Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011012.01.T01 | XP_003597341.1 | 93.182 | 88 | 6 | 0 | 1 | 88 | 1 | 88 | 3.21E-53 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011012.01.T01 | Q9FFZ6 | 46.429 | 84 | 45 | 0 | 5 | 88 | 32 | 115 | 4.18E-20 | 81.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011012.01.T01 | G7IHN0 | 93.182 | 88 | 6 | 0 | 1 | 88 | 1 | 88 | 1.54e-53 | 171 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0480021250.01 | MsG0280011012.01 | PPI |
| MsG0480021251.01 | MsG0280011012.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011012.01.T01 | MTR_2g096560 | 93.182 | 88 | 6 | 0 | 1 | 88 | 1 | 88 | 3.89e-57 | 171 |
| MsG0280011012.01.T01 | MTR_7g099940 | 51.250 | 80 | 39 | 0 | 8 | 87 | 36 | 115 | 2.90e-22 | 84.3 |
| MsG0280011012.01.T01 | MTR_6g477870 | 45.679 | 81 | 44 | 0 | 7 | 87 | 95 | 175 | 2.05e-21 | 83.2 |
| MsG0280011012.01.T01 | MTR_7g105260 | 46.914 | 81 | 43 | 0 | 5 | 85 | 30 | 110 | 2.48e-21 | 81.6 |
| MsG0280011012.01.T01 | MTR_3g029580 | 38.824 | 85 | 52 | 0 | 3 | 87 | 28 | 112 | 1.02e-19 | 77.4 |
| MsG0280011012.01.T01 | MTR_1g092860 | 45.455 | 77 | 42 | 0 | 8 | 84 | 193 | 269 | 2.79e-17 | 74.3 |
| MsG0280011012.01.T01 | MTR_4g063560 | 44.156 | 77 | 43 | 0 | 7 | 83 | 33 | 109 | 7.79e-16 | 67.0 |
| MsG0280011012.01.T01 | MTR_3g025880 | 43.373 | 83 | 45 | 1 | 7 | 87 | 44 | 126 | 1.90e-15 | 70.1 |
| MsG0280011012.01.T01 | MTR_4g070140 | 41.026 | 78 | 46 | 0 | 8 | 85 | 9 | 86 | 2.30e-15 | 67.8 |
| MsG0280011012.01.T01 | MTR_4g070080 | 38.462 | 78 | 48 | 0 | 8 | 85 | 7 | 84 | 3.62e-15 | 65.9 |
| MsG0280011012.01.T01 | MTR_3g029580 | 40.000 | 70 | 42 | 0 | 3 | 72 | 28 | 97 | 5.37e-15 | 65.5 |
| MsG0280011012.01.T01 | MTR_4g117350 | 40.506 | 79 | 47 | 0 | 7 | 85 | 71 | 149 | 7.26e-15 | 65.9 |
| MsG0280011012.01.T01 | MTR_4g070080 | 38.961 | 77 | 47 | 0 | 8 | 84 | 7 | 83 | 9.92e-15 | 65.5 |
| MsG0280011012.01.T01 | MTR_4g109540 | 38.750 | 80 | 49 | 0 | 7 | 86 | 42 | 121 | 4.40e-14 | 65.5 |
| MsG0280011012.01.T01 | MTR_6g477870 | 42.424 | 66 | 38 | 0 | 7 | 72 | 95 | 160 | 5.91e-14 | 63.5 |
| MsG0280011012.01.T01 | MTR_4g070190 | 37.179 | 78 | 49 | 0 | 8 | 85 | 9 | 86 | 1.11e-13 | 62.8 |
| MsG0280011012.01.T01 | MTR_4g081520 | 38.750 | 80 | 49 | 0 | 7 | 86 | 51 | 130 | 1.54e-13 | 62.0 |
| MsG0280011012.01.T01 | MTR_7g013730 | 36.842 | 76 | 48 | 0 | 8 | 83 | 41 | 116 | 6.09e-13 | 62.0 |
| MsG0280011012.01.T01 | MTR_3g080130 | 36.585 | 82 | 50 | 1 | 7 | 86 | 36 | 117 | 7.77e-13 | 60.1 |
| MsG0280011012.01.T01 | MTR_3g084040 | 36.250 | 80 | 50 | 1 | 7 | 86 | 36 | 114 | 1.19e-12 | 59.7 |
| MsG0280011012.01.T01 | MTR_4g109540 | 37.179 | 78 | 49 | 0 | 9 | 86 | 52 | 129 | 7.49e-12 | 59.3 |
| MsG0280011012.01.T01 | MTR_2g026180 | 38.095 | 84 | 43 | 2 | 8 | 87 | 37 | 115 | 8.55e-12 | 59.7 |
| MsG0280011012.01.T01 | MTR_2g026180 | 38.095 | 84 | 43 | 2 | 8 | 87 | 107 | 185 | 9.80e-12 | 59.3 |
| MsG0280011012.01.T01 | MTR_7g094660 | 35.000 | 80 | 52 | 0 | 7 | 86 | 329 | 408 | 1.19e-11 | 59.3 |
| MsG0280011012.01.T01 | MTR_7g013740 | 35.000 | 80 | 52 | 0 | 7 | 86 | 40 | 119 | 1.21e-11 | 57.0 |
| MsG0280011012.01.T01 | MTR_4g104470 | 38.272 | 81 | 50 | 0 | 8 | 88 | 123 | 203 | 2.41e-11 | 58.2 |
| MsG0280011012.01.T01 | MTR_4g104470 | 37.037 | 81 | 51 | 0 | 6 | 86 | 215 | 295 | 5.34e-11 | 57.0 |
| MsG0280011012.01.T01 | MTR_8g107310 | 41.026 | 78 | 46 | 0 | 11 | 88 | 215 | 292 | 2.46e-11 | 58.2 |
| MsG0280011012.01.T01 | MTR_3g095230 | 38.202 | 89 | 49 | 3 | 5 | 88 | 315 | 402 | 2.64e-11 | 58.2 |
| MsG0280011012.01.T01 | MTR_3g095230 | 38.202 | 89 | 49 | 3 | 5 | 88 | 315 | 402 | 2.66e-11 | 58.2 |
| MsG0280011012.01.T01 | MTR_3g462330 | 41.026 | 78 | 46 | 0 | 6 | 83 | 44 | 121 | 3.23e-11 | 57.8 |
| MsG0280011012.01.T01 | MTR_2g090655 | 38.667 | 75 | 46 | 0 | 7 | 81 | 34 | 108 | 3.31e-11 | 57.4 |
| MsG0280011012.01.T01 | MTR_3g075500 | 35.443 | 79 | 51 | 0 | 8 | 86 | 207 | 285 | 3.84e-11 | 57.4 |
| MsG0280011012.01.T01 | MTR_8g074790 | 38.272 | 81 | 50 | 0 | 6 | 86 | 61 | 141 | 5.23e-11 | 57.0 |
| MsG0280011012.01.T01 | MTR_3g055990 | 35.000 | 80 | 50 | 1 | 8 | 87 | 7 | 84 | 9.15e-11 | 56.6 |
| MsG0280011012.01.T01 | MTR_3g055990 | 35.000 | 80 | 50 | 1 | 8 | 87 | 7 | 84 | 9.60e-11 | 56.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011012.01.T01 | AT3G46020 | 65.476 | 84 | 29 | 0 | 1 | 84 | 1 | 84 | 5.56e-34 | 112 |
| MsG0280011012.01.T01 | AT5G59860 | 64.384 | 73 | 21 | 1 | 12 | 84 | 76 | 143 | 7.02e-25 | 91.3 |
| MsG0280011012.01.T01 | AT5G06210 | 46.429 | 84 | 45 | 0 | 5 | 88 | 32 | 115 | 4.26e-21 | 81.3 |
| MsG0280011012.01.T01 | AT1G73530 | 48.718 | 78 | 40 | 0 | 7 | 84 | 77 | 154 | 3.09e-20 | 80.1 |
| MsG0280011012.01.T01 | AT2G37510 | 47.297 | 74 | 39 | 0 | 8 | 81 | 35 | 108 | 4.83e-18 | 73.6 |
| MsG0280011012.01.T01 | AT3G20930 | 43.038 | 79 | 45 | 0 | 8 | 86 | 283 | 361 | 8.57e-17 | 73.6 |
| MsG0280011012.01.T01 | AT2G27330 | 39.130 | 92 | 51 | 1 | 2 | 88 | 16 | 107 | 1.58e-16 | 68.9 |
| MsG0280011012.01.T01 | AT3G23830 | 39.286 | 84 | 51 | 0 | 5 | 88 | 33 | 116 | 1.40e-15 | 67.0 |
| MsG0280011012.01.T01 | AT3G23830 | 39.286 | 84 | 51 | 0 | 5 | 88 | 33 | 116 | 1.40e-15 | 67.0 |
| MsG0280011012.01.T01 | AT4G39260 | 36.709 | 79 | 50 | 0 | 8 | 86 | 7 | 85 | 4.07e-15 | 64.7 |
| MsG0280011012.01.T01 | AT5G54580 | 38.272 | 81 | 50 | 0 | 7 | 87 | 56 | 136 | 1.30e-14 | 65.1 |
| MsG0280011012.01.T01 | AT3G20930 | 40.476 | 84 | 45 | 1 | 8 | 86 | 283 | 366 | 1.42e-14 | 67.4 |
| MsG0280011012.01.T01 | AT4G39260 | 37.662 | 77 | 48 | 0 | 8 | 84 | 7 | 83 | 2.56e-14 | 63.5 |
| MsG0280011012.01.T01 | AT2G37220 | 44.872 | 78 | 43 | 0 | 7 | 84 | 204 | 281 | 3.12e-14 | 65.9 |
| MsG0280011012.01.T01 | AT1G60650 | 38.750 | 80 | 49 | 0 | 7 | 86 | 12 | 91 | 3.32e-14 | 65.9 |
| MsG0280011012.01.T01 | AT1G60650 | 38.750 | 80 | 49 | 0 | 7 | 86 | 12 | 91 | 3.32e-14 | 65.9 |
| MsG0280011012.01.T01 | AT2G21660 | 37.662 | 77 | 48 | 0 | 8 | 84 | 9 | 85 | 3.98e-14 | 63.9 |
| MsG0280011012.01.T01 | AT4G13860 | 38.961 | 77 | 47 | 0 | 5 | 81 | 1 | 77 | 4.45e-14 | 62.0 |
| MsG0280011012.01.T01 | AT2G21660 | 37.662 | 77 | 48 | 0 | 8 | 84 | 9 | 85 | 5.42e-14 | 63.9 |
| MsG0280011012.01.T01 | AT4G39260 | 37.662 | 77 | 48 | 0 | 8 | 84 | 7 | 83 | 6.12e-14 | 63.5 |
| MsG0280011012.01.T01 | AT4G13850 | 37.500 | 80 | 50 | 0 | 7 | 86 | 35 | 114 | 1.19e-13 | 62.0 |
| MsG0280011012.01.T01 | AT4G13850 | 37.500 | 80 | 50 | 0 | 7 | 86 | 35 | 114 | 1.97e-13 | 61.6 |
| MsG0280011012.01.T01 | AT4G13850 | 37.500 | 80 | 50 | 0 | 7 | 86 | 35 | 114 | 2.35e-13 | 61.6 |
| MsG0280011012.01.T01 | AT4G13850 | 37.500 | 80 | 50 | 0 | 7 | 86 | 35 | 114 | 2.59e-13 | 61.6 |
| MsG0280011012.01.T01 | AT1G07350 | 36.842 | 76 | 48 | 0 | 6 | 81 | 44 | 119 | 7.83e-13 | 59.7 |
| MsG0280011012.01.T01 | AT1G07350 | 36.842 | 76 | 48 | 0 | 6 | 81 | 44 | 119 | 7.83e-13 | 59.7 |
| MsG0280011012.01.T01 | AT4G20030 | 34.568 | 81 | 53 | 0 | 5 | 85 | 38 | 118 | 9.08e-13 | 60.1 |
| MsG0280011012.01.T01 | AT3G26420 | 34.118 | 85 | 56 | 0 | 1 | 85 | 1 | 85 | 1.16e-12 | 61.2 |
| MsG0280011012.01.T01 | AT5G19030 | 35.526 | 76 | 49 | 0 | 10 | 85 | 80 | 155 | 1.55e-12 | 60.1 |
| MsG0280011012.01.T01 | AT5G61030 | 33.750 | 80 | 53 | 0 | 7 | 86 | 40 | 119 | 2.20e-12 | 61.2 |
| MsG0280011012.01.T01 | AT5G61030 | 33.750 | 80 | 53 | 0 | 7 | 86 | 40 | 119 | 2.20e-12 | 61.2 |
| MsG0280011012.01.T01 | AT1G07350 | 36.842 | 76 | 48 | 0 | 6 | 81 | 74 | 149 | 2.22e-12 | 59.3 |
| MsG0280011012.01.T01 | AT3G53460 | 43.038 | 79 | 45 | 0 | 8 | 86 | 279 | 357 | 2.25e-12 | 61.2 |
| MsG0280011012.01.T01 | AT3G53460 | 43.038 | 79 | 45 | 0 | 8 | 86 | 258 | 336 | 2.30e-12 | 61.2 |
| MsG0280011012.01.T01 | AT3G53460 | 43.038 | 79 | 45 | 0 | 8 | 86 | 258 | 336 | 2.30e-12 | 61.2 |
| MsG0280011012.01.T01 | AT3G53460 | 43.038 | 79 | 45 | 0 | 8 | 86 | 258 | 336 | 2.30e-12 | 61.2 |
| MsG0280011012.01.T01 | AT2G37510 | 35.354 | 99 | 39 | 1 | 8 | 81 | 35 | 133 | 2.37e-12 | 59.3 |
| MsG0280011012.01.T01 | AT1G07350 | 36.709 | 79 | 50 | 0 | 6 | 84 | 44 | 122 | 3.55e-12 | 59.7 |
| MsG0280011012.01.T01 | AT1G07350 | 36.709 | 79 | 50 | 0 | 6 | 84 | 74 | 152 | 5.05e-12 | 59.3 |
| MsG0280011012.01.T01 | AT5G59865 | 38.750 | 80 | 49 | 0 | 7 | 86 | 26 | 105 | 7.55e-12 | 57.0 |
| MsG0280011012.01.T01 | AT5G47620 | 35.714 | 84 | 45 | 2 | 8 | 87 | 47 | 125 | 8.22e-12 | 59.7 |
| MsG0280011012.01.T01 | AT5G47620 | 35.714 | 84 | 45 | 2 | 8 | 87 | 129 | 207 | 9.17e-12 | 59.7 |
| MsG0280011012.01.T01 | AT3G11400 | 42.308 | 78 | 45 | 0 | 11 | 88 | 244 | 321 | 9.38e-12 | 59.3 |
| MsG0280011012.01.T01 | AT5G47620 | 35.714 | 84 | 45 | 2 | 8 | 87 | 107 | 185 | 1.21e-11 | 59.3 |
| MsG0280011012.01.T01 | AT5G47620 | 35.714 | 84 | 45 | 2 | 8 | 87 | 107 | 185 | 1.21e-11 | 59.3 |
| MsG0280011012.01.T01 | AT5G47620 | 35.714 | 84 | 45 | 2 | 8 | 87 | 107 | 185 | 1.21e-11 | 59.3 |
| MsG0280011012.01.T01 | AT3G11400 | 42.308 | 78 | 45 | 0 | 11 | 88 | 217 | 294 | 1.41e-11 | 58.9 |
| MsG0280011012.01.T01 | AT5G64200 | 42.105 | 76 | 44 | 0 | 9 | 84 | 18 | 93 | 2.60e-11 | 58.2 |
| MsG0280011012.01.T01 | AT5G64200 | 42.105 | 76 | 44 | 0 | 9 | 84 | 18 | 93 | 2.60e-11 | 58.2 |
| MsG0280011012.01.T01 | AT5G06000 | 42.105 | 76 | 44 | 0 | 11 | 86 | 210 | 285 | 3.39e-11 | 57.8 |
| MsG0280011012.01.T01 | AT5G47320 | 38.750 | 80 | 49 | 0 | 5 | 84 | 29 | 108 | 4.05e-11 | 57.0 |
| MsG0280011012.01.T01 | AT3G10400 | 35.135 | 74 | 48 | 0 | 7 | 80 | 57 | 130 | 4.26e-11 | 57.4 |
| MsG0280011012.01.T01 | AT5G44200 | 38.462 | 78 | 48 | 0 | 4 | 81 | 31 | 108 | 4.79e-11 | 57.0 |
| MsG0280011012.01.T01 | AT5G44200 | 38.462 | 78 | 48 | 0 | 4 | 81 | 31 | 108 | 4.79e-11 | 57.0 |
| MsG0280011012.01.T01 | AT5G04280 | 32.558 | 86 | 58 | 0 | 1 | 86 | 1 | 86 | 5.27e-11 | 57.4 |
| MsG0280011012.01.T01 | AT4G26650 | 35.000 | 80 | 50 | 1 | 8 | 87 | 16 | 93 | 5.58e-11 | 57.4 |
| MsG0280011012.01.T01 | AT4G26650 | 35.000 | 80 | 50 | 1 | 8 | 87 | 13 | 90 | 5.68e-11 | 57.4 |
| MsG0280011012.01.T01 | AT4G35785 | 39.474 | 76 | 46 | 0 | 6 | 81 | 71 | 146 | 6.05e-11 | 56.2 |
| MsG0280011012.01.T01 | AT4G35785 | 39.474 | 76 | 46 | 0 | 6 | 81 | 71 | 146 | 6.05e-11 | 56.2 |
| MsG0280011012.01.T01 | AT3G50670 | 32.877 | 73 | 49 | 0 | 9 | 81 | 140 | 212 | 6.29e-11 | 57.0 |
| MsG0280011012.01.T01 | AT1G60000 | 39.241 | 79 | 48 | 0 | 8 | 86 | 178 | 256 | 6.33e-11 | 56.6 |
| MsG0280011012.01.T01 | AT1G18630 | 36.585 | 82 | 49 | 1 | 7 | 88 | 36 | 114 | 6.44e-11 | 55.5 |
| MsG0280011012.01.T01 | AT3G07810 | 36.905 | 84 | 44 | 2 | 8 | 87 | 109 | 187 | 7.31e-11 | 57.0 |
| MsG0280011012.01.T01 | AT3G07810 | 36.905 | 84 | 44 | 2 | 8 | 87 | 109 | 187 | 8.22e-11 | 57.0 |
| MsG0280011012.01.T01 | AT1G74230 | 38.961 | 77 | 46 | 1 | 7 | 83 | 34 | 109 | 9.81e-11 | 56.2 |
Find 29 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTCTTCAATAATCTAATT+TGG | 0.139109 | 2:+78335038 | MsG0280011012.01.T01:three_prime_UTR |
| GTTTGTCTACTTTCAGATTT+GGG | 0.171888 | 2:-78332814 | None:intergenic |
| ACAAATATGAGTATCCATTT+TGG | 0.186648 | 2:+78335072 | MsG0280011012.01.T01:three_prime_UTR |
| TTGCATCATAATTTCCAAAA+TGG | 0.240741 | 2:-78335086 | None:intergenic |
| TGTTTGTCTACTTTCAGATT+TGG | 0.241822 | 2:-78332815 | None:intergenic |
| ACTCGAAGGCCTAAAGGTTT+TGG | 0.275643 | 2:+78333144 | MsG0280011012.01.T01:CDS |
| ATTCTTCAATAATCTAATTT+GGG | 0.325349 | 2:+78335039 | MsG0280011012.01.T01:three_prime_UTR |
| AAAATTGATTGTAGTTGGTT+TGG | 0.400450 | 2:+78335119 | MsG0280011012.01.T01:three_prime_UTR |
| ATTGTAGTTGGTTTGGAAGT+TGG | 0.416175 | 2:+78335126 | MsG0280011012.01.T01:three_prime_UTR |
| GTGACAAAACCAAAACCTTT+AGG | 0.425328 | 2:-78333153 | None:intergenic |
| ATCTGAAATTGAAGCTGAAA+AGG | 0.434986 | 2:+78333182 | MsG0280011012.01.T01:CDS |
| GAGTCATTGTTCTCACCATT+CGG | 0.439129 | 2:+78332998 | MsG0280011012.01.T01:CDS |
| TACATGGTGCAGATAGTTGA+TGG | 0.459906 | 2:+78334860 | MsG0280011012.01.T01:intron |
| ACAAACATGTCTCAACGAAT+CGG | 0.462811 | 2:+78332831 | MsG0280011012.01.T01:exon |
| TGACTTGTTTGCACGAAGGC+AGG | 0.517416 | 2:-78332783 | None:intergenic |
| CAAACATGTCTCAACGAATC+GGG | 0.523595 | 2:+78332832 | MsG0280011012.01.T01:exon |
| CGTTGAACATGCAAAACCGA+AGG | 0.537967 | 2:+78334895 | MsG0280011012.01.T01:CDS |
| CTAGGAAAGCGTTGAATGGA+AGG | 0.544048 | 2:+78333205 | MsG0280011012.01.T01:CDS |
| TTTGTCTACTTTCAGATTTG+GGG | 0.548533 | 2:-78332813 | None:intergenic |
| AAGGCTAGGAAAGCGTTGAA+TGG | 0.548859 | 2:+78333201 | MsG0280011012.01.T01:CDS |
| TTGTCTACTTTCAGATTTGG+GGG | 0.570022 | 2:-78332812 | None:intergenic |
| AAATTGAAGCTGAAAAGGCT+AGG | 0.589928 | 2:+78333187 | MsG0280011012.01.T01:CDS |
| TGACATCTGAATAAGTTGAT+CGG | 0.596655 | 2:-78334958 | None:intergenic |
| GCTTTGACTTGTTTGCACGA+AGG | 0.659418 | 2:-78332787 | None:intergenic |
| TAGGAAAGCGTTGAATGGAA+GGG | 0.662886 | 2:+78333206 | MsG0280011012.01.T01:CDS |
| ATACACAGAAGATTTGAGCA+TGG | 0.666648 | 2:-78334933 | None:intergenic |
| CCTTCGGTAAGTACTCCGAA+TGG | 0.672529 | 2:-78333013 | None:intergenic |
| TGGTGCAGATAGTTGATGGA+AGG | 0.675003 | 2:+78334864 | MsG0280011012.01.T01:intron |
| CCATTCGGAGTACTTACCGA+AGG | 0.685995 | 2:+78333013 | MsG0280011012.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTTATTTTATATTGTTAT+AGG | + | Chr2:78333522-78333541 | MsG0280011012.01.T01:intron | 10.0% |
| !! | ATTCTTCAATAATCTAATTT+GGG | + | Chr2:78335039-78335058 | MsG0280011012.01.T01:three_prime_UTR | 15.0% |
| !! | TATTCTTCAATAATCTAATT+TGG | + | Chr2:78335038-78335057 | MsG0280011012.01.T01:three_prime_UTR | 15.0% |
| !! | TCAAATAAATAAATCGAAAT+AGG | - | Chr2:78333323-78333342 | None:intergenic | 15.0% |
| !! | CTATAAAAGTGAAGAAAAAA+AGG | - | Chr2:78335162-78335181 | None:intergenic | 20.0% |
| !!! | AAGTCTAAGATTCTTTTTAT+TGG | - | Chr2:78334566-78334585 | None:intergenic | 20.0% |
| !!! | TTTTTGAATACTGAAATCAA+TGG | + | Chr2:78334048-78334067 | MsG0280011012.01.T01:intron | 20.0% |
| ! | AAAATTGATTGTAGTTGGTT+TGG | + | Chr2:78335119-78335138 | MsG0280011012.01.T01:three_prime_UTR | 25.0% |
| ! | AACAAGCTGAAAATAACTTA+TGG | - | Chr2:78333414-78333433 | None:intergenic | 25.0% |
| ! | AGAACAACATATAGATGATA+TGG | - | Chr2:78334797-78334816 | None:intergenic | 25.0% |
| ! | AGATTACAGAACCAAAAAAA+AGG | - | Chr2:78333903-78333922 | None:intergenic | 25.0% |
| ! | ATAAGCTGTTTATCCAATTA+TGG | + | Chr2:78333842-78333861 | MsG0280011012.01.T01:intron | 25.0% |
| ! | ATTTATTTGAGCTTATCTAC+TGG | + | Chr2:78333333-78333352 | MsG0280011012.01.T01:intron | 25.0% |
| ! | CGCAATCAATTAATTAATCT+TGG | + | Chr2:78334530-78334549 | MsG0280011012.01.T01:intron | 25.0% |
| ! | GAAATGAAACATTGTTGAAA+AGG | - | Chr2:78332932-78332951 | None:intergenic | 25.0% |
| ! | GATAAAAATCATGTATCCTT+CGG | - | Chr2:78334914-78334933 | None:intergenic | 25.0% |
| ! | GATTATTAGTGTGTTATCAA+AGG | + | Chr2:78333969-78333988 | MsG0280011012.01.T01:intron | 25.0% |
| ! | TACTTATTAACTATGAAGCA+CGG | + | Chr2:78334295-78334314 | MsG0280011012.01.T01:intron | 25.0% |
| ! | TATATATATAAAGCTTGTCC+AGG | + | Chr2:78334266-78334285 | MsG0280011012.01.T01:intron | 25.0% |
| ! | TTCAATGTAATTACAAGTGT+CGG | + | Chr2:78334394-78334413 | MsG0280011012.01.T01:intron | 25.0% |
| ! | TTGCAAAAATTGATTGTAGT+TGG | + | Chr2:78335114-78335133 | MsG0280011012.01.T01:three_prime_UTR | 25.0% |
| ! | TTGCATCATAATTTCCAAAA+TGG | - | Chr2:78335089-78335108 | None:intergenic | 25.0% |
| ! | TTTCAAATTATTAGCTGTGT+CGG | - | Chr2:78334362-78334381 | None:intergenic | 25.0% |
| !! | ACAAATATGAGTATCCATTT+TGG | + | Chr2:78335072-78335091 | MsG0280011012.01.T01:three_prime_UTR | 25.0% |
| !! | TAAAGCATTAAAGCCATAAT+TGG | - | Chr2:78333858-78333877 | None:intergenic | 25.0% |
| !! | TTCATTTCATTTCATTTTCC+AGG | + | Chr2:78332944-78332963 | MsG0280011012.01.T01:intron | 25.0% |
| !!! | AGTTTAGCTTTCCTTTTTTT+TGG | + | Chr2:78333889-78333908 | MsG0280011012.01.T01:intron | 25.0% |
| !!! | CATTTTAACAAACACATTCA+TGG | - | Chr2:78333277-78333296 | None:intergenic | 25.0% |
| !!! | GTTATTTTCATAAGCTATCT+TGG | - | Chr2:78333719-78333738 | None:intergenic | 25.0% |
| !!! | TTCACTTTTATAGTACAAGA+TGG | + | Chr2:78335169-78335188 | MsG0280011012.01.T01:three_prime_UTR | 25.0% |
| AGTTAATAAGTAGCTAATCC+TGG | - | Chr2:78334287-78334306 | None:intergenic | 30.0% | |
| ATAAGCGTTTATCATGTAAG+TGG | - | Chr2:78333569-78333588 | None:intergenic | 30.0% | |
| CAAGTACAATTGAGATAGTA+AGG | - | Chr2:78334688-78334707 | None:intergenic | 30.0% | |
| CAATATAAGTTGTTGGATAG+AGG | + | Chr2:78334656-78334675 | MsG0280011012.01.T01:intron | 30.0% | |
| CTATCTTTGTCTAAGGAAAA+TGG | - | Chr2:78334755-78334774 | None:intergenic | 30.0% | |
| CTCATAGCTATATGTTGAAT+TGG | + | Chr2:78333242-78333261 | MsG0280011012.01.T01:intron | 30.0% | |
| CTCTATCCAACAACTTATAT+TGG | - | Chr2:78334658-78334677 | None:intergenic | 30.0% | |
| CTTACTATCTCAATTGTACT+TGG | + | Chr2:78334686-78334705 | MsG0280011012.01.T01:intron | 30.0% | |
| GAAACATTGTTGAAAAGGTT+GGG | - | Chr2:78332927-78332946 | None:intergenic | 30.0% | |
| GTTTGTCTACTTTCAGATTT+GGG | - | Chr2:78332817-78332836 | None:intergenic | 30.0% | |
| TAGCTTATGAAGGTAGTTTA+CGG | + | Chr2:78333383-78333402 | MsG0280011012.01.T01:intron | 30.0% | |
| TAGTTAGTTACAACTCTCTT+AGG | - | Chr2:78334509-78334528 | None:intergenic | 30.0% | |
| TGAAACATTGTTGAAAAGGT+TGG | - | Chr2:78332928-78332947 | None:intergenic | 30.0% | |
| TGCTAGTAGTTAAGCTAAAA+TGG | - | Chr2:78333609-78333628 | None:intergenic | 30.0% | |
| TGGAACAACTATGTAACTTA+AGG | - | Chr2:78334103-78334122 | None:intergenic | 30.0% | |
| TGTTAATAAGCTATGAAGCA+CGG | - | Chr2:78334472-78334491 | None:intergenic | 30.0% | |
| TGTTTGTCTACTTTCAGATT+TGG | - | Chr2:78332818-78332837 | None:intergenic | 30.0% | |
| TTATCGATCAAAAAACTCGA+AGG | + | Chr2:78333130-78333149 | MsG0280011012.01.T01:CDS | 30.0% | |
| TTCTAAATCACTAATCAGTC+AGG | - | Chr2:78333300-78333319 | None:intergenic | 30.0% | |
| TTTGTCTACTTTCAGATTTG+GGG | - | Chr2:78332816-78332835 | None:intergenic | 30.0% | |
| ! | AGATGTTTTCATAAGCTAAC+AGG | - | Chr2:78333449-78333468 | None:intergenic | 30.0% |
| ! | ATCTGAAATTGAAGCTGAAA+AGG | + | Chr2:78333182-78333201 | MsG0280011012.01.T01:CDS | 30.0% |
| ! | CATTTTCCTTAGACAAAGAT+AGG | + | Chr2:78334753-78334772 | MsG0280011012.01.T01:intron | 30.0% |
| ! | GAGCATATAACACTTTTCAT+AGG | + | Chr2:78333665-78333684 | MsG0280011012.01.T01:intron | 30.0% |
| !! | ATGGCTTTAATGCTTTACTT+CGG | + | Chr2:78333861-78333880 | MsG0280011012.01.T01:intron | 30.0% |
| !! | CTTACATAAGCTATTTCTAC+AGG | - | Chr2:78333784-78333803 | None:intergenic | 30.0% |
| !! | TGACATCTGAATAAGTTGAT+CGG | - | Chr2:78334961-78334980 | None:intergenic | 30.0% |
| !!! | GTCTGACTTTTGTTTTGTAA+CGG | + | Chr2:78333488-78333507 | MsG0280011012.01.T01:intron | 30.0% |
| AAATTGAAGCTGAAAAGGCT+AGG | + | Chr2:78333187-78333206 | MsG0280011012.01.T01:CDS | 35.0% | |
| ACAAACATGTCTCAACGAAT+CGG | + | Chr2:78332831-78332850 | MsG0280011012.01.T01:exon | 35.0% | |
| ACAGAGCATATTGATACTCA+TGG | + | Chr2:78334178-78334197 | MsG0280011012.01.T01:intron | 35.0% | |
| AGACATAGAGCATGAATAGT+TGG | + | Chr2:78334586-78334605 | MsG0280011012.01.T01:intron | 35.0% | |
| AGAGCATGAATAGTTGGATT+TGG | + | Chr2:78334592-78334611 | MsG0280011012.01.T01:intron | 35.0% | |
| AGTCAGCCAATATAAGTTGT+TGG | + | Chr2:78334649-78334668 | MsG0280011012.01.T01:intron | 35.0% | |
| ATACACAGAAGATTTGAGCA+TGG | - | Chr2:78334936-78334955 | None:intergenic | 35.0% | |
| ATCCATGGATTCTCAACAAT+TGG | - | Chr2:78334126-78334145 | None:intergenic | 35.0% | |
| CAGATTCCTATCTTTGTCTA+AGG | - | Chr2:78334762-78334781 | None:intergenic | 35.0% | |
| CTTATCATGATAAGCACATG+TGG | - | Chr2:78333837-78333818 | None:intergenic | 35.0% | |
| GAGCATGAATAGTTGGATTT+GGG | + | Chr2:78334593-78334612 | MsG0280011012.01.T01:intron | 35.0% | |
| GTAGTGTAAAACGATAATCC+TGG | - | Chr2:78332965-78332984 | None:intergenic | 35.0% | |
| GTGACAAAACCAAAACCTTT+AGG | - | Chr2:78333156-78333175 | None:intergenic | 35.0% | |
| GTGTTATCAAAGGAAGTTGT+GGG | + | Chr2:78333979-78333998 | MsG0280011012.01.T01:intron | 35.0% | |
| TCTCAATTGTACTTGGTCAA+CGG | + | Chr2:78334693-78334712 | MsG0280011012.01.T01:intron | 35.0% | |
| TGTGTTATCAAAGGAAGTTG+TGG | + | Chr2:78333978-78333997 | MsG0280011012.01.T01:intron | 35.0% | |
| TGTTATCAAAGGAAGTTGTG+GGG | + | Chr2:78333980-78333999 | MsG0280011012.01.T01:intron | 35.0% | |
| TTAACTATGAAGCACGGATA+CGG | + | Chr2:78334301-78334320 | MsG0280011012.01.T01:intron | 35.0% | |
| TTCACTTCTGCTACAATGAT+GGG | + | Chr2:78334011-78334030 | MsG0280011012.01.T01:intron | 35.0% | |
| TTGTCTACTTTCAGATTTGG+GGG | - | Chr2:78332815-78332834 | None:intergenic | 35.0% | |
| TTTCACTTCTGCTACAATGA+TGG | + | Chr2:78334010-78334029 | MsG0280011012.01.T01:intron | 35.0% | |
| !! | ATTGTAGTTGGTTTGGAAGT+TGG | + | Chr2:78335126-78335145 | MsG0280011012.01.T01:three_prime_UTR | 35.0% |
| AACTACCTTCATAAGCTAGC+CGG | - | Chr2:78333381-78333400 | None:intergenic | 40.0% | |
| AAGCATTTGTGGAACTGTTC+CGG | + | Chr2:78333359-78333378 | MsG0280011012.01.T01:intron | 40.0% | |
| AGCATTCTGTTGTTGGTCAA+TGG | + | Chr2:78333940-78333959 | MsG0280011012.01.T01:intron | 40.0% | |
| ATCAACTATCTGCACCATGT+AGG | - | Chr2:78334861-78334880 | None:intergenic | 40.0% | |
| CAAAAAACTCGAAGGCCTAA+AGG | + | Chr2:78333138-78333157 | MsG0280011012.01.T01:CDS | 40.0% | |
| CAAACATGTCTCAACGAATC+GGG | + | Chr2:78332832-78332851 | MsG0280011012.01.T01:exon | 40.0% | |
| CACCAATTGTTGAGAATCCA+TGG | + | Chr2:78334121-78334140 | MsG0280011012.01.T01:intron | 40.0% | |
| CATGGATTCTCAACAATTGG+TGG | - | Chr2:78334123-78334142 | None:intergenic | 40.0% | |
| GAGTCATTGTTCTCACCATT+CGG | + | Chr2:78332998-78333017 | MsG0280011012.01.T01:CDS | 40.0% | |
| GGGGGATATTACTGTATTGA+AGG | - | Chr2:78334840-78334859 | None:intergenic | 40.0% | |
| GTGAACAAGCATTCTGTTGT+TGG | + | Chr2:78333933-78333952 | MsG0280011012.01.T01:intron | 40.0% | |
| GTTACAACTCTCTTAGGAGT+TGG | - | Chr2:78334503-78334522 | None:intergenic | 40.0% | |
| GTTGAGAATCCATGGATCAA+GGG | + | Chr2:78334129-78334148 | MsG0280011012.01.T01:intron | 40.0% | |
| TACAGTAATATCCCCCTACA+TGG | + | Chr2:78334844-78334863 | MsG0280011012.01.T01:intron | 40.0% | |
| TACATGGTGCAGATAGTTGA+TGG | + | Chr2:78334860-78334879 | MsG0280011012.01.T01:intron | 40.0% | |
| TCAACTATCTGCACCATGTA+GGG | - | Chr2:78334860-78334879 | None:intergenic | 40.0% | |
| TCACTTCTGCTACAATGATG+GGG | + | Chr2:78334012-78334031 | MsG0280011012.01.T01:intron | 40.0% | |
| TCTACTGGCATAAGCATTTG+TGG | + | Chr2:78333348-78333367 | MsG0280011012.01.T01:intron | 40.0% | |
| TGTTGAGAATCCATGGATCA+AGG | + | Chr2:78334128-78334147 | MsG0280011012.01.T01:intron | 40.0% | |
| ! | AATGATGGGGTAGACTTGAT+GGG | + | Chr2:78334025-78334044 | MsG0280011012.01.T01:intron | 40.0% |
| ! | CTTATATTGGCTGACTGCAA+TGG | - | Chr2:78334645-78334664 | None:intergenic | 40.0% |
| !! | GTAATTACAAGTGTCGGTGT+CGG | + | Chr2:78334400-78334419 | MsG0280011012.01.T01:intron | 40.0% |
| !! | TAATTACAAGTGTCGGTGTC+GGG | + | Chr2:78334401-78334420 | MsG0280011012.01.T01:intron | 40.0% |
| !! | TAGGAAAGCGTTGAATGGAA+GGG | + | Chr2:78333206-78333225 | MsG0280011012.01.T01:CDS | 40.0% |
| AACTATCTGCACCATGTAGG+GGG | - | Chr2:78334858-78334877 | None:intergenic | 45.0% | |
| AATCAGAACCGACATAGCAG+TGG | - | Chr2:78333087-78333106 | None:intergenic | 45.0% | |
| ATCAGAACCGACATAGCAGT+GGG | - | Chr2:78333086-78333105 | None:intergenic | 45.0% | |
| CAACTATCTGCACCATGTAG+GGG | - | Chr2:78334859-78334878 | None:intergenic | 45.0% | |
| CACACATACACACACACCTT+CGG | - | Chr2:78333032-78333051 | None:intergenic | 45.0% | |
| CGTTGAACATGCAAAACCGA+AGG | + | Chr2:78334895-78334914 | MsG0280011012.01.T01:CDS | 45.0% | |
| GATCAAGGGAGGAAGATCAT+AGG | + | Chr2:78334143-78334162 | MsG0280011012.01.T01:intron | 45.0% | |
| GGTGAGAAGAGAAAGAAGAG+AGG | - | Chr2:78333062-78333081 | None:intergenic | 45.0% | |
| ! | ACTCGAAGGCCTAAAGGTTT+TGG | + | Chr2:78333144-78333163 | MsG0280011012.01.T01:CDS | 45.0% |
| ! | CAATGATGGGGTAGACTTGA+TGG | + | Chr2:78334024-78334043 | MsG0280011012.01.T01:intron | 45.0% |
| ! | CTCTCTTAGGAGTTGGTTAG+CGG | - | Chr2:78334496-78334515 | None:intergenic | 45.0% |
| !! | AAGGCTAGGAAAGCGTTGAA+TGG | + | Chr2:78333201-78333220 | MsG0280011012.01.T01:CDS | 45.0% |
| !! | CTAGGAAAGCGTTGAATGGA+AGG | + | Chr2:78333205-78333224 | MsG0280011012.01.T01:CDS | 45.0% |
| !! | GCTTTGACTTGTTTGCACGA+AGG | - | Chr2:78332790-78332809 | None:intergenic | 45.0% |
| !! | TGGTGCAGATAGTTGATGGA+AGG | + | Chr2:78334864-78334883 | MsG0280011012.01.T01:intron | 45.0% |
| ATGAAGCACGGATACGGACA+CGG | + | Chr2:78334307-78334326 | MsG0280011012.01.T01:intron | 50.0% | |
| CACGGACACCAAACACGATA+CGG | + | Chr2:78334325-78334344 | MsG0280011012.01.T01:intron | 50.0% | |
| CCTTCGGTAAGTACTCCGAA+TGG | - | Chr2:78333016-78333035 | None:intergenic | 50.0% | |
| GAGAATCCATGGATCAAGGG+AGG | + | Chr2:78334132-78334151 | MsG0280011012.01.T01:intron | 50.0% | |
| GATCTTCCTCCCTTGATCCA+TGG | - | Chr2:78334141-78334160 | None:intergenic | 50.0% | |
| GATTAGACGTGTCCCAGTGT+CGG | - | Chr2:78334439-78334458 | None:intergenic | 50.0% | |
| GGGAGGAAGATCATAGGCAT+AGG | + | Chr2:78334149-78334168 | MsG0280011012.01.T01:intron | 50.0% | |
| GTCAGTGTCCGTATCGTGTT+TGG | - | Chr2:78334336-78334355 | None:intergenic | 50.0% | |
| TATGAAGCACGGACACTCCT+CGG | - | Chr2:78334461-78334480 | None:intergenic | 50.0% | |
| TCAGAACCGACATAGCAGTG+GGG | - | Chr2:78333085-78333104 | None:intergenic | 50.0% | |
| ! | CCATTCGGAGTACTTACCGA+AGG | + | Chr2:78333013-78333032 | MsG0280011012.01.T01:CDS | 50.0% |
| !! | CTGTTCCGGCTAGCTTATGA+AGG | + | Chr2:78333373-78333392 | MsG0280011012.01.T01:intron | 50.0% |
| !! | TGACTTGTTTGCACGAAGGC+AGG | - | Chr2:78332786-78332805 | None:intergenic | 50.0% |
| ACTGGGACACGTCTAATCCG+AGG | + | Chr2:78334441-78334460 | MsG0280011012.01.T01:intron | 55.0% | |
| AGAACCGACATAGCAGTGGG+GGG | - | Chr2:78333083-78333102 | None:intergenic | 55.0% | |
| CAGAACCGACATAGCAGTGG+GGG | - | Chr2:78333084-78333103 | None:intergenic | 55.0% | |
| CACGACACGTGTCCGACACT+GGG | + | Chr2:78334424-78334443 | MsG0280011012.01.T01:intron | 60.0% | |
| CTCACCCCCCACTGCTATGT+CGG | + | Chr2:78333076-78333095 | MsG0280011012.01.T01:intron | 60.0% | |
| GCACGACACGTGTCCGACAC+TGG | + | Chr2:78334423-78334442 | MsG0280011012.01.T01:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 78332782 | 78335205 | 78332782 | ID=MsG0280011012.01;Name=MsG0280011012.01 |
| Chr2 | mRNA | 78332782 | 78335205 | 78332782 | ID=MsG0280011012.01.T01;Parent=MsG0280011012.01;Name=MsG0280011012.01.T01;_AED=0.50;_eAED=0.50;_QI=55|1|1|1|0|0|4|280|88 |
| Chr2 | exon | 78332782 | 78332873 | 78332782 | ID=MsG0280011012.01.T01:exon:9818;Parent=MsG0280011012.01.T01 |
| Chr2 | exon | 78332966 | 78333034 | 78332966 | ID=MsG0280011012.01.T01:exon:9819;Parent=MsG0280011012.01.T01 |
| Chr2 | exon | 78333121 | 78333227 | 78333121 | ID=MsG0280011012.01.T01:exon:9820;Parent=MsG0280011012.01.T01 |
| Chr2 | exon | 78334872 | 78335205 | 78334872 | ID=MsG0280011012.01.T01:exon:9821;Parent=MsG0280011012.01.T01 |
| Chr2 | five_prime_UTR | 78332782 | 78332836 | 78332782 | ID=MsG0280011012.01.T01:five_prime_utr;Parent=MsG0280011012.01.T01 |
| Chr2 | CDS | 78332837 | 78332873 | 78332837 | ID=MsG0280011012.01.T01:cds;Parent=MsG0280011012.01.T01 |
| Chr2 | CDS | 78332966 | 78333034 | 78332966 | ID=MsG0280011012.01.T01:cds;Parent=MsG0280011012.01.T01 |
| Chr2 | CDS | 78333121 | 78333227 | 78333121 | ID=MsG0280011012.01.T01:cds;Parent=MsG0280011012.01.T01 |
| Chr2 | CDS | 78334872 | 78334925 | 78334872 | ID=MsG0280011012.01.T01:cds;Parent=MsG0280011012.01.T01 |
| Chr2 | three_prime_UTR | 78334926 | 78335205 | 78334926 | ID=MsG0280011012.01.T01:three_prime_utr;Parent=MsG0280011012.01.T01 |
| Gene Sequence |
| Protein sequence |
