AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014134.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014134.01.T01 MTR_3g051270 93.781 402 16 2 1 402 1 393 0.0 769
MsG0380014134.01.T01 MTR_3g051270 91.542 402 16 2 1 402 1 384 0.0 746
MsG0380014134.01.T01 MTR_3g051270 87.811 402 15 3 1 402 1 368 0.0 704
MsG0380014134.01.T01 MTR_2g099480 36.559 93 54 1 26 113 39 131 8.12e-14 73.6
MsG0380014134.01.T01 MTR_8g019560 39.773 88 48 1 26 108 57 144 1.85e-12 69.3
MsG0380014134.01.T01 MTR_8g019560 39.773 88 48 1 26 108 59 146 1.85e-12 69.3
MsG0380014134.01.T01 MTR_8g019560 39.773 88 48 1 26 108 89 176 2.41e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014134.01.T01 AT4G26990 35.142 387 207 12 27 402 22 375 4.06e-45 162
MsG0380014134.01.T01 AT5G54920 55.670 97 42 1 24 120 23 118 3.35e-26 110
MsG0380014134.01.T01 AT5G54920 38.000 150 64 5 245 387 282 409 5.26e-14 73.9
MsG0380014134.01.T01 AT5G54920 55.670 97 42 1 24 120 23 118 4.14e-26 110
MsG0380014134.01.T01 AT5G54920 38.000 150 64 5 245 387 287 414 5.65e-14 73.9
MsG0380014134.01.T01 AT3G14010 32.540 126 79 3 22 141 50 175 1.52e-13 72.8
MsG0380014134.01.T01 AT3G14010 32.540 126 79 3 22 141 42 167 1.61e-13 72.8
MsG0380014134.01.T01 AT3G14010 32.540 126 79 3 22 141 42 167 1.61e-13 72.8
MsG0380014134.01.T01 AT3G14010 32.540 126 79 3 22 141 42 167 1.61e-13 72.8
MsG0380014134.01.T01 AT3G14010 32.540 126 79 3 22 141 42 167 2.54e-13 72.0
MsG0380014134.01.T01 AT1G54170 41.463 82 47 1 28 108 52 133 2.63e-11 65.9

Find 101 sgRNAs with CRISPR-Local

Find 380 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATTTACCTTGGCATTTC+TGG 0.098385 3:-50244172 None:intergenic
ATTAATCCTTCTTGTAATTT+AGG 0.125777 3:+50239084 None:intergenic
ACTGTGGCCCTTTCCCTTCT+TGG 0.139919 3:-50240459 None:intergenic
TCTTATATTATTCTTGATCT+TGG 0.253967 3:-50239128 None:intergenic
AAAAGACGGGGAGAAAATTT+TGG 0.286099 3:-50244923 None:intergenic
TTTGCAGGTGGAGAGCTATT+TGG 0.298374 3:-50245003 None:intergenic
AAAGATGGTTCTGTATATTC+TGG 0.315916 3:+50239355 MsG0380014134.01.T01:CDS
CTTTCCCTTCTTGGTCATCC+TGG 0.330841 3:-50240450 None:intergenic
TTTGCAGGTGGAGAGCTATT+TGG 0.334338 3:-50245039 None:intergenic
GGCAGGTAAACCATGTTTGC+AGG 0.335733 3:-50245018 None:intergenic
GGCAGGTAAACCATGTTTGC+AGG 0.335733 3:-50245054 None:intergenic
CTTATATTATTCTTGATCTT+GGG 0.338701 3:-50239127 None:intergenic
GCTTCTACTGAATCAAATTT+CGG 0.340165 3:+50239391 MsG0380014134.01.T01:CDS
GGTAATGGAGGAGAGCTATT+TGG 0.343934 3:-50245075 None:intergenic
GCAATCACTATGAGTATCAT+TGG 0.355991 3:+50239310 MsG0380014134.01.T01:CDS
AACTTCTGCTTGCAGTCATC+AGG 0.356985 3:-50243410 None:intergenic
ACGGTTGAAGTTGCTGAATT+AGG 0.363684 3:-50244952 None:intergenic
CCATACTGTGAAGCCTTAAC+TGG 0.370658 3:-50245156 None:intergenic
TGAATAGTTGCAACAGGTAA+TGG 0.388384 3:-50245090 None:intergenic
CCTTTCACTACCCTGATCAT+TGG 0.394133 3:-50244031 None:intergenic
TAAACCATGTTTGCAGTTGT+TGG 0.404357 3:-50244976 None:intergenic
CACTTTCATGGCCGGAATGA+AGG 0.413380 3:-50243554 None:intergenic
TAGTGTGATCCTCTTTCAAC+AGG 0.417155 3:-50239243 None:intergenic
TCGACCTTCTGTGCCAGTTA+AGG 0.419997 3:+50245143 MsG0380014134.01.T01:CDS
CCAGTTAAGGCTTCACAGTA+TGG 0.422983 3:+50245156 MsG0380014134.01.T01:CDS
ATCCTTCTTGTAATTTAGGT+TGG 0.424549 3:+50239088 None:intergenic
TAATGTTGGAAACGAGGCTT+TGG 0.424920 3:+50240481 MsG0380014134.01.T01:CDS
TCTTGTTGAATAGTTGCAAC+AGG 0.425162 3:-50245096 None:intergenic
AGCTGATAAAGCCAATGATC+AGG 0.427418 3:+50244020 MsG0380014134.01.T01:CDS
TCATTCGATGGATGCAGAAC+AGG 0.436007 3:+50240751 MsG0380014134.01.T01:CDS
AAGATTCAAAGCCTTCATTC+CGG 0.436470 3:+50243543 MsG0380014134.01.T01:CDS
GGAAATCCAACTCACTTTCA+TGG 0.438660 3:-50243566 None:intergenic
GAAATCTAAAATTAGATTGA+AGG 0.442995 3:-50245497 None:intergenic
AATTTGACGGTCGGAAATCC+TGG 0.448040 3:+50245180 MsG0380014134.01.T01:CDS
CTCATTGAGATCTTCACTTA+GGG 0.453260 3:-50244088 None:intergenic
TCTTTAACATGAACATCAAC+AGG 0.455843 3:-50239337 None:intergenic
GAGTGTAATGTGCAGCATAC+TGG 0.459341 3:-50245403 None:intergenic
CCTCATTGAGATCTTCACTT+AGG 0.465840 3:-50244089 None:intergenic
CTTGTTGTTTGCAAATAAGC+AGG 0.468322 3:-50245440 None:intergenic
GGTGTTGGTGGAAATATAAC+TGG 0.474384 3:+50240683 MsG0380014134.01.T01:CDS
CGTGCCAACAACTGCAAACA+TGG 0.476707 3:+50244972 MsG0380014134.01.T01:CDS
ATTATTTGGCGACAGATTGT+TGG 0.485669 3:+50245356 MsG0380014134.01.T01:intron
TTCCGGCCATGAAAGTGAGT+TGG 0.493851 3:+50243560 MsG0380014134.01.T01:CDS
CAGAACAGGTTAATCAATCA+AGG 0.496832 3:+50240765 MsG0380014134.01.T01:CDS
TAAGCAGGTTCAGATAAAAC+AGG 0.497918 3:-50245425 None:intergenic
GTTGATGTTCATGTTAAAGA+TGG 0.497939 3:+50239340 MsG0380014134.01.T01:CDS
CTGGAGATAACAACTCCAAC+GGG 0.500447 3:+50243384 MsG0380014134.01.T01:CDS
GAAAATTGAGAACCACTGCC+AGG 0.502733 3:-50245198 None:intergenic
GCAACTATTCAACAAGAAGC+TGG 0.503422 3:+50245102 MsG0380014134.01.T01:CDS
CTGGTACAATCTGTACCCCT+TGG 0.512262 3:-50244153 None:intergenic
TTCTGCTGATAGTCATTCGA+TGG 0.515820 3:+50240739 MsG0380014134.01.T01:CDS
ATCCAACTCACTTTCATGGC+CGG 0.516501 3:-50243562 None:intergenic
TAGCTCTCCACCTGCAAACA+TGG 0.525516 3:+50245008 MsG0380014134.01.T01:CDS
TAGCTCTCCACCTGCAAACA+TGG 0.525516 3:+50245044 MsG0380014134.01.T01:CDS
TATCTTTCTGTACTTACCGC+AGG 0.527803 3:-50245467 None:intergenic
AGGATGACCAAGAAGGGAAA+GGG 0.530876 3:+50240452 MsG0380014134.01.T01:CDS
GGAAAGGGCCACAGTAATGT+TGG 0.532813 3:+50240467 MsG0380014134.01.T01:CDS
AATTAGGATGGACAAAAGAC+GGG 0.536889 3:-50244936 None:intergenic
CAAGCCAGGATGACCAAGAA+GGG 0.541510 3:+50240446 MsG0380014134.01.T01:CDS
TTTACATGAAACAGAGATCA+GGG 0.541855 3:-50243587 None:intergenic
TCTCGTGCAAGTTGTTGCTA+AGG 0.543098 3:+50240532 MsG0380014134.01.T01:CDS
AAATATAACTGGTGATTATG+AGG 0.545568 3:+50240694 MsG0380014134.01.T01:CDS
TTCACAGTATGGTAATTTGA+CGG 0.546261 3:+50245167 MsG0380014134.01.T01:CDS
CTTCCTGCGGATGGTGTTGG+TGG 0.547917 3:+50240671 MsG0380014134.01.T01:CDS
TAGTGAAAGGTCTACTTCAC+CGG 0.548745 3:+50244044 MsG0380014134.01.T01:CDS
CAGGTTGTGTCCTTGTCAGT+TGG 0.549077 3:-50245379 None:intergenic
ACGGTCGGAAATCCTGGCAG+TGG 0.549325 3:+50245186 MsG0380014134.01.T01:CDS
CAGGTGGAGAGCTATTTGGC+AGG 0.551079 3:-50245035 None:intergenic
TTGAAGTTGCTGAATTAGGA+TGG 0.553824 3:-50244948 None:intergenic
ATTGTAGTTGATGCATGTCT+TGG 0.558902 3:+50243988 MsG0380014134.01.T01:intron
GGAGTAACGCTTCCTGCGGA+TGG 0.559418 3:+50240662 MsG0380014134.01.T01:CDS
ATTGAGATCTTCACTTAGGG+TGG 0.559804 3:-50244085 None:intergenic
GAATTAGGATGGACAAAAGA+CGG 0.560805 3:-50244937 None:intergenic
ACGCTTCCTGCGGATGGTGT+TGG 0.563729 3:+50240668 MsG0380014134.01.T01:CDS
GCAAGCCAGGATGACCAAGA+AGG 0.563977 3:+50240445 MsG0380014134.01.T01:CDS
GCTGATAAAGCCAATGATCA+GGG 0.567813 3:+50244021 MsG0380014134.01.T01:CDS
CAGTATGGTAATTTGACGGT+CGG 0.573212 3:+50245171 MsG0380014134.01.T01:CDS
CAGGATGACCAAGAAGGGAA+AGG 0.575238 3:+50240451 MsG0380014134.01.T01:CDS
GCAGTCATCAGGTTTCCCGT+TGG 0.582739 3:-50243399 None:intergenic
ATGGAGGAGAGCTATTTGGC+AGG 0.603399 3:-50245071 None:intergenic
TAATGTGCAGCATACTGGAC+AGG 0.605802 3:-50245398 None:intergenic
GAAGCCTTAACTGGCACAGA+AGG 0.607114 3:-50245147 None:intergenic
AGATTGTTGGCCAACTGACA+AGG 0.610879 3:+50245369 MsG0380014134.01.T01:intron
CCAATGATCAGGGTAGTGAA+AGG 0.612822 3:+50244031 MsG0380014134.01.T01:CDS
CATGTTTGCAGTTGTTGGCA+CGG 0.620048 3:-50244971 None:intergenic
GCTGGAGATAACAACTCCAA+CGG 0.621760 3:+50243383 MsG0380014134.01.T01:CDS
TGGCTTTATCAGCTTCAACA+CGG 0.632516 3:-50244011 None:intergenic
GGCTTTGGTAGATACACTAG+TGG 0.635944 3:+50240496 MsG0380014134.01.T01:CDS
TTTCCACCAACACCATCCGC+AGG 0.642982 3:-50240674 None:intergenic
CCACAGTAATGTTGGAAACG+AGG 0.647305 3:+50240475 MsG0380014134.01.T01:CDS
AGATTGTACCAGAAATGCCA+AGG 0.654294 3:+50244164 MsG0380014134.01.T01:CDS
ATAGTTGCAACAGGTAATGG+AGG 0.655182 3:-50245087 None:intergenic
GAATGTGTAGAAGTAGTGTC+CGG 0.664282 3:-50244063 None:intergenic
GCAAACAACAAGCTCTCCTG+CGG 0.664509 3:+50245451 MsG0380014134.01.T01:CDS
GTAGGGAGTAACGCTTCCTG+CGG 0.668676 3:+50240658 MsG0380014134.01.T01:intron
AGGTAAACCATGTTTGCAGG+TGG 0.674402 3:-50245015 None:intergenic
AGGTAAACCATGTTTGCAGG+TGG 0.674402 3:-50245051 None:intergenic
CCTCGTTTCCAACATTACTG+TGG 0.694545 3:-50240475 None:intergenic
TGAGGAAGCAGTTACACACG+AGG 0.710029 3:+50240712 MsG0380014134.01.T01:CDS
CCTAAGTGAAGATCTCAATG+AGG 0.718343 3:+50244089 MsG0380014134.01.T01:CDS
ATTAGGATGGACAAAAGACG+GGG 0.738558 3:-50244935 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATATTATATATTATAT+TGG + Chr3:50242400-50242419 MsG0380014134.01.T01:intron 0.0%
!! ATTATATTATATATTATATT+GGG + Chr3:50242401-50242420 MsG0380014134.01.T01:intron 0.0%
!! TAATATAATTAAATAGAATG+AGG - Chr3:50242390-50242409 None:intergenic 10.0%
!!! ATTTATATTTTTACTGAATT+AGG - Chr3:50240132-50240151 None:intergenic 10.0%
!! AAGAAATGAATGAAAAAAAA+AGG - Chr3:50239421-50239440 None:intergenic 15.0%
!! AGAAAGATAAAAAATAATGT+AGG + Chr3:50241435-50241454 MsG0380014134.01.T01:intron 15.0%
!! ATACCAAACAAAAATTAAAA+AGG - Chr3:50240341-50240360 None:intergenic 15.0%
!! CAAATTTCCTAAAAAAAAAA+AGG - Chr3:50239446-50239465 None:intergenic 15.0%
!!! AAATTTTCCATTTTTCTTAT+CGG + Chr3:50240192-50240211 MsG0380014134.01.T01:intron 15.0%
!!! ACATATTATCCTTATTTATA+GGG - Chr3:50244610-50244629 None:intergenic 15.0%
!!! ATTATCATTTTTGGATTATT+TGG + Chr3:50245342-50245361 MsG0380014134.01.T01:intron 15.0%
!!! GTGAAAAAATTTCATTTTTT+TGG + Chr3:50239507-50239526 MsG0380014134.01.T01:intron 15.0%
!!! TAACCTTTTTAATTTTTGTT+TGG + Chr3:50240335-50240354 MsG0380014134.01.T01:intron 15.0%
!!! TACATATTATCCTTATTTAT+AGG - Chr3:50244611-50244630 None:intergenic 15.0%
!!! TTCTTAACCTTTTTTTTTTT+AGG + Chr3:50239436-50239455 MsG0380014134.01.T01:intron 15.0%
!!! TTTACATTATTTTAACAAAC+TGG - Chr3:50242058-50242077 None:intergenic 15.0%
!! AAATTTCAGTGTTATCAATT+GGG - Chr3:50241818-50241837 None:intergenic 20.0%
!! AACATAATAACAAATTAACG+TGG - Chr3:50240841-50240860 None:intergenic 20.0%
!! ACTATTAATATGTACATGAT+AGG - Chr3:50242585-50242604 None:intergenic 20.0%
!! AGAATATAACTATGTTCTTA+AGG + Chr3:50240612-50240631 MsG0380014134.01.T01:intron 20.0%
!! ATAATTAAATAGAATGAGGA+TGG - Chr3:50242386-50242405 None:intergenic 20.0%
!! ATAGTATATATACTAGAACA+GGG + Chr3:50242236-50242255 MsG0380014134.01.T01:intron 20.0%
!! ATCATGATATCACAAAAAAA+AGG + Chr3:50242082-50242101 MsG0380014134.01.T01:intron 20.0%
!! ATTAAAAAGGTTAACAATCT+AGG - Chr3:50240328-50240347 None:intergenic 20.0%
!! ATTAATCAAGTAAATGGAAA+TGG - Chr3:50239878-50239897 None:intergenic 20.0%
!! ATTATACATCTAACATCATT+AGG - Chr3:50241879-50241898 None:intergenic 20.0%
!! CACACTTAATATTTCATTTA+CGG - Chr3:50242856-50242875 None:intergenic 20.0%
!! CTATTAATATGTACATGATA+GGG - Chr3:50242584-50242603 None:intergenic 20.0%
!! CTCGTAATCTTAAATAAATA+AGG - Chr3:50244579-50244598 None:intergenic 20.0%
!! CTTATATTATTCTTGATCTT+GGG - Chr3:50239130-50239149 None:intergenic 20.0%
!! TAAAAACTATCAACTCTATT+AGG - Chr3:50239628-50239647 None:intergenic 20.0%
!! TAAATTTCAGTGTTATCAAT+TGG - Chr3:50241819-50241838 None:intergenic 20.0%
!! TATCTATTACTGTTGAAATT+TGG - Chr3:50243116-50243135 None:intergenic 20.0%
!! TATTAATATGTACATGATAG+GGG - Chr3:50242583-50242602 None:intergenic 20.0%
!! TCATAAACATTATTAATAGG+AGG + Chr3:50242446-50242465 MsG0380014134.01.T01:intron 20.0%
!! TCCTATTAATAATGTTTATG+AGG - Chr3:50242447-50242466 None:intergenic 20.0%
!! TCTTATATTATTCTTGATCT+TGG - Chr3:50239131-50239150 None:intergenic 20.0%
!! TGTTATCTATGAAAATCTTA+GGG + Chr3:50239672-50239691 MsG0380014134.01.T01:intron 20.0%
!! TTAACAAAAACAAAGTATGT+TGG + Chr3:50243438-50243457 MsG0380014134.01.T01:intron 20.0%
!! TTAACACATTGTAAGATTTA+GGG + Chr3:50242009-50242028 MsG0380014134.01.T01:intron 20.0%
!! TTCAATTTGTGAATAGATAA+AGG - Chr3:50241324-50241343 None:intergenic 20.0%
!! TTGATAGAACATGAATATAT+GGG + Chr3:50242203-50242222 MsG0380014134.01.T01:intron 20.0%
!! TTGTTATCTATGAAAATCTT+AGG + Chr3:50239671-50239690 MsG0380014134.01.T01:intron 20.0%
!! TTTAATATAAGAATCCTTAG+TGG + Chr3:50243248-50243267 MsG0380014134.01.T01:intron 20.0%
!!! ACAAATTTGTTAATACATAC+AGG - Chr3:50245228-50245247 None:intergenic 20.0%
!!! ATGGAAAATTTTAAAAACGA+AGG - Chr3:50240183-50240202 None:intergenic 20.0%
!!! ATTGATTCATTTGTAATTGT+TGG + Chr3:50242889-50242908 MsG0380014134.01.T01:intron 20.0%
!!! CTTTCACTTTGTAATTTTTA+TGG - Chr3:50242141-50242160 None:intergenic 20.0%
!!! GACATTATTTTTTTTTCCTT+GGG + Chr3:50243332-50243351 MsG0380014134.01.T01:intron 20.0%
!!! TAAAAAAGTATACACTTCTT+AGG + Chr3:50245311-50245330 MsG0380014134.01.T01:intron 20.0%
!!! TAATAGAGTTGATAGTTTTT+AGG + Chr3:50239627-50239646 MsG0380014134.01.T01:intron 20.0%
!!! TAGAAACTATGTTTTTTCTT+TGG + Chr3:50242546-50242565 MsG0380014134.01.T01:intron 20.0%
!!! TGACATTATTTTTTTTTCCT+TGG + Chr3:50243331-50243350 MsG0380014134.01.T01:intron 20.0%
!!! TTAAATGGATTTATTTACCT+TGG - Chr3:50244184-50244203 None:intergenic 20.0%
!!! TTTTTAACTGAAAGTCATTT+TGG + Chr3:50244317-50244336 MsG0380014134.01.T01:intron 20.0%
!!! TTTTTTTACACAATGAAGAT+TGG + Chr3:50241539-50241558 MsG0380014134.01.T01:intron 20.0%
! AAATATAACTGGTGATTATG+AGG + Chr3:50240694-50240713 MsG0380014134.01.T01:CDS 25.0%
! AAATGAAATATTAAGTGTGG+TGG + Chr3:50242857-50242876 MsG0380014134.01.T01:intron 25.0%
! AATTTCAGTGTTATCAATTG+GGG - Chr3:50241817-50241836 None:intergenic 25.0%
! AGTACATGAGAATTGAATAA+GGG - Chr3:50243965-50243984 None:intergenic 25.0%
! ATCAAATTCATTCAAATGCA+TGG + Chr3:50240796-50240815 MsG0380014134.01.T01:intron 25.0%
! ATGAGAATAGCATTAGTAAT+AGG + Chr3:50240293-50240312 MsG0380014134.01.T01:intron 25.0%
! ATGTATTTCGATTTACTCAT+TGG + Chr3:50241357-50241376 MsG0380014134.01.T01:intron 25.0%
! ATTTACTCAATAGCTCAATT+GGG + Chr3:50239482-50239501 MsG0380014134.01.T01:intron 25.0%
! CGGTTAATTAGAAAAAATAG+AGG - Chr3:50243833-50243852 None:intergenic 25.0%
! CGTAAATGAAATATTAAGTG+TGG + Chr3:50242854-50242873 MsG0380014134.01.T01:intron 25.0%
! GAGAGAATTCAATTATTATG+AGG - Chr3:50243899-50243918 None:intergenic 25.0%
! GATAGTATATATACTAGAAC+AGG + Chr3:50242235-50242254 MsG0380014134.01.T01:intron 25.0%
! GCCTCATAAACATTATTAAT+AGG + Chr3:50242443-50242462 MsG0380014134.01.T01:intron 25.0%
! GTTAACACATTGTAAGATTT+AGG + Chr3:50242008-50242027 MsG0380014134.01.T01:intron 25.0%
! TAAAAAAGATGTGTCGTATA+GGG - Chr3:50244303-50244322 None:intergenic 25.0%
! TAACTAATTGGAATATCAAG+TGG + Chr3:50241470-50241489 MsG0380014134.01.T01:intron 25.0%
! TAACTATGTTCTTAAGGTTA+AGG + Chr3:50240618-50240637 MsG0380014134.01.T01:intron 25.0%
! TACTATCAAACTATCATCAA+TGG + Chr3:50244647-50244666 MsG0380014134.01.T01:intron 25.0%
! TATTCTAAGTTTATAGTCGA+TGG - Chr3:50244737-50244756 None:intergenic 25.0%
! TATTTACTCAATAGCTCAAT+TGG + Chr3:50239481-50239500 MsG0380014134.01.T01:intron 25.0%
! TCAGAATATTTCATACTGAA+GGG - Chr3:50241299-50241318 None:intergenic 25.0%
! TCTGTATATACTTTGCAAAA+GGG - Chr3:50243766-50243785 None:intergenic 25.0%
! TGTATGTTGAAAAATGTGTA+AGG + Chr3:50243703-50243722 MsG0380014134.01.T01:intron 25.0%
! TTAAAAAAGATGTGTCGTAT+AGG - Chr3:50244304-50244323 None:intergenic 25.0%
! TTCAGAATATTTCATACTGA+AGG - Chr3:50241300-50241319 None:intergenic 25.0%
! TTCATTGTGTAAAAAAATGC+AGG - Chr3:50241536-50241555 None:intergenic 25.0%
! TTCTGTATATACTTTGCAAA+AGG - Chr3:50243767-50243786 None:intergenic 25.0%
! TTGAAATTTCTCAATATGTC+TGG + Chr3:50241928-50241947 MsG0380014134.01.T01:intron 25.0%
!! AATTGTGTGTAATTTTCATC+TGG + Chr3:50239564-50239583 MsG0380014134.01.T01:intron 25.0%
!! ACAGATTATACGTATTTTTC+TGG - Chr3:50241208-50241227 None:intergenic 25.0%
!! ATTGTGTGTAATTTTCATCT+GGG + Chr3:50239565-50239584 MsG0380014134.01.T01:intron 25.0%
!! GCACTCATTATTATCATTTT+TGG + Chr3:50245333-50245352 MsG0380014134.01.T01:intron 25.0%
!! GTTGATAGAACATGAATATA+TGG + Chr3:50242202-50242221 MsG0380014134.01.T01:intron 25.0%
!! TAAGTGCTAATTGTTTGTTA+TGG - Chr3:50243277-50243296 None:intergenic 25.0%
!! TATCGCTTAACATTTTGAAT+TGG + Chr3:50244400-50244419 MsG0380014134.01.T01:intron 25.0%
!! TCTTTGGATTATTTCCTTTT+TGG + Chr3:50243162-50243181 MsG0380014134.01.T01:intron 25.0%
!! TTTTTACTGTATTAACTACC+AGG - Chr3:50239902-50239921 None:intergenic 25.0%
!!! AAGTACATATTCTGAAGTAT+CGG - Chr3:50239770-50239789 None:intergenic 25.0%
!!! AGCAATGAGTTTTAGATAAA+AGG - Chr3:50244699-50244718 None:intergenic 25.0%
!!! ATATTTTTACTGAATTAGGC+TGG - Chr3:50240128-50240147 None:intergenic 25.0%
!!! CTTCTAAGTTCTAACTATTT+TGG + Chr3:50243645-50243664 MsG0380014134.01.T01:intron 25.0%
!!! CTTGATTTTGATGAAAATAG+TGG + Chr3:50239984-50240003 MsG0380014134.01.T01:intron 25.0%
!!! GATTTTTCAATGAATTTTGC+TGG - Chr3:50244129-50244148 None:intergenic 25.0%
!!! TCAATCATCAATTTTGAGAT+GGG + Chr3:50239205-50239224 MsG0380014134.01.T01:exon 25.0%
!!! TTCAATCATCAATTTTGAGA+TGG + Chr3:50239204-50239223 MsG0380014134.01.T01:exon 25.0%
!!! TTGTTGTTTTGACGTAAAAA+TGG + Chr3:50242613-50242632 MsG0380014134.01.T01:intron 25.0%
AAAAAAGAACCTGTTGAAAG+AGG + Chr3:50239234-50239253 MsG0380014134.01.T01:CDS 30.0%
AAAAACGAGAATGGTTATGA+TGG - Chr3:50239160-50239179 None:intergenic 30.0%
AAAGAAAGTCACAATGAGAA+AGG - Chr3:50244879-50244898 None:intergenic 30.0%
AAAGTTGTTAAGAGTCATGT+AGG + Chr3:50242157-50242176 MsG0380014134.01.T01:intron 30.0%
AAATATGGGTACTCCTAAAA+TGG + Chr3:50239797-50239816 MsG0380014134.01.T01:intron 30.0%
AACCATACATTACTAAAGAC+AGG - Chr3:50241991-50242010 None:intergenic 30.0%
AACTTAAAAATTGCATGCTG+AGG - Chr3:50240978-50240997 None:intergenic 30.0%
ACCACTGTTACATAACTAAT+TGG + Chr3:50241458-50241477 MsG0380014134.01.T01:intron 30.0%
ACTATAGCTAACTGACTATT+AGG - Chr3:50244381-50244400 None:intergenic 30.0%
AGAACATGAATATATGGGTA+AGG + Chr3:50242208-50242227 MsG0380014134.01.T01:intron 30.0%
AGGCGTTAATGTAAAAATGT+TGG - Chr3:50243813-50243832 None:intergenic 30.0%
AGTCCTGATAAAAATGATGT+AGG + Chr3:50244230-50244249 MsG0380014134.01.T01:intron 30.0%
ATAAAAATGATGTAGGTGGA+AGG + Chr3:50244237-50244256 MsG0380014134.01.T01:intron 30.0%
ATTCTCCGTGTATTAGAAAA+TGG - Chr3:50241085-50241104 None:intergenic 30.0%
ATTGTTGGAAATTCTGATTG+CGG + Chr3:50242904-50242923 MsG0380014134.01.T01:intron 30.0%
CAAACTGGTTGTAAATATGT+TGG - Chr3:50242043-50242062 None:intergenic 30.0%
CATGAGAAGAGTTTATAAAG+AGG + Chr3:50243043-50243062 MsG0380014134.01.T01:intron 30.0%
CCAGGAATTAATCAAGTAAA+TGG - Chr3:50239884-50239903 None:intergenic 30.0%
CCATCAAAATTCAAAAGTGA+AGG + Chr3:50242798-50242817 MsG0380014134.01.T01:intron 30.0%
CCATTTACTTGATTAATTCC+TGG + Chr3:50239881-50239900 MsG0380014134.01.T01:intron 30.0%
CTAAACATGCAACAAAGTAA+GGG - Chr3:50240412-50240431 None:intergenic 30.0%
CTTACTTTGTTGCATGTTTA+GGG + Chr3:50240411-50240430 MsG0380014134.01.T01:intron 30.0%
CTTGTCTGTCAATAAAAAGT+TGG - Chr3:50243364-50243383 None:intergenic 30.0%
GAACATGAATATATGGGTAA+GGG + Chr3:50242209-50242228 MsG0380014134.01.T01:intron 30.0%
GAATCAATAGTGTGCTTTAT+TGG + Chr3:50242510-50242529 MsG0380014134.01.T01:intron 30.0%
GAGTACATGAGAATTGAATA+AGG - Chr3:50243966-50243985 None:intergenic 30.0%
GCTTCTACTGAATCAAATTT+CGG + Chr3:50239391-50239410 MsG0380014134.01.T01:CDS 30.0%
GTCTTGTATCCCTATAAATA+AGG + Chr3:50244598-50244617 MsG0380014134.01.T01:intron 30.0%
GTTGATGTTCATGTTAAAGA+TGG + Chr3:50239340-50239359 MsG0380014134.01.T01:CDS 30.0%
TAATAATGTTTATGAGGCAG+AGG - Chr3:50242441-50242460 None:intergenic 30.0%
TACATTGTTAGTTGCTAGTT+GGG + Chr3:50241847-50241866 MsG0380014134.01.T01:intron 30.0%
TATAATGCACCTTCAATCTA+AGG + Chr3:50245488-50245507 MsG0380014134.01.T01:CDS 30.0%
TCAAAAGCTAGAAACACAAT+TGG - Chr3:50240916-50240935 None:intergenic 30.0%
TCAAGTAAATGGAAATGGTT+CGG - Chr3:50239873-50239892 None:intergenic 30.0%
TCAATTTGATGTCAACTCTT+TGG + Chr3:50243146-50243165 MsG0380014134.01.T01:intron 30.0%
TCCAATTAGTTATGTAACAG+TGG - Chr3:50241462-50241481 None:intergenic 30.0%
TCCTACTGATAGCAAATTTA+AGG + Chr3:50242768-50242787 MsG0380014134.01.T01:intron 30.0%
TCTTTAACATGAACATCAAC+AGG - Chr3:50239340-50239359 None:intergenic 30.0%
TGTATAACAGATTCAAGTGT+GGG - Chr3:50240369-50240388 None:intergenic 30.0%
TGTCAAATTCAATGCTTCTT+AGG - Chr3:50240877-50240896 None:intergenic 30.0%
TTAAAAACTGTGCTCCAAAA+AGG - Chr3:50243179-50243198 None:intergenic 30.0%
TTACATTGTTAGTTGCTAGT+TGG + Chr3:50241846-50241865 MsG0380014134.01.T01:intron 30.0%
TTACTTCAGACATGAATCAA+AGG - Chr3:50241253-50241272 None:intergenic 30.0%
TTCACAGTATGGTAATTTGA+CGG + Chr3:50245167-50245186 MsG0380014134.01.T01:CDS 30.0%
TTCATGTCTCTTTGATTAGT+AGG + Chr3:50245283-50245302 MsG0380014134.01.T01:intron 30.0%
TTCTCATTGTGACTTTCTTT+AGG + Chr3:50244879-50244898 MsG0380014134.01.T01:intron 30.0%
TTGTATAACAGATTCAAGTG+TGG - Chr3:50240370-50240389 None:intergenic 30.0%
TTTACATGAAACAGAGATCA+GGG - Chr3:50243590-50243609 None:intergenic 30.0%
TTTATTTACCTTGGCATTTC+TGG - Chr3:50244175-50244194 None:intergenic 30.0%
! AAAAGTTGTTTCAAGCTTAC+GGG + Chr3:50242478-50242497 MsG0380014134.01.T01:intron 30.0%
! AAAGATGGTTCTGTATATTC+TGG + Chr3:50239355-50239374 MsG0380014134.01.T01:CDS 30.0%
! ATCTGTTGATGGAAGTTAAA+TGG - Chr3:50244199-50244218 None:intergenic 30.0%
! CAAAAGTTGTTTCAAGCTTA+CGG + Chr3:50242477-50242496 MsG0380014134.01.T01:intron 30.0%
! GTAGACACTATTGATTGAAA+TGG + Chr3:50243617-50243636 MsG0380014134.01.T01:intron 30.0%
! TACATGTGATTTTGTGTGTA+GGG + Chr3:50240641-50240660 MsG0380014134.01.T01:intron 30.0%
! TATATTGGGCTTTGTCTATT+GGG + Chr3:50242415-50242434 MsG0380014134.01.T01:intron 30.0%
! TTATATTGGGCTTTGTCTAT+TGG + Chr3:50242414-50242433 MsG0380014134.01.T01:intron 30.0%
! TTGTGTGTAATTTTCATCTG+GGG + Chr3:50239566-50239585 MsG0380014134.01.T01:intron 30.0%
! TTTTACATGAAACAGAGATC+AGG - Chr3:50243591-50243610 None:intergenic 30.0%
! TTTTATCTCTTCGAGAATGT+TGG + Chr3:50241015-50241034 MsG0380014134.01.T01:intron 30.0%
!! AAATCTCTGAAGCATGATAA+TGG + Chr3:50240028-50240047 MsG0380014134.01.T01:intron 30.0%
!! ATGTACTTGTCTCTGAAATA+TGG + Chr3:50239782-50239801 MsG0380014134.01.T01:intron 30.0%
!! CCTTCACTTTTGAATTTTGA+TGG - Chr3:50242801-50242820 None:intergenic 30.0%
!! GATTTTGATGAAAATAGTGG+AGG + Chr3:50239987-50240006 MsG0380014134.01.T01:intron 30.0%
!! TCCTTAAATTTGCTATCAGT+AGG - Chr3:50242772-50242791 None:intergenic 30.0%
!! TGTACTTGTCTCTGAAATAT+GGG + Chr3:50239783-50239802 MsG0380014134.01.T01:intron 30.0%
!! TTAAATTTGCTATCAGTAGG+AGG - Chr3:50242769-50242788 None:intergenic 30.0%
!!! TTCTGCCATTTTCTAATACA+CGG + Chr3:50241077-50241096 MsG0380014134.01.T01:intron 30.0%
!!! TTTTTGATTTACGCAACAGT+AGG + Chr3:50244784-50244803 MsG0380014134.01.T01:intron 30.0%
AAACAAAGTATGTTGGCACT+TGG + Chr3:50243445-50243464 MsG0380014134.01.T01:intron 35.0%
AACAAGTTCCTATGATGCAT+AGG - Chr3:50240244-50240263 None:intergenic 35.0%
AACTGGCAATTGCAATTCTA+AGG - Chr3:50241614-50241633 None:intergenic 35.0%
AAGATTCAAAGCCTTCATTC+CGG + Chr3:50243543-50243562 MsG0380014134.01.T01:CDS 35.0%
AATTAGGATGGACAAAAGAC+GGG - Chr3:50244939-50244958 None:intergenic 35.0%
AATTGGAATATCAAGTGGCT+TGG + Chr3:50241475-50241494 MsG0380014134.01.T01:intron 35.0%
ACATTGTTAGTTGCTAGTTG+GGG + Chr3:50241848-50241867 MsG0380014134.01.T01:intron 35.0%
ACTTGAGTTTCAACAATGCT+AGG + Chr3:50241163-50241182 MsG0380014134.01.T01:intron 35.0%
AGATGTTCTAATCTTGTGCT+AGG - Chr3:50243924-50243943 None:intergenic 35.0%
ATGAATATATGGGTAAGGGA+TGG + Chr3:50242213-50242232 MsG0380014134.01.T01:intron 35.0%
ATTATTTGGCGACAGATTGT+TGG + Chr3:50245356-50245375 MsG0380014134.01.T01:intron 35.0%
ATTGAAAAATCTGCTCCAAG+GGG + Chr3:50244138-50244157 MsG0380014134.01.T01:CDS 35.0%
ATTTCGATTTACTCATTGGC+TGG + Chr3:50241361-50241380 MsG0380014134.01.T01:intron 35.0%
CAGAACAGGTTAATCAATCA+AGG + Chr3:50240765-50240784 MsG0380014134.01.T01:CDS 35.0%
CATTGAAAAATCTGCTCCAA+GGG + Chr3:50244137-50244156 MsG0380014134.01.T01:CDS 35.0%
CCTAAACATGCAACAAAGTA+AGG - Chr3:50240413-50240432 None:intergenic 35.0%
CCTGATAAAAATGATGTAGG+TGG + Chr3:50244233-50244252 MsG0380014134.01.T01:intron 35.0%
CCTTACTTTGTTGCATGTTT+AGG + Chr3:50240410-50240429 MsG0380014134.01.T01:intron 35.0%
CGAAACATCAAACAACTGAA+TGG + Chr3:50242350-50242369 MsG0380014134.01.T01:intron 35.0%
CTCATTGAGATCTTCACTTA+GGG - Chr3:50244091-50244110 None:intergenic 35.0%
GAAAGATGCAAAAACGAGAA+TGG - Chr3:50239169-50239188 None:intergenic 35.0%
GAATTAGGATGGACAAAAGA+CGG - Chr3:50244940-50244959 None:intergenic 35.0%
GAGAAGAGTTTATAAAGAGG+AGG + Chr3:50243046-50243065 MsG0380014134.01.T01:intron 35.0%
GCAATCACTATGAGTATCAT+TGG + Chr3:50239310-50239329 MsG0380014134.01.T01:CDS 35.0%
TAAACCATGTTTGCAGTTGT+TGG - Chr3:50244979-50244998 None:intergenic 35.0%
TAAGCAGGTTCAGATAAAAC+AGG - Chr3:50245428-50245447 None:intergenic 35.0%
TCAGTTGTTTGATGTTTCGT+TGG - Chr3:50242349-50242368 None:intergenic 35.0%
TCATTGAAAAATCTGCTCCA+AGG + Chr3:50244136-50244155 MsG0380014134.01.T01:CDS 35.0%
TCTGTCAATAAAAAGTTGGC+AGG - Chr3:50243360-50243379 None:intergenic 35.0%
TCTTGTTGAATAGTTGCAAC+AGG - Chr3:50245099-50245118 None:intergenic 35.0%
TGAATAGTTGCAACAGGTAA+TGG - Chr3:50245093-50245112 None:intergenic 35.0%
TGCCTGTCTTTAGTAATGTA+TGG + Chr3:50241986-50242005 MsG0380014134.01.T01:intron 35.0%
TTGAAGTTGCTGAATTAGGA+TGG - Chr3:50244951-50244970 None:intergenic 35.0%
TTGTTAAATAGAAGCTGCCA+TGG + Chr3:50241737-50241756 MsG0380014134.01.T01:intron 35.0%
! AAAAGACGGGGAGAAAATTT+TGG - Chr3:50244926-50244945 None:intergenic 35.0%
! ATTGTAGTTGATGCATGTCT+TGG + Chr3:50243988-50244007 MsG0380014134.01.T01:intron 35.0%
! CATATTCGTAGCTAGACTTT+TGG + Chr3:50243468-50243487 MsG0380014134.01.T01:intron 35.0%
! CGCTTAACATTTTGAATTGG+TGG + Chr3:50244403-50244422 MsG0380014134.01.T01:intron 35.0%
! CTTTGAATCTTTTCATCCTG+TGG - Chr3:50243534-50243553 None:intergenic 35.0%
! CTTTTTATTGACAGACAAGC+TGG + Chr3:50243365-50243384 MsG0380014134.01.T01:intron 35.0%
! GTACATGTGATTTTGTGTGT+AGG + Chr3:50240640-50240659 MsG0380014134.01.T01:intron 35.0%
! TGGAAGTGTGGTTAAATACA+TGG + Chr3:50240048-50240067 MsG0380014134.01.T01:intron 35.0%
! TGTTTGATGTTTCGTTGGTT+CGG - Chr3:50242344-50242363 None:intergenic 35.0%
! TTCAATGCTTCTTAGGTTGT+TGG - Chr3:50240870-50240889 None:intergenic 35.0%
! TTGGATCTTTTTACACCTTC+AGG + Chr3:50243735-50243754 MsG0380014134.01.T01:intron 35.0%
! TTTGATGAAAATAGTGGAGG+CGG + Chr3:50239990-50240009 MsG0380014134.01.T01:intron 35.0%
!! ATGTGTAAGGCATGTTGTTT+TGG + Chr3:50243716-50243735 MsG0380014134.01.T01:intron 35.0%
!! CCACCTACATCATTTTTATC+AGG - Chr3:50244236-50244255 None:intergenic 35.0%
!! CTTGTTGTTTGCAAATAAGC+AGG - Chr3:50245443-50245462 None:intergenic 35.0%
!! CTTTATTGTGTTGGCTTTGA+GGG + Chr3:50242986-50243005 MsG0380014134.01.T01:intron 35.0%
!! TGTATTGATTGCTCAACTCA+AGG + Chr3:50241898-50241917 MsG0380014134.01.T01:intron 35.0%
!! TTTATTGTGTTGGCTTTGAG+GGG + Chr3:50242987-50243006 MsG0380014134.01.T01:intron 35.0%
!!! TTGCCAGTTTTGTTACATAG+CGG + Chr3:50241625-50241644 MsG0380014134.01.T01:intron 35.0%
AATGCGTAAGCTAGAGCTAT+TGG - Chr3:50241587-50241606 None:intergenic 40.0%
ACGGTTGAAGTTGCTGAATT+AGG - Chr3:50244955-50244974 None:intergenic 40.0%
ACTACTGAACTACACCTCAT+GGG + Chr3:50241402-50241421 MsG0380014134.01.T01:intron 40.0%
AGACATGAACATGCAAGCAT+TGG - Chr3:50245272-50245291 None:intergenic 40.0%
AGATTGTACCAGAAATGCCA+AGG + Chr3:50244164-50244183 MsG0380014134.01.T01:CDS 40.0%
AGCATATCGTGATGCAATAG+TGG - Chr3:50241702-50241721 None:intergenic 40.0%
AGCTGATAAAGCCAATGATC+AGG + Chr3:50244020-50244039 MsG0380014134.01.T01:CDS 40.0%
AGGATGAACATGGACTCAAA+TGG - Chr3:50242726-50242745 None:intergenic 40.0%
ATGGATGTTGAGATTGCACT+TGG + Chr3:50242632-50242651 MsG0380014134.01.T01:intron 40.0%
ATTAGGATGGACAAAAGACG+GGG - Chr3:50244938-50244957 None:intergenic 40.0%
ATTATGAGGTGAGAGATCAG+AGG - Chr3:50243885-50243904 None:intergenic 40.0%
ATTGAGATCTTCACTTAGGG+TGG - Chr3:50244088-50244107 None:intergenic 40.0%
CAGAAGTTTCTTTGACTGCT+GGG + Chr3:50240269-50240288 MsG0380014134.01.T01:intron 40.0%
CAGTATGGTAATTTGACGGT+CGG + Chr3:50245171-50245190 MsG0380014134.01.T01:CDS 40.0%
CCTAAGTGAAGATCTCAATG+AGG + Chr3:50244089-50244108 MsG0380014134.01.T01:CDS 40.0%
CCTCAAAGCCAACACAATAA+AGG - Chr3:50242988-50243007 None:intergenic 40.0%
CCTCATTGAGATCTTCACTT+AGG - Chr3:50244092-50244111 None:intergenic 40.0%
CTAACCAAAGGTCGCAATTT+AGG - Chr3:50242944-50242963 None:intergenic 40.0%
CTCCAACACCTTTATTGTGT+TGG + Chr3:50242977-50242996 MsG0380014134.01.T01:intron 40.0%
CTTATAGCGCTATTGCATAG+TGG + Chr3:50241664-50241683 MsG0380014134.01.T01:intron 40.0%
GAATGTGTAGAAGTAGTGTC+CGG - Chr3:50244066-50244085 None:intergenic 40.0%
GCAACTATTCAACAAGAAGC+TGG + Chr3:50245102-50245121 MsG0380014134.01.T01:CDS 40.0%
GCATGACACAAGATTACGAA+TGG - Chr3:50240562-50240581 None:intergenic 40.0%
GCATTAGTAATAGGCAAAGC+AGG + Chr3:50240302-50240321 MsG0380014134.01.T01:intron 40.0%
GCTGATAAAGCCAATGATCA+GGG + Chr3:50244021-50244040 MsG0380014134.01.T01:CDS 40.0%
GGAAATCCAACTCACTTTCA+TGG - Chr3:50243569-50243588 None:intergenic 40.0%
GGTTTGAGAGGAACATATGT+CGG - Chr3:50243853-50243872 None:intergenic 40.0%
GTACTGTATGTATGCATACC+CGG - Chr3:50239836-50239855 None:intergenic 40.0%
GTTCCTATGATGCATAGGTA+CGG - Chr3:50240239-50240258 None:intergenic 40.0%
TAACTTCCATCAACAGATGC+TGG + Chr3:50244201-50244220 MsG0380014134.01.T01:intron 40.0%
TAATGTTGGAAACGAGGCTT+TGG + Chr3:50240481-50240500 MsG0380014134.01.T01:CDS 40.0%
TACTACTGAACTACACCTCA+TGG + Chr3:50241401-50241420 MsG0380014134.01.T01:intron 40.0%
TAGCCGCTATGTAACAAAAC+TGG - Chr3:50241631-50241650 None:intergenic 40.0%
TAGTGAAAGGTCTACTTCAC+CGG + Chr3:50244044-50244063 MsG0380014134.01.T01:CDS 40.0%
TAGTGTGATCCTCTTTCAAC+AGG - Chr3:50239246-50239265 None:intergenic 40.0%
TATCTTTCTGTACTTACCGC+AGG - Chr3:50245470-50245489 None:intergenic 40.0%
TGCTGAGGTAGATGCTTAAT+TGG - Chr3:50240963-50240982 None:intergenic 40.0%
TGGGTCTCTCTAATTCTTAG+AGG - Chr3:50242315-50242334 None:intergenic 40.0%
TTCCTATGATGCATAGGTAC+GGG - Chr3:50240238-50240257 None:intergenic 40.0%
TTCTGCTGATAGTCATTCGA+TGG + Chr3:50240739-50240758 MsG0380014134.01.T01:CDS 40.0%
! AGCCAACACAATAAAGGTGT+TGG - Chr3:50242982-50243001 None:intergenic 40.0%
! ATAGTTGCAACAGGTAATGG+AGG - Chr3:50245090-50245109 None:intergenic 40.0%
! ATTCGTAGCTAGACTTTTGG+CGG + Chr3:50243471-50243490 MsG0380014134.01.T01:intron 40.0%
! TACGGGTGTTTCACCATTTT+AGG - Chr3:50239813-50239832 None:intergenic 40.0%
! TGCAAAAGGGTATATCCTGA+AGG - Chr3:50243753-50243772 None:intergenic 40.0%
! TGTGTAATTTTCATCTGGGG+TGG + Chr3:50239569-50239588 MsG0380014134.01.T01:intron 40.0%
!! ACGGGTACCGATAAGAAAAA+TGG - Chr3:50240202-50240221 None:intergenic 40.0%
!! CAACACAATAAAGGTGTTGG+AGG - Chr3:50242979-50242998 None:intergenic 40.0%
!! CCTTTATTGTGTTGGCTTTG+AGG + Chr3:50242985-50243004 MsG0380014134.01.T01:intron 40.0%
!! GAAGCATGATAATGGAAGTG+TGG + Chr3:50240036-50240055 MsG0380014134.01.T01:intron 40.0%
!! GGTGTTGGTGGAAATATAAC+TGG + Chr3:50240683-50240702 MsG0380014134.01.T01:CDS 40.0%
!! GTTTGTTATGGTAGCCACTA+AGG - Chr3:50243265-50243284 None:intergenic 40.0%
!! GTTTTGTTACATAGCGGCTA+TGG + Chr3:50241631-50241650 MsG0380014134.01.T01:intron 40.0%
!! TGGCTTTATCAGCTTCAACA+CGG - Chr3:50244014-50244033 None:intergenic 40.0%
!! TTATTGTGTTGGCTTTGAGG+GGG + Chr3:50242988-50243007 MsG0380014134.01.T01:intron 40.0%
AAAAAGTTGGCAGGAACCCA+AGG - Chr3:50243351-50243370 None:intergenic 45.0%
AAATGGTGAAACACCCGTAC+CGG + Chr3:50239814-50239833 MsG0380014134.01.T01:intron 45.0%
AACCCGTACCTATGCATCAT+AGG + Chr3:50240233-50240252 MsG0380014134.01.T01:intron 45.0%
AACTTCTGCTTGCAGTCATC+AGG - Chr3:50243413-50243432 None:intergenic 45.0%
AATTTGACGGTCGGAAATCC+TGG + Chr3:50245180-50245199 MsG0380014134.01.T01:CDS 45.0%
AGAGATCAGAGGCAATAGCA+AGG - Chr3:50243874-50243893 None:intergenic 45.0%
AGATTGTTGGCCAACTGACA+AGG + Chr3:50245369-50245388 MsG0380014134.01.T01:intron 45.0%
AGGATGACCAAGAAGGGAAA+GGG + Chr3:50240452-50240471 MsG0380014134.01.T01:CDS 45.0%
AGGCAATAGCAAGGTTTGAG+AGG - Chr3:50243865-50243884 None:intergenic 45.0%
AGGTAAACCATGTTTGCAGG+TGG - Chr3:50245018-50245037 None:intergenic 45.0%
AGTCGATGGATGACGTATCT+AGG - Chr3:50244723-50244742 None:intergenic 45.0%
ATCAGTAGGAGGAGAAGGTA+AGG - Chr3:50242758-50242777 None:intergenic 45.0%
ATCCAACTCACTTTCATGGC+CGG - Chr3:50243565-50243584 None:intergenic 45.0%
ATGATGCATAGGTACGGGTT+CGG - Chr3:50240233-50240252 None:intergenic 45.0%
CATGTTTGCAGTTGTTGGCA+CGG - Chr3:50244974-50244993 None:intergenic 45.0%
CCAATGATCAGGGTAGTGAA+AGG + Chr3:50244031-50244050 MsG0380014134.01.T01:CDS 45.0%
CCACAGTAATGTTGGAAACG+AGG + Chr3:50240475-50240494 MsG0380014134.01.T01:CDS 45.0%
CCAGAAGTTTCTTTGACTGC+TGG + Chr3:50240268-50240287 MsG0380014134.01.T01:intron 45.0%
CCAGCAGTCAAAGAAACTTC+TGG - Chr3:50240271-50240290 None:intergenic 45.0%
CCAGTTAAGGCTTCACAGTA+TGG + Chr3:50245156-50245175 MsG0380014134.01.T01:CDS 45.0%
CCATACTGTGAAGCCTTAAC+TGG - Chr3:50245159-50245178 None:intergenic 45.0%
CCTCGTTTCCAACATTACTG+TGG - Chr3:50240478-50240497 None:intergenic 45.0%
CCTTTCACTACCCTGATCAT+TGG - Chr3:50244034-50244053 None:intergenic 45.0%
CTGAAGGGCTTACTTACTTG+AGG - Chr3:50241284-50241303 None:intergenic 45.0%
CTGGAGATAACAACTCCAAC+GGG + Chr3:50243384-50243403 MsG0380014134.01.T01:CDS 45.0%
GAAAATTGAGAACCACTGCC+AGG - Chr3:50245201-50245220 None:intergenic 45.0%
GAGTGCAATCTATCCGATGT+GGG - Chr3:50243024-50243043 None:intergenic 45.0%
GAGTGTAATGTGCAGCATAC+TGG - Chr3:50245406-50245425 None:intergenic 45.0%
GCAGTCAAAGAAACTTCTGG+TGG - Chr3:50240268-50240287 None:intergenic 45.0%
GCTGGAGATAACAACTCCAA+CGG + Chr3:50243383-50243402 MsG0380014134.01.T01:CDS 45.0%
GTATGTATGCATACCCGGTA+CGG - Chr3:50239831-50239850 None:intergenic 45.0%
GTCGATGGATGACGTATCTA+GGG - Chr3:50244722-50244741 None:intergenic 45.0%
GTGTTATCAATTGGGGATCG+CGG - Chr3:50241810-50241829 None:intergenic 45.0%
GTTTAGCCAGCATCTGTTGA+TGG - Chr3:50244210-50244229 None:intergenic 45.0%
TAATGTGCAGCATACTGGAC+AGG - Chr3:50245401-50245420 None:intergenic 45.0%
TATGTATGCATACCCGGTAC+GGG - Chr3:50239830-50239849 None:intergenic 45.0%
TCAGTAGGAGGAGAAGGTAA+GGG - Chr3:50242757-50242776 None:intergenic 45.0%
TCATTCGATGGATGCAGAAC+AGG + Chr3:50240751-50240770 MsG0380014134.01.T01:CDS 45.0%
TCTCGTGCAAGTTGTTGCTA+AGG + Chr3:50240532-50240551 MsG0380014134.01.T01:CDS 45.0%
TGAGTGCAATCTATCCGATG+TGG - Chr3:50243025-50243044 None:intergenic 45.0%
TTCTCTTCTGTGAACCCATG+AGG - Chr3:50241419-50241438 None:intergenic 45.0%
TTGCTATCAGTAGGAGGAGA+AGG - Chr3:50242763-50242782 None:intergenic 45.0%
TTTGCAGGTGGAGAGCTATT+TGG - Chr3:50245006-50245025 None:intergenic 45.0%
! CTAAAGCTGCGATTTTCCAC+AGG + Chr3:50243515-50243534 MsG0380014134.01.T01:intron 45.0%
! GGCTTTGGTAGATACACTAG+TGG + Chr3:50240496-50240515 MsG0380014134.01.T01:CDS 45.0%
!! GGGAGAAAATTTTGGCAGCT+GGG - Chr3:50244918-50244937 None:intergenic 45.0%
!! GGTAATGGAGGAGAGCTATT+TGG - Chr3:50245078-50245097 None:intergenic 45.0%
!!! GGATTGTTTTGAAGCAAGCC+AGG + Chr3:50240432-50240451 MsG0380014134.01.T01:CDS 45.0%
AATGGTGAAACACCCGTACC+GGG + Chr3:50239815-50239834 MsG0380014134.01.T01:intron 50.0%
AGAAGCTGCCATGGCACTAT+AGG + Chr3:50241746-50241765 MsG0380014134.01.T01:intron 50.0%
AGGTCGCAATTTAGGCGACT+AGG - Chr3:50242936-50242955 None:intergenic 50.0%
ATGGAGGAGAGCTATTTGGC+AGG - Chr3:50245074-50245093 None:intergenic 50.0%
CAAGCCAGGATGACCAAGAA+GGG + Chr3:50240446-50240465 MsG0380014134.01.T01:CDS 50.0%
CACTTTCATGGCCGGAATGA+AGG - Chr3:50243557-50243576 None:intergenic 50.0%
CAGGATGACCAAGAAGGGAA+AGG + Chr3:50240451-50240470 MsG0380014134.01.T01:CDS 50.0%
CAGGTTGTGTCCTTGTCAGT+TGG - Chr3:50245382-50245401 None:intergenic 50.0%
CAGTAGGAGGAGAAGGTAAG+GGG - Chr3:50242756-50242775 None:intergenic 50.0%
CGTGCCAACAACTGCAAACA+TGG + Chr3:50244972-50244991 MsG0380014134.01.T01:CDS 50.0%
CTGCAACGAAGGCTAACCAA+AGG - Chr3:50242956-50242975 None:intergenic 50.0%
CTGGTACAATCTGTACCCCT+TGG - Chr3:50244156-50244175 None:intergenic 50.0%
CTTTCCCTTCTTGGTCATCC+TGG - Chr3:50240453-50240472 None:intergenic 50.0%
GAAGCCTTAACTGGCACAGA+AGG - Chr3:50245150-50245169 None:intergenic 50.0%
GCAAACAACAAGCTCTCCTG+CGG + Chr3:50245451-50245470 MsG0380014134.01.T01:CDS 50.0%
GCGTAAGCTAGAGCTATTGG+TGG - Chr3:50241584-50241603 None:intergenic 50.0%
GGAAAGGGCCACAGTAATGT+TGG + Chr3:50240467-50240486 MsG0380014134.01.T01:CDS 50.0%
GGCAGGTAAACCATGTTTGC+AGG - Chr3:50245021-50245040 None:intergenic 50.0%
GGGCATGGTAAGGATGAACA+TGG - Chr3:50242736-50242755 None:intergenic 50.0%
GGTCGCAATTTAGGCGACTA+GGG - Chr3:50242935-50242954 None:intergenic 50.0%
GTCGCAATTTAGGCGACTAG+GGG - Chr3:50242934-50242953 None:intergenic 50.0%
GTCGCCTAAATTGCGACCTT+TGG + Chr3:50242937-50242956 MsG0380014134.01.T01:intron 50.0%
TAGCTCTCCACCTGCAAACA+TGG + Chr3:50245008-50245027 MsG0380014134.01.T01:CDS 50.0%
TCGACCTTCTGTGCCAGTTA+AGG + Chr3:50245143-50245162 MsG0380014134.01.T01:CDS 50.0%
TGAGGAAGCAGTTACACACG+AGG + Chr3:50240712-50240731 MsG0380014134.01.T01:CDS 50.0%
TTCCGGCCATGAAAGTGAGT+TGG + Chr3:50243560-50243579 MsG0380014134.01.T01:CDS 50.0%
! AGAAGGTAAGGGGCATGGTA+AGG - Chr3:50242746-50242765 None:intergenic 50.0%
! GATGAAAATAGTGGAGGCGG+TGG + Chr3:50239993-50240012 MsG0380014134.01.T01:intron 50.0%
! GGGTGGATTTAGTCCCACAT+CGG + Chr3:50243008-50243027 MsG0380014134.01.T01:intron 50.0%
!! CAAAACCGGCTTGTAAGGTG+AGG - Chr3:50243076-50243095 None:intergenic 50.0%
!! GGGGAGAAAATTTTGGCAGC+TGG - Chr3:50244919-50244938 None:intergenic 50.0%
!! TTCGTTGGTTCGGAGAGACT+GGG - Chr3:50242334-50242353 None:intergenic 50.0%
!! TTTCGTTGGTTCGGAGAGAC+TGG - Chr3:50242335-50242354 None:intergenic 50.0%
ACTGTGGCCCTTTCCCTTCT+TGG - Chr3:50240462-50240481 None:intergenic 55.0%
ATAGGTACGGGTTCGGCACT+CGG - Chr3:50240226-50240245 None:intergenic 55.0%
CAGGTGGAGAGCTATTTGGC+AGG - Chr3:50245002-50245021 None:intergenic 55.0%
GCAAGCCAGGATGACCAAGA+AGG + Chr3:50240445-50240464 MsG0380014134.01.T01:CDS 55.0%
GCAATTTAGGCGACTAGGGG+CGG - Chr3:50242931-50242950 None:intergenic 55.0%
GCACTCCTCACCTTACAAGC+CGG + Chr3:50243068-50243087 MsG0380014134.01.T01:intron 55.0%
GCAGCACTCCTATAGTGCCA+TGG - Chr3:50241757-50241776 None:intergenic 55.0%
GCAGTCATCAGGTTTCCCGT+TGG - Chr3:50243402-50243421 None:intergenic 55.0%
GTAGGGAGTAACGCTTCCTG+CGG + Chr3:50240658-50240677 MsG0380014134.01.T01:intron 55.0%
TGGGGATCGCGGAAAAATGC+TGG - Chr3:50241799-50241818 None:intergenic 55.0%
TTTCCACCAACACCATCCGC+AGG - Chr3:50240677-50240696 None:intergenic 55.0%
!! TTGTGTTGGCTTTGAGGGGG+TGG + Chr3:50242991-50243010 MsG0380014134.01.T01:intron 55.0%
ACGCTTCCTGCGGATGGTGT+TGG + Chr3:50240668-50240687 MsG0380014134.01.T01:CDS 60.0%
ACGGTCGGAAATCCTGGCAG+TGG + Chr3:50245186-50245205 MsG0380014134.01.T01:CDS 60.0%
GGAGGAGAAGGTAAGGGGCA+TGG - Chr3:50242751-50242770 None:intergenic 60.0%
GGAGTAACGCTTCCTGCGGA+TGG + Chr3:50240662-50240681 MsG0380014134.01.T01:CDS 60.0%
TACGGGTTCGGCACTCGGTA+CGG - Chr3:50240221-50240240 None:intergenic 60.0%
! CTTCCTGCGGATGGTGTTGG+TGG + Chr3:50240671-50240690 MsG0380014134.01.T01:CDS 60.0%
! GGTGTTGGAGGCTGCAACGA+AGG - Chr3:50242967-50242986 None:intergenic 60.0%
ACGGGTTCGGCACTCGGTAC+GGG - Chr3:50240220-50240239 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 50239099 50245508 50239099 ID=MsG0380014134.01;Name=MsG0380014134.01
Chr3 mRNA 50239099 50245508 50239099 ID=MsG0380014134.01.T01;Parent=MsG0380014134.01;Name=MsG0380014134.01.T01;_AED=0.46;_eAED=0.47;_QI=124|0.85|0.75|1|1|1|8|0|408
Chr3 exon 50239099 50239412 50239099 ID=MsG0380014134.01.T01:exon:9592;Parent=MsG0380014134.01.T01
Chr3 exon 50240432 50240553 50240432 ID=MsG0380014134.01.T01:exon:9593;Parent=MsG0380014134.01.T01
Chr3 exon 50240662 50240786 50240662 ID=MsG0380014134.01.T01:exon:9594;Parent=MsG0380014134.01.T01
Chr3 exon 50243379 50243451 50243379 ID=MsG0380014134.01.T01:exon:9595;Parent=MsG0380014134.01.T01
Chr3 exon 50243537 50243597 50243537 ID=MsG0380014134.01.T01:exon:9596;Parent=MsG0380014134.01.T01
Chr3 exon 50243995 50244185 50243995 ID=MsG0380014134.01.T01:exon:9597;Parent=MsG0380014134.01.T01
Chr3 exon 50244901 50245227 50244901 ID=MsG0380014134.01.T01:exon:9598;Parent=MsG0380014134.01.T01
Chr3 exon 50245371 50245508 50245371 ID=MsG0380014134.01.T01:exon:9599;Parent=MsG0380014134.01.T01
Chr3 five_prime_UTR 50239099 50239222 50239099 ID=MsG0380014134.01.T01:five_prime_utr;Parent=MsG0380014134.01.T01
Chr3 CDS 50239223 50239412 50239223 ID=MsG0380014134.01.T01:cds;Parent=MsG0380014134.01.T01
Chr3 CDS 50240432 50240553 50240432 ID=MsG0380014134.01.T01:cds;Parent=MsG0380014134.01.T01
Chr3 CDS 50240662 50240786 50240662 ID=MsG0380014134.01.T01:cds;Parent=MsG0380014134.01.T01
Chr3 CDS 50243379 50243451 50243379 ID=MsG0380014134.01.T01:cds;Parent=MsG0380014134.01.T01
Chr3 CDS 50243537 50243597 50243537 ID=MsG0380014134.01.T01:cds;Parent=MsG0380014134.01.T01
Chr3 CDS 50243995 50244185 50243995 ID=MsG0380014134.01.T01:cds;Parent=MsG0380014134.01.T01
Chr3 CDS 50244901 50245227 50244901 ID=MsG0380014134.01.T01:cds;Parent=MsG0380014134.01.T01
Chr3 CDS 50245371 50245508 50245371 ID=MsG0380014134.01.T01:cds;Parent=MsG0380014134.01.T01
Gene Sequence

>MsG0380014134.01.T01

ATGGGTTACAGAAAAAAGAACCTGTTGAAAGAGGATCACACTATTTCTTCTTCAAATTGTAATAAATCATTGAGTGAAGCAATGCTTGCAATCACTATGAGTATCATTGGTTTACCTGTTGATGTTCATGTTAAAGATGGTTCTGTATATTCTGGAATCTTCTTCACTGCTTCTACTGAATCAAATTTCGGGATTGTTTTGAAGCAAGCCAGGATGACCAAGAAGGGAAAGGGCCACAGTAATGTTGGAAACGAGGCTTTGGTAGATACACTAGTGGTTTTATCAGATGATCTCGTGCAAGTTGTTGCTAAGGGAGTAACGCTTCCTGCGGATGGTGTTGGTGGAAATATAACTGGTGATTATGAGGAAGCAGTTACACACGAGGTTTGTTCTGCTGATAGTCATTCGATGGATGCAGAACAGGTTAATCAATCAAGACAAGCTGGAGATAACAACTCCAACGGGAAACCTGATGACTGCAAGCAGAAGTTTGAATTTAACAAAAACAAAGATGAAAAGATTCAAAGCCTTCATTCCGGCCATGAAAGTGAGTTGGATTTCCCTGATCTCTTTGATGCATGTCTTGGCCGTGTTGAAGCTGATAAAGCCAATGATCAGGGTAGTGAAAGGTCTACTTCACCGGACACTACTTCTACACATTCCACCCTAAGTGAAGATCTCAATGAGGCATCACATAATTCTCCAGCAAAATTCATTGAAAAATCTGCTCCAAGGGGTACAGATTGTACCAGAAATGCCAAGGAATTTAAGCTCAACCCAGCTGCCAAAATTTTCTCCCCGTCTTTTGTCCATCCTAATTCAGCAACTTCAACCGTGCCAACAACTGCAAACATGGTTTACGTGCCAAATAGCTCTCCACCTGCAAACATGGTTTACCTGCCAAATAGCTCTCCACCTGCAAACATGGTTTACCTGCCAAATAGCTCTCCTCCATTACCTGTTGCAACTATTCAACAAGAAGCTGGATTCAATAATTTTGCTTCTCGACCTTCTGTGCCAGTTAAGGCTTCACAGTATGGTAATTTGACGGTCGGAAATCCTGGCAGTGGTTCTCAATTTTCACAACCTATTGTTGGCCAACTGACAAGGACACAACCTGTCCAGTATGCTGCACATTACACTCCTGTTTTATCTGAACCTGCTTATTTGCAAACAACAAGCTCTCCTGCGGTAAGTACAGAAAGATATAATGCACCTTCAATCTAA
Protein sequence

>MsG0380014134.01.T01

MGYRKKNLLKEDHTISSSNCNKSLSEAMLAITMSIIGLPVDVHVKDGSVYSGIFFTASTESNFGIVLKQARMTKKGKGHSNVGNEALVDTLVVLSDDLVQVVAKGVTLPADGVGGNITGDYEEAVTHEVCSADSHSMDAEQVNQSRQAGDNNSNGKPDDCKQKFEFNKNKDEKIQSLHSGHESELDFPDLFDACLGRVEADKANDQGSERSTSPDTTSTHSTLSEDLNEASHNSPAKFIEKSAPRGTDCTRNAKEFKLNPAAKIFSPSFVHPNSATSTVPTTANMVYVPNSSPPANMVYLPNSSPPANMVYLPNSSPPLPVATIQQEAGFNNFASRPSVPVKASQYGNLTVGNPGSGSQFSQPIVGQLTRTQPVQYAAHYTPVLSEPAYLQTTSSPAVSTERYNAPSI*