AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014224.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014224.01.T01 MTR_3g053170 97.970 197 4 0 10 206 110 306 3.61e-143 401
MsG0380014224.01.T01 MTR_8g106940 57.732 194 82 0 11 204 123 316 2.07e-73 225
MsG0380014224.01.T01 MTR_6g065170 58.201 189 79 0 10 198 122 310 4.67e-72 221
MsG0380014224.01.T01 MTR_5g093460 57.297 185 79 0 13 197 253 437 1.26e-65 208
MsG0380014224.01.T01 MTR_1g056470 64.706 136 48 0 10 145 118 253 1.54e-55 177
MsG0380014224.01.T01 MTR_3g018640 53.672 177 82 0 13 189 125 301 3.88e-55 177
MsG0380014224.01.T01 MTR_1g043540 57.377 122 51 1 30 151 9 129 8.91e-38 128
MsG0380014224.01.T01 MTR_1g043500 49.206 63 31 1 84 145 3 65 7.48e-14 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014224.01.T01 AT3G20800 87.113 194 24 1 11 204 124 316 2.31e-123 352
MsG0380014224.01.T01 AT5G12980 78.173 197 37 2 11 206 120 311 2.03e-109 316
MsG0380014224.01.T01 AT2G32550 34.463 177 113 2 13 186 50 226 8.89e-30 110
MsG0380014224.01.T01 AT2G32550 34.463 177 113 2 13 186 105 281 3.64e-29 110
MsG0380014224.01.T01 AT2G32550 34.078 179 115 2 13 188 144 322 1.11e-28 109

Find 47 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAAAACTTTAATTAAGTA+TGG 0.159255 3:+51606121 None:intergenic
TTCGCTGTTGGTCGAGTTCT+TGG 0.255938 3:-51607270 MsG0380014224.01.T01:CDS
TTATATGAAAAGGGCAGTTT+TGG 0.301301 3:+51606092 None:intergenic
TGGATTTGCTTGTTGTGTTC+AGG 0.306518 3:+51608631 None:intergenic
TGCAGCCACTTCCTAGTTGT+TGG 0.322430 3:+51606386 None:intergenic
TCCGCTGTGCCTGCGCACTA+TGG 0.351143 3:-51608130 MsG0380014224.01.T01:CDS
TTCACAATGTTGGAGGGAAT+CGG 0.370583 3:-51606355 MsG0380014224.01.T01:CDS
GGTGAATTGAGTATAAACTA+TGG 0.374597 3:-51606291 MsG0380014224.01.T01:exon
GCAGCCACTTCCTAGTTGTT+GGG 0.391810 3:+51606387 None:intergenic
TCTGTTAGACGATGTGGGCT+TGG 0.418307 3:-51607322 MsG0380014224.01.T01:CDS
GTGCCTGCGCACTATGGAGA+TGG 0.432141 3:-51608124 MsG0380014224.01.T01:CDS
GCTGTCTTCCTGACATGTTA+AGG 0.437363 3:-51607000 MsG0380014224.01.T01:CDS
CCTCCTCCACCTTGCAGTGC+AGG 0.438234 3:+51606329 None:intergenic
TACTTGAGGCTTACTAGTCT+TGG 0.443121 3:-51608597 MsG0380014224.01.T01:CDS
TCACAATGTTGGAGGGAATC+GGG 0.446766 3:-51606354 MsG0380014224.01.T01:CDS
CCTCAAGTACTCAAAAGGTC+TGG 0.463934 3:+51608611 None:intergenic
TTAAAACTTTAATTAAGTAT+GGG 0.468702 3:+51606122 None:intergenic
CTGTCTTCCTGACATGTTAA+GGG 0.471286 3:-51606999 MsG0380014224.01.T01:CDS
CCTGCACTGCAAGGTGGAGG+AGG 0.475249 3:-51606329 MsG0380014224.01.T01:CDS
TGCCTGCGCACTATGGAGAT+GGG 0.477491 3:-51608123 MsG0380014224.01.T01:CDS
GTAAGCCTCAAGTACTCAAA+AGG 0.495117 3:+51608606 None:intergenic
GTTCCTGCACTGCAAGGTGG+AGG 0.514765 3:-51606332 MsG0380014224.01.T01:CDS
CAACAACTGATTCACAATGT+TGG 0.517621 3:-51606365 MsG0380014224.01.T01:CDS
GTAGCGTCCCTTAACATGTC+AGG 0.521137 3:+51606992 None:intergenic
AAAGATTCTGTTAGACGATG+TGG 0.532417 3:-51607328 MsG0380014224.01.T01:CDS
TTGCTTGTTGTGTTCAGGAA+CGG 0.537424 3:+51608636 None:intergenic
CTTACTAGTCTTGGTGTCAT+CGG 0.543029 3:-51608588 MsG0380014224.01.T01:CDS
TAAAACTTTAATTAAGTATG+GGG 0.546221 3:+51606123 None:intergenic
GGGGAGTGAGCTCTCTAAAA+CGG 0.547334 3:-51608103 MsG0380014224.01.T01:intron
TGCTTCAACAGACGAGATGA+TGG 0.564466 3:+51607219 None:intergenic
TCCCCATCTCCATAGTGCGC+AGG 0.574764 3:+51608121 None:intergenic
AACTGATTCACAATGTTGGA+GGG 0.575243 3:-51606361 MsG0380014224.01.T01:CDS
CAACTGATTCACAATGTTGG+AGG 0.581651 3:-51606362 MsG0380014224.01.T01:CDS
TTCAGGAGGACCCAACAACT+AGG 0.584464 3:-51606397 MsG0380014224.01.T01:intron
AAGATTCTGTTAGACGATGT+GGG 0.593200 3:-51607327 MsG0380014224.01.T01:CDS
AGGACCCAACAACTAGGAAG+TGG 0.596471 3:-51606391 MsG0380014224.01.T01:CDS
AATCGGGTTCCTGCACTGCA+AGG 0.603945 3:-51606338 MsG0380014224.01.T01:CDS
TGGTCGAGTTCTTGGAAACA+TGG 0.623015 3:-51607262 MsG0380014224.01.T01:CDS
TTCGTCTGTCAGATAACCCG+AGG 0.629082 3:-51607179 MsG0380014224.01.T01:intron
TGTCATCGGTGCACTAGTGA+AGG 0.630356 3:-51608574 MsG0380014224.01.T01:intron
GCCTGCGCACTATGGAGATG+GGG 0.643265 3:-51608122 MsG0380014224.01.T01:CDS
CGGGTTCCTGCACTGCAAGG+TGG 0.654150 3:-51606335 MsG0380014224.01.T01:CDS
TCCATAGTGCGCAGGCACAG+CGG 0.666861 3:+51608129 None:intergenic
TTTAGTACACAAATACACAA+TGG 0.678480 3:+51606202 None:intergenic
TCACCAGGTTGATGATACTG+AGG 0.679946 3:-51608184 MsG0380014224.01.T01:intron
TCGAGTTCTTGGAAACATGG+TGG 0.707168 3:-51607259 MsG0380014224.01.T01:CDS
AGGAACGGATACAAATACAG+AGG 0.734864 3:+51608651 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATATAAAACAAAAATAG+AGG + Chr3:51606462-51606481 None:intergenic 10.0%
!! TTAAAACTTTAATTAAGTAT+GGG + Chr3:51608686-51608705 None:intergenic 10.0%
!!! AAATTATTGAATACAATTTT+TGG - Chr3:51607287-51607306 MsG0380014224.01.T01:CDS 10.0%
!! ATAAATAGTTTAGATATTGT+AGG + Chr3:51607977-51607996 None:intergenic 15.0%
!! ATTATCTCATATACATTAAT+AGG + Chr3:51607392-51607411 None:intergenic 15.0%
!! CTTAAAACTTTAATTAAGTA+TGG + Chr3:51608687-51608706 None:intergenic 15.0%
!! TAAAACTTTAATTAAGTATG+GGG + Chr3:51608685-51608704 None:intergenic 15.0%
!! TTATCTCATATACATTAATA+GGG + Chr3:51607391-51607410 None:intergenic 15.0%
!!! CTTTTATTGTATAGATTTTA+AGG - Chr3:51607331-51607350 MsG0380014224.01.T01:CDS 15.0%
!!! TAACAATTTATTAGTTTTCT+TGG + Chr3:51607929-51607948 None:intergenic 15.0%
!!! TTAAATACTATTTTGTCATT+AGG - Chr3:51607262-51607281 MsG0380014224.01.T01:CDS 15.0%
!!! TTGTTTACAATACTTATTTT+TGG - Chr3:51608376-51608395 MsG0380014224.01.T01:intron 15.0%
!!! ATTTTTGGTTTTGTTTATTC+AGG - Chr3:51608391-51608410 MsG0380014224.01.T01:intron 20.0%
!!! TCAATATGTTATTTGAGTAA+TGG - Chr3:51607220-51607239 MsG0380014224.01.T01:CDS 20.0%
! AAAACAGACTATTGCATATT+TGG + Chr3:51608202-51608221 None:intergenic 25.0%
! AATCACACCAAAAAAAAGAA+TGG + Chr3:51607887-51607906 None:intergenic 25.0%
! ATTTATTATCTAATTCCACC+TGG - Chr3:51607991-51608010 MsG0380014224.01.T01:intron 25.0%
! GTGAAGAAATCATTAACAAT+AGG - Chr3:51608243-51608262 MsG0380014224.01.T01:intron 25.0%
! TTTAGTACACAAATACACAA+TGG + Chr3:51608606-51608625 None:intergenic 25.0%
!! ATTCTATTTGTCACTTATGT+AGG + Chr3:51608112-51608131 None:intergenic 25.0%
!! GATTCGACAAAATTTTACAT+TGG + Chr3:51608166-51608185 None:intergenic 25.0%
!!! GAATACAATTTTTGGTCATT+AGG - Chr3:51607295-51607314 MsG0380014224.01.T01:CDS 25.0%
!!! GATATTCTTGTTTTACCTTT+TGG - Chr3:51607120-51607139 MsG0380014224.01.T01:intron 25.0%
AAGTGACAAATAGAATCAGA+GGG - Chr3:51608116-51608135 MsG0380014224.01.T01:CDS 30.0%
AATGTATCCGTATGAAATGT+AGG + Chr3:51606307-51606326 None:intergenic 30.0%
AATGTTAATCGAACATTGAC+AGG + Chr3:51606822-51606841 None:intergenic 30.0%
AATTCATCCAAACAAGTTGT+TGG + Chr3:51606425-51606444 None:intergenic 30.0%
ACACCAAAAAAAAGAATGGA+GGG + Chr3:51607883-51607902 None:intergenic 30.0%
ACCAAGAGTTTGATTAATGA+TGG + Chr3:51607752-51607771 None:intergenic 30.0%
AGTGGCAACATAAAATAAAC+TGG + Chr3:51607359-51607378 None:intergenic 30.0%
GGTGAATTGAGTATAAACTA+TGG - Chr3:51608514-51608533 MsG0380014224.01.T01:intron 30.0%
TAAGTGACAAATAGAATCAG+AGG - Chr3:51608115-51608134 MsG0380014224.01.T01:CDS 30.0%
TGACTTTAAACATGTAGTAG+CGG + Chr3:51606932-51606951 None:intergenic 30.0%
TTGAGTAATGGCATTTGTAT+GGG - Chr3:51607232-51607251 MsG0380014224.01.T01:CDS 30.0%
TTTATTGCAGAGAAAAAACC+AGG + Chr3:51608012-51608031 None:intergenic 30.0%
TTTGAGTAATGGCATTTGTA+TGG - Chr3:51607231-51607250 MsG0380014224.01.T01:CDS 30.0%
TTTGGAAACTAACAAAACCA+AGG + Chr3:51607014-51607033 None:intergenic 30.0%
! AAACTGATTTAGCATGTGTT+TGG + Chr3:51607032-51607051 None:intergenic 30.0%
! CAGCTCTAACATTAAAGATT+TGG + Chr3:51608310-51608329 None:intergenic 30.0%
! GGATTTTGTGATGAATCTTT+TGG + Chr3:51606371-51606390 None:intergenic 30.0%
! TAATGATGGCATTTGAAACT+TGG + Chr3:51607738-51607757 None:intergenic 30.0%
!!! ATTCCCTCCATTCTTTTTTT+TGG - Chr3:51607877-51607896 MsG0380014224.01.T01:intron 30.0%
!!! CTGTTTTTTGTTGAGTGAAA+TGG - Chr3:51608215-51608234 MsG0380014224.01.T01:intron 30.0%
!!! GTTTTTTCAAAGTGACTGAA+TGG + Chr3:51608341-51608360 None:intergenic 30.0%
!!! TTTGGTTTTGTTTATTCAGG+AGG - Chr3:51608394-51608413 MsG0380014224.01.T01:intron 30.0%
AAAGATTCTGTTAGACGATG+TGG - Chr3:51607477-51607496 MsG0380014224.01.T01:intron 35.0%
AAGATTCTGTTAGACGATGT+GGG - Chr3:51607478-51607497 MsG0380014224.01.T01:intron 35.0%
CAATCCTATTAACAAACCTC+GGG + Chr3:51607645-51607664 None:intergenic 35.0%
CACACCAAAAAAAAGAATGG+AGG + Chr3:51607884-51607903 None:intergenic 35.0%
CATTATAAAGAGTTGTGTCG+AGG + Chr3:51606392-51606411 None:intergenic 35.0%
CTAACAAAACCAAGGTGAAA+AGG + Chr3:51607006-51607025 None:intergenic 35.0%
CTCGACACAACTCTTTATAA+TGG - Chr3:51606390-51606409 MsG0380014224.01.T01:CDS 35.0%
GAACATTGACAGGAAAAATG+TGG + Chr3:51606812-51606831 None:intergenic 35.0%
GAGATGACCTACATTTCATA+CGG - Chr3:51606297-51606316 MsG0380014224.01.T01:exon 35.0%
GATTCTTGATTGTCTGTCTT+GGG - Chr3:51606735-51606754 MsG0380014224.01.T01:intron 35.0%
GCAATCCTATTAACAAACCT+CGG + Chr3:51607646-51607665 None:intergenic 35.0%
GCCATCATTAATCAAACTCT+TGG - Chr3:51607748-51607767 MsG0380014224.01.T01:intron 35.0%
GGATTGTTTAAACTTTGCTG+GGG - Chr3:51607181-51607200 MsG0380014224.01.T01:CDS 35.0%
GGGATTGTTTAAACTTTGCT+GGG - Chr3:51607180-51607199 MsG0380014224.01.T01:CDS 35.0%
GGGTAAATTTATGCAAACAC+AGG - Chr3:51606755-51606774 MsG0380014224.01.T01:intron 35.0%
TAACAATAGGTCCAAGAGAA+AGG - Chr3:51608256-51608275 MsG0380014224.01.T01:intron 35.0%
TAAGTGCTTGTTTGTTTGTG+CGG - Chr3:51606899-51606918 MsG0380014224.01.T01:intron 35.0%
TCCTTACTCATTCTGATGTT+GGG - Chr3:51606261-51606280 MsG0380014224.01.T01:three_prime_UTR 35.0%
TGATTCTTGATTGTCTGTCT+TGG - Chr3:51606734-51606753 MsG0380014224.01.T01:intron 35.0%
TGGGATTGTTTAAACTTTGC+TGG - Chr3:51607179-51607198 MsG0380014224.01.T01:intron 35.0%
TTCCTTACTCATTCTGATGT+TGG - Chr3:51606260-51606279 MsG0380014224.01.T01:three_prime_UTR 35.0%
TTTGTCGAATCTCTATGACT+TGG - Chr3:51608175-51608194 MsG0380014224.01.T01:CDS 35.0%
! AACTGATTCACAATGTTGGA+GGG - Chr3:51608444-51608463 MsG0380014224.01.T01:intron 35.0%
! ATTTGAAACTTGGCAGGAAA+GGG + Chr3:51607728-51607747 None:intergenic 35.0%
! CAACAACTGATTCACAATGT+TGG - Chr3:51608440-51608459 MsG0380014224.01.T01:intron 35.0%
! TATTTTATGTTGCCACTGTC+TGG - Chr3:51607362-51607381 MsG0380014224.01.T01:intron 35.0%
! TGAAAGTCCAACAACTTGTT+TGG - Chr3:51606415-51606434 MsG0380014224.01.T01:intron 35.0%
!! ACTCTTGGTCTTGTTAAATC+AGG - Chr3:51607763-51607782 MsG0380014224.01.T01:intron 35.0%
!! AGGAGGTTTTGATCATCTAA+TGG - Chr3:51608493-51608512 MsG0380014224.01.T01:intron 35.0%
!! ATAACCCGAGGTTTGTTAAT+AGG - Chr3:51607638-51607657 MsG0380014224.01.T01:intron 35.0%
!! CTCTTGGTCTTGTTAAATCA+GGG - Chr3:51607764-51607783 MsG0380014224.01.T01:intron 35.0%
AAAACCAAGGTGAAAAGGCA+CGG + Chr3:51607001-51607020 None:intergenic 40.0%
AAGAGGCAATTTCAGCAGAA+AGG + Chr3:51607700-51607719 None:intergenic 40.0%
AAGGGTTTAGCTATGGTCAT+GGG - Chr3:51607160-51607179 MsG0380014224.01.T01:intron 40.0%
ACCCAACATCAGAATGAGTA+AGG + Chr3:51606265-51606284 None:intergenic 40.0%
AGAGGCAATTTCAGCAGAAA+GGG + Chr3:51607699-51607718 None:intergenic 40.0%
AGGAACGGATACAAATACAG+AGG + Chr3:51606157-51606176 None:intergenic 40.0%
ATTGCAGAGAAAAAACCAGG+TGG + Chr3:51608009-51608028 None:intergenic 40.0%
CACAAGGAATACTTACACGA+AGG + Chr3:51607851-51607870 None:intergenic 40.0%
CATAGCTAAACCCTTGGATT+GGG + Chr3:51607155-51607174 None:intergenic 40.0%
CTGTCTTCCTGACATGTTAA+GGG - Chr3:51607806-51607825 MsG0380014224.01.T01:intron 40.0%
GAAAAATGTGGCTAAGGAGA+TGG + Chr3:51606800-51606819 None:intergenic 40.0%
GTAAGCCTCAAGTACTCAAA+AGG + Chr3:51606202-51606221 None:intergenic 40.0%
TAACCTCAGTATCATCAACC+TGG + Chr3:51606627-51606646 None:intergenic 40.0%
TCTAGTTACGACCTTTCTCT+TGG + Chr3:51608270-51608289 None:intergenic 40.0%
TGACAGGAAAAATGTGGCTA+AGG + Chr3:51606806-51606825 None:intergenic 40.0%
TGAGCATGATAGTCTAACGA+AGG - Chr3:51607420-51607439 MsG0380014224.01.T01:intron 40.0%
TGGAGGGAATAGTAATCACA+AGG + Chr3:51607867-51607886 None:intergenic 40.0%
TTAATAGGGAAACCAGACAG+TGG + Chr3:51607377-51607396 None:intergenic 40.0%
TTACTCATTCTGATGTTGGG+TGG - Chr3:51606264-51606283 MsG0380014224.01.T01:three_prime_UTR 40.0%
TTCACAATGTTGGAGGGAAT+CGG - Chr3:51608450-51608469 MsG0380014224.01.T01:intron 40.0%
! CAACTGATTCACAATGTTGG+AGG - Chr3:51608443-51608462 MsG0380014224.01.T01:intron 40.0%
! CATTTGAAACTTGGCAGGAA+AGG + Chr3:51607729-51607748 None:intergenic 40.0%
! CTACTAGCTTCTCAATACCA+CGG + Chr3:51606961-51606980 None:intergenic 40.0%
! GTCTGAATTTTCTGTTCACC+AGG - Chr3:51606606-51606625 MsG0380014224.01.T01:intron 40.0%
! GTTTAAAGTCAATCTCACCG+TGG - Chr3:51606941-51606960 MsG0380014224.01.T01:intron 40.0%
! TACTTGAGGCTTACTAGTCT+TGG - Chr3:51606208-51606227 MsG0380014224.01.T01:three_prime_UTR 40.0%
!! CTTACTAGTCTTGGTGTCAT+CGG - Chr3:51606217-51606236 MsG0380014224.01.T01:three_prime_UTR 40.0%
!! TGGATTTGCTTGTTGTGTTC+AGG + Chr3:51606177-51606196 None:intergenic 40.0%
!! TTGCTTGTTGTGTTCAGGAA+CGG + Chr3:51606172-51606191 None:intergenic 40.0%
AATTTCAGCAGAAAGGGAGG+AGG + Chr3:51607693-51607712 None:intergenic 45.0%
ATTGGGAGCAGCTATCCAAA+AGG + Chr3:51607138-51607157 None:intergenic 45.0%
ATTTCAGCAGAAAGGGAGGA+GGG + Chr3:51607692-51607711 None:intergenic 45.0%
CAAGGGTTTAGCTATGGTCA+TGG - Chr3:51607159-51607178 MsG0380014224.01.T01:intron 45.0%
CATGACCATAGCTAAACCCT+TGG + Chr3:51607161-51607180 None:intergenic 45.0%
CCAATCCAAGGGTTTAGCTA+TGG - Chr3:51607153-51607172 MsG0380014224.01.T01:intron 45.0%
CCATAGCTAAACCCTTGGAT+TGG + Chr3:51607156-51607175 None:intergenic 45.0%
CCTCAAGTACTCAAAAGGTC+TGG + Chr3:51606197-51606216 None:intergenic 45.0%
GCTGTCTTCCTGACATGTTA+AGG - Chr3:51607805-51607824 MsG0380014224.01.T01:intron 45.0%
TCACAATGTTGGAGGGAATC+GGG - Chr3:51608451-51608470 MsG0380014224.01.T01:intron 45.0%
TCGAGTTCTTGGAAACATGG+TGG - Chr3:51607546-51607565 MsG0380014224.01.T01:intron 45.0%
TGCTTCAACAGACGAGATGA+TGG + Chr3:51607589-51607608 None:intergenic 45.0%
TGGTCGAGTTCTTGGAAACA+TGG - Chr3:51607543-51607562 MsG0380014224.01.T01:intron 45.0%
! CGTGGTATTGAGAAGCTAGT+AGG - Chr3:51606959-51606978 MsG0380014224.01.T01:intron 45.0%
! GATGGCATTTGAAACTTGGC+AGG + Chr3:51607734-51607753 None:intergenic 45.0%
!! CCAGACCTTTTGAGTACTTG+AGG - Chr3:51606194-51606213 MsG0380014224.01.T01:three_prime_UTR 45.0%
!! TCACCAGGTTGATGATACTG+AGG - Chr3:51606621-51606640 MsG0380014224.01.T01:intron 45.0%
AGGACCCAACAACTAGGAAG+TGG - Chr3:51608414-51608433 MsG0380014224.01.T01:intron 50.0%
GATAGCTGCTCCCAATCCAA+GGG - Chr3:51607142-51607161 MsG0380014224.01.T01:intron 50.0%
GCAGCCACTTCCTAGTTGTT+GGG + Chr3:51608421-51608440 None:intergenic 50.0%
GGCAATTTCAGCAGAAAGGG+AGG + Chr3:51607696-51607715 None:intergenic 50.0%
GTAGCGTCCCTTAACATGTC+AGG + Chr3:51607816-51607835 None:intergenic 50.0%
TCTGTTAGACGATGTGGGCT+TGG - Chr3:51607483-51607502 MsG0380014224.01.T01:intron 50.0%
TGCAGCCACTTCCTAGTTGT+TGG + Chr3:51608422-51608441 None:intergenic 50.0%
TGTCATCGGTGCACTAGTGA+AGG - Chr3:51606231-51606250 MsG0380014224.01.T01:three_prime_UTR 50.0%
TTCAGGAGGACCCAACAACT+AGG - Chr3:51608408-51608427 MsG0380014224.01.T01:intron 50.0%
TTCGCTGTTGGTCGAGTTCT+TGG - Chr3:51607535-51607554 MsG0380014224.01.T01:intron 50.0%
TTCGTCTGTCAGATAACCCG+AGG - Chr3:51607626-51607645 MsG0380014224.01.T01:intron 50.0%
TTTCAGCAGAAAGGGAGGAG+GGG + Chr3:51607691-51607710 None:intergenic 50.0%
! GGGGAGTGAGCTCTCTAAAA+CGG - Chr3:51606702-51606721 MsG0380014224.01.T01:intron 50.0%
AACGAAGGCTCTGCTGCAAC+AGG - Chr3:51607435-51607454 MsG0380014224.01.T01:intron 55.0%
AATCGGGTTCCTGCACTGCA+AGG - Chr3:51608467-51608486 MsG0380014224.01.T01:intron 55.0%
GGATAGCTGCTCCCAATCCA+AGG - Chr3:51607141-51607160 MsG0380014224.01.T01:intron 55.0%
TGCCTGCGCACTATGGAGAT+GGG - Chr3:51606682-51606701 MsG0380014224.01.T01:intron 55.0%
! CCAACCGTGCCTTTTCACCT+TGG - Chr3:51606994-51607013 MsG0380014224.01.T01:CDS 55.0%
! CCAAGGTGAAAAGGCACGGT+TGG + Chr3:51606997-51607016 None:intergenic 55.0%
! GGCAGGAAAGGGCATGAAAG+AGG + Chr3:51607717-51607736 None:intergenic 55.0%
!!! GCTGAGCGCTTTTTCGCTGT+TGG - Chr3:51607523-51607542 MsG0380014224.01.T01:intron 55.0%
AGAAAGGGAGGAGGGGAAGG+AGG + Chr3:51607684-51607703 None:intergenic 60.0%
AGCAGAAAGGGAGGAGGGGA+AGG + Chr3:51607687-51607706 None:intergenic 60.0%
GCCTGCGCACTATGGAGATG+GGG - Chr3:51606683-51606702 MsG0380014224.01.T01:intron 60.0%
GTGCCTGCGCACTATGGAGA+TGG - Chr3:51606681-51606700 MsG0380014224.01.T01:intron 60.0%
GTTCCTGCACTGCAAGGTGG+AGG - Chr3:51608473-51608492 MsG0380014224.01.T01:intron 60.0%
TCCATAGTGCGCAGGCACAG+CGG + Chr3:51606679-51606698 None:intergenic 60.0%
TCCCCATCTCCATAGTGCGC+AGG + Chr3:51606687-51606706 None:intergenic 60.0%
CCTCCTCCACCTTGCAGTGC+AGG + Chr3:51608479-51608498 None:intergenic 65.0%
CCTGCACTGCAAGGTGGAGG+AGG - Chr3:51608476-51608495 MsG0380014224.01.T01:intron 65.0%
CGGGTTCCTGCACTGCAAGG+TGG - Chr3:51608470-51608489 MsG0380014224.01.T01:intron 65.0%
TCCGCTGTGCCTGCGCACTA+TGG - Chr3:51606675-51606694 MsG0380014224.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 51606100 51608727 51606100 ID=MsG0380014224.01;Name=MsG0380014224.01
Chr3 mRNA 51606100 51608727 51606100 ID=MsG0380014224.01.T01;Parent=MsG0380014224.01;Name=MsG0380014224.01.T01;_AED=0.46;_eAED=0.48;_QI=0|1|0.8|1|1|1|5|204|206
Chr3 exon 51606100 51606414 51606100 ID=MsG0380014224.01.T01:exon:9506;Parent=MsG0380014224.01.T01
Chr3 exon 51606973 51607042 51606973 ID=MsG0380014224.01.T01:exon:9505;Parent=MsG0380014224.01.T01
Chr3 exon 51607180 51607370 51607180 ID=MsG0380014224.01.T01:exon:9504;Parent=MsG0380014224.01.T01
Chr3 exon 51608104 51608199 51608104 ID=MsG0380014224.01.T01:exon:9503;Parent=MsG0380014224.01.T01
Chr3 exon 51608575 51608727 51608575 ID=MsG0380014224.01.T01:exon:9502;Parent=MsG0380014224.01.T01
Chr3 CDS 51608575 51608727 51608575 ID=MsG0380014224.01.T01:cds;Parent=MsG0380014224.01.T01
Chr3 CDS 51608104 51608199 51608104 ID=MsG0380014224.01.T01:cds;Parent=MsG0380014224.01.T01
Chr3 CDS 51607180 51607370 51607180 ID=MsG0380014224.01.T01:cds;Parent=MsG0380014224.01.T01
Chr3 CDS 51606973 51607042 51606973 ID=MsG0380014224.01.T01:cds;Parent=MsG0380014224.01.T01
Chr3 CDS 51606304 51606414 51606304 ID=MsG0380014224.01.T01:cds;Parent=MsG0380014224.01.T01
Chr3 three_prime_UTR 51606100 51606303 51606100 ID=MsG0380014224.01.T01:three_prime_utr;Parent=MsG0380014224.01.T01
Gene Sequence

>MsG0380014224.01.T01

ATGTTGTATTCTTTTAACGATTCTTTTCACTTGCTTTTTTCTTCAGCGCACATTCCTCTGTATTTGTATCCGTTCCTGAACACAACAAGCAAATCCAGACCTTTTGAGTACTTGAGGCTTACTAGTCTTGGTGTCATCGGTGCACTAGTGAAGGTTGATGATACTGAGGTTATTAGTTTTCTGCTTTCGACTGAAATAATTCCGCTGTGCCTGCGCACTATGGAGATGGGGAGTGAGCTCTCTAAAACGGTTGCAACATTTATTGTTCAAAAGATTCTGTTAGACGATGTGGGCTTGGACTATATTTGTACTACAGCTGAGCGCTTTTTCGCTGTTGGTCGAGTTCTTGGAAACATGGTGGCAGCTCTTGCTGAGCAACCATCATCTCGTCTGTTGAAGCATATCATTCGATGCTATCTTCGTCTGTCAGATAACCCGAGGGCTTGTGATGCATTAAGAAGCTGTCTTCCTGACATGTTAAGGGACGCTACATTCAGCAGCTGCCTTCGTGAGGACCCAACAACTAGGAAGTGGCTGCAACAACTGATTCACAATGTTGGAGGGAATCGGGTTCCTGCACTGCAAGGTGGAGGAGGTTTTGATCATCTAATGGTGAATTGA
Protein sequence

>MsG0380014224.01.T01

MLYSFNDSFHLLFSSAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLREDPTTRKWLQQLIHNVGGNRVPALQGGGGFDHLMVN*