AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013490.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013490.01.T01 MTR_4g098570 74.219 512 78 6 2 462 26 534 0.0 723
MsG0380013490.01.T01 MTR_4g098610 70.059 511 101 6 2 462 26 534 0.0 659
MsG0380013490.01.T01 MTR_5g014310 63.636 517 129 9 3 462 35 549 0.0 606
MsG0380013490.01.T01 MTR_1g115175 53.551 521 178 7 3 462 15 532 0.0 525
MsG0380013490.01.T01 MTR_1g115140 51.346 520 191 6 3 462 19 536 8.05e-178 509
MsG0380013490.01.T01 MTR_1g115190 53.065 522 180 9 3 461 16 535 1.43e-173 498
MsG0380013490.01.T01 MTR_1g077670 34.521 449 238 9 7 432 34 449 3.09e-79 254
MsG0380013490.01.T01 MTR_1g077660 34.076 449 232 10 8 432 29 437 2.94e-76 246
MsG0380013490.01.T01 MTR_7g106260 34.744 449 211 9 25 447 42 434 1.81e-69 229
MsG0380013490.01.T01 MTR_4g051575 37.430 358 188 6 10 336 19 371 3.41e-68 225
MsG0380013490.01.T01 MTR_2g087288 32.798 436 214 9 25 432 37 421 1.24e-67 223
MsG0380013490.01.T01 MTR_0710s0020 67.073 164 53 1 3 165 16 179 5.36e-67 213
MsG0380013490.01.T01 MTR_1g111250 32.432 481 254 10 24 439 73 547 3.47e-64 217
MsG0380013490.01.T01 MTR_7g094770 31.713 432 214 8 30 432 61 440 1.44e-63 212
MsG0380013490.01.T01 MTR_8g104110 28.937 508 274 8 11 433 50 555 2.36e-61 210
MsG0380013490.01.T01 MTR_6g084680 33.618 351 202 6 24 345 83 431 3.67e-57 199
MsG0380013490.01.T01 MTR_8g104130 30.522 498 244 11 25 433 59 543 5.09e-56 195
MsG0380013490.01.T01 MTR_2g087285 31.469 429 226 7 25 431 37 419 4.48e-55 190
MsG0380013490.01.T01 MTR_8g104120 28.876 516 266 12 11 433 46 553 6.57e-51 182
MsG0380013490.01.T01 MTR_4g051575 34.874 238 125 6 124 336 5 237 1.66e-33 129
MsG0380013490.01.T01 MTR_1g110380 40.777 103 35 4 102 203 6 83 1.94e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013490.01.T01 AT4G17970 55.340 515 131 10 10 434 28 533 0.0 528
MsG0380013490.01.T01 AT5G46610 55.865 503 146 9 21 449 37 537 5.90e-180 514
MsG0380013490.01.T01 AT5G46600 52.400 500 161 8 21 444 38 536 9.95e-172 493
MsG0380013490.01.T01 AT5G46610 52.485 503 139 10 21 449 37 513 1.85e-161 466
MsG0380013490.01.T01 AT5G46610 49.702 503 130 10 21 449 37 490 5.64e-146 426
MsG0380013490.01.T01 AT4G00910 31.780 472 261 8 5 447 42 481 1.66e-79 255
MsG0380013490.01.T01 AT3G18440 30.545 514 266 11 21 446 75 585 8.80e-66 222
MsG0380013490.01.T01 AT1G08440 36.705 346 189 6 25 344 13 354 1.12e-64 217
MsG0380013490.01.T01 AT3G11680 34.061 458 221 8 8 433 12 420 5.37e-62 209
MsG0380013490.01.T01 AT3G11680 34.061 458 221 8 8 433 14 422 5.51e-62 209
MsG0380013490.01.T01 AT1G08430 35.530 349 192 7 25 344 13 357 8.43e-58 198
MsG0380013490.01.T01 AT2G27240 35.331 317 178 5 25 317 13 326 5.20e-54 188
MsG0380013490.01.T01 AT1G18420 32.970 367 215 6 22 359 80 444 2.77e-53 188
MsG0380013490.01.T01 AT2G17470 27.778 486 273 10 25 436 53 534 2.88e-52 185
MsG0380013490.01.T01 AT2G17470 27.778 486 273 10 25 436 31 512 3.15e-52 184
MsG0380013490.01.T01 AT1G18420 32.782 363 213 6 26 359 1 361 1.07e-51 182
MsG0380013490.01.T01 AT2G27240 33.138 341 179 5 25 317 13 352 6.70e-51 180
MsG0380013490.01.T01 AT1G68600 27.811 507 278 12 11 433 27 529 2.65e-49 176
MsG0380013490.01.T01 AT1G25480 28.215 521 278 12 6 433 24 541 4.10e-49 176
MsG0380013490.01.T01 AT4G17585 62.667 75 23 2 10 83 28 98 1.01e-20 89.0

Find 86 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGTTTCATCAGTGGATT+TGG 0.222297 3:-39263961 None:intergenic
TGAAGGTTATAATGCAGTTT+TGG 0.288944 3:+39263935 MsG0380013490.01.T01:CDS
AGATGATCAGAAAATATTTC+TGG 0.295670 3:-39264890 None:intergenic
AATGCATGGATCACCCTTCT+TGG 0.296126 3:-39262329 None:intergenic
CTATTGGAACCACTCTATAA+AGG 0.307242 3:+39262392 MsG0380013490.01.T01:CDS
ATATGTACCTTCTAAAGATT+TGG 0.313382 3:-39263761 None:intergenic
ATACAGAAGAATTATGATTA+TGG 0.316662 3:+39263538 MsG0380013490.01.T01:CDS
TCTCAGCCACGACTCTTCTT+AGG 0.319543 3:+39264950 MsG0380013490.01.T01:CDS
TTTGGCTAGGCCTTCAAGTT+TGG 0.341867 3:-39263743 None:intergenic
GGAACTGTTCTTCGTCAATT+CGG 0.354703 3:+39264495 MsG0380013490.01.T01:CDS
GAACTGTTCTTCGTCAATTC+GGG 0.357831 3:+39264496 MsG0380013490.01.T01:CDS
CTGTTTGAGAACAGAAATTC+AGG 0.361676 3:+39264542 MsG0380013490.01.T01:CDS
AGTATCATTGCTATACCTAT+TGG 0.367771 3:+39262376 MsG0380013490.01.T01:CDS
ATTTGTTAATCTCGAGTTAT+CGG 0.371295 3:+39263587 MsG0380013490.01.T01:CDS
AAAGGACTAAATAGAGCATA+TGG 0.376564 3:+39263045 MsG0380013490.01.T01:CDS
CGCTTCTACACCATAGTCAT+TGG 0.385613 3:+39263643 MsG0380013490.01.T01:CDS
GAGAAGCCAGATGAGTAAAA+TGG 0.393937 3:+39265063 MsG0380013490.01.T01:CDS
GTTTGGCTTGGAAGACTACT+TGG 0.404391 3:+39262288 MsG0380013490.01.T01:CDS
TTCTCCAAACCATCATCTCT+TGG 0.412814 3:-39265259 None:intergenic
ATTGATGAAGTTGAAGAACT+TGG 0.413101 3:+39265175 MsG0380013490.01.T01:CDS
TATTGGAACCACTCTATAAA+GGG 0.415893 3:+39262393 MsG0380013490.01.T01:CDS
CTTTATAGAGTGGTTCCAAT+AGG 0.416567 3:-39262391 None:intergenic
CCGCAACAATGTTATTTGAT+TGG 0.419195 3:-39264985 None:intergenic
AACACCACAACCAATGACTA+TGG 0.421108 3:-39263653 None:intergenic
GATTGGCCAGCACGCTAGTT+GGG 0.426229 3:+39262415 MsG0380013490.01.T01:CDS
TTGGCATTTCCAAATTGGTC+GGG 0.435410 3:+39263694 MsG0380013490.01.T01:CDS
GGCCTAGCCAAATCTTTAGA+AGG 0.435581 3:+39263754 MsG0380013490.01.T01:CDS
TCGACAGCTTCCAAACTTGA+AGG 0.436005 3:+39263733 MsG0380013490.01.T01:CDS
GGATTGGCCAGCACGCTAGT+TGG 0.436721 3:+39262414 MsG0380013490.01.T01:CDS
AAAGAAGCAAAAGCAGCAAA+AGG 0.440203 3:-39265118 None:intergenic
GAAACCAAGAGATGATGGTT+TGG 0.454917 3:+39265255 MsG0380013490.01.T01:CDS
CTAGCCTTATGCAAGGATCC+TGG 0.458280 3:-39264802 None:intergenic
TACACCATAGTCATTGGTTG+TGG 0.460319 3:+39263649 MsG0380013490.01.T01:CDS
GAGAACAATTTACCTTCTCA+TGG 0.468672 3:+39265277 MsG0380013490.01.T01:CDS
TTTGTTAATCTCGAGTTATC+GGG 0.468833 3:+39263588 MsG0380013490.01.T01:CDS
ATCAGTTCGAGTACTATTCC+AGG 0.473859 3:+39264784 MsG0380013490.01.T01:CDS
CTGTTCTCAAACAGCCATGT+AGG 0.484619 3:-39264533 None:intergenic
TGGAAGCTGTCGAATTATGT+AGG 0.494355 3:-39263723 None:intergenic
TGTTCCTTGTGTAGCAGCTA+TGG 0.496476 3:-39265011 None:intergenic
TCTGAGAAACCAAGAGATGA+TGG 0.501505 3:+39265250 MsG0380013490.01.T01:CDS
GTGATCCATGCATTCAAAGT+TGG 0.506966 3:+39262338 MsG0380013490.01.T01:CDS
GCGTCGACTCTTTATGCTGT+TGG 0.508117 3:-39264858 None:intergenic
TTGATGAAGTTGAAGAACTT+GGG 0.511441 3:+39265176 MsG0380013490.01.T01:CDS
TTTGGCATTTCCAAATTGGT+CGG 0.514424 3:+39263693 MsG0380013490.01.T01:CDS
TATTCCAGGATCCTTGCATA+AGG 0.519613 3:+39264798 MsG0380013490.01.T01:CDS
TCATAATTCTTCTGTATACA+AGG 0.520268 3:-39263532 None:intergenic
GAACCACTCTATAAAGGGAT+TGG 0.523484 3:+39262398 MsG0380013490.01.T01:CDS
TGTTCTCAAACAGCCATGTA+GGG 0.524897 3:-39264532 None:intergenic
ATGAACCAACTTTGAATGCA+TGG 0.529901 3:-39262343 None:intergenic
TGGAAGACTACTTGGAAAGT+AGG 0.531985 3:+39262296 MsG0380013490.01.T01:CDS
AATAGTACTCGAACTGATCC+CGG 0.532369 3:-39264779 None:intergenic
CAAATCCACTGATGAAACAT+TGG 0.532885 3:+39263962 MsG0380013490.01.T01:CDS
AGAACAATTTACCTTCTCAT+GGG 0.537533 3:+39265278 MsG0380013490.01.T01:CDS
TCTGAAGATATAATATATGA+AGG 0.552789 3:+39263918 MsG0380013490.01.T01:CDS
TGGCATTTCCAAATTGGTCG+GGG 0.556663 3:+39263695 MsG0380013490.01.T01:CDS
GCATATGGGACACTATTAGC+AGG 0.562768 3:+39263060 MsG0380013490.01.T01:CDS
AAAATATTTCTGGTGAGCAA+TGG 0.566446 3:-39264880 None:intergenic
ACTTACCAATGTTTCATCAG+TGG 0.570743 3:-39263967 None:intergenic
TGGCCAATCCCTTTATAGAG+TGG 0.573120 3:-39262401 None:intergenic
TAGGATGTGATGATCCAAGA+AGG 0.573463 3:+39262315 MsG0380013490.01.T01:CDS
TGACAGCCCAACTAGCGTGC+TGG 0.577693 3:-39262421 None:intergenic
AGGAATGAACCTCATATATG+TGG 0.584467 3:-39263512 None:intergenic
TTGCATAAGGCTAGCAGCAG+AGG 0.586458 3:+39264811 MsG0380013490.01.T01:CDS
GATCTGCAGCCACATATATG+AGG 0.588489 3:+39263503 MsG0380013490.01.T01:CDS
TATACGTTGGTAGCCCTACA+TGG 0.591377 3:+39264519 MsG0380013490.01.T01:CDS
TACCTTCTAAAGATTTGGCT+AGG 0.594318 3:-39263756 None:intergenic
GGCTGTCATAACCGTCGTCG+TGG 0.596355 3:+39262436 MsG0380013490.01.T01:CDS
AAGGACTAAATAGAGCATAT+GGG 0.606495 3:+39263046 MsG0380013490.01.T01:CDS
GAACAATTTACCTTCTCATG+GGG 0.607787 3:+39265279 MsG0380013490.01.T01:CDS
TGCTTCAAAGAGTATACACC+TGG 0.616472 3:+39265208 MsG0380013490.01.T01:CDS
GCAGGGGAAACTTTATGCAA+AGG 0.617655 3:+39263027 MsG0380013490.01.T01:intron
CCAATCAAATAACATTGTTG+CGG 0.620652 3:+39264985 MsG0380013490.01.T01:CDS
CTAACAGAAAATTCATCACC+AGG 0.621086 3:-39265226 None:intergenic
ATGAAGTTGAAGAACTTGGG+AGG 0.621721 3:+39265179 MsG0380013490.01.T01:CDS
GGAGAAATACATGTTTCTGA+TGG 0.629883 3:+39263882 MsG0380013490.01.T01:CDS
GCCACCATAGCTGCTACACA+AGG 0.630768 3:+39265007 MsG0380013490.01.T01:CDS
GTAGTCTTCCAAGCCAAACA+AGG 0.635402 3:-39262284 None:intergenic
GAAGAATTATGATTATGGTG+TGG 0.635404 3:+39263543 MsG0380013490.01.T01:CDS
TCTGCTGCTAGCCTTATGCA+AGG 0.639249 3:-39264809 None:intergenic
TTAGATCCTAAGAAGAGTCG+TGG 0.645776 3:-39264956 None:intergenic
AGGATGTGATGATCCAAGAA+GGG 0.652421 3:+39262316 MsG0380013490.01.T01:CDS
TCCTTGTGTAGCAGCTATGG+TGG 0.653095 3:-39265008 None:intergenic
GGCATTTCCAAATTGGTCGG+GGG 0.657317 3:+39263696 MsG0380013490.01.T01:CDS
GAACTCGAAAACCACGACGA+CGG 0.657825 3:-39262447 None:intergenic
TCGTCAATTCGGGTATACGT+TGG 0.676005 3:+39264506 MsG0380013490.01.T01:CDS
AACAATTTACCTTCTCATGG+GGG 0.679321 3:+39265280 MsG0380013490.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAGTTAAAAAGATAAG+TGG - Chr3:39264153-39264172 None:intergenic 15.0%
!! ATATAGTTATTAGAATTAGT+TGG + Chr3:39262581-39262600 MsG0380013490.01.T01:intron 15.0%
!! ATATCTAAATTTATTGTGAA+TGG + Chr3:39263477-39263496 MsG0380013490.01.T01:intron 15.0%
!! CATATTACAATTAATGAAAA+TGG + Chr3:39264606-39264625 MsG0380013490.01.T01:intron 15.0%
!! CATTATATATATAGTAACAT+AGG + Chr3:39262953-39262972 MsG0380013490.01.T01:intron 15.0%
!! TTATATAGTATTCATAATCA+AGG - Chr3:39262762-39262781 None:intergenic 15.0%
!!! TTTTTTTTTTGTTAGAATTG+AGG - Chr3:39263445-39263464 None:intergenic 15.0%
!! ATACAGAAGAATTATGATTA+TGG + Chr3:39263538-39263557 MsG0380013490.01.T01:CDS 20.0%
!! TCTGAAGATATAATATATGA+AGG + Chr3:39263918-39263937 MsG0380013490.01.T01:CDS 20.0%
!! TGTCAAATTCATATTATGAA+TGG + Chr3:39263783-39263802 MsG0380013490.01.T01:intron 20.0%
!! TTTCACAATAAATATGTTGT+TGG - Chr3:39263306-39263325 None:intergenic 20.0%
!!! CTAGTTTATTTTGATTTTGA+TGG + Chr3:39263005-39263024 MsG0380013490.01.T01:intron 20.0%
!!! GATTTTGTTTCAAATTCATT+TGG + Chr3:39263102-39263121 MsG0380013490.01.T01:CDS 20.0%
!!! TAACATTTTATTGTAATGTG+TGG + Chr3:39263826-39263845 MsG0380013490.01.T01:intron 20.0%
!!! TGTGTCAATGAATTTTTTTA+TGG + Chr3:39263861-39263880 MsG0380013490.01.T01:CDS 20.0%
! AAAATGATATAGTACCTGTT+TGG + Chr3:39264194-39264213 MsG0380013490.01.T01:intron 25.0%
! AAAGTTTGAGTAACTACAAA+CGG - Chr3:39263382-39263401 None:intergenic 25.0%
! AGATGATCAGAAAATATTTC+TGG - Chr3:39264893-39264912 None:intergenic 25.0%
! CTAAATTTATTGTGAATGGT+AGG + Chr3:39263481-39263500 MsG0380013490.01.T01:intron 25.0%
! CTCAATTCAACATCATTAAA+TGG + Chr3:39264715-39264734 MsG0380013490.01.T01:intron 25.0%
! TCATAATTCTTCTGTATACA+AGG - Chr3:39263535-39263554 None:intergenic 25.0%
!! ATATGTACCTTCTAAAGATT+TGG - Chr3:39263764-39263783 None:intergenic 25.0%
!! ATTTGTTAATCTCGAGTTAT+CGG + Chr3:39263587-39263606 MsG0380013490.01.T01:CDS 25.0%
!! ATTTTTGTTGAGAGACTAAA+AGG + Chr3:39262257-39262276 MsG0380013490.01.T01:CDS 25.0%
!! TATGTTTCTACTGTTAAAAG+TGG - Chr3:39264590-39264609 None:intergenic 25.0%
!!! ATTTGTTACCTTGATTTTCT+TGG + Chr3:39262654-39262673 MsG0380013490.01.T01:intron 25.0%
!!! TTATTTTGATTTTGATGGCA+GGG + Chr3:39263010-39263029 MsG0380013490.01.T01:intron 25.0%
!!! TTTATTTTGATTTTGATGGC+AGG + Chr3:39263009-39263028 MsG0380013490.01.T01:intron 25.0%
!!! TTTTTTTCTTTTGTAGACAC+CGG + Chr3:39264760-39264779 MsG0380013490.01.T01:intron 25.0%
AAAGGACTAAATAGAGCATA+TGG + Chr3:39263045-39263064 MsG0380013490.01.T01:CDS 30.0%
AAGGACTAAATAGAGCATAT+GGG + Chr3:39263046-39263065 MsG0380013490.01.T01:CDS 30.0%
ACTAGAAATTACACTCATTC+AGG - Chr3:39262990-39263009 None:intergenic 30.0%
AGAACAATTTACCTTCTCAT+GGG + Chr3:39265278-39265297 MsG0380013490.01.T01:CDS 30.0%
AGTATCATTGCTATACCTAT+TGG + Chr3:39262376-39262395 MsG0380013490.01.T01:CDS 30.0%
ATTGATGAAGTTGAAGAACT+TGG + Chr3:39265175-39265194 MsG0380013490.01.T01:CDS 30.0%
CATAAAATATGCAAGATCTG+AGG - Chr3:39262698-39262717 None:intergenic 30.0%
CCAATCAAATAACATTGTTG+CGG + Chr3:39264985-39265004 MsG0380013490.01.T01:CDS 30.0%
GAAATTAGAGTTTGACAGAA+TGG - Chr3:39262826-39262845 None:intergenic 30.0%
GAAGAATTATGATTATGGTG+TGG + Chr3:39263543-39263562 MsG0380013490.01.T01:CDS 30.0%
GTATTTAAGTACTTGATCAC+AGG + Chr3:39263338-39263357 MsG0380013490.01.T01:intron 30.0%
TATATAGTAACATAGGCACA+TGG + Chr3:39262960-39262979 MsG0380013490.01.T01:intron 30.0%
TATTGGAACCACTCTATAAA+GGG + Chr3:39262393-39262412 MsG0380013490.01.T01:CDS 30.0%
TCAATCGATCTTACAATGAT+CGG + Chr3:39263995-39264014 MsG0380013490.01.T01:intron 30.0%
TGGCAACAATATGTAAAAGT+TGG + Chr3:39264474-39264493 MsG0380013490.01.T01:intron 30.0%
TTCAGAACAGAATCATTTGA+AGG - Chr3:39264392-39264411 None:intergenic 30.0%
TTCAGGTAACATAACTTTGT+TGG + Chr3:39264559-39264578 MsG0380013490.01.T01:intron 30.0%
TTGATGAAGTTGAAGAACTT+GGG + Chr3:39265176-39265195 MsG0380013490.01.T01:CDS 30.0%
TTTGTTAATCTCGAGTTATC+GGG + Chr3:39263588-39263607 MsG0380013490.01.T01:CDS 30.0%
! ACTAAAAGGTTTTCCTTGTT+TGG + Chr3:39262271-39262290 MsG0380013490.01.T01:CDS 30.0%
! ACTTTTACATATTGTTGCCA+TGG - Chr3:39264474-39264493 None:intergenic 30.0%
! TATGCGTATGTTTGTTTCTT+CGG - Chr3:39264312-39264331 None:intergenic 30.0%
! TGAAGGTTATAATGCAGTTT+TGG + Chr3:39263935-39263954 MsG0380013490.01.T01:CDS 30.0%
!! AAAACAGAACCAACTGATTT+TGG - Chr3:39262498-39262517 None:intergenic 30.0%
!! AAAATATTTCTGGTGAGCAA+TGG - Chr3:39264883-39264902 None:intergenic 30.0%
!! ATCTTTCAAGCTGTTTTCAT+TGG + Chr3:39263129-39263148 MsG0380013490.01.T01:CDS 30.0%
!! TAATAGCCATTTTACTCATC+TGG - Chr3:39265072-39265091 None:intergenic 30.0%
!!! GTTTTTTGGCATTTCCAAAT+TGG + Chr3:39263689-39263708 MsG0380013490.01.T01:CDS 30.0%
!!! TATTTTGATTTTGATGGCAG+GGG + Chr3:39263011-39263030 MsG0380013490.01.T01:intron 30.0%
!!! TTGTCTCTTGATGAGTTTTT+TGG + Chr3:39263675-39263694 MsG0380013490.01.T01:CDS 30.0%
!!! TTTTTTCACTGTACACAGTT+AGG - Chr3:39264361-39264380 None:intergenic 30.0%
!!! TTTTTTCTTTTGTAGACACC+GGG + Chr3:39264761-39264780 MsG0380013490.01.T01:intron 30.0%
AAAGAAGCAAAAGCAGCAAA+AGG - Chr3:39265121-39265140 None:intergenic 35.0%
AACAAGACAGACGTCAAAAA+AGG + Chr3:39265033-39265052 MsG0380013490.01.T01:CDS 35.0%
AACAATTTACCTTCTCATGG+GGG + Chr3:39265280-39265299 MsG0380013490.01.T01:CDS 35.0%
ACTTACCAATGTTTCATCAG+TGG - Chr3:39263970-39263989 None:intergenic 35.0%
ACTTCCTATCCAAAATCAGT+TGG + Chr3:39262486-39262505 MsG0380013490.01.T01:intron 35.0%
AGCAACTATTGCCAAATCAA+CGG - Chr3:39264121-39264140 None:intergenic 35.0%
AGGAATGAACCTCATATATG+TGG - Chr3:39263515-39263534 None:intergenic 35.0%
ATGAACCAACTTTGAATGCA+TGG - Chr3:39262346-39262365 None:intergenic 35.0%
ATGTAGCTTCTCAAAATCCA+CGG - Chr3:39264249-39264268 None:intergenic 35.0%
CAAATCCACTGATGAAACAT+TGG + Chr3:39263962-39263981 MsG0380013490.01.T01:CDS 35.0%
CTAACAGAAAATTCATCACC+AGG - Chr3:39265229-39265248 None:intergenic 35.0%
CTATTGGAACCACTCTATAA+AGG + Chr3:39262392-39262411 MsG0380013490.01.T01:CDS 35.0%
CTGTTTGAGAACAGAAATTC+AGG + Chr3:39264542-39264561 MsG0380013490.01.T01:CDS 35.0%
CTTTATAGAGTGGTTCCAAT+AGG - Chr3:39262394-39262413 None:intergenic 35.0%
GAACAATTTACCTTCTCATG+GGG + Chr3:39265279-39265298 MsG0380013490.01.T01:CDS 35.0%
GAGAACAATTTACCTTCTCA+TGG + Chr3:39265277-39265296 MsG0380013490.01.T01:CDS 35.0%
TAGGAAGTGATATATACCTG+CGG - Chr3:39262474-39262493 None:intergenic 35.0%
TGAACTTAGCTCAGTTTGTA+AGG - Chr3:39262727-39262746 None:intergenic 35.0%
TTTGGCATTTCCAAATTGGT+CGG + Chr3:39263693-39263712 MsG0380013490.01.T01:CDS 35.0%
! AAAGAAGTTAGTAGCGCTTT+TGG - Chr3:39264742-39264761 None:intergenic 35.0%
! CAATGTTTCATCAGTGGATT+TGG - Chr3:39263964-39263983 None:intergenic 35.0%
! CCGCAACAATGTTATTTGAT+TGG - Chr3:39264988-39265007 None:intergenic 35.0%
! GGAGAAATACATGTTTCTGA+TGG + Chr3:39263882-39263901 MsG0380013490.01.T01:CDS 35.0%
! TACCTTCTAAAGATTTGGCT+AGG - Chr3:39263759-39263778 None:intergenic 35.0%
! TGATTTGGCAATAGTTGCTT+CGG + Chr3:39264122-39264141 MsG0380013490.01.T01:intron 35.0%
! TGCTTTTGCTTCTTTGCTTT+TGG + Chr3:39265126-39265145 MsG0380013490.01.T01:CDS 35.0%
! TGTTACCTTGATTTTCTTGG+TGG + Chr3:39262657-39262676 MsG0380013490.01.T01:intron 35.0%
! TTTTCTTTCAATCACGCTGA+CGG - Chr3:39263260-39263279 None:intergenic 35.0%
!! AGAACCAACTGATTTTGGAT+AGG - Chr3:39262493-39262512 None:intergenic 35.0%
!! CTATCTTTAAGCTAGTCTTG+AGG + Chr3:39263419-39263438 MsG0380013490.01.T01:intron 35.0%
!! GGTGTTGCAGTTTTTGTAAT+AGG + Chr3:39263150-39263169 MsG0380013490.01.T01:CDS 35.0%
!! TGCTTCTTTGCTTTTGGAAA+CGG + Chr3:39265132-39265151 MsG0380013490.01.T01:CDS 35.0%
AACACCACAACCAATGACTA+TGG - Chr3:39263656-39263675 None:intergenic 40.0%
AATAGTACTCGAACTGATCC+CGG - Chr3:39264782-39264801 None:intergenic 40.0%
ACAGACGTCAAAAAAGGAAG+TGG + Chr3:39265039-39265058 MsG0380013490.01.T01:CDS 40.0%
AGGATGTGATGATCCAAGAA+GGG + Chr3:39262316-39262335 MsG0380013490.01.T01:CDS 40.0%
ATAGTACCTGTTTGGATGTG+CGG + Chr3:39264202-39264221 MsG0380013490.01.T01:intron 40.0%
ATCAGTTCGAGTACTATTCC+AGG + Chr3:39264784-39264803 MsG0380013490.01.T01:CDS 40.0%
ATGAAGTTGAAGAACTTGGG+AGG + Chr3:39265179-39265198 MsG0380013490.01.T01:CDS 40.0%
GAACCACTCTATAAAGGGAT+TGG + Chr3:39262398-39262417 MsG0380013490.01.T01:CDS 40.0%
GAACTGTTCTTCGTCAATTC+GGG + Chr3:39264496-39264515 MsG0380013490.01.T01:CDS 40.0%
GAGAAGCCAGATGAGTAAAA+TGG + Chr3:39265063-39265082 MsG0380013490.01.T01:CDS 40.0%
GCGAAAAAATGTGACTGATG+CGG + Chr3:39262541-39262560 MsG0380013490.01.T01:intron 40.0%
GGAACTGTTCTTCGTCAATT+CGG + Chr3:39264495-39264514 MsG0380013490.01.T01:CDS 40.0%
GTGATCCATGCATTCAAAGT+TGG + Chr3:39262338-39262357 MsG0380013490.01.T01:CDS 40.0%
TACATGCAAGTAAGGAACCA+AGG + Chr3:39264424-39264443 MsG0380013490.01.T01:intron 40.0%
TAGGATGTGATGATCCAAGA+AGG + Chr3:39262315-39262334 MsG0380013490.01.T01:CDS 40.0%
TATTCCAGGATCCTTGCATA+AGG + Chr3:39264798-39264817 MsG0380013490.01.T01:CDS 40.0%
TCTGAGAAACCAAGAGATGA+TGG + Chr3:39265250-39265269 MsG0380013490.01.T01:CDS 40.0%
TGACAGTACCTAGAAAACCT+TGG - Chr3:39264444-39264463 None:intergenic 40.0%
TGGAAGACTACTTGGAAAGT+AGG + Chr3:39262296-39262315 MsG0380013490.01.T01:CDS 40.0%
TGGAAGCTGTCGAATTATGT+AGG - Chr3:39263726-39263745 None:intergenic 40.0%
TGTTCTCAAACAGCCATGTA+GGG - Chr3:39264535-39264554 None:intergenic 40.0%
TTAGATCCTAAGAAGAGTCG+TGG - Chr3:39264959-39264978 None:intergenic 40.0%
TTCTCCAAACCATCATCTCT+TGG - Chr3:39265262-39265281 None:intergenic 40.0%
TTGCAAGTTTCAACCGCTAT+TGG - Chr3:39262908-39262927 None:intergenic 40.0%
TTGGCATTTCCAAATTGGTC+GGG + Chr3:39263694-39263713 MsG0380013490.01.T01:CDS 40.0%
! ATGTGTTGCAACCGTTGATT+TGG + Chr3:39264107-39264126 MsG0380013490.01.T01:intron 40.0%
! GAAACCAAGAGATGATGGTT+TGG + Chr3:39265255-39265274 MsG0380013490.01.T01:CDS 40.0%
! GATTCTGTTCTGAATTGTGC+AGG + Chr3:39264398-39264417 MsG0380013490.01.T01:intron 40.0%
! GTAAGGAACCAAGGTTTTCT+AGG + Chr3:39264433-39264452 MsG0380013490.01.T01:intron 40.0%
! TACACCATAGTCATTGGTTG+TGG + Chr3:39263649-39263668 MsG0380013490.01.T01:CDS 40.0%
! TACCTTGATTTTCTTGGTGG+TGG + Chr3:39262660-39262679 MsG0380013490.01.T01:intron 40.0%
! TGCTTCAAAGAGTATACACC+TGG + Chr3:39265208-39265227 MsG0380013490.01.T01:CDS 40.0%
!! AAGGTTTTCCTTGTTTGGCT+TGG + Chr3:39262276-39262295 MsG0380013490.01.T01:CDS 40.0%
!! TTCTTTGCTTTTGGAAACGG+TGG + Chr3:39265135-39265154 MsG0380013490.01.T01:CDS 40.0%
!!! TTGATTTTCTTGGTGGTGGT+CGG + Chr3:39262664-39262683 MsG0380013490.01.T01:intron 40.0%
AATGCATGGATCACCCTTCT+TGG - Chr3:39262332-39262351 None:intergenic 45.0%
CAAACTGAGCTAAGTTCACG+AGG + Chr3:39262729-39262748 MsG0380013490.01.T01:intron 45.0%
CGCTTCTACACCATAGTCAT+TGG + Chr3:39263643-39263662 MsG0380013490.01.T01:CDS 45.0%
CTACCATGCTTCTCCAATAG+CGG + Chr3:39262892-39262911 MsG0380013490.01.T01:intron 45.0%
CTGTTCTCAAACAGCCATGT+AGG - Chr3:39264536-39264555 None:intergenic 45.0%
GACCACCACCAAGAAAATCA+AGG - Chr3:39262665-39262684 None:intergenic 45.0%
GATCTGCAGCCACATATATG+AGG + Chr3:39263503-39263522 MsG0380013490.01.T01:CDS 45.0%
GCAGGCATTACATGCAAGTA+AGG + Chr3:39264416-39264435 MsG0380013490.01.T01:intron 45.0%
GCAGGGGAAACTTTATGCAA+AGG + Chr3:39263027-39263046 MsG0380013490.01.T01:intron 45.0%
GCATATGGGACACTATTAGC+AGG + Chr3:39263060-39263079 MsG0380013490.01.T01:CDS 45.0%
GGCCTAGCCAAATCTTTAGA+AGG + Chr3:39263754-39263773 MsG0380013490.01.T01:CDS 45.0%
GGTACTGTCACAAATCTCCA+TGG + Chr3:39264454-39264473 MsG0380013490.01.T01:intron 45.0%
GTAGTCTTCCAAGCCAAACA+AGG - Chr3:39262287-39262306 None:intergenic 45.0%
TCGACAGCTTCCAAACTTGA+AGG + Chr3:39263733-39263752 MsG0380013490.01.T01:CDS 45.0%
TCGTCAATTCGGGTATACGT+TGG + Chr3:39264506-39264525 MsG0380013490.01.T01:CDS 45.0%
TGGCATTTCCAAATTGGTCG+GGG + Chr3:39263695-39263714 MsG0380013490.01.T01:CDS 45.0%
TGGCCAATCCCTTTATAGAG+TGG - Chr3:39262404-39262423 None:intergenic 45.0%
TGTTCCTTGTGTAGCAGCTA+TGG - Chr3:39265014-39265033 None:intergenic 45.0%
! CTTTTACCGCACATCCAAAC+AGG - Chr3:39264211-39264230 None:intergenic 45.0%
! GAGTCGTGGCTGAGATTTTA+TGG - Chr3:39264945-39264964 None:intergenic 45.0%
! TTTGGCTAGGCCTTCAAGTT+TGG - Chr3:39263746-39263765 None:intergenic 45.0%
!! CGGTAAAAGTGTCATTCTCG+CGG + Chr3:39264222-39264241 MsG0380013490.01.T01:intron 45.0%
!! GGTAAAAGTGTCATTCTCGC+GGG + Chr3:39264223-39264242 MsG0380013490.01.T01:intron 45.0%
!! GTAGCTTTATGCTGAACGTG+CGG + Chr3:39264272-39264291 MsG0380013490.01.T01:intron 45.0%
!! GTTTGGCTTGGAAGACTACT+TGG + Chr3:39262288-39262307 MsG0380013490.01.T01:CDS 45.0%
!! TATACGTTGGTAGCCCTACA+TGG + Chr3:39264519-39264538 MsG0380013490.01.T01:CDS 45.0%
!!! TGATTTTCTTGGTGGTGGTC+GGG + Chr3:39262665-39262684 MsG0380013490.01.T01:intron 45.0%
AATCACGCTGACGGTTGTGT+TGG - Chr3:39263251-39263270 None:intergenic 50.0%
ATCACGCTGACGGTTGTGTT+GGG - Chr3:39263250-39263269 None:intergenic 50.0%
CAACCGCTATTGGAGAAGCA+TGG - Chr3:39262898-39262917 None:intergenic 50.0%
GAACTCGAAAACCACGACGA+CGG - Chr3:39262450-39262469 None:intergenic 50.0%
GGCATTTCCAAATTGGTCGG+GGG + Chr3:39263696-39263715 MsG0380013490.01.T01:CDS 50.0%
TCCTTGTGTAGCAGCTATGG+TGG - Chr3:39265011-39265030 None:intergenic 50.0%
TCTCAGCCACGACTCTTCTT+AGG + Chr3:39264950-39264969 MsG0380013490.01.T01:CDS 50.0%
TTGCATAAGGCTAGCAGCAG+AGG + Chr3:39264811-39264830 MsG0380013490.01.T01:CDS 50.0%
!! CTAGCCTTATGCAAGGATCC+TGG - Chr3:39264805-39264824 None:intergenic 50.0%
!! GCGTCGACTCTTTATGCTGT+TGG - Chr3:39264861-39264880 None:intergenic 50.0%
!! TCTGCTGCTAGCCTTATGCA+AGG - Chr3:39264812-39264831 None:intergenic 50.0%
!!! GATTTTCTTGGTGGTGGTCG+GGG + Chr3:39262666-39262685 MsG0380013490.01.T01:intron 50.0%
AGGTCTTCCCCCGACCAATT+TGG - Chr3:39263706-39263725 None:intergenic 55.0%
GCCACCATAGCTGCTACACA+AGG + Chr3:39265007-39265026 MsG0380013490.01.T01:CDS 55.0%
GCTTTATGCTGAACGTGCGG+CGG + Chr3:39264275-39264294 MsG0380013490.01.T01:intron 55.0%
! GATTGGCCAGCACGCTAGTT+GGG + Chr3:39262415-39262434 MsG0380013490.01.T01:CDS 55.0%
!!! GTGGTTTTCGAGTTCACCGC+AGG + Chr3:39262455-39262474 MsG0380013490.01.T01:CDS 55.0%
GGCTGTCATAACCGTCGTCG+TGG + Chr3:39262436-39262455 MsG0380013490.01.T01:CDS 60.0%
TGACAGCCCAACTAGCGTGC+TGG - Chr3:39262424-39262443 None:intergenic 60.0%
!! GGATTGGCCAGCACGCTAGT+TGG + Chr3:39262414-39262433 MsG0380013490.01.T01:CDS 60.0%
! AGTGTCATTCTCGCGGGCCG+TGG + Chr3:39264229-39264248 MsG0380013490.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 39262239 39265309 39262239 ID=MsG0380013490.01;Name=MsG0380013490.01
Chr3 mRNA 39262239 39265309 39262239 ID=MsG0380013490.01.T01;Parent=MsG0380013490.01;Name=MsG0380013490.01.T01;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|0.6|0.66|6|0|462
Chr3 exon 39262239 39262476 39262239 ID=MsG0380013490.01.T01:exon:14385;Parent=MsG0380013490.01.T01
Chr3 exon 39263031 39263171 39263031 ID=MsG0380013490.01.T01:exon:14386;Parent=MsG0380013490.01.T01
Chr3 exon 39263503 39263775 39263503 ID=MsG0380013490.01.T01:exon:14387;Parent=MsG0380013490.01.T01
Chr3 exon 39263859 39263990 39263859 ID=MsG0380013490.01.T01:exon:14388;Parent=MsG0380013490.01.T01
Chr3 exon 39264493 39264563 39264493 ID=MsG0380013490.01.T01:exon:14389;Parent=MsG0380013490.01.T01
Chr3 exon 39264776 39265309 39264776 ID=MsG0380013490.01.T01:exon:14390;Parent=MsG0380013490.01.T01
Chr3 CDS 39262239 39262476 39262239 ID=MsG0380013490.01.T01:cds;Parent=MsG0380013490.01.T01
Chr3 CDS 39263031 39263171 39263031 ID=MsG0380013490.01.T01:cds;Parent=MsG0380013490.01.T01
Chr3 CDS 39263503 39263775 39263503 ID=MsG0380013490.01.T01:cds;Parent=MsG0380013490.01.T01
Chr3 CDS 39263859 39263990 39263859 ID=MsG0380013490.01.T01:cds;Parent=MsG0380013490.01.T01
Chr3 CDS 39264493 39264563 39264493 ID=MsG0380013490.01.T01:cds;Parent=MsG0380013490.01.T01
Chr3 CDS 39264776 39265309 39264776 ID=MsG0380013490.01.T01:cds;Parent=MsG0380013490.01.T01
Gene Sequence

>MsG0380013490.01.T01

ATGAAGAAACGTTTTCATATTTTTGTTGAGAGACTAAAAGGTTTTCCTTGTTTGGCTTGGAAGACTACTTGGAAAGTAGGATGTGATGATCCAAGAAGGGTGATCCATGCATTCAAAGTTGGTTCATCTCTTACACTAGTATCATTGCTATACCTATTGGAACCACTCTATAAAGGGATTGGCCAGCACGCTAGTTGGGCTGTCATAACCGTCGTCGTGGTTTTCGAGTTCACCGCAGGGGAAACTTTATGCAAAGGACTAAATAGAGCATATGGGACACTATTAGCAGGAGTATTAGCATTTCTTCTTGATTTTGTTTCAAATTCATTTGGTCAGATCTTTCAAGCTGTTTTCATTGGTGTTGCAGTTTTTGTAATAGGATCTGCAGCCACATATATGAGGTTCATTCCTTGTATACAGAAGAATTATGATTATGGTGTGGTTATATTTCTCTTGACGTTCAATTTGTTAATCTCGAGTTATCGGGTTGATCATCATGTCTTGAAGATTGCACGTGATCGCTTCTACACCATAGTCATTGGTTGTGGTGTTTGTCTCTTGATGAGTTTTTTGGCATTTCCAAATTGGTCGGGGGAAGACCTACATAATTCGACAGCTTCCAAACTTGAAGGCCTAGCCAAATCTTTAGAAGCTTGTGTCAATGAATTTTTTTATGGAGAAATACATGTTTCTGATGGTGATGTAGAATCATCTGAAGATATAATATATGAAGGTTATAATGCAGTTTTGGATTCCAAATCCACTGATGAAACATTGGTAAGTATTGGAACTGTTCTTCGTCAATTCGGGTATACGTTGGTAGCCCTACATGGCTGTTTGAGAACAGAAATTCAGACACCGGGATCAGTTCGAGTACTATTCCAGGATCCTTGCATAAGGCTAGCAGCAGAGGTATCAAAAGTGCTAATAGAACTTGCCAACAGCATAAAGAGTCGACGCCATTGCTCACCAGAAATATTTTCTGATCATCTTCATGAAGCACTGAAAGATCTCGATACTGCCATAAAATCTCAGCCACGACTCTTCTTAGGATCTAATGACAACCAATCAAATAACATTGTTGCGGCCACCATAGCTGCTACACAAGGAACAACAAGACAGACGTCAAAAAAGGAAGTGGTGAGAAGCCAGATGAGTAAAATGGCTATTACTAGTCTTGAGTTTTCTGAAGCATTGCCTTTTGCTGCTTTTGCTTCTTTGCTTTTGGAAACGGTGGCGAAACTCGACTTAATAATTGATGAAGTTGAAGAACTTGGGAGGTTAGCGTGCTTCAAAGAGTATACACCTGGTGATGAATTTTCTGTTAGTTCTGAGAAACCAAGAGATGATGGTTTGGAGAACAATTTACCTTCTCATGGGGGAGAATGA
Protein sequence

>MsG0380013490.01.T01

MKKRFHIFVERLKGFPCLAWKTTWKVGCDDPRRVIHAFKVGSSLTLVSLLYLLEPLYKGIGQHASWAVITVVVVFEFTAGETLCKGLNRAYGTLLAGVLAFLLDFVSNSFGQIFQAVFIGVAVFVIGSAATYMRFIPCIQKNYDYGVVIFLLTFNLLISSYRVDHHVLKIARDRFYTIVIGCGVCLLMSFLAFPNWSGEDLHNSTASKLEGLAKSLEACVNEFFYGEIHVSDGDVESSEDIIYEGYNAVLDSKSTDETLVSIGTVLRQFGYTLVALHGCLRTEIQTPGSVRVLFQDPCIRLAAEVSKVLIELANSIKSRRHCSPEIFSDHLHEALKDLDTAIKSQPRLFLGSNDNQSNNIVAATIAATQGTTRQTSKKEVVRSQMSKMAITSLEFSEALPFAAFASLLLETVAKLDLIIDEVEELGRLACFKEYTPGDEFSVSSEKPRDDGLENNLPSHGGE*