AlfalfaGEDB | MsG0280010865.01

M. sativa cultivar ZhongmuNo.1 / MsG0280010865.01

KEGG: -
GO: GO:0003677 GO:0046983
PFAM: PF00319

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010865.01.T01	XP_003597147.1	91.469	211	17	1	1	210	18	228	2.27E-140	401

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010865.01.T01	Q9FKK2	53.801	171	71	4	1	163	16	186	2.62E-50	168

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010865.01.T01	G7IU48	91.469	211	17	1	1	210	18	228	1.08e-140	401

TFs/TRs:

Gene ID	Type	Classification
MsG0280010865.01.T01	TF	MADS-M-type

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type
MsG0280010865.01	MsG0380013711.01	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010865.01.T01	MTR_2g093190	91.469	211	17	1	1	210	18	228	2.75e-144	401
MsG0280010865.01.T01	MTR_1g108510	90.521	211	19	1	1	210	18	228	3.03e-143	399
MsG0280010865.01.T01	MTR_3g030770	90.047	211	20	1	1	210	18	228	1.35e-141	394
MsG0280010865.01.T01	MTR_1g108580	88.626	211	23	1	1	210	18	228	3.66e-140	391
MsG0280010865.01.T01	MTR_1g105920	75.490	204	39	3	1	195	18	219	2.98e-104	300
MsG0280010865.01.T01	MTR_8g043650	73.364	214	46	3	1	205	18	229	4.67e-104	300
MsG0280010865.01.T01	MTR_1g105910	71.101	218	44	4	1	209	18	225	2.18e-102	295
MsG0280010865.01.T01	MTR_2g030740	72.549	204	45	3	1	195	18	219	1.49e-100	291
MsG0280010865.01.T01	MTR_1g012570	72.059	204	46	3	1	195	18	219	1.24e-99	288
MsG0280010865.01.T01	MTR_3g052920	71.078	204	48	3	1	195	18	219	1.57e-96	281
MsG0280010865.01.T01	MTR_1g105905	66.514	218	54	4	1	209	1	208	1.97e-94	275
MsG0280010865.01.T01	MTR_0121s0080	66.055	218	55	4	1	209	18	225	2.06e-93	273
MsG0280010865.01.T01	MTR_7g062350	66.509	212	52	4	7	209	36	237	1.52e-89	263
MsG0280010865.01.T01	MTR_1g075600	62.385	218	63	4	1	209	18	225	1.05e-87	258
MsG0280010865.01.T01	MTR_5g045560	61.927	218	64	4	1	209	18	225	1.74e-86	255
MsG0280010865.01.T01	MTR_1g077360	59.633	218	69	4	1	209	18	225	2.22e-85	253
MsG0280010865.01.T01	MTR_5g053390	60.092	218	68	4	1	209	18	225	2.21e-83	247
MsG0280010865.01.T01	MTR_2g085280	58.716	218	71	4	1	209	18	225	2.92e-81	242
MsG0280010865.01.T01	MTR_2g085250	59.524	210	74	3	1	201	18	225	4.78e-81	241
MsG0280010865.01.T01	MTR_5g055100	58.716	218	71	4	1	209	18	225	8.24e-81	241
MsG0280010865.01.T01	MTR_1g106070	73.333	165	35	2	1	156	18	182	1.34e-80	238
MsG0280010865.01.T01	MTR_3g052870	65.816	196	53	4	1	195	18	200	5.76e-80	238
MsG0280010865.01.T01	MTR_0121s0100	83.478	115	18	1	1	114	18	132	3.22e-62	190
MsG0280010865.01.T01	MTR_3g080940	53.374	163	73	2	4	165	21	181	4.71e-54	172
MsG0280010865.01.T01	MTR_1g075570	57.303	178	53	3	1	169	1	164	5.82e-53	167
MsG0280010865.01.T01	MTR_3g030780	68.696	115	35	1	1	114	18	132	2.82e-49	157
MsG0280010865.01.T01	MTR_3g067910	62.745	102	37	1	4	104	2	103	2.77e-38	128
MsG0280010865.01.T01	MTR_8g086290	41.722	151	79	2	1	148	21	165	1.97e-34	120
MsG0280010865.01.T01	MTR_7g028448	42.105	152	77	3	5	156	25	165	1.57e-33	118
MsG0280010865.01.T01	MTR_4g036915	42.105	152	77	3	5	156	25	165	1.57e-33	118
MsG0280010865.01.T01	MTR_1g108500	62.500	96	16	1	5	100	110	185	1.49e-30	115
MsG0280010865.01.T01	MTR_2g105290	37.162	148	90	1	1	148	21	165	4.17e-30	109
MsG0280010865.01.T01	MTR_4g127140	36.943	157	80	4	5	148	25	175	3.21e-26	100
MsG0280010865.01.T01	MTR_3g067875	76.786	56	13	0	1	56	1	56	1.62e-24	92.0
MsG0280010865.01.T01	MTR_1g063160	57.812	64	27	0	8	71	18	81	3.50e-21	86.7
MsG0280010865.01.T01	MTR_3g067915	48.936	94	47	1	16	108	3	96	5.35e-21	84.0
MsG0280010865.01.T01	MTR_4g131030	42.000	100	42	2	8	91	18	117	2.80e-20	85.1
MsG0280010865.01.T01	MTR_1g047550	66.038	53	18	0	8	60	18	70	6.31e-20	83.6
MsG0280010865.01.T01	MTR_8g079502	66.038	53	18	0	8	60	18	70	6.96e-20	83.6
MsG0280010865.01.T01	MTR_1g054265	57.143	63	27	0	8	70	18	80	8.79e-20	82.8
MsG0280010865.01.T01	MTR_3g067870	63.934	61	22	0	1	61	85	145	1.91e-19	81.6
MsG0280010865.01.T01	MTR_8g051580	66.038	53	18	0	8	60	18	70	3.17e-19	81.6
MsG0280010865.01.T01	MTR_8g046350	40.708	113	60	3	8	117	18	126	3.65e-19	80.9
MsG0280010865.01.T01	MTR_4g094632	41.667	96	55	1	1	96	11	105	7.08e-19	80.1
MsG0280010865.01.T01	MTR_4g094638	40.206	97	56	1	1	95	11	107	1.87e-16	74.3
MsG0280010865.01.T01	MTR_8g033220	28.440	218	119	8	1	198	11	211	7.65e-16	73.6
MsG0280010865.01.T01	MTR_8g033220	28.440	218	119	8	1	198	11	211	8.49e-16	73.6
MsG0280010865.01.T01	MTR_4g102530	52.542	59	28	0	1	59	11	69	1.42e-15	72.4
MsG0280010865.01.T01	MTR_5g066180	30.769	156	84	4	1	153	11	145	2.10e-15	72.4
MsG0280010865.01.T01	MTR_8g022970	33.835	133	86	2	10	141	36	167	3.17e-15	71.2
MsG0280010865.01.T01	MTR_4g093970	43.820	89	41	2	1	81	37	124	5.59e-15	71.6
MsG0280010865.01.T01	MTR_8g033270	48.571	70	34	1	1	68	11	80	1.56e-14	70.5
MsG0280010865.01.T01	MTR_5g032520	35.043	117	65	3	1	111	11	122	1.98e-14	69.7
MsG0280010865.01.T01	MTR_3g102570	41.304	92	52	2	1	91	11	101	3.31e-14	70.5
MsG0280010865.01.T01	MTR_6g464720	35.714	112	69	2	1	109	11	122	3.67e-14	69.3
MsG0280010865.01.T01	MTR_7g075870	32.895	152	85	5	1	142	11	155	4.07e-14	68.6
MsG0280010865.01.T01	MTR_1g101970	52.632	57	27	0	3	59	13	69	4.22e-14	68.2
MsG0280010865.01.T01	MTR_2g009890	49.153	59	30	0	1	59	11	69	8.33e-14	68.9
MsG0280010865.01.T01	MTR_3g005530	47.458	59	31	0	1	59	11	69	9.38e-14	67.8
MsG0280010865.01.T01	MTR_5g032150	27.273	209	127	6	1	187	11	216	1.03e-13	67.8
MsG0280010865.01.T01	MTR_0003s0590	49.153	59	30	0	1	59	11	69	1.24e-13	68.2
MsG0280010865.01.T01	MTR_5g031000	49.153	59	30	0	1	59	11	69	1.50e-13	67.8
MsG0280010865.01.T01	MTR_5g031000	49.153	59	30	0	1	59	11	69	1.54e-13	67.4
MsG0280010865.01.T01	MTR_4g109830	48.333	60	30	1	1	59	11	70	1.69e-13	67.4
MsG0280010865.01.T01	MTR_3g452380	35.455	110	70	1	1	109	26	135	1.79e-13	67.4
MsG0280010865.01.T01	MTR_1g053070	45.763	59	32	0	1	59	11	69	5.18e-13	66.2
MsG0280010865.01.T01	MTR_7g075870	32.680	153	85	6	1	142	11	156	5.99e-13	65.5
MsG0280010865.01.T01	MTR_3g437790	31.690	142	81	4	9	141	30	164	7.14e-13	64.7
MsG0280010865.01.T01	MTR_4g036050	29.469	207	115	8	1	191	11	202	8.44e-13	65.1
MsG0280010865.01.T01	MTR_3g109930	32.374	139	79	4	10	141	20	150	1.41e-12	63.9
MsG0280010865.01.T01	MTR_2g017865	36.559	93	59	0	1	93	26	118	1.44e-12	65.1
MsG0280010865.01.T01	MTR_8g087860	33.028	109	72	1	1	108	27	135	2.54e-12	64.3
MsG0280010865.01.T01	MTR_4g036050	29.353	201	109	9	1	191	11	188	3.27e-12	63.2
MsG0280010865.01.T01	MTR_1g041615	41.748	103	54	3	3	105	17	113	6.38e-12	61.2
MsG0280010865.01.T01	MTR_8g066260	46.667	60	31	1	1	59	11	70	6.59e-12	63.2
MsG0280010865.01.T01	MTR_2g461710	55.319	47	21	0	1	47	11	57	9.96e-12	58.5
MsG0280010865.01.T01	MTR_7g016630	41.333	75	38	2	1	69	11	85	1.22e-11	62.4
MsG0280010865.01.T01	MTR_6g015975	46.667	60	31	1	1	59	11	70	2.04e-11	62.0
MsG0280010865.01.T01	MTR_4g084740	43.478	69	38	1	1	68	11	79	2.41e-11	62.4
MsG0280010865.01.T01	MTR_5g046790	38.667	75	40	2	1	69	11	85	5.19e-11	60.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010865.01.T01	AT5G60440	53.801	171	71	4	1	163	16	186	2.67e-51	168
MsG0280010865.01.T01	AT2G24840	48.077	156	71	3	1	150	72	223	3.57e-40	138
MsG0280010865.01.T01	AT1G01530	44.379	169	87	4	1	165	16	181	3.36e-36	127
MsG0280010865.01.T01	AT1G65360	39.881	168	95	4	1	163	16	182	2.86e-32	117
MsG0280010865.01.T01	AT4G36590	40.764	157	84	3	1	149	16	171	4.86e-32	117
MsG0280010865.01.T01	AT2G34440	38.931	131	79	1	8	138	18	147	1.58e-23	92.8
MsG0280010865.01.T01	AT3G66656	42.718	103	54	1	8	105	18	120	1.77e-20	85.1
MsG0280010865.01.T01	AT1G72350	31.875	160	70	5	4	156	55	182	3.36e-18	80.1
MsG0280010865.01.T01	AT2G45660	34.194	155	83	5	1	144	11	157	4.84e-18	78.2
MsG0280010865.01.T01	AT2G45660	33.987	153	82	5	1	142	11	155	4.90e-17	76.6
MsG0280010865.01.T01	AT3G04100	28.736	174	111	5	1	165	23	192	4.38e-16	73.9
MsG0280010865.01.T01	AT4G24540	34.058	138	75	3	1	138	11	132	1.85e-15	72.4
MsG0280010865.01.T01	AT4G09960	38.053	113	63	3	1	109	11	120	6.19e-15	70.9
MsG0280010865.01.T01	AT4G09960	31.818	176	94	6	1	168	12	169	7.77e-15	70.9
MsG0280010865.01.T01	AT4G09960	38.053	113	63	3	1	109	21	130	8.38e-15	71.2
MsG0280010865.01.T01	AT4G09960	38.053	113	63	3	1	109	11	120	8.48e-15	70.9
MsG0280010865.01.T01	AT2G22540	52.542	59	28	0	1	59	11	69	8.55e-15	71.2
MsG0280010865.01.T01	AT2G22540	52.542	59	28	0	1	59	11	69	8.55e-15	71.2
MsG0280010865.01.T01	AT4G09960	31.818	176	94	6	1	168	37	194	8.67e-15	71.2
MsG0280010865.01.T01	AT4G09960	38.053	113	63	3	1	109	106	215	1.37e-14	71.6
MsG0280010865.01.T01	AT4G22950	50.847	59	29	0	1	59	11	69	1.72e-14	68.9
MsG0280010865.01.T01	AT4G37940	53.846	52	24	0	8	59	18	69	2.10e-14	69.7
MsG0280010865.01.T01	AT4G37940	53.846	52	24	0	8	59	18	69	2.75e-14	69.3
MsG0280010865.01.T01	AT3G57230	45.763	59	32	0	1	59	11	69	3.04e-14	67.8
MsG0280010865.01.T01	AT5G51870	50.847	59	29	0	1	59	11	69	3.43e-14	68.2
MsG0280010865.01.T01	AT4G37940	47.458	59	31	0	1	59	11	69	3.91e-14	68.2
MsG0280010865.01.T01	AT5G51870	50.847	59	29	0	1	59	11	69	4.10e-14	68.6
MsG0280010865.01.T01	AT2G45650	50.847	59	29	0	1	59	11	69	4.35e-14	69.3
MsG0280010865.01.T01	AT5G13790	50.847	59	29	0	1	59	11	69	5.64e-14	69.3
MsG0280010865.01.T01	AT5G13790	50.847	59	29	0	1	59	11	69	5.64e-14	69.3
MsG0280010865.01.T01	AT3G57230	32.624	141	77	5	1	130	11	144	5.79e-14	68.9
MsG0280010865.01.T01	AT3G57230	32.624	141	77	5	1	130	11	144	5.79e-14	68.9
MsG0280010865.01.T01	AT5G51870	50.847	59	29	0	1	59	11	69	5.81e-14	68.6
MsG0280010865.01.T01	AT4G22950	50.847	59	29	0	1	59	11	69	6.24e-14	68.6
MsG0280010865.01.T01	AT4G22950	50.847	59	29	0	1	59	11	69	6.24e-14	68.6
MsG0280010865.01.T01	AT5G51870	50.847	59	29	0	1	59	21	79	7.57e-14	68.2
MsG0280010865.01.T01	AT5G51870	50.847	59	29	0	1	59	34	92	8.63e-14	67.4
MsG0280010865.01.T01	AT3G57390	51.923	52	25	0	8	59	18	69	9.49e-14	68.2
MsG0280010865.01.T01	AT1G29962	28.667	150	100	2	9	151	25	174	9.87e-14	67.0
MsG0280010865.01.T01	AT4G18960	37.778	90	47	1	1	90	27	107	1.87e-13	67.4
MsG0280010865.01.T01	AT3G57390	51.923	52	25	0	8	59	18	69	1.99e-13	67.4
MsG0280010865.01.T01	AT3G30260	48.333	60	30	1	1	59	11	70	2.20e-13	67.4
MsG0280010865.01.T01	AT5G62165	45.763	59	32	0	1	59	11	69	3.31e-13	65.1
MsG0280010865.01.T01	AT5G62165	45.763	59	32	0	1	59	11	69	3.31e-13	65.1
MsG0280010865.01.T01	AT5G62165	45.763	59	32	0	1	59	11	69	3.31e-13	65.1
MsG0280010865.01.T01	AT5G51860	49.153	59	30	0	1	59	11	69	4.71e-13	65.9
MsG0280010865.01.T01	AT5G62165	45.763	59	32	0	1	59	11	69	5.07e-13	63.5
MsG0280010865.01.T01	AT1G28460	27.891	147	102	3	9	151	25	171	5.30e-13	65.1
MsG0280010865.01.T01	AT5G51860	49.153	59	30	0	1	59	11	69	5.85e-13	65.5
MsG0280010865.01.T01	AT5G62165	45.763	59	32	0	1	59	11	69	5.85e-13	64.3
MsG0280010865.01.T01	AT5G62165	45.763	59	32	0	1	59	11	69	5.85e-13	64.3
MsG0280010865.01.T01	AT5G62165	45.763	59	32	0	1	59	11	69	5.85e-13	64.3
MsG0280010865.01.T01	AT5G62165	45.763	59	32	0	1	59	11	69	5.85e-13	64.3
MsG0280010865.01.T01	AT5G62165	45.763	59	32	0	1	59	11	69	5.85e-13	64.3
MsG0280010865.01.T01	AT5G10140	51.667	60	28	1	1	59	11	70	6.02e-13	64.7
MsG0280010865.01.T01	AT5G62165	45.763	59	32	0	1	59	11	69	8.30e-13	65.1
MsG0280010865.01.T01	AT5G62165	45.763	59	32	0	1	59	11	69	8.30e-13	65.1
MsG0280010865.01.T01	AT5G62165	45.763	59	32	0	1	59	11	69	8.30e-13	65.1
MsG0280010865.01.T01	AT3G61120	40.506	79	45	1	1	77	11	89	8.54e-13	65.5
MsG0280010865.01.T01	AT5G10140	51.667	60	28	1	1	59	11	70	8.75e-13	64.7
MsG0280010865.01.T01	AT5G62165	45.763	59	32	0	1	59	11	69	9.19e-13	64.7
MsG0280010865.01.T01	AT5G62165	45.763	59	32	0	1	59	11	69	9.19e-13	64.7
MsG0280010865.01.T01	AT5G10140	51.667	60	28	1	1	59	11	70	1.04e-12	64.3
MsG0280010865.01.T01	AT2G22540	59.574	47	19	0	1	47	11	57	1.05e-12	65.1
MsG0280010865.01.T01	AT5G10140	51.667	60	28	1	1	59	11	70	1.07e-12	64.7
MsG0280010865.01.T01	AT4G11880	48.333	60	30	1	1	59	11	70	1.26e-12	63.9
MsG0280010865.01.T01	AT4G11880	48.333	60	30	1	1	59	11	70	1.26e-12	63.9
MsG0280010865.01.T01	AT2G14210	45.000	60	32	1	1	59	11	70	1.30e-12	65.1
MsG0280010865.01.T01	AT2G14210	45.000	60	32	1	1	59	11	70	1.52e-12	64.7
MsG0280010865.01.T01	AT1G17310	46.774	62	31	1	5	66	61	120	1.52e-12	64.7
MsG0280010865.01.T01	AT4G11880	48.333	60	30	1	1	59	11	70	1.98e-12	64.3
MsG0280010865.01.T01	AT4G11880	48.333	60	30	1	1	59	11	70	1.98e-12	64.3
MsG0280010865.01.T01	AT1G17310	49.153	59	28	1	8	66	75	131	2.02e-12	64.3
MsG0280010865.01.T01	AT2G42830	45.763	59	32	0	1	59	26	84	2.44e-12	64.3
MsG0280010865.01.T01	AT5G60910	48.333	60	30	1	1	59	11	70	2.53e-12	64.3
MsG0280010865.01.T01	AT2G42830	45.763	59	32	0	1	59	26	84	2.57e-12	64.3
MsG0280010865.01.T01	AT1G69120	48.333	60	30	1	1	59	11	70	3.02e-12	63.9
MsG0280010865.01.T01	AT3G58780	45.763	59	32	0	1	59	26	84	3.86e-12	63.9
MsG0280010865.01.T01	AT1G71692	45.902	61	32	1	1	60	11	71	4.55e-12	63.2
MsG0280010865.01.T01	AT3G58780	45.763	59	32	0	1	59	32	90	4.66e-12	63.5
MsG0280010865.01.T01	AT1G26310	46.667	60	31	1	1	59	11	70	4.85e-12	63.5
MsG0280010865.01.T01	AT1G69120	48.333	60	30	1	1	59	11	70	7.20e-12	63.2
MsG0280010865.01.T01	AT3G58780	45.763	59	32	0	1	59	26	84	7.43e-12	63.5
MsG0280010865.01.T01	AT1G22130	34.862	109	68	3	1	107	11	118	8.55e-12	63.5
MsG0280010865.01.T01	AT1G77980	49.206	63	31	1	1	62	11	73	8.78e-12	63.5
MsG0280010865.01.T01	AT1G77950	49.153	59	29	1	5	62	15	73	1.50e-11	62.4
MsG0280010865.01.T01	AT1G77950	49.153	59	29	1	5	62	15	73	1.50e-11	62.4
MsG0280010865.01.T01	AT1G77950	49.153	59	29	1	5	62	15	73	1.50e-11	62.4
MsG0280010865.01.T01	AT1G77950	49.153	59	29	1	5	62	15	73	1.50e-11	62.4
MsG0280010865.01.T01	AT3G54340	31.452	124	70	5	1	110	11	133	2.24e-11	61.6
MsG0280010865.01.T01	AT5G49490	42.105	76	37	2	6	74	59	134	3.93e-11	61.2

Find 46 sgRNAs with CRISPR-Local

Find 58 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTGCAGCCTCATTTGTTTGA+TGG	0.293834	2:+76078091	MsG0280010865.01.T01:CDS
TGAATTGCATGGTGTCGTTT+TGG	0.296240	2:-76077715	None:intergenic
TCACCATGGCTTCAATAATA+TGG	0.324358	2:+76078126	MsG0280010865.01.T01:CDS
TGGTGGGCTTGTCCAGTTGA+TGG	0.339908	2:+76077869	MsG0280010865.01.T01:CDS
ATTTGAGTTTGTTGAGGATT+TGG	0.343942	2:-76078031	None:intergenic
TGAATTATTCAAGAAGGCTT+TGG	0.346261	2:+76077910	MsG0280010865.01.T01:CDS
TCCAGTTGATGGGATGAATA+AGG	0.346534	2:+76077880	MsG0280010865.01.T01:CDS
TGGTCATCCCAATCTTGATA+TGG	0.365228	2:+76077661	MsG0280010865.01.T01:CDS
CTCATCACCAATCTTCTTCT+CGG	0.374331	2:-76077810	None:intergenic
TCCTTATTCATCCCATCAAC+TGG	0.386216	2:-76077881	None:intergenic
GTTTATGACCATATCAAGAT+TGG	0.391741	2:-76077669	None:intergenic
GCTTTGAGAAAGTCACTTGC+AGG	0.402119	2:-76077538	None:intergenic
AGTGAGCTTTGCACCCTTTG+TGG	0.441727	2:+76077587	MsG0280010865.01.T01:CDS
AGGAAACAGAGGCTAAGTTT+TGG	0.457517	2:+76077849	MsG0280010865.01.T01:CDS
GTTGAGGATTTGGCTGATGA+TGG	0.460369	2:-76078021	None:intergenic
GGTGGGCTTGTCCAGTTGAT+GGG	0.465063	2:+76077870	MsG0280010865.01.T01:CDS
CTGGATGCCGAGAAGAAGAT+TGG	0.471167	2:+76077803	MsG0280010865.01.T01:CDS
TTTATGACCATATCAAGATT+GGG	0.474817	2:-76077668	None:intergenic
TCAACTTGAATTATTCAAGA+AGG	0.483881	2:+76077904	MsG0280010865.01.T01:CDS
TGAGGCTGCAATTGCAACAT+AGG	0.486430	2:-76078079	None:intergenic
CTTTCTCAAAGCGTCGCAGC+GGG	0.500082	2:+76077549	MsG0280010865.01.T01:CDS
ATTATTCAAGAAGGCTTTGG+AGG	0.515397	2:+76077913	MsG0280010865.01.T01:CDS
ACAAAGGGTGCAAAGCTCAC+TGG	0.525840	2:-76077585	None:intergenic
AGCAGCATCTGCACCACAAA+GGG	0.530066	2:-76077600	None:intergenic
ACACCATATTATTGAAGCCA+TGG	0.549763	2:-76078129	None:intergenic
CTTGTTGTATTCTCACCTAG+TGG	0.572809	2:+76077623	MsG0280010865.01.T01:CDS
GAGGCTGCAATTGCAACATA+GGG	0.578323	2:-76078078	None:intergenic
ATCAAGATTGGGATGACCAA+AGG	0.580409	2:-76077657	None:intergenic
ATCGATCCATCAAACAAATG+AGG	0.583681	2:-76078097	None:intergenic
GGAAACATTTGAGTTTGTTG+AGG	0.589185	2:-76078037	None:intergenic
TTGAGAAAGTCACTTGCAGG+TGG	0.593625	2:-76077535	None:intergenic
TGTATTCTCACCTAGTGGAA+AGG	0.594205	2:+76077628	MsG0280010865.01.T01:CDS
GAGCAGCATCTGCACCACAA+AGG	0.622747	2:-76077601	None:intergenic
AACTCAAATCAACAACACGC+TGG	0.622750	2:+76077784	MsG0280010865.01.T01:CDS
GTTCACGCACGTTGGCATTG+CGG	0.623421	2:-76077748	None:intergenic
AAGGAAAATACCTTTCCACT+AGG	0.624124	2:-76077638	None:intergenic
CAATTTGAGCAAGGAAACAG+AGG	0.635312	2:+76077838	MsG0280010865.01.T01:CDS
ATATTATTGAAGCCATGGTG+AGG	0.642989	2:-76078124	None:intergenic
ACTTTCTCAAAGCGTCGCAG+CGG	0.643826	2:+76077548	MsG0280010865.01.T01:CDS
CGACACCATGCAATTCATTG+AGG	0.645467	2:+76077721	MsG0280010865.01.T01:CDS
ATGATGGAGATAAATGTTCG+AGG	0.659519	2:-76078005	None:intergenic
TGAGCTGAGCAATTTGAGCA+AGG	0.660156	2:+76077829	MsG0280010865.01.T01:CDS
GTGAGCCTCAATGAATTGCA+TGG	0.661389	2:-76077726	None:intergenic
AGCATTGAGTTCACGCACGT+TGG	0.672189	2:-76077756	None:intergenic
CTGGGACGAGAGAAAGATAG+CGG	0.698788	2:-76077691	None:intergenic
GGATCGATGATGCCTCACCA+TGG	0.718921	2:+76078112	MsG0280010865.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	TCAACTTGAATTATTCAAGA+AGG	+	Chr2:76077904-76077923	MsG0280010865.01.T01:CDS	25.0%
!	TTTATGACCATATCAAGATT+GGG	-	Chr2:76077671-76077690	None:intergenic	25.0%
!!!	ATAGGGTTTTGAAAAATTTG+TGG	-	Chr2:76078064-76078083	None:intergenic	25.0%
	AACAAAAAATGGAAGAGTTC+GGG	-	Chr2:76077972-76077991	None:intergenic	30.0%
	CAACAAAAAATGGAAGAGTT+CGG	-	Chr2:76077973-76077992	None:intergenic	30.0%
	GTTTATGACCATATCAAGAT+TGG	-	Chr2:76077672-76077691	None:intergenic	30.0%
	TGAATTATTCAAGAAGGCTT+TGG	+	Chr2:76077910-76077929	MsG0280010865.01.T01:CDS	30.0%
!!	ATTTGAGTTTGTTGAGGATT+TGG	-	Chr2:76078034-76078053	None:intergenic	30.0%
	AAGGAAAATACCTTTCCACT+AGG	-	Chr2:76077641-76077660	None:intergenic	35.0%
	ACACCATATTATTGAAGCCA+TGG	-	Chr2:76078132-76078151	None:intergenic	35.0%
	ATATTATTGAAGCCATGGTG+AGG	-	Chr2:76078127-76078146	None:intergenic	35.0%
	ATCGATCCATCAAACAAATG+AGG	-	Chr2:76078100-76078119	None:intergenic	35.0%
	TCACCATGGCTTCAATAATA+TGG	+	Chr2:76078126-76078145	MsG0280010865.01.T01:CDS	35.0%
!	ATGATGGAGATAAATGTTCG+AGG	-	Chr2:76078008-76078027	None:intergenic	35.0%
!	ATTATTCAAGAAGGCTTTGG+AGG	+	Chr2:76077913-76077932	MsG0280010865.01.T01:CDS	35.0%
!!	GAAGCATTGCCAACAAAAAA+TGG	-	Chr2:76077983-76078002	None:intergenic	35.0%
!!	GGAAACATTTGAGTTTGTTG+AGG	-	Chr2:76078040-76078059	None:intergenic	35.0%
!!!	AGTGGAAAGGTATTTTCCTT+TGG	+	Chr2:76077641-76077660	MsG0280010865.01.T01:CDS	35.0%
!!!	CGAACTCTTCCATTTTTTGT+TGG	+	Chr2:76077971-76077990	MsG0280010865.01.T01:CDS	35.0%
!!!	GGGTTTTGAAAAATTTGTGG+TGG	-	Chr2:76078061-76078080	None:intergenic	35.0%
	AACTCAAATCAACAACACGC+TGG	+	Chr2:76077784-76077803	MsG0280010865.01.T01:CDS	40.0%
	ATCAAGATTGGGATGACCAA+AGG	-	Chr2:76077660-76077679	None:intergenic	40.0%
	CAATTTGAGCAAGGAAACAG+AGG	+	Chr2:76077838-76077857	MsG0280010865.01.T01:CDS	40.0%
	CTCATCACCAATCTTCTTCT+CGG	-	Chr2:76077813-76077832	None:intergenic	40.0%
	TCCTTATTCATCCCATCAAC+TGG	-	Chr2:76077884-76077903	None:intergenic	40.0%
	TGGTCATCCCAATCTTGATA+TGG	+	Chr2:76077661-76077680	MsG0280010865.01.T01:CDS	40.0%
	TGTATTCTCACCTAGTGGAA+AGG	+	Chr2:76077628-76077647	MsG0280010865.01.T01:CDS	40.0%
	TTGCAGCCTCATTTGTTTGA+TGG	+	Chr2:76078091-76078110	MsG0280010865.01.T01:CDS	40.0%
!	AGGAAACAGAGGCTAAGTTT+TGG	+	Chr2:76077849-76077868	MsG0280010865.01.T01:CDS	40.0%
!	CTTGTTGTATTCTCACCTAG+TGG	+	Chr2:76077623-76077642	MsG0280010865.01.T01:CDS	40.0%
!!	AAACAGAGGCTAAGTTTTGG+TGG	+	Chr2:76077852-76077871	MsG0280010865.01.T01:CDS	40.0%
!!	AACAGAGGCTAAGTTTTGGT+GGG	+	Chr2:76077853-76077872	MsG0280010865.01.T01:CDS	40.0%
!!	TCCAGTTGATGGGATGAATA+AGG	+	Chr2:76077880-76077899	MsG0280010865.01.T01:CDS	40.0%
!!!	GAATTGCATGGTGTCGTTTT+GGG	-	Chr2:76077717-76077736	None:intergenic	40.0%
!!!	TGAATTGCATGGTGTCGTTT+TGG	-	Chr2:76077718-76077737	None:intergenic	40.0%
	CGACACCATGCAATTCATTG+AGG	+	Chr2:76077721-76077740	MsG0280010865.01.T01:CDS	45.0%
	GAGGCTGCAATTGCAACATA+GGG	-	Chr2:76078081-76078100	None:intergenic	45.0%
	GTGAGCCTCAATGAATTGCA+TGG	-	Chr2:76077729-76077748	None:intergenic	45.0%
	GTTGAGGATTTGGCTGATGA+TGG	-	Chr2:76078024-76078043	None:intergenic	45.0%
	TGAGCTGAGCAATTTGAGCA+AGG	+	Chr2:76077829-76077848	MsG0280010865.01.T01:CDS	45.0%
	TGAGGCTGCAATTGCAACAT+AGG	-	Chr2:76078082-76078101	None:intergenic	45.0%
	TTGAGAAAGTCACTTGCAGG+TGG	-	Chr2:76077538-76077557	None:intergenic	45.0%
!!	GCTTTGAGAAAGTCACTTGC+AGG	-	Chr2:76077541-76077560	None:intergenic	45.0%
	AGCAGCATCTGCACCACAAA+GGG	-	Chr2:76077603-76077622	None:intergenic	50.0%
	AGTGAGCTTTGCACCCTTTG+TGG	+	Chr2:76077587-76077606	MsG0280010865.01.T01:CDS	50.0%
	CTGGATGCCGAGAAGAAGAT+TGG	+	Chr2:76077803-76077822	MsG0280010865.01.T01:CDS	50.0%
	CTGGGACGAGAGAAAGATAG+CGG	-	Chr2:76077694-76077713	None:intergenic	50.0%
!	ACAAAGGGTGCAAAGCTCAC+TGG	-	Chr2:76077588-76077607	None:intergenic	50.0%
!	AGCATTGAGTTCACGCACGT+TGG	-	Chr2:76077759-76077778	None:intergenic	50.0%
!!	ACTTTCTCAAAGCGTCGCAG+CGG	+	Chr2:76077548-76077567	MsG0280010865.01.T01:CDS	50.0%
	GAGCAGCATCTGCACCACAA+AGG	-	Chr2:76077604-76077623	None:intergenic	55.0%
	GGATCGATGATGCCTCACCA+TGG	+	Chr2:76078112-76078131	MsG0280010865.01.T01:CDS	55.0%
	GTTCACGCACGTTGGCATTG+CGG	-	Chr2:76077751-76077770	None:intergenic	55.0%
!	GGTGGGCTTGTCCAGTTGAT+GGG	+	Chr2:76077870-76077889	MsG0280010865.01.T01:CDS	55.0%
!!	CTTTCTCAAAGCGTCGCAGC+GGG	+	Chr2:76077549-76077568	MsG0280010865.01.T01:CDS	55.0%
!!	TGGTGGGCTTGTCCAGTTGA+TGG	+	Chr2:76077869-76077888	MsG0280010865.01.T01:CDS	55.0%
!!!	GCATGGTGTCGTTTTGGGCT+GGG	-	Chr2:76077712-76077731	None:intergenic	55.0%
!!!	TGCATGGTGTCGTTTTGGGC+TGG	-	Chr2:76077713-76077732	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	76077521	76078153	76077521	ID=MsG0280010865.01;Name=MsG0280010865.01
Chr2	mRNA	76077521	76078153	76077521	ID=MsG0280010865.01.T01;Parent=MsG0280010865.01;Name=MsG0280010865.01.T01;_AED=0.47;_eAED=0.47;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|210
Chr2	exon	76077521	76078153	76077521	ID=MsG0280010865.01.T01:exon:11227;Parent=MsG0280010865.01.T01
Chr2	CDS	76077521	76078153	76077521	ID=MsG0280010865.01.T01:cds;Parent=MsG0280010865.01.T01

Gene Sequence

>MsG0280010865.01.T01

ATGAGCAACGAGAGCCACCTGCAAGTGACTTTCTCAAAGCGTCGCAGCGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTTTGTGGTGCAGATGCTGCTCTTGTTGTATTCTCACCTAGTGGAAAGGTATTTTCCTTTGGTCATCCCAATCTTGATATGGTCATAAACCGCTATCTTTCTCTCGTCCCAGCCCAAAACGACACCATGCAATTCATTGAGGCTCACCGCAATGCCAACGTGCGTGAACTCAATGCTCAACTAACTCAAATCAACAACACGCTGGATGCCGAGAAGAAGATTGGTGATGAGCTGAGCAATTTGAGCAAGGAAACAGAGGCTAAGTTTTGGTGGGCTTGTCCAGTTGATGGGATGAATAAGGATCAACTTGAATTATTCAAGAAGGCTTTGGAGGAGCTTAAGAAACTTGTAATTCAGCATGCTGCTACCCGAACTCTTCCATTTTTTGTTGGCAATGCTTCATCCTCGAACATTTATCTCCATCATCAGCCAAATCCTCAACAAACTCAAATGTTTCCACCACAAATTTTTCAAAACCCTATGTTGCAATTGCAGCCTCATTTGTTTGATGGATCGATGATGCCTCACCATGGCTTCAATAATATGGTGTAA

Protein sequence

>MsG0280010865.01.T01

MSNESHLQVTFSKRRSGLFKKASELCTLCGADAALVVFSPSGKVFSFGHPNLDMVINRYLSLVPAQNDTMQFIEAHRNANVRELNAQLTQINNTLDAEKKIGDELSNLSKETEAKFWWACPVDGMNKDQLELFKKALEELKKLVIQHAATRTLPFFVGNASSSNIYLHHQPNPQQTQMFPPQIFQNPMLQLQPHLFDGSMMPHHGFNNMV*