AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014363.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014363.01.T01 MTR_3g055610 92.321 560 20 2 1 550 1 547 0.0 1018
MsG0380014363.01.T01 MTR_5g094230 58.767 519 199 3 46 550 34 551 0.0 624
MsG0380014363.01.T01 MTR_5g094230 24.290 317 200 13 50 347 356 651 2.54e-11 67.0
MsG0380014363.01.T01 MTR_5g094230 58.767 519 199 3 46 550 34 551 0.0 624
MsG0380014363.01.T01 MTR_5g094230 24.290 317 200 13 50 347 356 651 2.50e-11 67.0
MsG0380014363.01.T01 MTR_2g450160 44.633 531 264 12 45 554 189 710 8.92e-134 412
MsG0380014363.01.T01 MTR_2g450160 24.921 317 195 11 50 347 514 806 2.44e-13 73.6
MsG0380014363.01.T01 MTR_4g131380 44.190 525 263 13 45 554 48 557 1.66e-128 393
MsG0380014363.01.T01 MTR_4g131380 22.741 321 199 13 48 347 359 651 6.19e-11 65.9
MsG0380014363.01.T01 MTR_4g109600 25.552 317 209 12 49 344 45 355 7.27e-15 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014363.01.T01 AT4G26690 57.418 519 204 4 46 550 41 556 0.0 605
MsG0380014363.01.T01 AT1G66970 52.951 576 238 7 10 555 18 590 0.0 588
MsG0380014363.01.T01 AT1G66970 53.263 567 228 7 10 555 18 568 0.0 587
MsG0380014363.01.T01 AT1G66980 52.128 564 230 9 9 550 19 564 0.0 562
MsG0380014363.01.T01 AT1G66980 52.128 564 230 9 9 550 19 564 0.0 562
MsG0380014363.01.T01 AT5G55480 50.796 565 243 10 3 550 17 563 0.0 559
MsG0380014363.01.T01 AT1G66980 49.578 593 230 9 9 550 19 593 0.0 550
MsG0380014363.01.T01 AT3G20520 50.874 572 229 13 5 555 1 541 2.66e-180 526
MsG0380014363.01.T01 AT3G20520 23.511 319 205 12 51 347 339 640 1.42e-12 70.9
MsG0380014363.01.T01 AT1G66980 53.175 504 216 6 63 550 48 547 2.50e-177 530
MsG0380014363.01.T01 AT5G58170 48.664 524 248 6 46 555 38 554 1.19e-164 486
MsG0380014363.01.T01 AT5G58170 23.856 306 213 9 50 347 356 649 2.32e-14 76.6
MsG0380014363.01.T01 AT5G58050 48.473 524 249 6 46 555 38 554 1.40e-164 486
MsG0380014363.01.T01 AT5G58050 23.779 307 212 11 50 347 356 649 6.50e-13 72.0
MsG0380014363.01.T01 AT1G66970 55.914 372 148 4 199 555 4 374 8.01e-136 406
MsG0380014363.01.T01 AT1G74210 27.329 322 201 13 47 344 42 354 2.21e-17 84.7
MsG0380014363.01.T01 AT5G08030 24.528 318 215 10 47 344 57 369 6.36e-13 71.2
MsG0380014363.01.T01 AT5G08030 24.528 318 215 10 47 344 42 354 9.73e-13 70.5

Find 94 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTCTTCAGATTGCTTTGC+TGG 0.182860 3:-53509231 MsG0380014363.01.T01:intron
TAGTGAAACTCTTTCATATT+TGG 0.233787 3:+53508282 None:intergenic
TCACACCATAGTGTGATATT+TGG 0.243043 3:+53510459 None:intergenic
GCAAAACGGTATTCCATCTT+TGG 0.254209 3:+53508926 None:intergenic
TTCATCAGAACATTTGCTTC+TGG 0.269549 3:-53509667 MsG0380014363.01.T01:CDS
GAATAATCGCTGTGCGGTTT+CGG 0.275453 3:+53508853 None:intergenic
CACACCATAGTGTGATATTT+GGG 0.310128 3:+53510460 None:intergenic
ATGGCTGCAGACGGAGTTAC+TGG 0.329250 3:+53509418 None:intergenic
TTGTTTGTAGCATTGGTATC+TGG 0.332043 3:-53511625 MsG0380014363.01.T01:CDS
ATTATTCCAGAGATTCAAAA+TGG 0.351530 3:-53508837 MsG0380014363.01.T01:CDS
TCTCGTACTCCAAAGTTTGA+TGG 0.352725 3:-53510100 MsG0380014363.01.T01:CDS
AACAATGCATATTTCGCATA+AGG 0.365154 3:+53508645 None:intergenic
GAATTATATGTGGAAGTTCA+TGG 0.365174 3:-53511689 MsG0380014363.01.T01:exon
TTGCTCATTGTTTGTAGCAT+TGG 0.367415 3:-53511632 MsG0380014363.01.T01:CDS
CGCATAAGGTTTCAATATTG+AGG 0.382590 3:+53508659 None:intergenic
AGCTTTGCCAGGGTAAATAA+TGG 0.384042 3:+53510365 None:intergenic
CCATAAGTCTTGTTGGTTGT+AGG 0.387643 3:+53509712 None:intergenic
ATGCGAAATATGCATTGTTC+CGG 0.395184 3:-53508641 MsG0380014363.01.T01:CDS
TAGGAAGCTAAACTTGAATC+TGG 0.407480 3:+53510507 None:intergenic
CCTGTTCAATTGTCCAAAGA+TGG 0.409324 3:-53508939 MsG0380014363.01.T01:CDS
CCTACAACCAACAAGACTTA+TGG 0.411667 3:-53509712 MsG0380014363.01.T01:CDS
TAGAGCATTAAGGACTGCTT+TGG 0.413818 3:+53508393 None:intergenic
GTTTCTTGGACAGTTGTTCA+AGG 0.416061 3:-53510130 MsG0380014363.01.T01:intron
ATTAATTAAAATCCTAGATA+AGG 0.422231 3:-53511729 MsG0380014363.01.T01:five_prime_UTR
CCATCTTTGGACAATTGAAC+AGG 0.427949 3:+53508939 None:intergenic
AACAAAGAAAATCCTTATCT+AGG 0.434117 3:+53511717 None:intergenic
GAGTAATCCTTAGCTTTGCC+AGG 0.436941 3:+53510354 None:intergenic
AACGGTAACTTCTCTGTTGA+TGG 0.440260 3:-53509457 MsG0380014363.01.T01:CDS
CAATTTCAGTTATGATCCTA+TGG 0.445677 3:-53509503 MsG0380014363.01.T01:CDS
TACAAATTGTGATGCTTGTT+CGG 0.450818 3:-53510589 MsG0380014363.01.T01:CDS
TTAGTAAAATCATCATCAAC+AGG 0.454426 3:-53510037 MsG0380014363.01.T01:CDS
CTCAGTACTTAAGATATTCA+AGG 0.473566 3:-53508311 MsG0380014363.01.T01:CDS
TCTATTGAATTTAAGCAAAA+CGG 0.473822 3:+53508912 None:intergenic
GTTCCCCAAATATCACACTA+TGG 0.477756 3:-53510464 MsG0380014363.01.T01:CDS
AGGCCTATGGTTAAACGTTC+AGG 0.481565 3:-53510017 MsG0380014363.01.T01:intron
TAACTGAAATTGTAGCTGAA+TGG 0.482888 3:+53509514 None:intergenic
TAGTTACTTCCATCAAACTT+TGG 0.489771 3:+53510091 None:intergenic
AACTGACAAAGGATGGAGTT+GGG 0.492960 3:-53510431 MsG0380014363.01.T01:CDS
GAGTGCACCATAAGTCTTGT+TGG 0.497206 3:+53509705 None:intergenic
AAGTTTAGCTTCCTATAACT+TGG 0.497724 3:-53510499 MsG0380014363.01.T01:CDS
CTTTGCAAGAAATTCGCGTT+AGG 0.498339 3:+53509805 None:intergenic
GCATTGTCAAGCTTGATGTC+TGG 0.504165 3:+53510399 None:intergenic
AGCTTTCTTATATGCAAGAT+CGG 0.510109 3:+53508992 None:intergenic
CTATATATGGCCTGTAGACT+CGG 0.511415 3:-53509626 MsG0380014363.01.T01:CDS
AGTCCTTAATGCTCTACAAA+AGG 0.512471 3:-53508386 MsG0380014363.01.T01:CDS
ACAAGCAGAAGAAGTAGATG+AGG 0.515776 3:+53511661 None:intergenic
GCTTGTTCGGTATGCTGTGC+AGG 0.517698 3:-53510576 MsG0380014363.01.T01:CDS
GTCTCAGATGCTCATAAACA+TGG 0.520604 3:-53509574 MsG0380014363.01.T01:CDS
AATCATCATCAACAGGCCTA+TGG 0.522047 3:-53510030 MsG0380014363.01.T01:CDS
TCAGATTGCTTTGCTGGTGT+AGG 0.528337 3:-53509225 MsG0380014363.01.T01:intron
TTGTTGATTGGAATTATATG+TGG 0.528554 3:-53511699 MsG0380014363.01.T01:exon
TATTTACCCTGGCAAAGCTA+AGG 0.528922 3:-53510361 MsG0380014363.01.T01:CDS
TATAAGAAAGCTAAATCAGA+TGG 0.529060 3:-53508981 MsG0380014363.01.T01:CDS
CAGTTATGATCCTATGGCCG+AGG 0.533243 3:-53509497 MsG0380014363.01.T01:CDS
TATGCAAGATCGGTGCAAGC+TGG 0.534083 3:+53509002 None:intergenic
TGATAAAGTTCCGAGTCTAC+AGG 0.538006 3:+53509616 None:intergenic
CTTAATGCTCTACAAAAGGC+AGG 0.541031 3:-53508382 MsG0380014363.01.T01:CDS
AAAGAAAACCATCCGCGAGT+TGG 0.543267 3:+53510318 None:intergenic
TTAATCTCCGCTTTGATGCG+AGG 0.546116 3:+53508422 None:intergenic
CAACTGACAAAGGATGGAGT+TGG 0.552151 3:-53510432 MsG0380014363.01.T01:CDS
GACATTTCCATTATTTACCC+TGG 0.552444 3:-53510372 MsG0380014363.01.T01:CDS
AAAGACAGAACCTCGGCCAT+AGG 0.561593 3:+53509487 None:intergenic
CTACCTGAACGTTTAACCAT+AGG 0.566899 3:+53510014 None:intergenic
GACGCGAGAGCCTTTAGCCA+AGG 0.577644 3:+53508566 None:intergenic
CCAGAGATTCAAAATGGCAG+TGG 0.588345 3:-53508831 MsG0380014363.01.T01:CDS
AGGGTAAATAATGGAAATGT+CGG 0.588665 3:+53510374 None:intergenic
ACATGGTTCCAACTCGCGGA+TGG 0.588756 3:-53510326 MsG0380014363.01.T01:CDS
TTGTAGCATTGGTATCTGGA+TGG 0.589022 3:-53511621 MsG0380014363.01.T01:CDS
ATGCTGTGCAGGATCACCAC+CGG 0.595927 3:-53510565 MsG0380014363.01.T01:CDS
TCGCGTCTTGATCAGCATTG+AGG 0.606174 3:-53508550 MsG0380014363.01.T01:intron
TATATACATTTAGCTTGACA+TGG 0.606900 3:-53508806 MsG0380014363.01.T01:CDS
CCACCGCGCGCTATTACCAC+CGG 0.607106 3:+53510546 None:intergenic
GACTTGCAACTGACAAAGGA+TGG 0.613931 3:-53510438 MsG0380014363.01.T01:CDS
CAAGCAGAAGAAGTAGATGA+GGG 0.619125 3:+53511662 None:intergenic
AGTAATCCTTAGCTTTGCCA+GGG 0.619187 3:+53510355 None:intergenic
AACTTACTTATGGCTGCAGA+CGG 0.628036 3:+53509409 None:intergenic
GTTAACATGGTTCCAACTCG+CGG 0.631272 3:-53510330 MsG0380014363.01.T01:CDS
TGGCTGCAGACGGAGTTACT+GGG 0.633895 3:+53509419 None:intergenic
TCTGGATGGAAAACATTGCA+AGG 0.634997 3:-53511607 MsG0380014363.01.T01:intron
GTAAATAATGGAAATGTCGG+TGG 0.640634 3:+53510377 None:intergenic
CAAGGACAGAAAATCAGACA+AGG 0.647353 3:+53508584 None:intergenic
CCGCGCGCTATTACCACCGG+TGG 0.650751 3:+53510549 None:intergenic
TAAGGATTACTCAGTTAACA+TGG 0.654068 3:-53510343 MsG0380014363.01.T01:CDS
TCTCAGATGCTCATAAACAT+GGG 0.667748 3:-53509573 MsG0380014363.01.T01:CDS
CCACCGGTGGTAATAGCGCG+CGG 0.667897 3:-53510549 MsG0380014363.01.T01:CDS
GTTCTGTCTTTCATCGACAA+CGG 0.682799 3:-53509475 MsG0380014363.01.T01:CDS
TAGAAACCTGAAGACAGTGA+CGG 0.684383 3:+53509753 None:intergenic
GTGTGACTTGCAACTGACAA+AGG 0.688271 3:-53510442 MsG0380014363.01.T01:CDS
CTGCGTACCTCGCATCAAAG+CGG 0.688551 3:-53508429 MsG0380014363.01.T01:CDS
GTCGATGAAAGACAGAACCT+CGG 0.690816 3:+53509480 None:intergenic
ACACCATAGTGTGATATTTG+GGG 0.705387 3:+53510461 None:intergenic
CTGTGCAGGATCACCACCGG+TGG 0.718375 3:-53510562 MsG0380014363.01.T01:CDS
CCGGTGGTAATAGCGCGCGG+TGG 0.727355 3:-53510546 MsG0380014363.01.T01:CDS
TCTCTGGAATAATCGCTGTG+CGG 0.760055 3:+53508847 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTATAACAACATTAGAA+AGG + Chr3:53510733-53510752 None:intergenic 15.0%
!! AGAAATAATGTATAAATCAA+AGG + Chr3:53511301-53511320 None:intergenic 15.0%
!! ATAATTTGAACAAGAAAAAT+AGG + Chr3:53509745-53509764 None:intergenic 15.0%
!! CAAACTAAAAAATAAATCTA+AGG + Chr3:53508463-53508482 None:intergenic 15.0%
!! GAAAAAATAATTAAAGAGAT+AGG + Chr3:53510921-53510940 None:intergenic 15.0%
!! GAAATAATGTATAAATCAAA+GGG + Chr3:53511300-53511319 None:intergenic 15.0%
!!! AAGTTATATATGTTATTTTG+AGG - Chr3:53510856-53510875 MsG0380014363.01.T01:intron 15.0%
!! AATCCAAAATTCAAAAATCA+AGG - Chr3:53511378-53511397 MsG0380014363.01.T01:intron 20.0%
!! ACATGTAGTTAATTAAAACA+TGG + Chr3:53508488-53508507 None:intergenic 20.0%
!! ACTTTGATTATCACAAAATA+TGG - Chr3:53510955-53510974 MsG0380014363.01.T01:intron 20.0%
!! ATCCAAAATTCAAAAATCAA+GGG - Chr3:53511379-53511398 MsG0380014363.01.T01:intron 20.0%
!! TATTTCATAGTGATATAATG+AGG - Chr3:53511495-53511514 MsG0380014363.01.T01:intron 20.0%
!! TATTTGTATTGCAATTATCT+TGG - Chr3:53508578-53508597 MsG0380014363.01.T01:CDS 20.0%
!! TCTAATTCAATATAACACAA+TGG + Chr3:53508648-53508667 None:intergenic 20.0%
!! TCTATTGAATTTAAGCAAAA+CGG + Chr3:53511087-53511106 None:intergenic 20.0%
!!! ATAAATTATACCCTGTTTTT+TGG + Chr3:53510805-53510824 None:intergenic 20.0%
!!! ATTATTTTTTCATGCTAAAG+TGG - Chr3:53510930-53510949 MsG0380014363.01.T01:intron 20.0%
!!! CTTAATTGTTGTTGATATAT+GGG - Chr3:53508747-53508766 MsG0380014363.01.T01:intron 20.0%
!!! GTTTCTTAGAATTTTTTCTT+GGG - Chr3:53508833-53508852 MsG0380014363.01.T01:CDS 20.0%
!!! TATATTATTTTGTTTCACTC+AGG - Chr3:53510023-53510042 MsG0380014363.01.T01:CDS 20.0%
!!! TGATGATGATTTTACTAATT+TGG + Chr3:53509957-53509976 None:intergenic 20.0%
!!! TGTTTCTTAGAATTTTTTCT+TGG - Chr3:53508832-53508851 MsG0380014363.01.T01:CDS 20.0%
!!! TTCTTTAACAATGTTGATAA+TGG - Chr3:53509140-53509159 MsG0380014363.01.T01:intron 20.0%
! AAAACAAGTGTTTATAAGTG+AGG + Chr3:53509115-53509134 None:intergenic 25.0%
! AAAATAAATCTAAGGACCAT+AGG + Chr3:53508455-53508474 None:intergenic 25.0%
! AAACAAGTGTTTATAAGTGA+GGG + Chr3:53509114-53509133 None:intergenic 25.0%
! AACAAAGAAAATCCTTATCT+AGG + Chr3:53508282-53508301 None:intergenic 25.0%
! AAGAGATAGAAATGAATGTT+TGG - Chr3:53508667-53508686 MsG0380014363.01.T01:intron 25.0%
! ATATGATTGAATGCATGTAT+AGG + Chr3:53510676-53510695 None:intergenic 25.0%
! ATTAGTCAAAGTTTCTATTG+CGG + Chr3:53509349-53509368 None:intergenic 25.0%
! ATTATTCCAGAGATTCAAAA+TGG - Chr3:53511159-53511178 MsG0380014363.01.T01:intron 25.0%
! GAAGATACAAAACTTACTTA+TGG + Chr3:53510600-53510619 None:intergenic 25.0%
! TAGTGAAACTCTTTCATATT+TGG + Chr3:53511717-53511736 None:intergenic 25.0%
! TATAAAATTGTGTCTTGACT+CGG - Chr3:53509762-53509781 MsG0380014363.01.T01:CDS 25.0%
! TATAAGAAAGCTAAATCAGA+TGG - Chr3:53511015-53511034 MsG0380014363.01.T01:intron 25.0%
! TCAGCTGAAAAAATATCTAT+TGG - Chr3:53510155-53510174 MsG0380014363.01.T01:intron 25.0%
! TGTATACATCTTCATAGATA+AGG + Chr3:53509239-53509258 None:intergenic 25.0%
! TTAGTAAAATCATCATCAAC+AGG - Chr3:53509959-53509978 MsG0380014363.01.T01:intron 25.0%
! TTGTTCCAAAAAGCTATATA+TGG - Chr3:53510357-53510376 MsG0380014363.01.T01:CDS 25.0%
!! CAAATGTTCTGATGAATTTT+AGG + Chr3:53510325-53510344 None:intergenic 25.0%
!! GATTTTTGAATTTTGGATTC+CGG + Chr3:53511377-53511396 None:intergenic 25.0%
!! GCTTAATTGTTGTTGATATA+TGG - Chr3:53508746-53508765 MsG0380014363.01.T01:intron 25.0%
!! GTATAGAACTTGTTTAATCA+TGG + Chr3:53508719-53508738 None:intergenic 25.0%
!! TAAGGATTTTCTTTGTTGAT+TGG - Chr3:53508285-53508304 MsG0380014363.01.T01:CDS 25.0%
!! TCACTTATAAACACTTGTTT+TGG - Chr3:53509114-53509133 MsG0380014363.01.T01:intron 25.0%
!! TCATGTATGTATGAATGTTT+TGG + Chr3:53508524-53508543 None:intergenic 25.0%
!! TTCCCTTGATTTTTGAATTT+TGG + Chr3:53511384-53511403 None:intergenic 25.0%
!! TTGTTGATTGGAATTATATG+TGG - Chr3:53508297-53508316 MsG0380014363.01.T01:CDS 25.0%
!!! GAGAAGATTTTAAGACATTT+AGG - Chr3:53508778-53508797 MsG0380014363.01.T01:intron 25.0%
!!! TATATACATTTAGCTTGACA+TGG - Chr3:53511190-53511209 MsG0380014363.01.T01:intron 25.0%
AAACAAGTTCTATACAATGC+TGG - Chr3:53508724-53508743 MsG0380014363.01.T01:intron 30.0%
AACAATGCATATTTCGCATA+AGG + Chr3:53511354-53511373 None:intergenic 30.0%
AATGTCAGAATCACAAAGTT+AGG + Chr3:53510050-53510069 None:intergenic 30.0%
ACAGTTATAAACACTTGTTC+AGG - Chr3:53508901-53508920 MsG0380014363.01.T01:CDS 30.0%
AGCTTTCTTATATGCAAGAT+CGG + Chr3:53511007-53511026 None:intergenic 30.0%
ATAACAACATTAGAAAGGTG+TGG + Chr3:53510728-53510747 None:intergenic 30.0%
CAATTTCAGTTATGATCCTA+TGG - Chr3:53510493-53510512 MsG0380014363.01.T01:CDS 30.0%
CTCAGTACTTAAGATATTCA+AGG - Chr3:53511685-53511704 MsG0380014363.01.T01:CDS 30.0%
GAATTATATGTGGAAGTTCA+TGG - Chr3:53508307-53508326 MsG0380014363.01.T01:CDS 30.0%
GATACGTGGATATAAATAGT+TGG - Chr3:53508985-53509004 MsG0380014363.01.T01:CDS 30.0%
GCTTCTATTCATTCTTCTAA+TGG - Chr3:53508427-53508446 MsG0380014363.01.T01:CDS 30.0%
TAACTGAAATTGTAGCTGAA+TGG + Chr3:53510485-53510504 None:intergenic 30.0%
TAAGGATTACTCAGTTAACA+TGG - Chr3:53509653-53509672 MsG0380014363.01.T01:CDS 30.0%
TACAAATTGTGATGCTTGTT+CGG - Chr3:53509407-53509426 MsG0380014363.01.T01:intron 30.0%
TAGTTACTTCCATCAAACTT+TGG + Chr3:53509908-53509927 None:intergenic 30.0%
TGAACAAGTGTTTATAACTG+TGG + Chr3:53508902-53508921 None:intergenic 30.0%
! AAGTTTAGCTTCCTATAACT+TGG - Chr3:53509497-53509516 MsG0380014363.01.T01:CDS 30.0%
! AGGGTAAATAATGGAAATGT+CGG + Chr3:53509625-53509644 None:intergenic 30.0%
!! CATAAATTCTAAGATCCGAT+GGG + Chr3:53509043-53509062 None:intergenic 30.0%
!! CTGATGATTTTCTTGTTTCT+TGG - Chr3:53509852-53509871 MsG0380014363.01.T01:CDS 30.0%
!! TGATGAATTTTAGGTGTTTC+AGG + Chr3:53510316-53510335 None:intergenic 30.0%
ACACCATAGTGTGATATTTG+GGG + Chr3:53509538-53509557 None:intergenic 35.0%
ACGTGGATATAAATAGTTGG+TGG - Chr3:53508988-53509007 MsG0380014363.01.T01:CDS 35.0%
AGAAACTTTGACTAATGCCA+TGG - Chr3:53509353-53509372 MsG0380014363.01.T01:intron 35.0%
AGGAAGAAATGCCAAAAAAC+AGG - Chr3:53510791-53510810 MsG0380014363.01.T01:intron 35.0%
AGTCCTTAATGCTCTACAAA+AGG - Chr3:53511610-53511629 MsG0380014363.01.T01:CDS 35.0%
ATGCGAAATATGCATTGTTC+CGG - Chr3:53511355-53511374 MsG0380014363.01.T01:intron 35.0%
CACACCATAGTGTGATATTT+GGG + Chr3:53509539-53509558 None:intergenic 35.0%
CATTCTTCTAATGGTTCCTA+TGG - Chr3:53508436-53508455 MsG0380014363.01.T01:CDS 35.0%
CCATCGGATCTTAGAATTTA+TGG - Chr3:53509041-53509060 MsG0380014363.01.T01:intron 35.0%
CGCATAAGGTTTCAATATTG+AGG + Chr3:53511340-53511359 None:intergenic 35.0%
CGGATCTTAGAATTTATGGT+TGG - Chr3:53509045-53509064 MsG0380014363.01.T01:intron 35.0%
GACATTTCCATTATTTACCC+TGG - Chr3:53509624-53509643 MsG0380014363.01.T01:CDS 35.0%
GGAAGAAATGCCAAAAAACA+GGG - Chr3:53510792-53510811 MsG0380014363.01.T01:intron 35.0%
TAGGAAGCTAAACTTGAATC+TGG + Chr3:53509492-53509511 None:intergenic 35.0%
TCACACCATAGTGTGATATT+TGG + Chr3:53509540-53509559 None:intergenic 35.0%
TCTCAGATGCTCATAAACAT+GGG - Chr3:53510423-53510442 MsG0380014363.01.T01:CDS 35.0%
TGAAACATTGCGGTCAAATA+CGG - Chr3:53509314-53509333 MsG0380014363.01.T01:intron 35.0%
TTCATCAGAACATTTGCTTC+TGG - Chr3:53510329-53510348 MsG0380014363.01.T01:CDS 35.0%
TTGCTCATTGTTTGTAGCAT+TGG - Chr3:53508364-53508383 MsG0380014363.01.T01:CDS 35.0%
! ACAGGCCATATATAGCTTTT+TGG + Chr3:53510365-53510384 None:intergenic 35.0%
! AGCTTTTAGTGCCAAGTTAT+AGG + Chr3:53509511-53509530 None:intergenic 35.0%
! ATCAGTGCAGAAATTTTCAC+AGG + Chr3:53509837-53509856 None:intergenic 35.0%
! GTAAATAATGGAAATGTCGG+TGG + Chr3:53509622-53509641 None:intergenic 35.0%
!! ACCTTATAAACCGGTTTTGT+GGG + Chr3:53509083-53509102 None:intergenic 35.0%
!! CCATAAATTCTAAGATCCGA+TGG + Chr3:53509044-53509063 None:intergenic 35.0%
!! CCTGATATTCTGAAACATTG+CGG - Chr3:53509304-53509323 MsG0380014363.01.T01:intron 35.0%
!! TTGTTTGTAGCATTGGTATC+TGG - Chr3:53508371-53508390 MsG0380014363.01.T01:CDS 35.0%
AAAAAACCGTCACTGTCTTC+AGG - Chr3:53510237-53510256 MsG0380014363.01.T01:intron 40.0%
AAAGTCCTTAAGTCACGTGT+CGG - Chr3:53509266-53509285 MsG0380014363.01.T01:intron 40.0%
AACGGTAACTTCTCTGTTGA+TGG - Chr3:53510539-53510558 MsG0380014363.01.T01:CDS 40.0%
AACTGACAAAGGATGGAGTT+GGG - Chr3:53509565-53509584 MsG0380014363.01.T01:CDS 40.0%
AACTTACTTATGGCTGCAGA+CGG + Chr3:53510590-53510609 None:intergenic 40.0%
AATCATCATCAACAGGCCTA+TGG - Chr3:53509966-53509985 MsG0380014363.01.T01:intron 40.0%
ACAAGCAGAAGAAGTAGATG+AGG + Chr3:53508338-53508357 None:intergenic 40.0%
AGCTTTGCCAGGGTAAATAA+TGG + Chr3:53509634-53509653 None:intergenic 40.0%
ATCACAAAATATGGAGCGAG+TGG - Chr3:53510964-53510983 MsG0380014363.01.T01:intron 40.0%
CAAGCAGAAGAAGTAGATGA+GGG + Chr3:53508337-53508356 None:intergenic 40.0%
CAAGGACAGAAAATCAGACA+AGG + Chr3:53511415-53511434 None:intergenic 40.0%
CAGGTAGTGACGAAATGAAA+TGG - Chr3:53509998-53510017 MsG0380014363.01.T01:intron 40.0%
CCATCTTTGGACAATTGAAC+AGG + Chr3:53511060-53511079 None:intergenic 40.0%
CCGCAATGTTTCAGAATATC+AGG + Chr3:53509307-53509326 None:intergenic 40.0%
CCTACAACCAACAAGACTTA+TGG - Chr3:53510284-53510303 MsG0380014363.01.T01:CDS 40.0%
CCTGTTCAATTGTCCAAAGA+TGG - Chr3:53511057-53511076 MsG0380014363.01.T01:intron 40.0%
CTAACACAACCTGACAAAAC+CGG - Chr3:53508857-53508876 MsG0380014363.01.T01:CDS 40.0%
CTACCTGAACGTTTAACCAT+AGG + Chr3:53509985-53510004 None:intergenic 40.0%
CTATATATGGCCTGTAGACT+CGG - Chr3:53510370-53510389 MsG0380014363.01.T01:CDS 40.0%
CTTAATGCTCTACAAAAGGC+AGG - Chr3:53511614-53511633 MsG0380014363.01.T01:CDS 40.0%
CTTTGCAAGAAATTCGCGTT+AGG + Chr3:53510194-53510213 None:intergenic 40.0%
GCAAAACGGTATTCCATCTT+TGG + Chr3:53511073-53511092 None:intergenic 40.0%
GCAATCCTCACCTTATAAAC+CGG + Chr3:53509092-53509111 None:intergenic 40.0%
GGTTATGATTGCATAGAGAC+AGG - Chr3:53508799-53508818 MsG0380014363.01.T01:CDS 40.0%
GTATCAAGCCCAATAGTGTT+GGG + Chr3:53508970-53508989 None:intergenic 40.0%
GTCTCAGATGCTCATAAACA+TGG - Chr3:53510422-53510441 MsG0380014363.01.T01:CDS 40.0%
GTGTGTTAAAGAGTCCATAG+TGG + Chr3:53508938-53508957 None:intergenic 40.0%
GTTCCCCAAATATCACACTA+TGG - Chr3:53509532-53509551 MsG0380014363.01.T01:CDS 40.0%
GTTCTGTCTTTCATCGACAA+CGG - Chr3:53510521-53510540 MsG0380014363.01.T01:CDS 40.0%
GTTTCTTGGACAGTTGTTCA+AGG - Chr3:53509866-53509885 MsG0380014363.01.T01:CDS 40.0%
TAGAAACCTGAAGACAGTGA+CGG + Chr3:53510246-53510265 None:intergenic 40.0%
TATTTACCCTGGCAAAGCTA+AGG - Chr3:53509635-53509654 MsG0380014363.01.T01:CDS 40.0%
TCTCGTACTCCAAAGTTTGA+TGG - Chr3:53509896-53509915 MsG0380014363.01.T01:CDS 40.0%
TCTGGATGGAAAACATTGCA+AGG - Chr3:53508389-53508408 MsG0380014363.01.T01:CDS 40.0%
TGATAAAGTTCCGAGTCTAC+AGG + Chr3:53510383-53510402 None:intergenic 40.0%
TGCTATCAAGTTTCCGCTAT+CGG + Chr3:53509015-53509034 None:intergenic 40.0%
! CAAAACCGGTTTATAAGGTG+AGG - Chr3:53509084-53509103 MsG0380014363.01.T01:intron 40.0%
! CTTGTCTGATTTTCTGTCCT+TGG - Chr3:53511413-53511432 MsG0380014363.01.T01:intron 40.0%
! GATTTTCTGTCCTTGGCTAA+AGG - Chr3:53511420-53511439 MsG0380014363.01.T01:intron 40.0%
! TAGAGCATTAAGGACTGCTT+TGG + Chr3:53511606-53511625 None:intergenic 40.0%
!! AGTAATCCTTAGCTTTGCCA+GGG + Chr3:53509644-53509663 None:intergenic 40.0%
!! CACCTTATAAACCGGTTTTG+TGG + Chr3:53509084-53509103 None:intergenic 40.0%
!! CCATAAGTCTTGTTGGTTGT+AGG + Chr3:53510287-53510306 None:intergenic 40.0%
!! CCTTATAAACCGGTTTTGTG+GGG + Chr3:53509082-53509101 None:intergenic 40.0%
!! CTGCCTTTTGTAGAGCATTA+AGG + Chr3:53511616-53511635 None:intergenic 40.0%
!! CTTATAAACCGGTTTTGTGG+GGG + Chr3:53509081-53509100 None:intergenic 40.0%
!! TTGTAGCATTGGTATCTGGA+TGG - Chr3:53508375-53508394 MsG0380014363.01.T01:CDS 40.0%
AAAGAAAACCATCCGCGAGT+TGG + Chr3:53509681-53509700 None:intergenic 45.0%
ACACTATTGGGCTTGATACG+TGG - Chr3:53508971-53508990 MsG0380014363.01.T01:CDS 45.0%
ACAGTCTACACCTCATAAGC+CGG + Chr3:53508879-53508898 None:intergenic 45.0%
AGGCCTATGGTTAAACGTTC+AGG - Chr3:53509979-53509998 MsG0380014363.01.T01:intron 45.0%
CAACTGACAAAGGATGGAGT+TGG - Chr3:53509564-53509583 MsG0380014363.01.T01:CDS 45.0%
CCAGAGATTCAAAATGGCAG+TGG - Chr3:53511165-53511184 MsG0380014363.01.T01:intron 45.0%
CCAGCAAAGCAATCTGAAGA+AGG + Chr3:53510768-53510787 None:intergenic 45.0%
CCTTCTTCAGATTGCTTTGC+TGG - Chr3:53510765-53510784 MsG0380014363.01.T01:intron 45.0%
CGTATCAAGCCCAATAGTGT+TGG + Chr3:53508971-53508990 None:intergenic 45.0%
GAATAATCGCTGTGCGGTTT+CGG + Chr3:53511146-53511165 None:intergenic 45.0%
GACTTGCAACTGACAAAGGA+TGG - Chr3:53509558-53509577 MsG0380014363.01.T01:CDS 45.0%
GCATTGTCAAGCTTGATGTC+TGG + Chr3:53509600-53509619 None:intergenic 45.0%
GTCGATGAAAGACAGAACCT+CGG + Chr3:53510519-53510538 None:intergenic 45.0%
GTTAACATGGTTCCAACTCG+CGG - Chr3:53509666-53509685 MsG0380014363.01.T01:CDS 45.0%
TCAGATTGCTTTGCTGGTGT+AGG - Chr3:53510771-53510790 MsG0380014363.01.T01:intron 45.0%
TTAATCTCCGCTTTGATGCG+AGG + Chr3:53511577-53511596 None:intergenic 45.0%
! AGGTCTTGTCTCAACCACTA+TGG - Chr3:53508921-53508940 MsG0380014363.01.T01:CDS 45.0%
! CCCCACAAAACCGGTTTATA+AGG - Chr3:53509079-53509098 MsG0380014363.01.T01:intron 45.0%
! GAGTGCACCATAAGTCTTGT+TGG + Chr3:53510294-53510313 None:intergenic 45.0%
! GTGTGACTTGCAACTGACAA+AGG - Chr3:53509554-53509573 MsG0380014363.01.T01:CDS 45.0%
!! AATAGTTGGTGGTCCGATAG+CGG - Chr3:53508999-53509018 MsG0380014363.01.T01:CDS 45.0%
!! CGGTTTTGTCAGGTTGTGTT+AGG + Chr3:53508859-53508878 None:intergenic 45.0%
!! GAGTAATCCTTAGCTTTGCC+AGG + Chr3:53509645-53509664 None:intergenic 45.0%
!! GATAGCGGAAACTTGATAGC+AGG - Chr3:53509014-53509033 MsG0380014363.01.T01:CDS 45.0%
!! TCTCTGGAATAATCGCTGTG+CGG + Chr3:53511152-53511171 None:intergenic 45.0%
!!! CCACTGCCATTTTGAATCTC+TGG + Chr3:53511168-53511187 None:intergenic 45.0%
AAAGACAGAACCTCGGCCAT+AGG + Chr3:53510512-53510531 None:intergenic 50.0%
CAGTTATGATCCTATGGCCG+AGG - Chr3:53510499-53510518 MsG0380014363.01.T01:CDS 50.0%
GCGCGACTGTAATTTAGCCA+TGG + Chr3:53509373-53509392 None:intergenic 50.0%
GTAACACACCCCCACAAAAC+CGG - Chr3:53509070-53509089 MsG0380014363.01.T01:intron 50.0%
TATGCAAGATCGGTGCAAGC+TGG + Chr3:53510997-53511016 None:intergenic 50.0%
TCGCGTCTTGATCAGCATTG+AGG - Chr3:53511446-53511465 MsG0380014363.01.T01:intron 50.0%
TGACACCGACACGTGACTTA+AGG + Chr3:53509274-53509293 None:intergenic 50.0%
! CCTGACAAAACCGGCTTATG+AGG - Chr3:53508866-53508885 MsG0380014363.01.T01:CDS 50.0%
! CTTGATAGCAGGTGACCCAT+CGG - Chr3:53509025-53509044 MsG0380014363.01.T01:intron 50.0%
!! CCTCATAAGCCGGTTTTGTC+AGG + Chr3:53508869-53508888 None:intergenic 50.0%
ACATGGTTCCAACTCGCGGA+TGG - Chr3:53509670-53509689 MsG0380014363.01.T01:CDS 55.0%
ACCGTCACGCCCAACACTAT+TGG - Chr3:53508958-53508977 MsG0380014363.01.T01:CDS 55.0%
ATGCTGTGCAGGATCACCAC+CGG - Chr3:53509431-53509450 MsG0380014363.01.T01:CDS 55.0%
ATGGCTGCAGACGGAGTTAC+TGG + Chr3:53510581-53510600 None:intergenic 55.0%
CCGTCACGCCCAACACTATT+GGG - Chr3:53508959-53508978 MsG0380014363.01.T01:CDS 55.0%
CTGCGTACCTCGCATCAAAG+CGG - Chr3:53511567-53511586 MsG0380014363.01.T01:intron 55.0%
GCTTGTTCGGTATGCTGTGC+AGG - Chr3:53509420-53509439 MsG0380014363.01.T01:CDS 55.0%
TGGCTGCAGACGGAGTTACT+GGG + Chr3:53510580-53510599 None:intergenic 55.0%
! CCCAATAGTGTTGGGCGTGA+CGG + Chr3:53508962-53508981 None:intergenic 55.0%
!! ATAGCGCGCGGTGGATTTTC+AGG - Chr3:53509459-53509478 MsG0380014363.01.T01:CDS 55.0%
GACGCGAGAGCCTTTAGCCA+AGG + Chr3:53511433-53511452 None:intergenic 60.0%
CCACCGCGCGCTATTACCAC+CGG + Chr3:53509453-53509472 None:intergenic 65.0%
CCACCGGTGGTAATAGCGCG+CGG - Chr3:53509447-53509466 MsG0380014363.01.T01:CDS 65.0%
CTGTGCAGGATCACCACCGG+TGG - Chr3:53509434-53509453 MsG0380014363.01.T01:CDS 65.0%
CCGCGCGCTATTACCACCGG+TGG + Chr3:53509450-53509469 None:intergenic 70.0%
CCGGTGGTAATAGCGCGCGG+TGG - Chr3:53509450-53509469 MsG0380014363.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 53508270 53511748 53508270 ID=MsG0380014363.01;Name=MsG0380014363.01
Chr3 mRNA 53508270 53511748 53508270 ID=MsG0380014363.01.T01;Parent=MsG0380014363.01;Name=MsG0380014363.01.T01;_AED=0.42;_eAED=0.43;_QI=44|0.71|0.62|1|0.85|0.75|8|0|555
Chr3 exon 53508270 53508455 53508270 ID=MsG0380014363.01.T01:exon:10681;Parent=MsG0380014363.01.T01
Chr3 exon 53508551 53508681 53508551 ID=MsG0380014363.01.T01:exon:10680;Parent=MsG0380014363.01.T01
Chr3 exon 53508784 53509038 53508784 ID=MsG0380014363.01.T01:exon:10679;Parent=MsG0380014363.01.T01
Chr3 exon 53509205 53509243 53509205 ID=MsG0380014363.01.T01:exon:10678;Parent=MsG0380014363.01.T01
Chr3 exon 53509416 53509920 53509416 ID=MsG0380014363.01.T01:exon:10677;Parent=MsG0380014363.01.T01
Chr3 exon 53510018 53510139 53510018 ID=MsG0380014363.01.T01:exon:10676;Parent=MsG0380014363.01.T01
Chr3 exon 53510283 53510615 53510283 ID=MsG0380014363.01.T01:exon:10675;Parent=MsG0380014363.01.T01
Chr3 exon 53511608 53511748 53511608 ID=MsG0380014363.01.T01:exon:10674;Parent=MsG0380014363.01.T01
Chr3 five_prime_UTR 53511705 53511748 53511705 ID=MsG0380014363.01.T01:five_prime_utr;Parent=MsG0380014363.01.T01
Chr3 CDS 53511608 53511704 53511608 ID=MsG0380014363.01.T01:cds;Parent=MsG0380014363.01.T01
Chr3 CDS 53510283 53510615 53510283 ID=MsG0380014363.01.T01:cds;Parent=MsG0380014363.01.T01
Chr3 CDS 53510018 53510139 53510018 ID=MsG0380014363.01.T01:cds;Parent=MsG0380014363.01.T01
Chr3 CDS 53509416 53509920 53509416 ID=MsG0380014363.01.T01:cds;Parent=MsG0380014363.01.T01
Chr3 CDS 53509205 53509243 53509205 ID=MsG0380014363.01.T01:cds;Parent=MsG0380014363.01.T01
Chr3 CDS 53508784 53509038 53508784 ID=MsG0380014363.01.T01:cds;Parent=MsG0380014363.01.T01
Chr3 CDS 53508551 53508681 53508551 ID=MsG0380014363.01.T01:cds;Parent=MsG0380014363.01.T01
Chr3 CDS 53508270 53508455 53508270 ID=MsG0380014363.01.T01:cds;Parent=MsG0380014363.01.T01
Gene Sequence

>MsG0380014363.01.T01

ATGTGGAAGTTCATGGCTCTCCCTCATCTACTTCTTCTGCTTGTTCTTCATTGCTCATTGTTTGTAGCATTGGTATCTGGATGGAAAACATTGCAAGATTGTACAAATTGTGATGCTTGTTCGGTATGCTGTGCAGGATCACCACCGGTGGTAATAGCGCGCGGTGGATTTTCAGGAATATTTCCAGATTCAAGTTTAGCTTCCTATAACTTGGCACTAAAAGCTAGTTCCCCAAATATCACACTATGGTGTGACTTGCAACTGACAAAGGATGGAGTTGGGATTTGTTTTCCAGACATCAAGCTTGACAATGCCACCGACATTTCCATTATTTACCCTGGCAAAGCTAAGGATTACTCAGTTAACATGGTTCCAACTCGCGGATGGTTTTCTTTTGATTTCAGTTTCAAAGAACTACAAATAGTCTCGCTTGTTCAAGGAGTGTATTCTCGTACTCCAAAGTTTGATGGAAGTAACTATTACATTCTCAGTGTTGAAAATGTCGCCAAATTAGTAAAATCATCATCAACAGGCCTATGGTTAAACGTTCAGCATGATACATTCTACAAGCATCACAATTTGAGTGTAGAGAAATATCTACACTCTCTTTCAGCTGAAAAAATATCTATTGGTTACATCTCATCGCCTAACGCGAATTTCTTGCAAAGAGTAAGAACAAAATCAAGTCTTAAAAAAACCGTCACTGTCTTCAGGTTTCTAGATCAATATAAAATTGAACCTACAACCAACAAGACTTATGGTGCACTCCTGAAACACCTAAAATTCATCAGAACATTTGCTTCTGGAATTCTTGTTCCAAAAAGCTATATATGGCCTGTAGACTCGGAACTTTATCAACATCAACATACTTCTCTTGTCTCAGATGCTCATAAACATGGGCTGAAAGTTTTTGTTTCAGATATTGTTAATGATGTTCCATTCAGCTACAATTTCAGTTATGATCCTATGGCCGAGGTTCTGTCTTTCATCGACAACGGTAACTTCTCTGTTGATGGTGTTCTGTCTGATTTCCCAGTAACTCCGTCTGCAGCCATAAATTGCTTTGCTGGTGTAGGAAGAAATGCCAAAAAACAGGCGAGTGGCGACTATCCAGCTTGCACCGATCTTGCATATAAGAAAGCTAAATCAGATGGAGCAGATGTAATTGATTGTCCTGTTCAATTGTCCAAAGATGGAATACCGTTTTGCTTAAATTCAATAGATCTTTCAACGAGTACAACAGTTGCTGATACAAAATTCCGAAACCGCACAGCGATTATTCCAGAGATTCAAAATGGCAGTGGCATATATACATTTAGCTTGACATGGAATGAAATCAAAACATTGACTCCCTCAATATTGAAACCTTATGCGAAATATGCATTGTTCCGGAATCCAAAATTCAAAAATCAAGGGAAATTAGTAACCTTGTCTGATTTTCTGTCCTTGGCTAAAGGCTCTCGCGTCTTGATCAGCATTGAGAATGCTGCGTACCTCGCATCAAAGCGGAGATTAAGCGTGACCAAAGCAGTCCTTAATGCTCTACAAAAGGCAGGTTACGATAAACAAAAATCTCGTAAAGTCATGATTCAGTCAACACACAGCTCAGTACTTAAGATATTCAAGGACAAATCCAAATATGAAAGAGTTTCACTACTACAGAAATGA
Protein sequence

>MsG0380014363.01.T01

MWKFMALPHLLLLLVLHCSLFVALVSGWKTLQDCTNCDACSVCCAGSPPVVIARGGFSGIFPDSSLASYNLALKASSPNITLWCDLQLTKDGVGICFPDIKLDNATDISIIYPGKAKDYSVNMVPTRGWFSFDFSFKELQIVSLVQGVYSRTPKFDGSNYYILSVENVAKLVKSSSTGLWLNVQHDTFYKHHNLSVEKYLHSLSAEKISIGYISSPNANFLQRVRTKSSLKKTVTVFRFLDQYKIEPTTNKTYGALLKHLKFIRTFASGILVPKSYIWPVDSELYQHQHTSLVSDAHKHGLKVFVSDIVNDVPFSYNFSYDPMAEVLSFIDNGNFSVDGVLSDFPVTPSAAINCFAGVGRNAKKQASGDYPACTDLAYKKAKSDGADVIDCPVQLSKDGIPFCLNSIDLSTSTTVADTKFRNRTAIIPEIQNGSGIYTFSLTWNEIKTLTPSILKPYAKYALFRNPKFKNQGKLVTLSDFLSLAKGSRVLISIENAAYLASKRRLSVTKAVLNALQKAGYDKQKSRKVMIQSTHSSVLKIFKDKSKYERVSLLQK*