Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014601.01.T01 | RHN67465.1 | 84.327 | 453 | 22 | 1 | 1 | 453 | 1 | 404 | 0 | 786 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014601.01.T01 | F4I1X0 | 59.091 | 154 | 63 | 0 | 16 | 169 | 63 | 216 | 1.24E-61 | 211 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014601.01.T01 | A0A396IU19 | 84.327 | 453 | 22 | 1 | 1 | 453 | 1 | 404 | 0.0 | 786 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0380014601.01 | MsG0480023699.01 | 0.801949 | 7.073171e-49 | 3.421773e-46 |
| MsG0380014601.01 | MsG0780039700.01 | 0.838047 | 3.625655e-57 | 4.798964e-54 |
| MsG0380014601.01 | MsG0780041287.01 | 0.802121 | 6.518783e-49 | 3.167488e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014601.01.T01 | MTR_3g061070 | 83.790 | 438 | 22 | 1 | 16 | 453 | 79 | 467 | 0.0 | 751 |
| MsG0380014601.01.T01 | MTR_6g082260 | 48.667 | 150 | 76 | 1 | 21 | 169 | 53 | 202 | 7.94e-43 | 150 |
| MsG0380014601.01.T01 | MTR_6g082310 | 48.366 | 153 | 78 | 1 | 18 | 169 | 50 | 202 | 9.31e-42 | 147 |
| MsG0380014601.01.T01 | MTR_5g093740 | 45.000 | 160 | 87 | 1 | 18 | 177 | 54 | 212 | 2.10e-41 | 154 |
| MsG0380014601.01.T01 | MTR_5g093740 | 42.667 | 150 | 79 | 2 | 22 | 169 | 307 | 451 | 3.84e-29 | 120 |
| MsG0380014601.01.T01 | MTR_6g082340 | 45.638 | 149 | 81 | 0 | 21 | 169 | 53 | 201 | 1.92e-39 | 141 |
| MsG0380014601.01.T01 | MTR_2g027540 | 40.645 | 155 | 91 | 1 | 16 | 169 | 85 | 239 | 1.01e-32 | 124 |
| MsG0380014601.01.T01 | MTR_2g027540 | 34.194 | 155 | 77 | 2 | 16 | 169 | 85 | 215 | 1.47e-20 | 90.5 |
| MsG0380014601.01.T01 | MTR_3g061060 | 46.078 | 102 | 28 | 1 | 71 | 172 | 16 | 90 | 3.11e-19 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014601.01.T01 | AT1G55790 | 59.091 | 154 | 63 | 0 | 16 | 169 | 63 | 216 | 3.14e-64 | 213 |
| MsG0380014601.01.T01 | AT4G26485 | 46.497 | 157 | 81 | 2 | 16 | 169 | 50 | 206 | 8.00e-40 | 142 |
| MsG0380014601.01.T01 | AT5G56060 | 44.966 | 149 | 78 | 3 | 15 | 161 | 5 | 151 | 2.58e-37 | 134 |
| MsG0380014601.01.T01 | AT5G56075 | 38.854 | 157 | 76 | 3 | 17 | 169 | 110 | 250 | 6.74e-28 | 112 |
| MsG0380014601.01.T01 | AT1G55803 | 69.355 | 62 | 19 | 0 | 16 | 77 | 61 | 122 | 9.01e-27 | 104 |
| MsG0380014601.01.T01 | AT1G55800 | 54.762 | 84 | 38 | 0 | 86 | 169 | 11 | 94 | 1.77e-26 | 107 |
| MsG0380014601.01.T01 | AT5G25030 | 37.179 | 156 | 81 | 4 | 16 | 169 | 51 | 191 | 2.83e-26 | 105 |
| MsG0380014601.01.T01 | AT2G11045 | 35.032 | 157 | 63 | 4 | 16 | 169 | 14 | 134 | 3.58e-17 | 78.6 |
Find 97 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTCTTCTAAATTTGATT+TGG | 0.284080 | 3:-57044658 | None:intergenic |
| AAGTCAAATTCTGATCTAAT+TGG | 0.285572 | 3:-57045600 | None:intergenic |
| CTACACCTCCTTTCAATAAC+TGG | 0.300700 | 3:+57045208 | MsG0380014601.01.T01:CDS |
| CATTTCTGTAAGGTTCTTCT+TGG | 0.305037 | 3:-57046109 | None:intergenic |
| CTCTGAATCTCTTCATGAAA+TGG | 0.328925 | 3:-57045459 | None:intergenic |
| TCTTTGAAAGTGTTGAAATC+TGG | 0.336142 | 3:+57046448 | MsG0380014601.01.T01:three_prime_UTR |
| TCAAAATTTGACTTGAGAAA+TGG | 0.339756 | 3:+57045756 | MsG0380014601.01.T01:CDS |
| TTGGAAATAGCTTGGCCTCT+TGG | 0.366727 | 3:-57046090 | None:intergenic |
| TCAGAATTTGACTTGAGAAA+TGG | 0.370628 | 3:+57045609 | MsG0380014601.01.T01:CDS |
| ATGCATATGGATCTCGTGTT+TGG | 0.380034 | 3:+57045123 | MsG0380014601.01.T01:CDS |
| CTAATTGGTTCATTCAACTT+TGG | 0.381796 | 3:-57045585 | None:intergenic |
| CTAATTGGTTCATTCAACTT+TGG | 0.381796 | 3:-57045732 | None:intergenic |
| CCTCGTTTGTTGTTGTAACC+TGG | 0.390809 | 3:-57045303 | None:intergenic |
| CTATATGATTTCCCCTCAAA+TGG | 0.396400 | 3:-57045410 | None:intergenic |
| TCTTAGAAGAACAATGGATA+TGG | 0.401561 | 3:+57045971 | MsG0380014601.01.T01:CDS |
| GTGAATTTATAGGATGCATA+TGG | 0.407557 | 3:+57045110 | MsG0380014601.01.T01:intron |
| GGAAGATAGTTGAGATCAAC+TGG | 0.409488 | 3:-57045501 | None:intergenic |
| AGAATGCATGTCATATGCTT+AGG | 0.409636 | 3:+57045154 | MsG0380014601.01.T01:CDS |
| TTTAGAAGAATTGCAGAAGC+TGG | 0.410090 | 3:+57044668 | MsG0380014601.01.T01:CDS |
| TCATGTTGTCTTCCTTCCTA+TGG | 0.420442 | 3:-57044797 | None:intergenic |
| ATATCCATTGTTCTTCTAAG+AGG | 0.427874 | 3:-57045969 | None:intergenic |
| GGCATCTGAGCATTTCTGTA+AGG | 0.432658 | 3:-57046119 | None:intergenic |
| ATCACCTCATCTACATGAAC+AGG | 0.435847 | 3:-57044618 | None:intergenic |
| GAGGCTCTGTTAGAGAATAT+CGG | 0.436708 | 3:-57045950 | None:intergenic |
| CTGCACTTACCAAGAGGAAA+GGG | 0.454913 | 3:-57045348 | None:intergenic |
| TTCCTTCAAAGGCTTTGTAT+TGG | 0.454978 | 3:-57046031 | None:intergenic |
| CTCTGCAAATCAAAATGCTC+TGG | 0.458866 | 3:+57044571 | None:intergenic |
| GCATAATAGCATGCTGCAAA+AGG | 0.460891 | 3:-57046389 | None:intergenic |
| TTCAACAAGGAAGATTATCC+AGG | 0.465047 | 3:+57045285 | MsG0380014601.01.T01:CDS |
| CATTGTCAGAAAGCTTTGCT+TGG | 0.465996 | 3:-57045247 | None:intergenic |
| CAATTAGTTGGCGTTGGCCA+CGG | 0.466703 | 3:-57045927 | None:intergenic |
| TGTGATGACCCCTTTCCTCT+TGG | 0.467619 | 3:+57045339 | MsG0380014601.01.T01:CDS |
| TGCTTATGCTATAAGAAAGT+AGG | 0.469815 | 3:+57046409 | MsG0380014601.01.T01:three_prime_UTR |
| TACCAATACAAAGCCTTTGA+AGG | 0.469821 | 3:+57046029 | MsG0380014601.01.T01:CDS |
| AGAGAATATCGGCAATTAGT+TGG | 0.470407 | 3:-57045939 | None:intergenic |
| GACACAAGACACTCGAAGAT+TGG | 0.476240 | 3:+57045872 | MsG0380014601.01.T01:CDS |
| ATAACTTGAGCTTCCTTCAA+AGG | 0.482829 | 3:-57046042 | None:intergenic |
| AATATGTTGATGCAATATAG+AGG | 0.484862 | 3:+57046238 | MsG0380014601.01.T01:exon |
| ATATTCAACTTTCCTCATGC+AGG | 0.489206 | 3:+57044771 | MsG0380014601.01.T01:CDS |
| AACAGCAATGAAGTTTCATC+CGG | 0.499828 | 3:+57044719 | MsG0380014601.01.T01:CDS |
| CTCCTATGTCACTTGGTGCT+AGG | 0.500523 | 3:+57045997 | MsG0380014601.01.T01:CDS |
| GAATGCATGTCATATGCTTA+GGG | 0.503530 | 3:+57045155 | MsG0380014601.01.T01:CDS |
| GGTTCTTCTTGGAAATAGCT+TGG | 0.504286 | 3:-57046098 | None:intergenic |
| CTGGGAGCATACGTGTTACA+TGG | 0.511436 | 3:+57044687 | MsG0380014601.01.T01:CDS |
| GGATGATTGCACTGTGTGAA+TGG | 0.514758 | 3:+57046260 | MsG0380014601.01.T01:three_prime_UTR |
| TAGTTGAGATCAACTGGAGC+TGG | 0.515891 | 3:-57045495 | None:intergenic |
| ATGTCACTTGGTGCTAGGAA+TGG | 0.519422 | 3:+57046002 | MsG0380014601.01.T01:CDS |
| CTAAGCTTGAGTTGTGAAGC+TGG | 0.520841 | 3:+57046334 | MsG0380014601.01.T01:three_prime_UTR |
| TTTGGAAATAAACTTGTTCG+AGG | 0.521347 | 3:-57045522 | None:intergenic |
| TCAATGTTCCAGTTATTGAA+AGG | 0.524267 | 3:-57045216 | None:intergenic |
| TTAGAAGAATTGCAGAAGCT+GGG | 0.525297 | 3:+57044669 | MsG0380014601.01.T01:CDS |
| ATGGATACAATCCGATCTCA+AGG | 0.528394 | 3:+57045628 | MsG0380014601.01.T01:CDS |
| TTGTTGATCTCCCTTGAGAT+CGG | 0.534047 | 3:-57045639 | None:intergenic |
| TCGAAGATTGGTACCACCAA+TGG | 0.536783 | 3:+57045884 | MsG0380014601.01.T01:CDS |
| AGGGTTGCTTGTTCTGCTGA+CGG | 0.542929 | 3:+57045681 | MsG0380014601.01.T01:CDS |
| ATGGCTCCTCCTATGTCACT+TGG | 0.548812 | 3:+57045990 | MsG0380014601.01.T01:CDS |
| TCTCTGCTGAAAACTCTCCT+AGG | 0.552222 | 3:-57046197 | None:intergenic |
| TATCGGCAATTAGTTGGCGT+TGG | 0.553586 | 3:-57045933 | None:intergenic |
| AATGTTGCTTGTTCTGCTGA+CGG | 0.554019 | 3:+57045828 | MsG0380014601.01.T01:CDS |
| AACAATGTGACAGAAATACT+TGG | 0.556203 | 3:+57045657 | MsG0380014601.01.T01:CDS |
| GGTACAATGCTGAAGTGCCT+AGG | 0.572648 | 3:+57046180 | MsG0380014601.01.T01:CDS |
| CAAGCAAAGCTTTCTGACAA+TGG | 0.574017 | 3:+57045248 | MsG0380014601.01.T01:CDS |
| TCATGCAGGTTTCCATAGGA+AGG | 0.577731 | 3:+57044785 | MsG0380014601.01.T01:CDS |
| GATTGCAATGACTCCATTGG+TGG | 0.580976 | 3:-57045897 | None:intergenic |
| CATTGCAATCTCTGCAACCG+TGG | 0.581815 | 3:+57045910 | MsG0380014601.01.T01:CDS |
| TTCCTCATGCAGGTTTCCAT+AGG | 0.587250 | 3:+57044781 | MsG0380014601.01.T01:CDS |
| ATGTGACAGAAATACTTGGA+AGG | 0.589645 | 3:+57045661 | MsG0380014601.01.T01:CDS |
| TGTCATATGCTTAGGGCCAA+TGG | 0.590266 | 3:+57045162 | MsG0380014601.01.T01:CDS |
| AGAGATTGCAATGACTCCAT+TGG | 0.590872 | 3:-57045900 | None:intergenic |
| TTCCTAGCACCAAGTGACAT+AGG | 0.592858 | 3:-57045999 | None:intergenic |
| TTTGGAAAGTGATTTGTCTG+AGG | 0.595111 | 3:-57045567 | None:intergenic |
| TTTGGAAAGTGATTTGTCTG+AGG | 0.595111 | 3:-57045714 | None:intergenic |
| GCTGCACTTACCAAGAGGAA+AGG | 0.599005 | 3:-57045349 | None:intergenic |
| AGCATACGTGTTACATGGAG+TGG | 0.600625 | 3:+57044692 | MsG0380014601.01.T01:CDS |
| TGGATACAACACAATGTCAC+GGG | 0.606972 | 3:+57045776 | MsG0380014601.01.T01:CDS |
| ACCTCATCTACATGAACAGG+AGG | 0.608114 | 3:-57044615 | None:intergenic |
| TGTGACAGAAATACTTGGAA+GGG | 0.609887 | 3:+57045662 | MsG0380014601.01.T01:CDS |
| CCCTCCTGTTCATGTAGATG+AGG | 0.616310 | 3:+57044614 | MsG0380014601.01.T01:CDS |
| AGAGCCTCTTAGAAGAACAA+TGG | 0.616981 | 3:+57045965 | MsG0380014601.01.T01:CDS |
| ATGTTCCAGTTATTGAAAGG+AGG | 0.620175 | 3:-57045213 | None:intergenic |
| GCTATATCAAAAGAGTGACT+TGG | 0.620725 | 3:-57046140 | None:intergenic |
| AACAATGTGACAGAAATACA+TGG | 0.624433 | 3:+57045804 | MsG0380014601.01.T01:CDS |
| CGACTGCATTGATTTCAACA+AGG | 0.624563 | 3:+57045272 | MsG0380014601.01.T01:CDS |
| ATGGATACAACACAATGTCA+CGG | 0.625288 | 3:+57045775 | MsG0380014601.01.T01:CDS |
| ATTGACATGAATCTCACCAT+TGG | 0.626240 | 3:-57045178 | None:intergenic |
| TAGCAAGGTATGACTTAGAG+AGG | 0.645712 | 3:+57046159 | MsG0380014601.01.T01:CDS |
| TGGATACAATCCGATCTCAA+GGG | 0.656266 | 3:+57045629 | MsG0380014601.01.T01:CDS |
| TTCCTATGGAAACCTGCATG+AGG | 0.665648 | 3:-57044783 | None:intergenic |
| AAAGTGCTGCACTTACCAAG+AGG | 0.666364 | 3:-57045354 | None:intergenic |
| AGTGATTTGTCTGAGGATAG+CGG | 0.670703 | 3:-57045707 | None:intergenic |
| CCAGGTTACAACAACAAACG+AGG | 0.674784 | 3:+57045303 | MsG0380014601.01.T01:CDS |
| AACTTTACAGAAATGCCAAG+AGG | 0.681453 | 3:+57046075 | MsG0380014601.01.T01:CDS |
| TGCACTTACCAAGAGGAAAG+GGG | 0.685728 | 3:-57045347 | None:intergenic |
| ATATGTTGATGCAATATAGA+GGG | 0.687923 | 3:+57046239 | MsG0380014601.01.T01:three_prime_UTR |
| CTAGCACCAAGTGACATAGG+AGG | 0.695137 | 3:-57045996 | None:intergenic |
| CCTCATCTACATGAACAGGA+GGG | 0.718871 | 3:-57044614 | None:intergenic |
| GTGTCATATCACGAGCATAG+CGG | 0.748726 | 3:-57045854 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTAACATTTTTCTAAAT+AGG | - | Chr3:57045021-57045040 | None:intergenic | 10.0% |
| !! | AGAAAAATGTTAATTATCTT+TGG | + | Chr3:57045025-57045044 | MsG0380014601.01.T01:intron | 15.0% |
| !! | AACTTGTGCATAATAATAAA+AGG | - | Chr3:57044978-57044997 | None:intergenic | 20.0% |
| !! | ACTTGTGCATAATAATAAAA+GGG | - | Chr3:57044977-57044996 | None:intergenic | 20.0% |
| !! | CAATTCTTCTAAATTTGATT+TGG | - | Chr3:57044661-57044680 | None:intergenic | 20.0% |
| !!! | AAGTCAAATTTTGATCTAAT+TGG | - | Chr3:57045750-57045769 | None:intergenic | 20.0% |
| !!! | CAATTGAATTGATTCATTTT+TGG | - | Chr3:57045543-57045562 | None:intergenic | 20.0% |
| ! | AAGTATGAAAAACCATTTGA+GGG | + | Chr3:57045398-57045417 | MsG0380014601.01.T01:CDS | 25.0% |
| ! | AAGTCAAATTCTGATCTAAT+TGG | - | Chr3:57045603-57045622 | None:intergenic | 25.0% |
| ! | AATATGTTGATGCAATATAG+AGG | + | Chr3:57046238-57046257 | MsG0380014601.01.T01:exon | 25.0% |
| ! | ATATGTTGATGCAATATAGA+GGG | + | Chr3:57046239-57046258 | MsG0380014601.01.T01:three_prime_UTR | 25.0% |
| ! | ATCTTTGGTTATCATAGTTA+AGG | + | Chr3:57045040-57045059 | MsG0380014601.01.T01:intron | 25.0% |
| ! | CTTGTGCATAATAATAAAAG+GGG | - | Chr3:57044976-57044995 | None:intergenic | 25.0% |
| !! | AAATGGTTTTTCATACTTCT+AGG | - | Chr3:57045396-57045415 | None:intergenic | 25.0% |
| !!! | ACAAGTCTTTCTCTATTTTT+TGG | + | Chr3:57046495-57046514 | MsG0380014601.01.T01:three_prime_UTR | 25.0% |
| !!! | AGCTAATACTTTTTTCTTGA+AGG | + | Chr3:57046289-57046308 | MsG0380014601.01.T01:three_prime_UTR | 25.0% |
| !!! | TCAAAATTTGACTTGAGAAA+TGG | + | Chr3:57045756-57045775 | MsG0380014601.01.T01:CDS | 25.0% |
| !!! | TTCAAGAAAAAAGTATTAGC+TGG | - | Chr3:57046290-57046309 | None:intergenic | 25.0% |
| AACAATGTGACAGAAATACA+TGG | + | Chr3:57045804-57045823 | MsG0380014601.01.T01:CDS | 30.0% | |
| AACAATGTGACAGAAATACT+TGG | + | Chr3:57045657-57045676 | MsG0380014601.01.T01:CDS | 30.0% | |
| AGTATGAAAAACCATTTGAG+GGG | + | Chr3:57045399-57045418 | MsG0380014601.01.T01:CDS | 30.0% | |
| ATATCCATTGTTCTTCTAAG+AGG | - | Chr3:57045972-57045991 | None:intergenic | 30.0% | |
| ATGCATCCTATAAATTCACA+AGG | - | Chr3:57045109-57045128 | None:intergenic | 30.0% | |
| GAAGTATGAAAAACCATTTG+AGG | + | Chr3:57045397-57045416 | MsG0380014601.01.T01:CDS | 30.0% | |
| GTGAATTTATAGGATGCATA+TGG | + | Chr3:57045110-57045129 | MsG0380014601.01.T01:intron | 30.0% | |
| GTGTTTCCTTGTGAATTTAT+AGG | + | Chr3:57045100-57045119 | MsG0380014601.01.T01:intron | 30.0% | |
| TCAATGTTCCAGTTATTGAA+AGG | - | Chr3:57045219-57045238 | None:intergenic | 30.0% | |
| TCTTAGAAGAACAATGGATA+TGG | + | Chr3:57045971-57045990 | MsG0380014601.01.T01:CDS | 30.0% | |
| TGCTTATGCTATAAGAAAGT+AGG | + | Chr3:57046409-57046428 | MsG0380014601.01.T01:three_prime_UTR | 30.0% | |
| ! | AACCTCTGCATTTTTAAATC+CGG | - | Chr3:57044741-57044760 | None:intergenic | 30.0% |
| ! | CTAATTGGTTCATTCAACTT+TGG | - | Chr3:57045588-57045607 | None:intergenic | 30.0% |
| ! | TACTTTTAAACACTTCAGAG+TGG | + | Chr3:57044881-57044900 | MsG0380014601.01.T01:intron | 30.0% |
| ! | TTTGGAAATAAACTTGTTCG+AGG | - | Chr3:57045525-57045544 | None:intergenic | 30.0% |
| !! | TCAGAATTTGACTTGAGAAA+TGG | + | Chr3:57045609-57045628 | MsG0380014601.01.T01:CDS | 30.0% |
| !! | TCTTTGAAAGTGTTGAAATC+TGG | + | Chr3:57046448-57046467 | MsG0380014601.01.T01:three_prime_UTR | 30.0% |
| AACAGCAATGAAGTTTCATC+CGG | + | Chr3:57044719-57044738 | MsG0380014601.01.T01:CDS | 35.0% | |
| AACTTTACAGAAATGCCAAG+AGG | + | Chr3:57046075-57046094 | MsG0380014601.01.T01:CDS | 35.0% | |
| AGAATGCATGTCATATGCTT+AGG | + | Chr3:57045154-57045173 | MsG0380014601.01.T01:CDS | 35.0% | |
| AGAGAATATCGGCAATTAGT+TGG | - | Chr3:57045942-57045961 | None:intergenic | 35.0% | |
| ATAACTTGAGCTTCCTTCAA+AGG | - | Chr3:57046045-57046064 | None:intergenic | 35.0% | |
| ATATTCAACTTTCCTCATGC+AGG | + | Chr3:57044771-57044790 | MsG0380014601.01.T01:CDS | 35.0% | |
| ATCCGGATTTAAAAATGCAG+AGG | + | Chr3:57044736-57044755 | MsG0380014601.01.T01:CDS | 35.0% | |
| ATGGATACAACACAATGTCA+CGG | + | Chr3:57045775-57045794 | MsG0380014601.01.T01:CDS | 35.0% | |
| ATGTGACAGAAATACTTGGA+AGG | + | Chr3:57045661-57045680 | MsG0380014601.01.T01:CDS | 35.0% | |
| ATGTTCCAGTTATTGAAAGG+AGG | - | Chr3:57045216-57045235 | None:intergenic | 35.0% | |
| ATTGACATGAATCTCACCAT+TGG | - | Chr3:57045181-57045200 | None:intergenic | 35.0% | |
| CATTTCTGTAAGGTTCTTCT+TGG | - | Chr3:57046112-57046131 | None:intergenic | 35.0% | |
| CTATATGATTTCCCCTCAAA+TGG | - | Chr3:57045413-57045432 | None:intergenic | 35.0% | |
| CTCTGAATCTCTTCATGAAA+TGG | - | Chr3:57045462-57045481 | None:intergenic | 35.0% | |
| GAATGCATGTCATATGCTTA+GGG | + | Chr3:57045155-57045174 | MsG0380014601.01.T01:CDS | 35.0% | |
| GCTATATCAAAAGAGTGACT+TGG | - | Chr3:57046143-57046162 | None:intergenic | 35.0% | |
| TACCAATACAAAGCCTTTGA+AGG | + | Chr3:57046029-57046048 | MsG0380014601.01.T01:CDS | 35.0% | |
| TGTGACAGAAATACTTGGAA+GGG | + | Chr3:57045662-57045681 | MsG0380014601.01.T01:CDS | 35.0% | |
| TTAGAAGAATTGCAGAAGCT+GGG | + | Chr3:57044669-57044688 | MsG0380014601.01.T01:CDS | 35.0% | |
| TTCAACAAGGAAGATTATCC+AGG | + | Chr3:57045285-57045304 | MsG0380014601.01.T01:CDS | 35.0% | |
| TTTAGAAGAATTGCAGAAGC+TGG | + | Chr3:57044668-57044687 | MsG0380014601.01.T01:CDS | 35.0% | |
| ! | GTCACTCTTTTGATATAGCA+AGG | + | Chr3:57046144-57046163 | MsG0380014601.01.T01:CDS | 35.0% |
| ! | TTCCTTCAAAGGCTTTGTAT+TGG | - | Chr3:57046034-57046053 | None:intergenic | 35.0% |
| ! | TTTGGAAAGTGATTTGTCTG+AGG | - | Chr3:57045570-57045589 | None:intergenic | 35.0% |
| AGAGATTGCAATGACTCCAT+TGG | - | Chr3:57045903-57045922 | None:intergenic | 40.0% | |
| AGAGCCTCTTAGAAGAACAA+TGG | + | Chr3:57045965-57045984 | MsG0380014601.01.T01:CDS | 40.0% | |
| ATCACCTCATCTACATGAAC+AGG | - | Chr3:57044621-57044640 | None:intergenic | 40.0% | |
| ATGCATATGGATCTCGTGTT+TGG | + | Chr3:57045123-57045142 | MsG0380014601.01.T01:CDS | 40.0% | |
| ATGGATACAATCCGATCTCA+AGG | + | Chr3:57045628-57045647 | MsG0380014601.01.T01:CDS | 40.0% | |
| CAAGCAAAGCTTTCTGACAA+TGG | + | Chr3:57045248-57045267 | MsG0380014601.01.T01:CDS | 40.0% | |
| CATTGTCAGAAAGCTTTGCT+TGG | - | Chr3:57045250-57045269 | None:intergenic | 40.0% | |
| CTACACCTCCTTTCAATAAC+TGG | + | Chr3:57045208-57045227 | MsG0380014601.01.T01:CDS | 40.0% | |
| GAGGCTCTGTTAGAGAATAT+CGG | - | Chr3:57045953-57045972 | None:intergenic | 40.0% | |
| GCATAATAGCATGCTGCAAA+AGG | - | Chr3:57046392-57046411 | None:intergenic | 40.0% | |
| GGAAGATAGTTGAGATCAAC+TGG | - | Chr3:57045504-57045523 | None:intergenic | 40.0% | |
| GGTTCTTCTTGGAAATAGCT+TGG | - | Chr3:57046101-57046120 | None:intergenic | 40.0% | |
| TAGCAAGGTATGACTTAGAG+AGG | + | Chr3:57046159-57046178 | MsG0380014601.01.T01:CDS | 40.0% | |
| TCATGTTGTCTTCCTTCCTA+TGG | - | Chr3:57044800-57044819 | None:intergenic | 40.0% | |
| TGGATACAACACAATGTCAC+GGG | + | Chr3:57045776-57045795 | MsG0380014601.01.T01:CDS | 40.0% | |
| TGGATACAATCCGATCTCAA+GGG | + | Chr3:57045629-57045648 | MsG0380014601.01.T01:CDS | 40.0% | |
| TTGTTGATCTCCCTTGAGAT+CGG | - | Chr3:57045642-57045661 | None:intergenic | 40.0% | |
| ! | AATGTTGCTTGTTCTGCTGA+CGG | + | Chr3:57045828-57045847 | MsG0380014601.01.T01:CDS | 40.0% |
| ! | AGTGATTTGTCTGAGGATAG+CGG | - | Chr3:57045710-57045729 | None:intergenic | 40.0% |
| !! | CGACTGCATTGATTTCAACA+AGG | + | Chr3:57045272-57045291 | MsG0380014601.01.T01:CDS | 40.0% |
| ACCTCATCTACATGAACAGG+AGG | - | Chr3:57044618-57044637 | None:intergenic | 45.0% | |
| AGCATACGTGTTACATGGAG+TGG | + | Chr3:57044692-57044711 | MsG0380014601.01.T01:CDS | 45.0% | |
| CCAGGTTACAACAACAAACG+AGG | + | Chr3:57045303-57045322 | MsG0380014601.01.T01:CDS | 45.0% | |
| CCTCATCTACATGAACAGGA+GGG | - | Chr3:57044617-57044636 | None:intergenic | 45.0% | |
| CTGCACTTACCAAGAGGAAA+GGG | - | Chr3:57045351-57045370 | None:intergenic | 45.0% | |
| GACACAAGACACTCGAAGAT+TGG | + | Chr3:57045872-57045891 | MsG0380014601.01.T01:CDS | 45.0% | |
| GATTGCAATGACTCCATTGG+TGG | - | Chr3:57045900-57045919 | None:intergenic | 45.0% | |
| GGATGATTGCACTGTGTGAA+TGG | + | Chr3:57046260-57046279 | MsG0380014601.01.T01:three_prime_UTR | 45.0% | |
| GGCATCTGAGCATTTCTGTA+AGG | - | Chr3:57046122-57046141 | None:intergenic | 45.0% | |
| GTGTCATATCACGAGCATAG+CGG | - | Chr3:57045857-57045876 | None:intergenic | 45.0% | |
| TAGTTGAGATCAACTGGAGC+TGG | - | Chr3:57045498-57045517 | None:intergenic | 45.0% | |
| TATCGGCAATTAGTTGGCGT+TGG | - | Chr3:57045936-57045955 | None:intergenic | 45.0% | |
| TCATGCAGGTTTCCATAGGA+AGG | + | Chr3:57044785-57044804 | MsG0380014601.01.T01:CDS | 45.0% | |
| TCGAAGATTGGTACCACCAA+TGG | + | Chr3:57045884-57045903 | MsG0380014601.01.T01:CDS | 45.0% | |
| TCTCTGCTGAAAACTCTCCT+AGG | - | Chr3:57046200-57046219 | None:intergenic | 45.0% | |
| TGCACTTACCAAGAGGAAAG+GGG | - | Chr3:57045350-57045369 | None:intergenic | 45.0% | |
| TGTCATATGCTTAGGGCCAA+TGG | + | Chr3:57045162-57045181 | MsG0380014601.01.T01:CDS | 45.0% | |
| TTCCTAGCACCAAGTGACAT+AGG | - | Chr3:57046002-57046021 | None:intergenic | 45.0% | |
| TTCCTATGGAAACCTGCATG+AGG | - | Chr3:57044786-57044805 | None:intergenic | 45.0% | |
| TTCCTCATGCAGGTTTCCAT+AGG | + | Chr3:57044781-57044800 | MsG0380014601.01.T01:CDS | 45.0% | |
| TTGGAAATAGCTTGGCCTCT+TGG | - | Chr3:57046093-57046112 | None:intergenic | 45.0% | |
| ! | CTAAGCTTGAGTTGTGAAGC+TGG | + | Chr3:57046334-57046353 | MsG0380014601.01.T01:three_prime_UTR | 45.0% |
| !! | AAAGTGCTGCACTTACCAAG+AGG | - | Chr3:57045357-57045376 | None:intergenic | 45.0% |
| !! | ATGTCACTTGGTGCTAGGAA+TGG | + | Chr3:57046002-57046021 | MsG0380014601.01.T01:CDS | 45.0% |
| !! | CCTCGTTTGTTGTTGTAACC+TGG | - | Chr3:57045306-57045325 | None:intergenic | 45.0% |
| AGGGTTGCTTGTTCTGCTGA+CGG | + | Chr3:57045681-57045700 | MsG0380014601.01.T01:CDS | 50.0% | |
| ATGGCTCCTCCTATGTCACT+TGG | + | Chr3:57045990-57046009 | MsG0380014601.01.T01:CDS | 50.0% | |
| CATTGCAATCTCTGCAACCG+TGG | + | Chr3:57045910-57045929 | MsG0380014601.01.T01:CDS | 50.0% | |
| CCCTCCTGTTCATGTAGATG+AGG | + | Chr3:57044614-57044633 | MsG0380014601.01.T01:CDS | 50.0% | |
| CTAGCACCAAGTGACATAGG+AGG | - | Chr3:57045999-57046018 | None:intergenic | 50.0% | |
| GCTGCACTTACCAAGAGGAA+AGG | - | Chr3:57045352-57045371 | None:intergenic | 50.0% | |
| TGTGATGACCCCTTTCCTCT+TGG | + | Chr3:57045339-57045358 | MsG0380014601.01.T01:CDS | 50.0% | |
| ! | CTGGGAGCATACGTGTTACA+TGG | + | Chr3:57044687-57044706 | MsG0380014601.01.T01:CDS | 50.0% |
| ! | GGTACAATGCTGAAGTGCCT+AGG | + | Chr3:57046180-57046199 | MsG0380014601.01.T01:CDS | 50.0% |
| !! | CAATTAGTTGGCGTTGGCCA+CGG | - | Chr3:57045930-57045949 | None:intergenic | 50.0% |
| !! | CTCCTATGTCACTTGGTGCT+AGG | + | Chr3:57045997-57046016 | MsG0380014601.01.T01:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 57044585 | 57046519 | 57044585 | ID=MsG0380014601.01;Name=MsG0380014601.01 |
| Chr3 | mRNA | 57044585 | 57046519 | 57044585 | ID=MsG0380014601.01.T01;Parent=MsG0380014601.01;Name=MsG0380014601.01.T01;_AED=0.42;_eAED=0.42;_QI=0|1|0.5|1|1|1|2|281|453 |
| Chr3 | exon | 57044585 | 57044829 | 57044585 | ID=MsG0380014601.01.T01:exon:4222;Parent=MsG0380014601.01.T01 |
| Chr3 | exon | 57045122 | 57046519 | 57045122 | ID=MsG0380014601.01.T01:exon:4223;Parent=MsG0380014601.01.T01 |
| Chr3 | CDS | 57044585 | 57044829 | 57044585 | ID=MsG0380014601.01.T01:cds;Parent=MsG0380014601.01.T01 |
| Chr3 | CDS | 57045122 | 57046238 | 57045122 | ID=MsG0380014601.01.T01:cds;Parent=MsG0380014601.01.T01 |
| Chr3 | three_prime_UTR | 57046239 | 57046519 | 57046239 | ID=MsG0380014601.01.T01:three_prime_utr;Parent=MsG0380014601.01.T01 |
| Gene Sequence |
| Protein sequence |
