01 AT4G04960 45.098 153 65 2 1 141 206 351 8.95e-25 103
MsG0280010716.01.T01 AT4G04960 38.835 103 51 3 143 243 475 567 1.58e-12 67.8
MsG0280010716.01.T01 AT3G53810 39.241 158 46 5 143 251 472 628 1.62e-22 97.1
MsG0280010716.01.T01 AT3G53810 29.412 136 91 3 8 141 219 351 1.43e-14 73.9
MsG0280010716.01.T01 AT1G15530 38.667 150 42 4 143 244 485 632 1.38e-19 88.6
MsG0280010716.01.T01 AT5G59270 35.762 151 44 3 143 244 493 639 1.64e-18 85.5
MsG0280010716.01.T01 AT5G59270 35.762 151 44 3 143 244 474 620 1.85e-18 85.1
MsG0280010716.01.T01 AT2G37710 34.395 157 54 2 143 251 472 627 1.88e-18 85.1
MsG0280010716.01.T01 AT5G59270 35.762 151 44 3 143 244 477 623 1.89e-18 85.1
MsG0280010716.01.T01 AT3G55550 34.591 159 52 4 143 252 472 627 5.52e-18 84.0
MsG0280010716.01.T01 AT3G55550 33.333 141 81 5 7 140 215 349 1.90e-16 79.3
MsG0280010716.01.T01 AT4G02410 34.969 163 57 3 143 257 480 641 6.88e-18 83.6
MsG0280010716.01.T01 AT4G02410 29.730 148 95 4 1 141 214 359 8.47e-13 68.6
MsG0280010716.01.T01 AT1G29730 33.125 160 54 3 143 252 797 953 1.39e-17 82.8
MsG0280010716.01.T01 AT1G29730 33.125 160 54 3 143 252 765 921 1.43e-17 82.8
MsG0280010716.01.T01 AT3G45440 33.758 157 53 3 143 251 466 619 2.18e-17 82.0
MsG0280010716.01.T01 AT3G45440 31.111 135 91 2 7 140 212 345 7.31e-12 65.9
MsG0280010716.01.T01 AT3G45440 33.758 157 53 3 143 251 466 619 2.18e-17 82.0
MsG0280010716.01.T01 AT3G45440 31.111 135 91 2 7 140 212 345 7.31e-12 65.9
MsG0280010716.01.T01 AT3G45440 33.758 157 53 3 143 251 466 619 2.18e-17 82.0
MsG0280010716.01.T01 AT3G45440 31.111 135 91 2 7 140 212 345 7.31e-12 65.9
MsG0280010716.01.T01 AT3G45440 33.758 157 53 3 143 251 519 672 2.26e-17 82.0
MsG0280010716.01.T01 AT3G45440 31.111 135 91 2 7 140 265 398 7.78e-12 65.9
MsG0280010716.01.T01 AT4G02420 35.032 157 53 4 143 251 475 630 2.53e-17 82.0
MsG0280010716.01.T01 AT4G02420 32.432 148 89 3 1 141 211 354 2.63e-15 75.9
MsG0280010716.01.T01 AT5G59260 34.641 153 47 3 143 246 480 628 3.27e-17 81.6
MsG0280010716.01.T01 AT5G59260 33.333 132 83 3 8 139 231 357 6.72e-15 74.7
MsG0280010716.01.T01 AT5G60280 37.857 140 83 3 1 140 207 342 3.59e-17 81.6
MsG0280010716.01.T01 AT3G45430 34.868 152 48 3 143 246 468 616 9.70e-17 80.1
MsG0280010716.01.T01 AT3G45430 30.714 140 86 5 7 140 213 347 1.75e-11 64.7
MsG0280010716.01.T01 AT3G45430 34.868 152 48 3 143 246 468 616 9.70e-17 80.1
MsG0280010716.01.T01 AT3G45430 30.714 140 86 5 7 140 213 347 1.75e-11 64.7
MsG0280010716.01.T01 AT3G45430 34.868 152 48 3 143 246 468 616 9.70e-17 80.1
MsG0280010716.01.T01 AT3G45430 30.714 140 86 5 7 140 213 347 1.75e-11 64.7
MsG0280010716.01.T01 AT5G60300 35.135 148 45 3 143 242 468 612 1.50e-16 79.7
MsG0280010716.01.T01 AT5G60300 35.135 148 45 3 143 242 468 612 1.50e-16 79.7
MsG0280010716.01.T01 AT5G60300 35.135 148 45 3 143 242 468 612 1.75e-16 79.7
MsG0280010716.01.T01 AT4G29050 32.847 137 77 5 8 137 216 344 2.64e-16 79.0
MsG0280010716.01.T01 AT4G29050 32.847 137 77 5 8 137 230 358 2.73e-16 79.0
MsG0280010716.01.T01 AT5G01540 36.486 148 46 5 143 245 494 638 4.61e-16 78.2
MsG0280010716.01.T01 AT5G01540 35.862 145 84 8 2 139 227 369 1.80e-14 73.6
MsG0280010716.01.T01 AT3G08870 35.135 148 48 5 143 245 516 660 5.25e-16 78.2
MsG0280010716.01.T01 AT3G08870 34.058 138 84 5 8 139 255 391 7.97e-12 65.5
MsG0280010716.01.T01 AT5G01550 37.838 148 44 5 143 245 508 652 5.74e-16 77.8
MsG0280010716.01.T01 AT5G01550 33.099 142 85 6 6 139 242 381 8.19e-16 77.4
MsG0280010716.01.T01 AT3G08870 35.135 148 48 5 143 245 495 639 5.87e-16 77.8
MsG0280010716.01.T01 AT3G08870 34.058 138 84 5 8 139 234 370 7.82e-12 65.5
MsG0280010716.01.T01 AT5G01560 35.172 145 46 3 143 242 491 632 1.48e-15 76.6
MsG0280010716.01.T01 AT5G01560 35.461 141 80 7 8 139 227 365 7.10e-15 74.7
MsG0280010716.01.T01 AT3G59740 31.343 134 89 3 9 140 204 336 1.19e-14 73.9
MsG0280010716.01.T01 AT3G59740 30.864 162 64 2 143 257 462 622 9.59e-12 65.5
MsG0280010716.01.T01 AT1G70130 32.576 132 84 4 8 137 206 334 2.87e-14 72.8
MsG0280010716.01.T01 AT1G70110 33.088 136 84 4 8 139 214 346 2.02e-13 70.5
MsG0280010716.01.T01 AT3G59750 29.078 141 85 4 9 141 174 307 2.14e-13 70.1
MsG0280010716.01.T01 AT2G43700 30.370 135 86 5 9 139 184 314 2.16e-13 70.1
MsG0280010716.01.T01 AT2G43700 30.370 135 86 5 9 139 184 314 2.16e-13 70.1
MsG0280010716.01.T01 AT2G43700 30.370 135 86 5 9 139 184 314 2.16e-13 70.1
MsG0280010716.01.T01 AT2G43700 30.370 135 86 5 9 139 184 314 2.16e-13 70.1
MsG0280010716.01.T01 AT2G43700 30.370 135 86 5 9 139 208 338 2.19e-13 70.1
MsG0280010716.01.T01 AT5G60310 28.249 177 112 6 1 164 207 381 5.70e-13 68.9
MsG0280010716.01.T01 AT5G60310 37.037 108 57 4 143 242 467 571 8.93e-12 65.5
MsG0280010716.01.T01 AT3G45420 29.932 147 84 3 7 140 213 353 1.09e-12 68.2
MsG0280010716.01.T01 AT5G60270 30.986 142 93 5 1 139 204 343 1.22e-12 68.2
MsG0280010716.01.T01 AT3G59700 30.872 149 55 2 143 244 464 611 2.73e-12 67.0
MsG0280010716.01.T01 AT3G59700 29.851 134 92 2 9 141 210 342 6.95e-12 65.9
MsG0280010716.01.T01 AT3G59730 28.148 135 94 3 9 141 206 339 7.84e-12 65.5
MsG0280010716.01.T01 AT3G59730 28.148 135 94 3 9 141 206 339 8.38e-12 65.5
MsG0280010716.01.T01 AT3G59730 62.000 50 18 1 143 192 464 512 3.58e-11 63.5
MsG0280010716.01.T01 AT3G45410 35.036 137 82 4 7 140 213 345 8.53e-12 65.5
MsG0280010716.01.T01 AT3G45330 32.394 142 91 4 1 140 213 351 1.63e-11 64.7

Find 56 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACCTTTCTGGAGTTATTA+TGG 0.182807 2:+73817041 MsG0280010716.01.T01:CDS
TTCACAATCTGTCTCATTAT+TGG 0.183345 2:-73818167 None:intergenic
AGCATGAATCTTAACCTTTC+TGG 0.238920 2:+73817030 MsG0280010716.01.T01:CDS
GGAGGATTCTCTGAAGAAAA+TGG 0.241090 2:+73817390 MsG0280010716.01.T01:CDS
AGCTGAGAGATTGCTTCATT+TGG 0.287953 2:+73818109 MsG0280010716.01.T01:CDS
CGAATCTGATGAAGAAAATA+TGG 0.289809 2:+73818216 MsG0280010716.01.T01:CDS
CCTTCATTTGTCCCTCATAA+AGG 0.307672 2:+73817186 MsG0280010716.01.T01:CDS
ACAGATTGTGAAAATGTTAC+AGG 0.327026 2:+73818178 MsG0280010716.01.T01:CDS
GCTATAGATGTAGGAATAAC+TGG 0.343012 2:+73817228 MsG0280010716.01.T01:CDS
CAAGGATATGAATGCTAGAT+TGG 0.350880 2:+73817794 MsG0280010716.01.T01:CDS
GAGAAGAAGAAATTGAAGAT+TGG 0.362361 2:+73817313 MsG0280010716.01.T01:CDS
CAAGAGATTCATGCTGCAAC+AGG 0.386337 2:+73817369 MsG0280010716.01.T01:CDS
GCTGAGAGATTGCTTCATTT+GGG 0.388864 2:+73818110 MsG0280010716.01.T01:CDS
ACAAAAGTACTCGGAACATT+AGG 0.391344 2:+73817870 MsG0280010716.01.T01:CDS
AGAAGAAGAAATTGAAGATT+GGG 0.399090 2:+73817314 MsG0280010716.01.T01:CDS
AAGGATATGAATGCTAGATT+GGG 0.432577 2:+73817795 MsG0280010716.01.T01:CDS
AAATATGGAGAAAGTTTACT+TGG 0.433174 2:+73818231 MsG0280010716.01.T01:CDS
ATTATGGATGAAACTTATGT+TGG 0.459041 2:+73817057 MsG0280010716.01.T01:CDS
CTCATTATTGGTCTAACACC+AGG 0.464809 2:-73818155 None:intergenic
GTTGGATTCTGTGCAGCCAC+GGG 0.483863 2:+73817075 MsG0280010716.01.T01:CDS
ATAGTGTTAACATTCTTGCT+TGG 0.486909 2:+73817109 MsG0280010716.01.T01:CDS
TGATGAAAGGTTGAAGGCTA+AGG 0.488714 2:+73818067 MsG0280010716.01.T01:CDS
CCTTTATGAGGGACAAATGA+AGG 0.495843 2:-73817186 None:intergenic
GAGGATTCTCTGAAGAAAAT+GGG 0.502372 2:+73817391 MsG0280010716.01.T01:CDS
TTAAGATTCATGCTGATAAG+AGG 0.503976 2:-73817021 None:intergenic
AAGATTGGGAACTAGAGTAT+TGG 0.513958 2:+73817328 MsG0280010716.01.T01:CDS
AGATAAACGTTACAATGGCT+CGG 0.520066 2:+73816974 None:intergenic
TGGCTCGGGCAGGACGAAAG+AGG 0.522709 2:+73816989 MsG0280010716.01.T01:CDS
CATCCATAATAACTCCAGAA+AGG 0.523700 2:-73817044 None:intergenic
GGAGCAAAGGCTATAGATGT+AGG 0.526071 2:+73817219 MsG0280010716.01.T01:CDS
CATTTGTCCCTCATAAAGGA+TGG 0.529519 2:+73817190 MsG0280010716.01.T01:CDS
CTGTGTTCAAATTCAGACCC+TGG 0.534048 2:+73818137 MsG0280010716.01.T01:CDS
AACGTTACAATGGCTCGGGC+AGG 0.535528 2:+73816979 None:intergenic
CTGTTGCAGCATGAATCTCT+TGG 0.538800 2:-73817368 None:intergenic
TGCTGTTGATGAAAGGTTGA+AGG 0.543304 2:+73818061 MsG0280010716.01.T01:CDS
GATAAACGTTACAATGGCTC+GGG 0.545172 2:+73816975 None:intergenic
TGTTGGATTCTGTGCAGCCA+CGG 0.552064 2:+73817074 MsG0280010716.01.T01:CDS
ATTCTCTATAAGAGAAACAA+AGG 0.553339 2:+73817291 MsG0280010716.01.T01:CDS
GATGAAAGGTTGAAGGCTAA+GGG 0.580650 2:+73818068 MsG0280010716.01.T01:CDS
TTCACAGTGCTGTTGATGAA+AGG 0.601830 2:+73818054 MsG0280010716.01.T01:CDS
AACTAGAGTATTGGCCACAT+AGG 0.602477 2:+73817337 MsG0280010716.01.T01:CDS
AGGATATGAATGCTAGATTG+GGG 0.603878 2:+73817796 MsG0280010716.01.T01:CDS
GCCAACACAACAAAAGTACT+CGG 0.607256 2:+73817861 MsG0280010716.01.T01:CDS
GAGATTCATGCTGCAACAGG+AGG 0.607317 2:+73817372 MsG0280010716.01.T01:CDS
TCTTGGAAACTAATCCTATG+TGG 0.617406 2:-73817351 None:intergenic
GCATGAGCATCACGGACAAG+TGG 0.618801 2:+73817839 MsG0280010716.01.T01:CDS
TAAGGGAGGATACACTATTG+AGG 0.620099 2:+73818085 MsG0280010716.01.T01:CDS
CAGATTGTGAAAATGTTACA+GGG 0.624874 2:+73818179 MsG0280010716.01.T01:CDS
GCTCTCATGCATGAGCATCA+CGG 0.630066 2:+73817831 MsG0280010716.01.T01:CDS
AAGCAATGTTCTACTTGACA+AGG 0.630884 2:+73817776 MsG0280010716.01.T01:CDS
GAAAGGTTGAAGGCTAAGGG+AGG 0.631418 2:+73818071 MsG0280010716.01.T01:CDS
ATGCTGATAAGAGGCACATG+TGG 0.642832 2:-73817012 None:intergenic
GAATAAAATCAGCTGCAATG+TGG 0.687578 2:+73818256 MsG0280010716.01.T01:CDS
TCATTATTGGTCTAACACCA+GGG 0.690921 2:-73818154 None:intergenic
TTGGATTCTGTGCAGCCACG+GGG 0.701369 2:+73817076 MsG0280010716.01.T01:CDS
GGATATGAATGCTAGATTGG+GGG 0.706814 2:+73817797 MsG0280010716.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTAATACAAATTTTTCAAT+TGG + Chr2:73817138-73817157 MsG0280010716.01.T01:CDS 15.0%
! AAATATGGAGAAAGTTTACT+TGG + Chr2:73818231-73818250 MsG0280010716.01.T01:CDS 25.0%
! ACTGAAACATAGAAATTTAG+TGG + Chr2:73817540-73817559 MsG0280010716.01.T01:intron 25.0%
! AGAAGAAGAAATTGAAGATT+GGG + Chr2:73817314-73817333 MsG0280010716.01.T01:CDS 25.0%
! ATTATGGATGAAACTTATGT+TGG + Chr2:73817057-73817076 MsG0280010716.01.T01:CDS 25.0%
! ATTCTCTATAAGAGAAACAA+AGG + Chr2:73817291-73817310 MsG0280010716.01.T01:CDS 25.0%
! CTGAAACATAGAAATTTAGT+GGG + Chr2:73817541-73817560 MsG0280010716.01.T01:intron 25.0%
! GTTTATCACTTCATGAATAA+TGG + Chr2:73817607-73817626 MsG0280010716.01.T01:intron 25.0%
!! AGAGAACAAAAGTGTATATA+AGG + Chr2:73817424-73817443 MsG0280010716.01.T01:intron 25.0%
!! ATAATGGAAGTTTAGACAAA+TGG + Chr2:73817623-73817642 MsG0280010716.01.T01:intron 25.0%
!! GAGAACAAAAGTGTATATAA+GGG + Chr2:73817425-73817444 MsG0280010716.01.T01:intron 25.0%
!!! AGTTTTGAAAAATGTAGACA+CGG + Chr2:73817696-73817715 MsG0280010716.01.T01:intron 25.0%
AAGGATATGAATGCTAGATT+GGG + Chr2:73817795-73817814 MsG0280010716.01.T01:CDS 30.0%
ACAGATTGTGAAAATGTTAC+AGG + Chr2:73818178-73818197 MsG0280010716.01.T01:CDS 30.0%
ATAGTGTTAACATTCTTGCT+TGG + Chr2:73817109-73817128 MsG0280010716.01.T01:CDS 30.0%
CAGATTGTGAAAATGTTACA+GGG + Chr2:73818179-73818198 MsG0280010716.01.T01:CDS 30.0%
CGAATCTGATGAAGAAAATA+TGG + Chr2:73818216-73818235 MsG0280010716.01.T01:CDS 30.0%
GAGAAGAAGAAATTGAAGAT+TGG + Chr2:73817313-73817332 MsG0280010716.01.T01:CDS 30.0%
TATGTTCTTCAATAGGTCTT+CGG - Chr2:73817986-73818005 None:intergenic 30.0%
TTAAGATTCATGCTGATAAG+AGG - Chr2:73817024-73817043 None:intergenic 30.0%
TTCACAATCTGTCTCATTAT+TGG - Chr2:73818170-73818189 None:intergenic 30.0%
! TGTATATAAGGGATTTTGCA+AGG + Chr2:73817436-73817455 MsG0280010716.01.T01:intron 30.0%
!! ATGTGTTTGGTTTGGAATAT+TGG + Chr2:73817941-73817960 MsG0280010716.01.T01:intron 30.0%
!! TAACCTTTCTGGAGTTATTA+TGG + Chr2:73817041-73817060 MsG0280010716.01.T01:CDS 30.0%
!!! GTTTTGAAAAATGTAGACAC+GGG + Chr2:73817697-73817716 MsG0280010716.01.T01:intron 30.0%
AAGAAGGAAAGATGCTAACA+TGG + Chr2:73817659-73817678 MsG0280010716.01.T01:intron 35.0%
AAGATTGGGAACTAGAGTAT+TGG + Chr2:73817328-73817347 MsG0280010716.01.T01:CDS 35.0%
AAGCAATGTTCTACTTGACA+AGG + Chr2:73817776-73817795 MsG0280010716.01.T01:CDS 35.0%
ACTATCTGATGTGTTTGGTT+TGG + Chr2:73817933-73817952 MsG0280010716.01.T01:intron 35.0%
AGAAATTTAGTGGGATTCAG+AGG + Chr2:73817550-73817569 MsG0280010716.01.T01:intron 35.0%
AGAAGGAAAGATGCTAACAT+GGG + Chr2:73817660-73817679 MsG0280010716.01.T01:intron 35.0%
AGCATGAATCTTAACCTTTC+TGG + Chr2:73817030-73817049 MsG0280010716.01.T01:CDS 35.0%
AGGATATGAATGCTAGATTG+GGG + Chr2:73817796-73817815 MsG0280010716.01.T01:CDS 35.0%
ATAAGCCAGGACTAATTGAA+TGG + Chr2:73818003-73818022 MsG0280010716.01.T01:intron 35.0%
CAAGGATATGAATGCTAGAT+TGG + Chr2:73817794-73817813 MsG0280010716.01.T01:CDS 35.0%
CATCAACTATCTGATGTGTT+TGG + Chr2:73817928-73817947 MsG0280010716.01.T01:intron 35.0%
CATCCATAATAACTCCAGAA+AGG - Chr2:73817047-73817066 None:intergenic 35.0%
CGAAAAACCATCCTTTATGA+GGG - Chr2:73817200-73817219 None:intergenic 35.0%
GAATAAAATCAGCTGCAATG+TGG + Chr2:73818256-73818275 MsG0280010716.01.T01:CDS 35.0%
GCTATAGATGTAGGAATAAC+TGG + Chr2:73817228-73817247 MsG0280010716.01.T01:CDS 35.0%
GGAATTCTATACTTGCATGA+GGG + Chr2:73817718-73817737 MsG0280010716.01.T01:intron 35.0%
TAAGCCAGGACTAATTGAAT+GGG + Chr2:73818004-73818023 MsG0280010716.01.T01:intron 35.0%
TCTTGGAAACTAATCCTATG+TGG - Chr2:73817354-73817373 None:intergenic 35.0%
TTCTATGTTTCAGTCTTCCT+AGG - Chr2:73817534-73817553 None:intergenic 35.0%
! CCTCATAAAGGATGGTTTTT+CGG + Chr2:73817198-73817217 MsG0280010716.01.T01:CDS 35.0%
! GAGGATTCTCTGAAGAAAAT+GGG + Chr2:73817391-73817410 MsG0280010716.01.T01:CDS 35.0%
! TCATTATTGGTCTAACACCA+GGG - Chr2:73818157-73818176 None:intergenic 35.0%
!! ACAAAAGTACTCGGAACATT+AGG + Chr2:73817870-73817889 MsG0280010716.01.T01:CDS 35.0%
!! TTGGTTTGGAATATTGGTGT+TGG + Chr2:73817947-73817966 MsG0280010716.01.T01:intron 35.0%
AGAATCCCTCAAGAAAGAGA+AGG + Chr2:73817478-73817497 MsG0280010716.01.T01:intron 40.0%
AGCTGAGAGATTGCTTCATT+TGG + Chr2:73818109-73818128 MsG0280010716.01.T01:CDS 40.0%
ATTTAGTGGGATTCAGAGGT+TGG + Chr2:73817554-73817573 MsG0280010716.01.T01:intron 40.0%
CATTTGTCCCTCATAAAGGA+TGG + Chr2:73817190-73817209 MsG0280010716.01.T01:CDS 40.0%
CCGAAAAACCATCCTTTATG+AGG - Chr2:73817201-73817220 None:intergenic 40.0%
CCTATTGAAGAACATAAGCC+AGG + Chr2:73817990-73818009 MsG0280010716.01.T01:intron 40.0%
CCTGGCTTATGTTCTTCAAT+AGG - Chr2:73817993-73818012 None:intergenic 40.0%
CCTTCATTTGTCCCTCATAA+AGG + Chr2:73817186-73817205 MsG0280010716.01.T01:CDS 40.0%
CCTTTATGAGGGACAAATGA+AGG - Chr2:73817189-73817208 None:intergenic 40.0%
GAATCCCTCAAGAAAGAGAA+GGG + Chr2:73817479-73817498 MsG0280010716.01.T01:intron 40.0%
GATGAAAGGTTGAAGGCTAA+GGG + Chr2:73818068-73818087 MsG0280010716.01.T01:CDS 40.0%
GCTGAGAGATTGCTTCATTT+GGG + Chr2:73818110-73818129 MsG0280010716.01.T01:CDS 40.0%
GGATATGAATGCTAGATTGG+GGG + Chr2:73817797-73817816 MsG0280010716.01.T01:CDS 40.0%
GGGAATTCTATACTTGCATG+AGG + Chr2:73817717-73817736 MsG0280010716.01.T01:intron 40.0%
TAAGGGAGGATACACTATTG+AGG + Chr2:73818085-73818104 MsG0280010716.01.T01:CDS 40.0%
TCATCCCTTCTCTTTCTTGA+GGG - Chr2:73817486-73817505 None:intergenic 40.0%
TCTATACTTGCATGAGGGTT+GGG + Chr2:73817723-73817742 MsG0280010716.01.T01:intron 40.0%
TGATGAAAGGTTGAAGGCTA+AGG + Chr2:73818067-73818086 MsG0280010716.01.T01:CDS 40.0%
TGGATCTTTGAGTGTGAAGA+AGG + Chr2:73817643-73817662 MsG0280010716.01.T01:intron 40.0%
TTCTATACTTGCATGAGGGT+TGG + Chr2:73817722-73817741 MsG0280010716.01.T01:intron 40.0%
! AAGTTGATCAAGCGCCTTTA+GGG - Chr2:73818036-73818055 None:intergenic 40.0%
! AATGCTAGATTGGGGGATTT+TGG + Chr2:73817804-73817823 MsG0280010716.01.T01:CDS 40.0%
! AGAAGGGATGAGAGAGTTTT+TGG + Chr2:73817495-73817514 MsG0280010716.01.T01:intron 40.0%
! CTCATTATTGGTCTAACACC+AGG - Chr2:73818158-73818177 None:intergenic 40.0%
! GGAGGATTCTCTGAAGAAAA+TGG + Chr2:73817390-73817409 MsG0280010716.01.T01:CDS 40.0%
! GGGAGTTAAGGTTTTGCATA+GGG + Chr2:73817743-73817762 MsG0280010716.01.T01:intron 40.0%
! TAGATTGGGGGATTTTGGAT+TGG + Chr2:73817809-73817828 MsG0280010716.01.T01:CDS 40.0%
! TGCTGTTGATGAAAGGTTGA+AGG + Chr2:73818061-73818080 MsG0280010716.01.T01:CDS 40.0%
! TGGGAGTTAAGGTTTTGCAT+AGG + Chr2:73817742-73817761 MsG0280010716.01.T01:intron 40.0%
! TTCACAGTGCTGTTGATGAA+AGG + Chr2:73818054-73818073 MsG0280010716.01.T01:CDS 40.0%
!! AACTAGAGTATTGGCCACAT+AGG + Chr2:73817337-73817356 MsG0280010716.01.T01:CDS 40.0%
!! GCCAACACAACAAAAGTACT+CGG + Chr2:73817861-73817880 MsG0280010716.01.T01:CDS 40.0%
!! TCCGAGTACTTTTGTTGTGT+TGG - Chr2:73817865-73817884 None:intergenic 40.0%
!! TGAAGAAAATGGGTTGCTGT+AGG + Chr2:73817401-73817420 MsG0280010716.01.T01:intron 40.0%
!! TTGGTGTTGGAAGTGATTTG+CGG + Chr2:73817960-73817979 MsG0280010716.01.T01:intron 40.0%
AGATGCTAACATGGGAAGAG+AGG + Chr2:73817668-73817687 MsG0280010716.01.T01:intron 45.0%
CAAGAGATTCATGCTGCAAC+AGG + Chr2:73817369-73817388 MsG0280010716.01.T01:CDS 45.0%
CTCATCCCTTCTCTTTCTTG+AGG - Chr2:73817487-73817506 None:intergenic 45.0%
CTGTGTTCAAATTCAGACCC+TGG + Chr2:73818137-73818156 MsG0280010716.01.T01:CDS 45.0%
CTGTTGCAGCATGAATCTCT+TGG - Chr2:73817371-73817390 None:intergenic 45.0%
CTTCCTGTTCGAATCACTTC+TGG - Chr2:73817906-73817925 None:intergenic 45.0%
GGAGCAAAGGCTATAGATGT+AGG + Chr2:73817219-73817238 MsG0280010716.01.T01:CDS 45.0%
TCCACCCATTCAATTAGTCC+TGG - Chr2:73818011-73818030 None:intergenic 45.0%
! ACTATCTCTTTTCTTCCCCG+TGG - Chr2:73817094-73817113 None:intergenic 45.0%
! ATGCTGATAAGAGGCACATG+TGG - Chr2:73817015-73817034 None:intergenic 45.0%
! GAAGTTGATCAAGCGCCTTT+AGG - Chr2:73818037-73818056 None:intergenic 45.0%
! GGTTGGTGCAAGGAAGAAAA+GGG + Chr2:73817571-73817590 MsG0280010716.01.T01:intron 45.0%
!! AGGATGGTTTTTCGGAGCAA+AGG + Chr2:73817206-73817225 MsG0280010716.01.T01:CDS 45.0%
!! AGGTTGGTGCAAGGAAGAAA+AGG + Chr2:73817570-73817589 MsG0280010716.01.T01:intron 45.0%
!! TTTGCAAGGTGTTGAAGTCG+CGG + Chr2:73817450-73817469 MsG0280010716.01.T01:intron 45.0%
!!! GATGAGAGAGTTTTTGGCTG+AGG + Chr2:73817501-73817520 MsG0280010716.01.T01:intron 45.0%
GAAAGGTTGAAGGCTAAGGG+AGG + Chr2:73818071-73818090 MsG0280010716.01.T01:CDS 50.0%
GAGATTCATGCTGCAACAGG+AGG + Chr2:73817372-73817391 MsG0280010716.01.T01:CDS 50.0%
GCCAGGACTAATTGAATGGG+TGG + Chr2:73818007-73818026 MsG0280010716.01.T01:intron 50.0%
GCTCCAGAAGTGATTCGAAC+AGG + Chr2:73817900-73817919 MsG0280010716.01.T01:intron 50.0%
GCTCTCATGCATGAGCATCA+CGG + Chr2:73817831-73817850 MsG0280010716.01.T01:CDS 50.0%
TGAATGGGTGGAGTCCCTAA+AGG + Chr2:73818019-73818038 MsG0280010716.01.T01:intron 50.0%
TGCATGAGGGTTGGGAGTTA+AGG + Chr2:73817731-73817750 MsG0280010716.01.T01:intron 50.0%
TGTTGGATTCTGTGCAGCCA+CGG + Chr2:73817074-73817093 MsG0280010716.01.T01:CDS 50.0%
TTGGCTGAGGTTTCAAGCCT+AGG + Chr2:73817514-73817533 MsG0280010716.01.T01:intron 50.0%
GCATGAGCATCACGGACAAG+TGG + Chr2:73817839-73817858 MsG0280010716.01.T01:CDS 55.0%
GTTGGATTCTGTGCAGCCAC+GGG + Chr2:73817075-73817094 MsG0280010716.01.T01:CDS 55.0%
TTGGATTCTGTGCAGCCACG+GGG + Chr2:73817076-73817095 MsG0280010716.01.T01:CDS 55.0%
!! GGGATTCAGAGGTTGGTGCA+AGG + Chr2:73817561-73817580 MsG0280010716.01.T01:intron 55.0%
! TGGCTCGGGCAGGACGAAAG+AGG + Chr2:73816989-73817008 MsG0280010716.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 73816988 73818283 73816988 ID=MsG0280010716.01;Name=MsG0280010716.01
Chr2 mRNA 73816988 73818283 73816988 ID=MsG0280010716.01.T01;Parent=MsG0280010716.01;Name=MsG0280010716.01.T01;_AED=0.40;_eAED=0.40;_QI=0|0|0|1|1|1|3|0|270
Chr2 exon 73816988 73817412 73816988 ID=MsG0280010716.01.T01:exon:7379;Parent=MsG0280010716.01.T01
Chr2 exon 73817764 73817908 73817764 ID=MsG0280010716.01.T01:exon:7380;Parent=MsG0280010716.01.T01
Chr2 exon 73818041 73818283 73818041 ID=MsG0280010716.01.T01:exon:7381;Parent=MsG0280010716.01.T01
Chr2 CDS 73816988 73817412 73816988 ID=MsG0280010716.01.T01:cds;Parent=MsG0280010716.01.T01
Chr2 CDS 73817764 73817908 73817764 ID=MsG0280010716.01.T01:cds;Parent=MsG0280010716.01.T01
Chr2 CDS 73818041 73818283 73818041 ID=MsG0280010716.01.T01:cds;Parent=MsG0280010716.01.T01
Gene Sequence

>MsG0280010716.01.T01

ATGGCTCGGGCAGGACGAAAGAGGCCACATGTGCCTCTTATCAGCATGAATCTTAACCTTTCTGGAGTTATTATGGATGAAACTTATGTTGGATTCTGTGCAGCCACGGGGAAGAAAAGAGATAGTGTTAACATTCTTGCTTGGAGCTTTAGTAATACAAATTTTTCAATTGGTGATGCTTTAGTAACACACAACTTGCCTTCATTTGTCCCTCATAAAGGATGGTTTTTCGGAGCAAAGGCTATAGATGTAGGAATAACTGGTGTTGTCTCTGTCTTAATCATTAGTTGTGCAGTGTTATTTATTCTCTATAAGAGAAACAAAGGAGAAGAAGAAATTGAAGATTGGGAACTAGAGTATTGGCCACATAGGATTAGTTTCCAAGAGATTCATGCTGCAACAGGAGGATTCTCTGAAGAAAATGGGGATATCAAAGCAAGCAATGTTCTACTTGACAAGGATATGAATGCTAGATTGGGGGATTTTGGATTGGCTCTCATGCATGAGCATCACGGACAAGTGGCCAACACAACAAAAGTACTCGGAACATTAGGATACATTGCTCCAGAAGCGCTTGATCAACTTCACAGTGCTGTTGATGAAAGGTTGAAGGCTAAGGGAGGATACACTATTGAGGAAGCTGAGAGATTGCTTCATTTGGGTTTGCTGTGTTCAAATTCAGACCCTGGTGTTAGACCAATAATGAGACAGATTGTGAAAATGTTACAGGGAGAAATAGAAGCATCGAATCTGATGAAGAAAATATGGAGAAAGTTTACTTGGAAGAATAAAATCAGCTGCAATGTGGTCTAG
Protein sequence

>MsG0280010716.01.T01

MARAGRKRPHVPLISMNLNLSGVIMDETYVGFCAATGKKRDSVNILAWSFSNTNFSIGDALVTHNLPSFVPHKGWFFGAKAIDVGITGVVSVLIISCAVLFILYKRNKGEEEIEDWELEYWPHRISFQEIHAATGGFSEENGDIKASNVLLDKDMNARLGDFGLALMHEHHGQVANTTKVLGTLGYIAPEALDQLHSAVDERLKAKGGYTIEEAERLLHLGLLCSNSDPGVRPIMRQIVKMLQGEIEASNLMKKIWRKFTWKNKISCNVV*