AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014911.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014911.01.T01 MTR_3g465690 66.429 140 11 1 1 104 1 140 1.02e-55 172
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014911.01.T01 AT5G37055 47.552 143 35 3 1 106 1 140 3.97e-33 115

Find 40 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAAGTGCGGCGACCATTT+TGG 0.242579 3:-62362596 None:intergenic
CCACCACATGTTCCACATAT+TGG 0.260024 3:+62363550 MsG0380014911.01.T01:CDS
TTAGGAAAGTCAAACTACTA+TGG 0.275533 3:+62365704 MsG0380014911.01.T01:intron
ACATCTAACACAGGTGTAAT+TGG 0.304248 3:-62363639 None:intergenic
TGAGATTAGTCTCAAATTGC+AGG 0.324634 3:+62365752 MsG0380014911.01.T01:CDS
GAGTAGAACTTGGTCTCGTT+TGG 0.341891 3:-62365780 None:intergenic
AGTAGAACTTGGTCTCGTTT+GGG 0.370624 3:-62365779 None:intergenic
AGCTTCATCATCATCAAGAT+TGG 0.387279 3:-62362701 None:intergenic
AGCAGCCTGGGTGCGGTTGT+CGG 0.392271 3:-62362623 None:intergenic
TCTTGCACGATTGGATGCTT+TGG 0.400732 3:+62362645 MsG0380014911.01.T01:CDS
CCAGGCTGCTCTTGCACGAT+TGG 0.401282 3:+62362636 MsG0380014911.01.T01:CDS
ACGAAAAGTTGCTTCCAAAA+TGG 0.419378 3:+62362582 MsG0380014911.01.T01:CDS
TGGCGACGGGCGGTTGAGCT+TGG 0.433242 3:-62363591 None:intergenic
AATTCAAACCGCCGCACGTC+AGG 0.438893 3:+62362553 MsG0380014911.01.T01:CDS
TAGGAAAGTCAAACTACTAT+GGG 0.448853 3:+62365705 MsG0380014911.01.T01:intron
CCAATCGTGCAAGAGCAGCC+TGG 0.481566 3:-62362636 None:intergenic
TCTCTTGATGATGATGATCA+AGG 0.490815 3:+62362724 MsG0380014911.01.T01:CDS
GCTTCATCATCATCAAGATT+GGG 0.498852 3:-62362700 None:intergenic
AACAGCTGCTTTCCAATATG+TGG 0.501033 3:-62363562 None:intergenic
CAATCGTGCAAGAGCAGCCT+GGG 0.505412 3:-62362635 None:intergenic
GTGCAAGAGCAGCCTGGGTG+CGG 0.511736 3:-62362630 None:intergenic
CGACGGGCGGTTGAGCTTGG+AGG 0.521898 3:-62363588 None:intergenic
ACATATTGGAAAGCAGCTGT+TGG 0.551193 3:+62363564 MsG0380014911.01.T01:CDS
AACCACAGACAGTACAAAAG+TGG 0.564505 3:-62363611 None:intergenic
AAGATACGATGAGTAGAACT+TGG 0.565577 3:-62365790 None:intergenic
GACAGTACAAAAGTGGCGAC+GGG 0.566475 3:-62363604 None:intergenic
TTCGTGTTCGGCCTGACGTG+CGG 0.571301 3:-62362564 None:intergenic
TATGGGAAAGTTAAAGTCAG+TGG 0.585941 3:+62365722 MsG0380014911.01.T01:CDS
AAAGCCGAAATGGAGGAAGA+TGG 0.586518 3:+62362526 None:intergenic
GTGTTCGGCCTGACGTGCGG+CGG 0.595568 3:-62362561 None:intergenic
GTAGAACTTGGTCTCGTTTG+GGG 0.601853 3:-62365778 None:intergenic
AGACAGTACAAAAGTGGCGA+CGG 0.605488 3:-62363605 None:intergenic
GTTGTCGGAGCTAGCAAGTG+CGG 0.612413 3:-62362608 None:intergenic
TAGCTCCGACAACCGCACCC+AGG 0.635728 3:+62362618 MsG0380014911.01.T01:CDS
CCAATATGTGGAACATGTGG+TGG 0.644105 3:-62363550 None:intergenic
GCTTTGGAGAATGACAATGC+TGG 0.649139 3:+62362661 MsG0380014911.01.T01:CDS
AGTACAAAAGTGGCGACGGG+CGG 0.682067 3:-62363601 None:intergenic
GCGCACACCACATCTAACAC+AGG 0.694036 3:-62363648 None:intergenic
AATTACACCTGTGTTAGATG+TGG 0.697993 3:+62363641 MsG0380014911.01.T01:CDS
TTTCCAATATGTGGAACATG+TGG 0.705897 3:-62363553 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTAAAACATTTTTAATTAA+AGG + Chr3:62362956-62362975 MsG0380014911.01.T01:intron 10.0%
!!! GTTTTTCTTATTATATTTTA+AGG - Chr3:62364956-62364975 None:intergenic 10.0%
!! AAAGCTTAAATATATTCTTT+AGG + Chr3:62365499-62365518 MsG0380014911.01.T01:intron 15.0%
!! AACATTATCATTAAAAACTT+AGG - Chr3:62363221-62363240 None:intergenic 15.0%
!! ATACAATAAAAAATGCAATT+TGG - Chr3:62362765-62362784 None:intergenic 15.0%
!! TAAAAAGTTTAATTCTGATA+CGG + Chr3:62363126-62363145 MsG0380014911.01.T01:intron 15.0%
!! TACAATAAAAAATGCAATTT+GGG - Chr3:62362764-62362783 None:intergenic 15.0%
!!! GAATTAAACTCATTTTATTT+TGG - Chr3:62363296-62363315 None:intergenic 15.0%
!!! TATTTTATTCATCTTATATG+CGG + Chr3:62365409-62365428 MsG0380014911.01.T01:intron 15.0%
!!! TCAATTACTAAATTTTAGTT+TGG - Chr3:62364596-62364615 None:intergenic 15.0%
!!! TCAGAATTAAACTTTTTATT+TGG - Chr3:62363124-62363143 None:intergenic 15.0%
!!! TTTCTTATTATATTTTAAGG+TGG - Chr3:62364953-62364972 None:intergenic 15.0%
!! AAAACCAATAAAAAGTTTCA+AGG + Chr3:62364414-62364433 MsG0380014911.01.T01:intron 20.0%
!! AAAATCAATCACACATATTA+CGG + Chr3:62364775-62364794 MsG0380014911.01.T01:intron 20.0%
!! ACAATAAAAAATGCAATTTG+GGG - Chr3:62362763-62362782 None:intergenic 20.0%
!! TTGTAGACAATTATAAACAT+TGG - Chr3:62365128-62365147 None:intergenic 20.0%
!!! ATCTTTTATTTCTTCTAGAA+GGG + Chr3:62365260-62365279 MsG0380014911.01.T01:intron 20.0%
!!! ATTTTATTCATCTTATATGC+GGG + Chr3:62365410-62365429 MsG0380014911.01.T01:intron 20.0%
!!! CAGAAAAATGTTTATGTTTT+AGG + Chr3:62363914-62363933 MsG0380014911.01.T01:intron 20.0%
!!! CAGTAATTATTCTTGTTATT+TGG + Chr3:62362883-62362902 MsG0380014911.01.T01:intron 20.0%
!!! TAAGTGTAAAATGTTGTTTT+GGG - Chr3:62365026-62365045 None:intergenic 20.0%
!!! TATCTTTTATTTCTTCTAGA+AGG + Chr3:62365259-62365278 MsG0380014911.01.T01:intron 20.0%
!!! TTAAGTGTAAAATGTTGTTT+TGG - Chr3:62365027-62365046 None:intergenic 20.0%
!!! TTACTAAATTTTAGTTTGGA+AGG - Chr3:62364592-62364611 None:intergenic 20.0%
!!! TTATTATATTTTAAGGTGGT+TGG - Chr3:62364949-62364968 None:intergenic 20.0%
! ACTAAAAGACTAATCTCAAA+AGG - Chr3:62363872-62363891 None:intergenic 25.0%
! ACTTAATTGTAAGTTGCTTA+GGG + Chr3:62365041-62365060 MsG0380014911.01.T01:intron 25.0%
! AGATATTGATAAACACACAT+AGG + Chr3:62365091-62365110 MsG0380014911.01.T01:intron 25.0%
! ATTCATTATATCTTCCCAAA+TGG + Chr3:62364626-62364645 MsG0380014911.01.T01:intron 25.0%
! ATTTGATATTAATGTCACCA+TGG + Chr3:62365544-62365563 MsG0380014911.01.T01:intron 25.0%
! CTAAAAGACTAATCTCAAAA+GGG - Chr3:62363871-62363890 None:intergenic 25.0%
! GTACATCTGCATATAAAATT+AGG - Chr3:62364120-62364139 None:intergenic 25.0%
! GTATCTGAATCAACTTTATA+TGG + Chr3:62364335-62364354 MsG0380014911.01.T01:intron 25.0%
! TAAATGAAATTATGCTCTTG+TGG + Chr3:62362814-62362833 MsG0380014911.01.T01:intron 25.0%
! TATAAGCACATAAACAAAGA+AGG - Chr3:62364050-62364069 None:intergenic 25.0%
! TGTTTATGTGCTTATATGAT+TGG + Chr3:62364054-62364073 MsG0380014911.01.T01:intron 25.0%
! TTTAATTACAGAGACCATTT+GGG - Chr3:62364643-62364662 None:intergenic 25.0%
!! AAATGCATCATAGTTTCTTT+TGG - Chr3:62365477-62365496 None:intergenic 25.0%
!! TAGTCCTTGAAACTTTTTAT+TGG - Chr3:62364421-62364440 None:intergenic 25.0%
!! TGTTTGGTTATTGATGATTT+CGG + Chr3:62365663-62365682 MsG0380014911.01.T01:intron 25.0%
!!! AATATTTTAAGACCAAACAC+TGG - Chr3:62365196-62365215 None:intergenic 25.0%
!!! ATCACTGTTAATTTTCAAGT+TGG - Chr3:62365225-62365244 None:intergenic 25.0%
!!! ATTTGCAGTGTTTTTTTATG+CGG + Chr3:62364176-62364195 MsG0380014911.01.T01:intron 25.0%
!!! CTTTTCTTTTAAGAAGAGTA+GGG - Chr3:62364540-62364559 None:intergenic 25.0%
!!! TATGTGTGATTGATTTTCTT+AGG - Chr3:62364772-62364791 None:intergenic 25.0%
!!! TTTAGTTTGGAAGGAAATTA+GGG - Chr3:62364583-62364602 None:intergenic 25.0%
!!! TTTTAGTTTGGAAGGAAATT+AGG - Chr3:62364584-62364603 None:intergenic 25.0%
ACTAATCTCAAAAGGGAAAA+GGG - Chr3:62363864-62363883 None:intergenic 30.0%
AGTGTGATGTTATCTCTAAT+GGG - Chr3:62363459-62363478 None:intergenic 30.0%
CACGTGTACATAAAAAGTTA+TGG + Chr3:62364216-62364235 MsG0380014911.01.T01:intron 30.0%
CACTTAATTGTAAGTTGCTT+AGG + Chr3:62365040-62365059 MsG0380014911.01.T01:intron 30.0%
CCTACTCTTCTTAAAAGAAA+AGG + Chr3:62364538-62364557 MsG0380014911.01.T01:intron 30.0%
CTTTAATTACAGAGACCATT+TGG - Chr3:62364644-62364663 None:intergenic 30.0%
GCATATACACTGCAATAATA+AGG - Chr3:62363318-62363337 None:intergenic 30.0%
TAGGAAAGTCAAACTACTAT+GGG + Chr3:62365705-62365724 MsG0380014911.01.T01:intron 30.0%
TGCTTAGCAATCTATTTAAG+AGG + Chr3:62364295-62364314 MsG0380014911.01.T01:intron 30.0%
TTAGCAATCTATTTAAGAGG+TGG + Chr3:62364298-62364317 MsG0380014911.01.T01:intron 30.0%
TTAGGAAAGTCAAACTACTA+TGG + Chr3:62365704-62365723 MsG0380014911.01.T01:intron 30.0%
! ATTTTCTTAGGTGGAATTGA+GGG - Chr3:62364760-62364779 None:intergenic 30.0%
! GTGGTAATTTCTTTTCTTCT+AGG + Chr3:62362833-62362852 MsG0380014911.01.T01:intron 30.0%
!! CCTTTTCTTTTAAGAAGAGT+AGG - Chr3:62364541-62364560 None:intergenic 30.0%
!! GTTGTAAAGGAATTGATTTG+TGG - Chr3:62364917-62364936 None:intergenic 30.0%
!! TTTTGCTGCTTCAAAAGTAT+TGG - Chr3:62364397-62364416 None:intergenic 30.0%
!!! TCTATGACACTATTTTTGCA+TGG + Chr3:62365596-62365615 MsG0380014911.01.T01:intron 30.0%
AAGAAGGCTCTGCAATTAAA+AGG - Chr3:62364034-62364053 None:intergenic 35.0%
AAGAGCTCAAGAAATGTTCT+TGG - Chr3:62363408-62363427 None:intergenic 35.0%
AAGATACGATGAGTAGAACT+TGG - Chr3:62365793-62365812 None:intergenic 35.0%
AATTACACCTGTGTTAGATG+TGG + Chr3:62363641-62363660 MsG0380014911.01.T01:CDS 35.0%
AATTAGTGTCATAGCGTGTT+GGG - Chr3:62365308-62365327 None:intergenic 35.0%
ACAAAGTGAAAACCAGTGTT+TGG + Chr3:62365181-62365200 MsG0380014911.01.T01:intron 35.0%
ACATCTAACACAGGTGTAAT+TGG - Chr3:62363642-62363661 None:intergenic 35.0%
ACGAAAAGTTGCTTCCAAAA+TGG + Chr3:62362582-62362601 MsG0380014911.01.T01:CDS 35.0%
AGAGCTCAAGAAATGTTCTT+GGG - Chr3:62363407-62363426 None:intergenic 35.0%
AGATACCATGTATCCAATAC+TGG - Chr3:62363767-62363786 None:intergenic 35.0%
AGCTTAGAACATCCTTAACA+AGG - Chr3:62363943-62363962 None:intergenic 35.0%
AGCTTCATCATCATCAAGAT+TGG - Chr3:62362704-62362723 None:intergenic 35.0%
ATACAAAATACCCTTCCGTT+AGG - Chr3:62363081-62363100 None:intergenic 35.0%
ATGACACTAATTCTGGTACT+GGG + Chr3:62365316-62365335 MsG0380014911.01.T01:intron 35.0%
ATGCAGAGAAAACAGTCTAA+AGG + Chr3:62363334-62363353 MsG0380014911.01.T01:intron 35.0%
CTAATCTCAAAAGGGAAAAG+GGG - Chr3:62363863-62363882 None:intergenic 35.0%
GACTAATCTCAAAAGGGAAA+AGG - Chr3:62363865-62363884 None:intergenic 35.0%
GAGTGTGATGTTATCTCTAA+TGG - Chr3:62363460-62363479 None:intergenic 35.0%
GATACCATGTATCCAATACT+GGG - Chr3:62363766-62363785 None:intergenic 35.0%
GCTTCATCATCATCAAGATT+GGG - Chr3:62362703-62362722 None:intergenic 35.0%
GTACGATATGACATGAAAGT+TGG + Chr3:62364136-62364155 MsG0380014911.01.T01:intron 35.0%
GTGGCATCAAACAAATGTTT+AGG - Chr3:62363730-62363749 None:intergenic 35.0%
TACAAGAATGAAAACCAGGT+GGG + Chr3:62365143-62365162 MsG0380014911.01.T01:intron 35.0%
TATGACACTAATTCTGGTAC+TGG + Chr3:62365315-62365334 MsG0380014911.01.T01:intron 35.0%
TATGGGAAAGTTAAAGTCAG+TGG + Chr3:62365722-62365741 MsG0380014911.01.T01:CDS 35.0%
TGGATACATGGTATCTTAAG+TGG + Chr3:62363771-62363790 MsG0380014911.01.T01:intron 35.0%
TGTCTACAAGAATGAAAACC+AGG + Chr3:62365139-62365158 MsG0380014911.01.T01:intron 35.0%
TTACTGCCGTTCATGTTATA+GGG + Chr3:62364999-62365018 MsG0380014911.01.T01:intron 35.0%
TTTCCAATATGTGGAACATG+TGG - Chr3:62363556-62363575 None:intergenic 35.0%
! CTAAGTTTGCCTGCATTTTA+AGG - Chr3:62363522-62363541 None:intergenic 35.0%
! CTTTTCCTTAGTTGAAATCG+AGG - Chr3:62364866-62364885 None:intergenic 35.0%
! GATTTTCTTAGGTGGAATTG+AGG - Chr3:62364761-62364780 None:intergenic 35.0%
! GTTCAAAGCATTTAAACCAG+CGG + Chr3:62364455-62364474 MsG0380014911.01.T01:intron 35.0%
! TGATGATGATGATCAAGGTT+AGG + Chr3:62362729-62362748 MsG0380014911.01.T01:intron 35.0%
! TTCAAAGCATTTAAACCAGC+GGG + Chr3:62364456-62364475 MsG0380014911.01.T01:intron 35.0%
! TTTTCTTAGGTGGAATTGAG+GGG - Chr3:62364759-62364778 None:intergenic 35.0%
!! AACAGTCTAAAGGCACTAAA+AGG + Chr3:62363344-62363363 MsG0380014911.01.T01:intron 35.0%
!! GTGTGATTGATTTTCTTAGG+TGG - Chr3:62364769-62364788 None:intergenic 35.0%
!! TATATGATTGGACTAGCTTC+AGG + Chr3:62364066-62364085 MsG0380014911.01.T01:intron 35.0%
!! TCTCTTGATGATGATGATCA+AGG + Chr3:62362724-62362743 MsG0380014911.01.T01:CDS 35.0%
!! TGAGATTAGTCTCAAATTGC+AGG + Chr3:62365752-62365771 MsG0380014911.01.T01:CDS 35.0%
!!! ATATTTTAAGGTGGTTGGTC+TGG - Chr3:62364944-62364963 None:intergenic 35.0%
!!! TGTTTTAGGTAGCCTTGTTA+AGG + Chr3:62363928-62363947 MsG0380014911.01.T01:intron 35.0%
!!! TGTTTTTTTATGCGGCAGAA+AGG + Chr3:62364184-62364203 MsG0380014911.01.T01:intron 35.0%
AACCACAGACAGTACAAAAG+TGG - Chr3:62363614-62363633 None:intergenic 40.0%
ACACGCTATGACACTAATTC+TGG + Chr3:62365309-62365328 MsG0380014911.01.T01:intron 40.0%
ACATATTGGAAAGCAGCTGT+TGG + Chr3:62363564-62363583 MsG0380014911.01.T01:CDS 40.0%
AGCATATGTTTGTGTCACAG+TGG - Chr3:62364279-62364298 None:intergenic 40.0%
AGGCGACAAATTTCAAGCAT+CGG - Chr3:62363710-62363729 None:intergenic 40.0%
AGTAGAACTTGGTCTCGTTT+GGG - Chr3:62365782-62365801 None:intergenic 40.0%
AGTTTGGAAGGAAATTAGGG+AGG - Chr3:62364580-62364599 None:intergenic 40.0%
ATCGAGGTACGGATGAATAT+TGG - Chr3:62364850-62364869 None:intergenic 40.0%
ATTAGTGTCATAGCGTGTTG+GGG - Chr3:62365307-62365326 None:intergenic 40.0%
CCTTAGTTGAAATCGAGGTA+CGG - Chr3:62364861-62364880 None:intergenic 40.0%
CTACAAGAATGAAAACCAGG+TGG + Chr3:62365142-62365161 MsG0380014911.01.T01:intron 40.0%
CTTATCTGTGTGTGAGTTTC+AGG - Chr3:62363006-62363025 None:intergenic 40.0%
GAATTAGTGTCATAGCGTGT+TGG - Chr3:62365309-62365328 None:intergenic 40.0%
GACCTTGTTCCTTAAAATGC+AGG + Chr3:62363510-62363529 MsG0380014911.01.T01:intron 40.0%
GATGGCAGAAGAGTTATGTT+TGG + Chr3:62365647-62365666 MsG0380014911.01.T01:intron 40.0%
GGGTGAAATTGATGGAATTG+TGG - Chr3:62364734-62364753 None:intergenic 40.0%
GTTACTGCCGTTCATGTTAT+AGG + Chr3:62364998-62365017 MsG0380014911.01.T01:intron 40.0%
TATATGGCGTCCATACTTCA+TGG + Chr3:62364351-62364370 MsG0380014911.01.T01:intron 40.0%
TTGGGTCCCTATAACATGAA+CGG - Chr3:62365008-62365027 None:intergenic 40.0%
! AACAGCTGCTTTCCAATATG+TGG - Chr3:62363565-62363584 None:intergenic 40.0%
! GTACGGATGAATATTGGCTA+TGG - Chr3:62364844-62364863 None:intergenic 40.0%
! GTTTCTTTTGGCACACACAT+TGG - Chr3:62365465-62365484 None:intergenic 40.0%
! GTTTTCACTTTGTCCTTCAG+TGG - Chr3:62365174-62365193 None:intergenic 40.0%
! TCAAAGCATTTAAACCAGCG+GGG + Chr3:62364457-62364476 MsG0380014911.01.T01:intron 40.0%
! TGGAAGCAACTTTTCGTGTT+CGG - Chr3:62362579-62362598 None:intergenic 40.0%
! TTCAAGTGCTTTTGCTTGTC+TGG - Chr3:62363374-62363393 None:intergenic 40.0%
!! AAAAGCACTTGAAGCTAGGA+AGG + Chr3:62363381-62363400 MsG0380014911.01.T01:intron 40.0%
!! AAGCAAAAGCACTTGAAGCT+AGG + Chr3:62363377-62363396 MsG0380014911.01.T01:intron 40.0%
!! AGGAATTGATTTGTGGTGAC+TGG - Chr3:62364910-62364929 None:intergenic 40.0%
!! AGGTAAACTTGCTGGATAAG+TGG + Chr3:62364086-62364105 MsG0380014911.01.T01:intron 40.0%
!! AGTCTTTTAGTTGCTTGACC+AGG + Chr3:62363881-62363900 MsG0380014911.01.T01:intron 40.0%
!! TGCCTGCATTTTAAGGAACA+AGG - Chr3:62363515-62363534 None:intergenic 40.0%
!! TTGGTCTGGACTTGTTGTAA+AGG - Chr3:62364930-62364949 None:intergenic 40.0%
!! TTTTCGTTGAGCTAGCCTAA+CGG + Chr3:62363063-62363082 MsG0380014911.01.T01:intron 40.0%
!!! AAAGTATTGGTTTTAGCCGC+TGG - Chr3:62364384-62364403 None:intergenic 40.0%
ACTTGCTCTGTACACAGTCT+TGG - Chr3:62363820-62363839 None:intergenic 45.0%
AGACAGTACAAAAGTGGCGA+CGG - Chr3:62363608-62363627 None:intergenic 45.0%
ATATGCGGGAATTCTGCCTA+TGG + Chr3:62365424-62365443 MsG0380014911.01.T01:intron 45.0%
ATCTGTGTGTGAGTTTCAGG+TGG - Chr3:62363003-62363022 None:intergenic 45.0%
ATGTATCCAATACTGGGCAG+GGG - Chr3:62363760-62363779 None:intergenic 45.0%
CATGGTGTAGACTGACTGAA+TGG + Chr3:62365614-62365633 MsG0380014911.01.T01:intron 45.0%
CATGTATCCAATACTGGGCA+GGG - Chr3:62363761-62363780 None:intergenic 45.0%
CCAATATGTGGAACATGTGG+TGG - Chr3:62363553-62363572 None:intergenic 45.0%
CCACCACATGTTCCACATAT+TGG + Chr3:62363550-62363569 MsG0380014911.01.T01:CDS 45.0%
CCGTACCTCGATTTCAACTA+AGG + Chr3:62364858-62364877 MsG0380014911.01.T01:intron 45.0%
CTAGCTTCAGGTAAACTTGC+TGG + Chr3:62364078-62364097 MsG0380014911.01.T01:intron 45.0%
CTGAATGGCTTGAGACATGA+TGG + Chr3:62365629-62365648 MsG0380014911.01.T01:intron 45.0%
GAGTAGAACTTGGTCTCGTT+TGG - Chr3:62365783-62365802 None:intergenic 45.0%
GTAGAACTTGGTCTCGTTTG+GGG - Chr3:62365781-62365800 None:intergenic 45.0%
TCTTGCACGATTGGATGCTT+TGG + Chr3:62362645-62362664 MsG0380014911.01.T01:CDS 45.0%
TTAGGTGGAATTGAGGGGAT+GGG - Chr3:62364754-62364773 None:intergenic 45.0%
TTAGTTGCTTGACCAGGTTC+AGG + Chr3:62363887-62363906 MsG0380014911.01.T01:intron 45.0%
! TTTTTCTGCTTGCCTGAACC+TGG - Chr3:62363902-62363921 None:intergenic 45.0%
!! GCTTTGGAGAATGACAATGC+TGG + Chr3:62362661-62362680 MsG0380014911.01.T01:CDS 45.0%
!! GTGCACATTTTGACACCGAT+TGG - Chr3:62363680-62363699 None:intergenic 45.0%
!! TCTACTTTTGTTAACCCCGC+TGG - Chr3:62364474-62364493 None:intergenic 45.0%
!!! TATTGGTTTTAGCCGCTGGA+AGG - Chr3:62364380-62364399 None:intergenic 45.0%
!!! AAATTTGTTTTTTTTTTTTT+AGG + Chr3:62365686-62365705 MsG0380014911.01.T01:intron 5.0%
!!! ATTTTGTATTTTTAAATAAA+AGG + Chr3:62363092-62363111 MsG0380014911.01.T01:intron 5.0%
!!! TTAAAACATTTTTAATTAAA+GGG + Chr3:62362957-62362976 MsG0380014911.01.T01:intron 5.0%
CACCATGCAACATGCAACCA+TGG - Chr3:62365564-62365583 None:intergenic 50.0%
CACCATGGTTGCATGTTGCA+TGG + Chr3:62365559-62365578 MsG0380014911.01.T01:intron 50.0%
CCATGTATCCAATACTGGGC+AGG - Chr3:62363762-62363781 None:intergenic 50.0%
CTTAGGTGGAATTGAGGGGA+TGG - Chr3:62364755-62364774 None:intergenic 50.0%
GACAGTACAAAAGTGGCGAC+GGG - Chr3:62363607-62363626 None:intergenic 50.0%
GAGGGGATGGGTGAAATTGA+TGG - Chr3:62364742-62364761 None:intergenic 50.0%
GCAATAGCACCATCGTCCAT+AGG - Chr3:62365443-62365462 None:intergenic 50.0%
GGAATTCTGCCTATGGACGA+TGG + Chr3:62365431-62365450 MsG0380014911.01.T01:intron 50.0%
TGGAAGGCTGCCATGAAGTA+TGG - Chr3:62364364-62364383 None:intergenic 50.0%
TGTATCCAATACTGGGCAGG+GGG - Chr3:62363759-62363778 None:intergenic 50.0%
! CCTGCCCAGTATTGGATACA+TGG + Chr3:62363759-62363778 MsG0380014911.01.T01:intron 50.0%
! GGTGTGCGCTTTGTTCCAAT+CGG + Chr3:62363662-62363681 MsG0380014911.01.T01:intron 50.0%
! GTTGAGCTAGCCTAACGGAA+GGG + Chr3:62363068-62363087 MsG0380014911.01.T01:intron 50.0%
! TTTTTCCCCCTGCCCAGTAT+TGG + Chr3:62363751-62363770 MsG0380014911.01.T01:intron 50.0%
!!! CGCCACTTTTGTACTGTCTG+TGG + Chr3:62363609-62363628 MsG0380014911.01.T01:CDS 50.0%
AATTCAAACCGCCGCACGTC+AGG + Chr3:62362553-62362572 MsG0380014911.01.T01:CDS 55.0%
ACTGGGCAGGGGGAAAAATG+TGG - Chr3:62363749-62363768 None:intergenic 55.0%
ACTTCATGGCAGCCTTCCAG+CGG + Chr3:62364365-62364384 MsG0380014911.01.T01:intron 55.0%
AGTACAAAAGTGGCGACGGG+CGG - Chr3:62363604-62363623 None:intergenic 55.0%
CAATCGTGCAAGAGCAGCCT+GGG - Chr3:62362638-62362657 None:intergenic 55.0%
CAGGTGGGCAATTCCACTGA+AGG + Chr3:62365158-62365177 MsG0380014911.01.T01:intron 55.0%
CTTCAGTGGAATTGCCCACC+TGG - Chr3:62365160-62365179 None:intergenic 55.0%
GCGCACACCACATCTAACAC+AGG - Chr3:62363651-62363670 None:intergenic 55.0%
GTTGTCGGAGCTAGCAAGTG+CGG - Chr3:62362611-62362630 None:intergenic 55.0%
! AGCAAGTGCGGCGACCATTT+TGG - Chr3:62362599-62362618 None:intergenic 55.0%
! CGTTGAGCTAGCCTAACGGA+AGG + Chr3:62363067-62363086 MsG0380014911.01.T01:intron 55.0%
CCAATCGTGCAAGAGCAGCC+TGG - Chr3:62362639-62362658 None:intergenic 60.0%
CCAGGCTGCTCTTGCACGAT+TGG + Chr3:62362636-62362655 MsG0380014911.01.T01:CDS 60.0%
TTCGTGTTCGGCCTGACGTG+CGG - Chr3:62362567-62362586 None:intergenic 60.0%
AGCAGCCTGGGTGCGGTTGT+CGG - Chr3:62362626-62362645 None:intergenic 65.0%
GTGCAAGAGCAGCCTGGGTG+CGG - Chr3:62362633-62362652 None:intergenic 65.0%
TAGCTCCGACAACCGCACCC+AGG + Chr3:62362618-62362637 MsG0380014911.01.T01:CDS 65.0%
CGACGGGCGGTTGAGCTTGG+AGG - Chr3:62363591-62363610 None:intergenic 70.0%
GTGTTCGGCCTGACGTGCGG+CGG - Chr3:62362564-62362583 None:intergenic 70.0%
TGGCGACGGGCGGTTGAGCT+TGG - Chr3:62363594-62363613 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 62362535 62365818 62362535 ID=MsG0380014911.01;Name=MsG0380014911.01
Chr3 mRNA 62362535 62365818 62362535 ID=MsG0380014911.01.T01;Parent=MsG0380014911.01;Name=MsG0380014911.01.T01;_AED=0.47;_eAED=0.65;_QI=0|0|0|1|1|1|3|0|150
Chr3 exon 62362535 62362745 62362535 ID=MsG0380014911.01.T01:exon:29476;Parent=MsG0380014911.01.T01
Chr3 exon 62363532 62363662 62363532 ID=MsG0380014911.01.T01:exon:29477;Parent=MsG0380014911.01.T01
Chr3 exon 62365708 62365818 62365708 ID=MsG0380014911.01.T01:exon:29478;Parent=MsG0380014911.01.T01
Chr3 CDS 62362535 62362745 62362535 ID=MsG0380014911.01.T01:cds;Parent=MsG0380014911.01.T01
Chr3 CDS 62363532 62363662 62363532 ID=MsG0380014911.01.T01:cds;Parent=MsG0380014911.01.T01
Chr3 CDS 62365708 62365818 62365708 ID=MsG0380014911.01.T01:cds;Parent=MsG0380014911.01.T01
Gene Sequence

>MsG0380014911.01.T01

ATGGAGGAAGATGGTTCGAATTCAAACCGCCGCACGTCAGGCCGAACACGAAAAGTTGCTTCCAAAATGGTCGCCGCACTTGCTAGCTCCGACAACCGCACCCAGGCTGCTCTTGCACGATTGGATGCTTTGGAGAATGACAATGCTGGATTTGAAGTTGCAGATCCCAATCTTGATGATGATGAAGCTTCTCTTGATGATGATGATCAAGGCAAACTTAGAATCATTGCCACCACATGTTCCACATATTGGAAAGCAGCTGTTGGACCTCCAAGCTCAACCGCCCGTCGCCACTTTTGTACTGTCTGTGGTTCTCTGCCAATTACACCTGTGTTAGATGTGGAAAGTCAAACTACTATGGGAAAGTTAAAGTCAGTGGATATTGTTGAGATTAGTCTCAAATTGCAGGCTACCCCAAACGAGACCAAGTTCTACTCATCGTATCTTCAATGA
Protein sequence

>MsG0380014911.01.T01

MEEDGSNSNRRTSGRTRKVASKMVAALASSDNRTQAALARLDALENDNAGFEVADPNLDDDEASLDDDDQGKLRIIATTCSTYWKAAVGPPSSTARRHFCTVCGSLPITPVLDVESQTTMGKLKSVDIVEISLKLQATPNETKFYSSYLQ*