AlfalfaGEDB | MsG0280011072.01

M. sativa cultivar ZhongmuNo.1 / MsG0280011072.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011072.01.T01	XP_020223611.1	58.301	777	195	10	28	675	15	791	0	864

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011072.01.T01	Q43715	60.059	681	165	5	102	675	129	809	0	811

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011072.01.T01	A0A396JHC5	70.466	772	100	8	28	675	24	791	0.0	1019

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0280011072.01	MsG0480021424.01	0.811277	7.588588e-51	4.677227e-48
MsG0280011072.01	MsG0680030352.01	0.816740	4.731440e-52	3.380426e-49
MsG0280011072.01	MsG0880043061.01	0.820461	6.777037e-53	5.365914e-50
MsG0280011072.01	MsG0880046859.01	0.827234	1.751059e-54	1.680477e-51

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011072.01.T01	MTR_2g097700	70.466	772	100	8	28	675	14	781	0.0	1018
MsG0280011072.01.T01	MTR_4g064780	55.120	791	221	8	19	675	14	804	0.0	823
MsG0280011072.01.T01	MTR_4g064780	51.274	628	202	7	19	542	14	641	0.0	597
MsG0280011072.01.T01	MTR_5g013940	60.000	100	10	1	540	609	20	119	5.48e-29	114

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011072.01.T01	AT3G46740	59.178	681	171	6	102	675	138	818	0.0	796
MsG0280011072.01.T01	AT4G09080	47.101	414	124	10	339	675	12	407	3.11e-106	328
MsG0280011072.01.T01	AT4G09080	47.101	414	124	10	339	675	1	396	3.25e-106	328
MsG0280011072.01.T01	AT4G09080	60.150	266	68	2	448	675	60	325	4.24e-102	315
MsG0280011072.01.T01	AT1G35860	44.181	421	177	9	243	650	24	399	5.16e-91	289

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Find 213 sgRNAs with CRISPR-Local

Find 396 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGATGGATCAGAAGA+CGG	0.620917	2:+79131769	MsG0280011072.01.T01:CDS
AAACGGCGACGGTGGCGGTG+AGG	0.592870	2:-79130355	None:intergenic
AAACGGGTTGTTAGAGTGGA+CGG	0.587305	2:-79130396	None:intergenic
AACACCACTGGTGGTGGACA+TGG	0.516543	2:+79130430	MsG0280011072.01.T01:CDS
AACACCTTTAATATTGAAGC+AGG	0.427152	2:+79131638	MsG0280011072.01.T01:CDS
AACGGCGACGGTGGCGGTGA+GGG	0.457185	2:-79130354	None:intergenic
AACTCAATCGGCTTTGTCTG+CGG	0.610651	2:-79130930	None:intergenic
AAGAAAGGAGTTTGAGTGCT+AGG	0.400808	2:+79131088	MsG0280011072.01.T01:CDS
AAGACACGGCGGCGACGGGA+AGG	0.577840	2:-79130326	None:intergenic
AAGCTCTCTATGTATCACAG+GGG	0.819683	2:-79131301	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGGCTTCAATTACTCT+TGG	+	Chr2:79133824-79133843	MsG0280011072.01.T01:intron	30.0%
AACACCTTTAATATTGAAGC+AGG	+	Chr2:79131638-79131657	MsG0280011072.01.T01:CDS	30.0%
AAGAAGCGAAAAACAAAAGT+TGG	+	Chr2:79130681-79130700	MsG0280011072.01.T01:CDS	30.0%
ACACCTTTAATATTGAAGCA+GGG	+	Chr2:79131639-79131658	MsG0280011072.01.T01:CDS	30.0%
ACATGAACTATTTAGGCTAA+TGG	+	Chr2:79132378-79132397	MsG0280011072.01.T01:intron	30.0%
ATATCAGAATCCAACTCAAT+CGG	-	Chr2:79130945-79130964	None:intergenic	30.0%
ATCATCCTATTTAGATCCTA+TGG	+	Chr2:79133029-79133048	MsG0280011072.01.T01:intron	30.0%
ATCTAGTGGAATGTTTGAAA+AGG	+	Chr2:79130794-79130813	MsG0280011072.01.T01:CDS	30.0%
ATTCAATTGAACAAACTCAG+TGG	+	Chr2:79130618-79130637	MsG0280011072.01.T01:CDS	30.0%
ATTCACTTATGGACTTGTAA+TGG	+	Chr2:79132463-79132482	MsG0280011072.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	79130191	79134903	79130191	ID=MsG0280011072.01;Name=MsG0280011072.01
Chr2	mRNA	79130191	79134903	79130191	ID=MsG0280011072.01.T01;Parent=MsG0280011072.01;Name=MsG0280011072.01.T01;_AED=0.26;_eAED=0.27;_QI=0\|0.44\|0.3\|1\|0.77\|0.8\|10\|260\|675
Chr2	exon	79130191	79130494	79130191	ID=MsG0280011072.01.T01:exon:17454;Parent=MsG0280011072.01.T01
Chr2	exon	79130556	79130994	79130556	ID=MsG0280011072.01.T01:exon:17455;Parent=MsG0280011072.01.T01
Chr2	exon	79131086	79131332	79131086	ID=MsG0280011072.01.T01:exon:17456;Parent=MsG0280011072.01.T01
Chr2	exon	79131626	79131847	79131626	ID=MsG0280011072.01.T01:exon:17457;Parent=MsG0280011072.01.T01
Chr2	exon	79131950	79132056	79131950	ID=MsG0280011072.01.T01:exon:17458;Parent=MsG0280011072.01.T01
Chr2	exon	79132272	79132323	79132272	ID=MsG0280011072.01.T01:exon:17459;Parent=MsG0280011072.01.T01
Chr2	exon	79132440	79132691	79132440	ID=MsG0280011072.01.T01:exon:17460;Parent=MsG0280011072.01.T01
Chr2	exon	79134055	79134173	79134055	ID=MsG0280011072.01.T01:exon:17461;Parent=MsG0280011072.01.T01
Chr2	exon	79134263	79134308	79134263	ID=MsG0280011072.01.T01:exon:17462;Parent=MsG0280011072.01.T01
Chr2	exon	79134404	79134903	79134404	ID=MsG0280011072.01.T01:exon:17463;Parent=MsG0280011072.01.T01
Chr2	CDS	79130191	79130494	79130191	ID=MsG0280011072.01.T01:cds;Parent=MsG0280011072.01.T01
Chr2	CDS	79130556	79130994	79130556	ID=MsG0280011072.01.T01:cds;Parent=MsG0280011072.01.T01
Chr2	CDS	79131086	79131332	79131086	ID=MsG0280011072.01.T01:cds;Parent=MsG0280011072.01.T01
Chr2	CDS	79131626	79131847	79131626	ID=MsG0280011072.01.T01:cds;Parent=MsG0280011072.01.T01
Chr2	CDS	79131950	79132056	79131950	ID=MsG0280011072.01.T01:cds;Parent=MsG0280011072.01.T01
Chr2	CDS	79132272	79132323	79132272	ID=MsG0280011072.01.T01:cds;Parent=MsG0280011072.01.T01
Chr2	CDS	79132440	79132691	79132440	ID=MsG0280011072.01.T01:cds;Parent=MsG0280011072.01.T01
Chr2	CDS	79134055	79134173	79134055	ID=MsG0280011072.01.T01:cds;Parent=MsG0280011072.01.T01
Chr2	CDS	79134263	79134308	79134263	ID=MsG0280011072.01.T01:cds;Parent=MsG0280011072.01.T01
Chr2	CDS	79134404	79134643	79134404	ID=MsG0280011072.01.T01:cds;Parent=MsG0280011072.01.T01
Chr2	three_prime_UTR	79134644	79134903	79134644	ID=MsG0280011072.01.T01:three_prime_utr;Parent=MsG0280011072.01.T01

Gene Sequence

>MsG0280011072.01.T01

TTGTGCAGCTATCATCTTCTCAACTACAAACCATGTCTTCTCTCGTTCCATCCAACAACTTCGGCGGCACCATCTTGTCCGCCGTCGCAAAACAACAACAAACCCTCTCTCCCTCAATGCATCAACTGCTCTCAACCTTCCCGTCGCCGCCGTGTCTTCAAACCCCTCACCGCCACCGTCGCCGTTTCCTCCGCCGCTGCCATTGCCGTCCACTCTAACAACCCGTTTTCCTCTACGGCAACACCACTGGTGGTGGACATGGTGGTGGTGGAAGTAATGGTGGCAGTGGTGGTGGAGGTTGGTGCTATTGCTGATGAAACTAAATCTGAAGAATTTGATTCTCATGGTATGCCTGTCAATATAACTATTCAATTGAACAAACTCAGTGGTTTTAAGAAATACAAGATTTCTGAGATTACGTTTTTCGATAAGAAGCGAAAAACAAAAGTTGGTTCTGATGATTCTTTTAGTGAAATGATTTCTATTGTTCCGGGCGGAGTTTACACAAGGGCGCAACTACAGAAGGAATTGGATAGTTTGACATCTAGTGGAATGTTTGAAAAGGTTGATCTTGAAGGGAAGACAAATGCCGATGGAACTGTTGGAATCACGGTTTCATATAGTGAGAGTACTTGGGAGGCTGCTGAGAAGTTTCGTTGTATTAATGTTGGTATGATGCCGCAGACAAAGCCGATTGAGTTGGATTCTGATATGACTGAGAAGGAGGGTGAAACAGTATTTGAGAAAGAAAGGAGTTTGAGTGCTAGGTTGTTGCAGAAGATAGGGATAAGGTTCAGAAGTGGTATCATGATCAAGGGTATGCTTGTGCTTCAGTGGTTAATTTTGGAAATCTTAATACCAATGAGGTTGTTTTGTGAGGTTGTTGAAGGTGATATCAGTCAATTGCAAGTTCAGTTCATTGATAAGCTTGGCAATGTTGTTGAAGGCAATACTCAAGCCCCTGTGATACATAGAGAGCTTCCCAAAGAGCTGCGTCCGGGTAACACCTTTAATATTGAAGCAGGGAAGCAAGCTTTAAGAAACATAAATCCTCTTTCTTTGTTTTCGAATATTGAGGTTAATCCAAGGCCTGATGAGACTAGTGAGGGAGGCATAATTGTTGAAATTAAGGTAAAAGAGATGGATCAGAAGACGGCTGATGTCAGTACTGAATGGAGTATTATCCCTGGACGTGGAGGGTATCCAACTCTGGCCTCACTTCAACCTGGTGGAACTATTTCTTTTGAGCATCGGAATCTGCAAGGACTGAATAGAGCTCTTAGTGGTTCCATACAACCAGCAACTTCTTCAACCCTCAGTATTCACTGGGGGCCCCGGGCTGATGAAGTGCCACCAATATGGGTGATCGCGCAGAATTTCACGCCACAGAGTAAATTCACTTATGGACTTGTAATGGAAGAGATAACAACTCGTGACGAAGGTAATCAAATTTGTGCAAATGGTCAAAGAGTACTACCTGGTGGTGGAATTAGTGCAGATGGACCTCCTACCAGCCTCGGTGGTACTGGCATTGATCACATGGCATTTTTACAAGCGAATATCATTCGTGATAACACACGTTTTGTGAATGGAGCTGTAGTTGGAGCGAGAAATATGTTCCAGGTAGATCAAGGCCTAGGCATTGGCACCCAGTTCCCATTCTTCAATCGCCACCAACTAACTCTGACACGGTTTATCCAGTTGATGTCTGTGGAGGAAGGAGCTGGTAAACCACCCCGCCAGGGTTACAACATGGGTGAACTTGGTGCTGCCAGAAACATGCTGGAGCTTGCAGCTGAGTTACGGATACCTGTTAAAGGCATGCATGTGTATGGTTTTGCAGAGCATGGGAATGATCTAGGAAGTTCAAAGGATGTCAAAGGGAACCCTACAGAAGTCTATAGGCGAATGGGTCAAGGTTCATCTTATGGTGTTGGTGCCAAGCTTGGTTTGGTCAGAGCAGAATATGCCGTTGATCATAACTCAGGAACTGGTGCATTATATTTACGTTTTGGAGAGAGGTTTTAA

Protein sequence

>MsG0280011072.01.T01

LCSYHLLNYKPCLLSFHPTTSAAPSCPPSQNNNKPSLPQCINCSQPSRRRRVFKPLTATVAVSSAAAIAVHSNNPFSSTATPLVVDMVVVEVMVAVVVEVGAIADETKSEEFDSHGMPVNITIQLNKLSGFKKYKISEITFFDKKRKTKVGSDDSFSEMISIVPGGVYTRAQLQKELDSLTSSGMFEKVDLEGKTNADGTVGITVSYSESTWEAAEKFRCINVGMMPQTKPIELDSDMTEKEGETVFEKERSLSARLLQKIGIRFRSGIMIKGMLVLQWLILEILIPMRLFCEVVEGDISQLQVQFIDKLGNVVEGNTQAPVIHRELPKELRPGNTFNIEAGKQALRNINPLSLFSNIEVNPRPDETSEGGIIVEIKVKEMDQKTADVSTEWSIIPGRGGYPTLASLQPGGTISFEHRNLQGLNRALSGSIQPATSSTLSIHWGPRADEVPPIWVIAQNFTPQSKFTYGLVMEEITTRDEGNQICANGQRVLPGGGISADGPPTSLGGTGIDHMAFLQANIIRDNTRFVNGAVVGARNMFQVDQGLGIGTQFPFFNRHQLTLTRFIQLMSVEEGAGKPPRQGYNMGELGAARNMLELAAELRIPVKGMHVYGFAEHGNDLGSSKDVKGNPTEVYRRMGQGSSYGVGAKLGLVRAEYAVDHNSGTGALYLRFGERF*