AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015094.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015094.01.T01 MTR_3g062510 98.333 180 3 0 1 180 1 180 2.76e-125 358
MsG0380015094.01.T01 MTR_3g062510 98.333 180 3 0 1 180 1 180 2.54e-124 357
MsG0380015094.01.T01 MTR_7g099640 34.965 143 89 2 41 180 67 208 1.51e-21 91.3
MsG0380015094.01.T01 MTR_7g099640 36.111 144 87 3 40 180 67 208 1.66e-21 91.3
MsG0380015094.01.T01 MTR_1g069105 34.965 143 89 2 41 180 68 209 2.68e-21 90.5
MsG0380015094.01.T01 MTR_1g069105 36.111 144 87 3 40 180 68 209 4.87e-21 89.7
MsG0380015094.01.T01 MTR_1g083330 23.077 182 118 3 27 186 14 195 5.09e-11 61.2
MsG0380015094.01.T03 MTR_3g062510 98.333 180 3 0 1 180 1 180 2.76e-125 358
MsG0380015094.01.T03 MTR_3g062510 98.333 180 3 0 1 180 1 180 2.54e-124 357
MsG0380015094.01.T03 MTR_7g099640 34.965 143 89 2 41 180 67 208 1.51e-21 91.3
MsG0380015094.01.T03 MTR_7g099640 36.111 144 87 3 40 180 67 208 1.66e-21 91.3
MsG0380015094.01.T03 MTR_1g069105 34.965 143 89 2 41 180 68 209 2.68e-21 90.5
MsG0380015094.01.T03 MTR_1g069105 36.111 144 87 3 40 180 68 209 4.87e-21 89.7
MsG0380015094.01.T03 MTR_1g083330 23.077 182 118 3 27 186 14 195 5.09e-11 61.2
MsG0380015094.01.T02 MTR_3g062510 98.333 180 3 0 1 180 1 180 2.76e-125 358
MsG0380015094.01.T02 MTR_3g062510 98.333 180 3 0 1 180 1 180 2.54e-124 357
MsG0380015094.01.T02 MTR_7g099640 34.965 143 89 2 41 180 67 208 1.51e-21 91.3
MsG0380015094.01.T02 MTR_7g099640 36.111 144 87 3 40 180 67 208 1.66e-21 91.3
MsG0380015094.01.T02 MTR_1g069105 34.965 143 89 2 41 180 68 209 2.68e-21 90.5
MsG0380015094.01.T02 MTR_1g069105 36.111 144 87 3 40 180 68 209 4.87e-21 89.7
MsG0380015094.01.T02 MTR_1g083330 23.077 182 118 3 27 186 14 195 5.09e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015094.01.T01 AT5G58290 80.952 189 19 4 1 183 1 178 5.05e-98 290
MsG0380015094.01.T01 AT2G20140 34.337 166 101 4 18 180 46 206 4.72e-22 92.8
MsG0380015094.01.T01 AT4G29040 34.337 166 101 4 18 180 46 206 4.91e-22 92.8
MsG0380015094.01.T01 AT1G09100 22.941 170 110 2 30 178 17 186 8.74e-11 60.5
MsG0380015094.01.T03 AT5G58290 80.952 189 19 4 1 183 1 178 5.05e-98 290
MsG0380015094.01.T03 AT2G20140 34.337 166 101 4 18 180 46 206 4.72e-22 92.8
MsG0380015094.01.T03 AT4G29040 34.337 166 101 4 18 180 46 206 4.91e-22 92.8
MsG0380015094.01.T03 AT1G09100 22.941 170 110 2 30 178 17 186 8.74e-11 60.5
MsG0380015094.01.T02 AT5G58290 80.952 189 19 4 1 183 1 178 5.05e-98 290
MsG0380015094.01.T02 AT2G20140 34.337 166 101 4 18 180 46 206 4.72e-22 92.8
MsG0380015094.01.T02 AT4G29040 34.337 166 101 4 18 180 46 206 4.91e-22 92.8
MsG0380015094.01.T02 AT1G09100 22.941 170 110 2 30 178 17 186 8.74e-11 60.5

Find 0 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAAATTATAAAATTATGA+AGG + Chr3:65085969-65085988 None:intergenic 10.0%
!!! AATTATAGTATTTTTGATTT+TGG - Chr3:65086364-65086383 MsG0380015094.01.T03:intron 10.0%
!!! ATATATTTCTAATTTTCAAT+TGG - Chr3:65086108-65086127 MsG0380015094.01.T03:intron 10.0%
!!! TATATTTCTAATTTTCAATT+GGG - Chr3:65086109-65086128 MsG0380015094.01.T03:intron 10.0%
!!! TTTATAATTTGTTTTTGATT+GGG - Chr3:65085976-65085995 MsG0380015094.01.T03:intron 10.0%
!!! TTTTATAATTTGTTTTTGAT+TGG - Chr3:65085975-65085994 MsG0380015094.01.T03:intron 10.0%
!! ATATTTAAACCATTAAAGAT+TGG - Chr3:65086710-65086729 MsG0380015094.01.T03:CDS 15.0%
!! TAAAATCATATTTAGATCTA+GGG + Chr3:65086336-65086355 None:intergenic 15.0%
!!! ATATTTCTAATTTTCAATTG+GGG - Chr3:65086110-65086129 MsG0380015094.01.T03:intron 15.0%
!!! CATTTTAAACTATATTTTTG+TGG - Chr3:65087121-65087140 MsG0380015094.01.T03:CDS 15.0%
!! ATCAAAAATACTATAATTGC+AGG + Chr3:65086362-65086381 None:intergenic 20.0%
!! ATCAATCATTTACTAATTGA+AGG + Chr3:65086051-65086070 None:intergenic 20.0%
!! CTAAAATCATATTTAGATCT+AGG + Chr3:65086337-65086356 None:intergenic 20.0%
!! GAAAAATGTTGAGTTTATTT+GGG - Chr3:65086816-65086835 MsG0380015094.01.T03:CDS 20.0%
!! TGAAAAATGTTGAGTTTATT+TGG - Chr3:65086815-65086834 MsG0380015094.01.T03:CDS 20.0%
!! TTAGTAAATGATTGATTGTT+AGG - Chr3:65086055-65086074 MsG0380015094.01.T03:intron 20.0%
!!! AGCAATTATAGTGTTTTTTT+TGG + Chr3:65086547-65086566 None:intergenic 20.0%
!!! ATATGATTTTGATCTCTTTT+AGG - Chr3:65087162-65087181 MsG0380015094.01.T03:intron 20.0%
!!! ATGCTAAATTATTGATTCTA+GGG - Chr3:65087013-65087032 MsG0380015094.01.T03:CDS 20.0%
!!! GCAATTATAGTGTTTTTTTT+GGG + Chr3:65086546-65086565 None:intergenic 20.0%
!!! TATGCTAAATTATTGATTCT+AGG - Chr3:65087012-65087031 MsG0380015094.01.T03:CDS 20.0%
! AAGAGATCAAAATCATATCA+AGG + Chr3:65087160-65087179 None:intergenic 25.0%
! AGAGATCAAAATCATATCAA+GGG + Chr3:65087159-65087178 None:intergenic 25.0%
! CTAACATTATAAGTAACATC+AGG + Chr3:65085944-65085963 None:intergenic 25.0%
! TACTCTGAATTTATCCAAAT+AGG - Chr3:65086310-65086329 MsG0380015094.01.T03:intron 25.0%
! TGATTGAATTGCTAAATCTA+GGG - Chr3:65086008-65086027 MsG0380015094.01.T03:intron 25.0%
! TTGATTGAATTGCTAAATCT+AGG - Chr3:65086007-65086026 MsG0380015094.01.T03:intron 25.0%
!! GATTAGAGAATTTGGAATTA+GGG + Chr3:65085440-65085459 None:intergenic 25.0%
!! TGATTAGAGAATTTGGAATT+AGG + Chr3:65085441-65085460 None:intergenic 25.0%
!!! TGCTAAATTATTGATTCTAG+GGG - Chr3:65087014-65087033 MsG0380015094.01.T03:CDS 25.0%
!!! TTTGATCTCTTTTAGGATAT+TGG - Chr3:65087169-65087188 MsG0380015094.01.T03:intron 25.0%
AAAATCATATCAAGGGAGAA+TGG + Chr3:65087152-65087171 None:intergenic 30.0%
AAGTATATGGAATGAAGTGA+GGG + Chr3:65085375-65085394 None:intergenic 30.0%
CGTAAGTTGTTTATCCAAAT+AGG - Chr3:65086265-65086284 MsG0380015094.01.T03:intron 30.0%
GGGTTTGATTATTAGGTTTA+GGG - Chr3:65086130-65086149 MsG0380015094.01.T03:intron 30.0%
GTCATTGTCTCAAAATTTAG+CGG + Chr3:65086602-65086621 None:intergenic 30.0%
TAAACCATTAAAGATTGGAG+TGG - Chr3:65086715-65086734 MsG0380015094.01.T03:CDS 30.0%
TCAATTGGGGTTTGATTATT+AGG - Chr3:65086123-65086142 MsG0380015094.01.T03:intron 30.0%
! AGAATTTGGAATTAGGGTTT+CGG + Chr3:65085434-65085453 None:intergenic 30.0%
! CCACATAGTATGATTTTATC+GGG - Chr3:65086466-65086485 MsG0380015094.01.T03:intron 30.0%
! GCCACATAGTATGATTTTAT+CGG - Chr3:65086465-65086484 MsG0380015094.01.T03:intron 30.0%
! TACGTTGAAACTGAAAGTAT+AGG - Chr3:65087050-65087069 MsG0380015094.01.T03:CDS 30.0%
! TGAAAGTATAGGTCATTATG+AGG - Chr3:65087061-65087080 MsG0380015094.01.T03:CDS 30.0%
! TTTTAGTCTCTAACATCATG+TGG + Chr3:65086493-65086512 None:intergenic 30.0%
!! GATTTTGAGTACGATTAATC+GGG - Chr3:65085805-65085824 MsG0380015094.01.T03:intron 30.0%
!! GGATTTTGAGTACGATTAAT+CGG - Chr3:65085804-65085823 MsG0380015094.01.T03:intron 30.0%
!! TTGCTTTTAGGTGAAGTATA+TGG + Chr3:65085388-65085407 None:intergenic 30.0%
!!! ATTGCTTTTAGTCTTGATGT+TGG - Chr3:65086434-65086453 MsG0380015094.01.T03:intron 30.0%
AACTAAACCTAGAGCCTATT+TGG + Chr3:65086282-65086301 None:intergenic 35.0%
AAGACGGTGATTAGAGAATT+TGG + Chr3:65085448-65085467 None:intergenic 35.0%
AGAATTCAAGTGTCTTTGGT+CGG - Chr3:65086839-65086858 MsG0380015094.01.T03:CDS 35.0%
ATATGCCCGTACTTTAATAG+TGG - Chr3:65086885-65086904 MsG0380015094.01.T03:CDS 35.0%
CACGAGCTATACAAACAAAT+TGG - Chr3:65087251-65087270 MsG0380015094.01.T03:five_prime_UTR 35.0%
CCCGATAAAATCATACTATG+TGG + Chr3:65086469-65086488 None:intergenic 35.0%
GAAGTATATGGAATGAAGTG+AGG + Chr3:65085376-65085395 None:intergenic 35.0%
GGGGTTTGATTATTAGGTTT+AGG - Chr3:65086129-65086148 MsG0380015094.01.T03:intron 35.0%
TCGGTAGTTGCAATATAAGT+TGG - Chr3:65086858-65086877 MsG0380015094.01.T03:CDS 35.0%
TGAACTATATTCGTAACCTC+AGG + Chr3:65086975-65086994 None:intergenic 35.0%
TGCTCTCCACTATTAAAGTA+CGG + Chr3:65086894-65086913 None:intergenic 35.0%
TGTTTATCCAAATAGGCTCT+AGG - Chr3:65086272-65086291 MsG0380015094.01.T03:intron 35.0%
! AGATGGTTGATACCAATAAC+GGG - Chr3:65085744-65085763 MsG0380015094.01.T03:intron 35.0%
! ATTTAGATCTAGGGCCTATT+TGG + Chr3:65086327-65086346 None:intergenic 35.0%
! ATTTTTCCTTGCAATTGCTG+TGG + Chr3:65086689-65086708 None:intergenic 35.0%
! GAGATGGTTGATACCAATAA+CGG - Chr3:65085743-65085762 MsG0380015094.01.T03:intron 35.0%
!! AGTCTTGATGTTGGCTTATT+GGG - Chr3:65086443-65086462 MsG0380015094.01.T03:intron 35.0%
!! TAATTGCTTGCTATGATGCA+TGG - Chr3:65086559-65086578 MsG0380015094.01.T03:intron 35.0%
!! TAGTCTTGATGTTGGCTTAT+TGG - Chr3:65086442-65086461 MsG0380015094.01.T03:intron 35.0%
!! TATTGATTCTAGGGGATTGT+GGG - Chr3:65087022-65087041 MsG0380015094.01.T03:CDS 35.0%
!! TTATTGATTCTAGGGGATTG+TGG - Chr3:65087021-65087040 MsG0380015094.01.T03:CDS 35.0%
!! TTGGGATTGGAATTGCTTTT+AGG + Chr3:65085400-65085419 None:intergenic 35.0%
!!! CCTGTTTTGATTGGCTATTT+GGG - Chr3:65086153-65086172 MsG0380015094.01.T03:intron 35.0%
!!! GATCTCTTTTAGGATATTGG+AGG - Chr3:65087172-65087191 MsG0380015094.01.T03:intron 35.0%
AGATCCAACAATCCCGTTAT+TGG + Chr3:65085759-65085778 None:intergenic 40.0%
AGGATGTGATATCCAAAAGC+AGG - Chr3:65087192-65087211 MsG0380015094.01.T03:five_prime_UTR 40.0%
ATAAACTGACCGATCACAAG+CGG + Chr3:65085722-65085741 None:intergenic 40.0%
CAATACTTGTAGATGAGCTC+GGG - Chr3:65086912-65086931 MsG0380015094.01.T03:CDS 40.0%
CCCAAATAGCCAATCAAAAC+AGG + Chr3:65086156-65086175 None:intergenic 40.0%
CTGGGTCGAATTATTATGTG+AGG - Chr3:65085783-65085802 MsG0380015094.01.T03:intron 40.0%
GCAATACTTGTAGATGAGCT+CGG - Chr3:65086911-65086930 MsG0380015094.01.T03:CDS 40.0%
GCTCTCCACTATTAAAGTAC+GGG + Chr3:65086893-65086912 None:intergenic 40.0%
GGATATCGATGAATTCGAGT+TGG + Chr3:65085613-65085632 None:intergenic 40.0%
GGATTGTTGGATCTACTACT+GGG - Chr3:65085765-65085784 MsG0380015094.01.T03:intron 40.0%
GTGTCCACTCCAATCTTTAA+TGG + Chr3:65086722-65086741 None:intergenic 40.0%
TAATCACCGTCTTCAACCAT+GGG - Chr3:65085455-65085474 MsG0380015094.01.T03:intron 40.0%
TCTTGTTGATGTTCTTCCAC+CGG - Chr3:65085877-65085896 MsG0380015094.01.T03:intron 40.0%
TGGGAGAATTCAAGTGTCTT+TGG - Chr3:65086835-65086854 MsG0380015094.01.T03:CDS 40.0%
! ATTGATTCTAGGGGATTGTG+GGG - Chr3:65087023-65087042 MsG0380015094.01.T03:CDS 40.0%
! GATACCAATAACGGGATTGT+TGG - Chr3:65085752-65085771 MsG0380015094.01.T03:intron 40.0%
!! AATTAGGGTTTCGGTGTTGT+GGG + Chr3:65085425-65085444 None:intergenic 40.0%
!!! GCCTGTTTTGATTGGCTATT+TGG - Chr3:65086152-65086171 MsG0380015094.01.T03:intron 40.0%
CAATCTGTTCCGCTTGTGAT+CGG - Chr3:65085710-65085729 MsG0380015094.01.T03:intron 45.0%
CATATCAAGGGAGAATGGTC+AGG + Chr3:65087147-65087166 None:intergenic 45.0%
CCAAAAGCAGGAAATTCGTG+AGG - Chr3:65087204-65087223 MsG0380015094.01.T03:five_prime_UTR 45.0%
CGTCTTTGACGTACTCTTCT+TGG + Chr3:65085634-65085653 None:intergenic 45.0%
CTAATCACCGTCTTCAACCA+TGG - Chr3:65085454-65085473 MsG0380015094.01.T03:intron 45.0%
CTGACTAAGAAGCGAGATAC+TGG + Chr3:65085912-65085931 None:intergenic 45.0%
GAGATACTGGAATCAGCTTC+CGG + Chr3:65085899-65085918 None:intergenic 45.0%
GATCGGTCAGTTTATGGAGA+TGG - Chr3:65085727-65085746 MsG0380015094.01.T03:intron 45.0%
GCAAAGACACTGTTGATCGA+AGG + Chr3:65086667-65086686 None:intergenic 45.0%
GCTTGTGATCGGTCAGTTTA+TGG - Chr3:65085721-65085740 MsG0380015094.01.T03:intron 45.0%
GGGATTGTTGGATCTACTAC+TGG - Chr3:65085764-65085783 MsG0380015094.01.T03:intron 45.0%
GTGCTCAGGAAGAAGTCAAA+CGG - Chr3:65085684-65085703 MsG0380015094.01.T03:intron 45.0%
TCTTTGCCACAGCAATTGCA+AGG - Chr3:65086680-65086699 MsG0380015094.01.T03:intron 45.0%
! CCTCACGAATTTCCTGCTTT+TGG + Chr3:65087207-65087226 None:intergenic 45.0%
! CTATTGGTAGCTTGTGATCC+TGG - Chr3:65086941-65086960 MsG0380015094.01.T03:CDS 45.0%
! GGTTAGTTGCTGCGAAAACT+AGG - Chr3:65086076-65086095 MsG0380015094.01.T03:intron 45.0%
! TGAGCTCGGGAGTTTTCTAT+TGG - Chr3:65086925-65086944 MsG0380015094.01.T03:CDS 45.0%
! TTTTGGATCGAGAACCATCG+CGG + Chr3:65085486-65085505 None:intergenic 45.0%
!! AGGCTCTAGGTTTAGTTGCT+GGG - Chr3:65086285-65086304 MsG0380015094.01.T03:intron 45.0%
!! GAATTAGGGTTTCGGTGTTG+TGG + Chr3:65085426-65085445 None:intergenic 45.0%
!! GTTTCGGTGTTGTGGGATTT+GGG + Chr3:65085418-65085437 None:intergenic 45.0%
!! TAGGCTCTAGGTTTAGTTGC+TGG - Chr3:65086284-65086303 MsG0380015094.01.T03:intron 45.0%
!!! GGTTTAGGGCCTGTTTTGAT+TGG - Chr3:65086144-65086163 MsG0380015094.01.T03:intron 45.0%
ATACTGGAATCAGCTTCCGG+TGG + Chr3:65085896-65085915 None:intergenic 50.0%
ATCACTGTCCGTGTCAGACA+CGG - Chr3:65086635-65086654 MsG0380015094.01.T03:intron 50.0%
CGATCACAAGCGGAACAGAT+TGG + Chr3:65085712-65085731 None:intergenic 50.0%
GAGAAAGAAAGGGAAGGTGG+TGG + Chr3:65085521-65085540 None:intergenic 50.0%
GAGGAACCCATGGTTGAAGA+CGG + Chr3:65085464-65085483 None:intergenic 50.0%
GAGGAGAAAGAAAGGGAAGG+TGG + Chr3:65085524-65085543 None:intergenic 50.0%
TAACCTCAGGCATGAGAACC+AGG + Chr3:65086962-65086981 None:intergenic 50.0%
TATAGCTCGTGATGCGTGAG+AGG + Chr3:65087242-65087261 None:intergenic 50.0%
! AGAAAGGGAAGGTGGTGGTT+CGG + Chr3:65085516-65085535 None:intergenic 50.0%
! GGGATTTGAGGAGAGTGTAG+AGG + Chr3:65085583-65085602 None:intergenic 50.0%
! GGTGTTGTGGGATTTGGGAT+TGG + Chr3:65085413-65085432 None:intergenic 50.0%
!! CGATGAATTCGAGTTGGCGT+TGG + Chr3:65085607-65085626 None:intergenic 50.0%
!! GAATTCGAGTTGGCGTTGGA+GGG + Chr3:65085603-65085622 None:intergenic 50.0%
!! GGTTTCGGTGTTGTGGGATT+TGG + Chr3:65085419-65085438 None:intergenic 50.0%
!! TGAATTCGAGTTGGCGTTGG+AGG + Chr3:65085604-65085623 None:intergenic 50.0%
!!! GCTTTTGAAACCGTCGGCTT+CGG - Chr3:65085829-65085848 MsG0380015094.01.T03:intron 50.0%
!!! TCGGGAGCTTTTGAAACCGT+CGG - Chr3:65085823-65085842 MsG0380015094.01.T03:intron 50.0%
GCAGGAAATTCGTGAGGCTG+TGG - Chr3:65087210-65087229 MsG0380015094.01.T03:five_prime_UTR 55.0%
GGGGAGGAGAAAGAAAGGGA+AGG + Chr3:65085527-65085546 None:intergenic 55.0%
GGTGGGGGAGGAGAAAGAAA+GGG + Chr3:65085531-65085550 None:intergenic 55.0%
TCACTGTCCGTGTCAGACAC+GGG - Chr3:65086636-65086655 MsG0380015094.01.T03:intron 55.0%
! GAGGAGAGTGTAGAGGTCGT+CGG + Chr3:65085576-65085595 None:intergenic 55.0%
! GATCCTGGTTCTCATGCCTG+AGG - Chr3:65086956-65086975 MsG0380015094.01.T03:CDS 55.0%
! GTTGGCGTTGGAGGGATTTG+AGG + Chr3:65085595-65085614 None:intergenic 55.0%
AACCATCGCGGAGGAACCCA+TGG + Chr3:65085474-65085493 None:intergenic 60.0%
AACCATGGGTTCCTCCGCGA+TGG - Chr3:65085469-65085488 MsG0380015094.01.T03:intron 60.0%
ACGCGAGCTTCTTCGTGCTC+AGG - Chr3:65085670-65085689 MsG0380015094.01.T03:intron 60.0%
AGTGTAGAGGTCGTCGGAGG+TGG + Chr3:65085570-65085589 None:intergenic 60.0%
CGGTGGGGGAGGAGAAAGAA+AGG + Chr3:65085532-65085551 None:intergenic 60.0%
GGTGGAGGAGGAATCGGTGT+CGG + Chr3:65085552-65085571 None:intergenic 60.0%
GTCGGAGGTGGAGGAGGAAT+CGG + Chr3:65085558-65085577 None:intergenic 60.0%
TGAAGCGCAACCGAAGCCGA+CGG + Chr3:65085842-65085861 None:intergenic 60.0%
TGGATCGAGAACCATCGCGG+AGG + Chr3:65085483-65085502 None:intergenic 60.0%
! GAGAGTGTAGAGGTCGTCGG+AGG + Chr3:65085573-65085592 None:intergenic 60.0%
!! AGGAGGAATCGGTGTCGGTG+GGG + Chr3:65085547-65085566 None:intergenic 60.0%
!! GAAGGTGGTGGTTCGGTGAG+GGG + Chr3:65085509-65085528 None:intergenic 60.0%
!! GAGGAGGAATCGGTGTCGGT+GGG + Chr3:65085548-65085567 None:intergenic 60.0%
!! GGAAGGTGGTGGTTCGGTGA+GGG + Chr3:65085510-65085529 None:intergenic 60.0%
!!! GGTGGTTCGGTGAGGGGTTT+TGG + Chr3:65085503-65085522 None:intergenic 60.0%
GGCGTGTCCCGTGTCTGACA+CGG + Chr3:65086646-65086665 None:intergenic 65.0%
GTAGAGGTCGTCGGAGGTGG+AGG + Chr3:65085567-65085586 None:intergenic 65.0%
!! GGAGGAATCGGTGTCGGTGG+GGG + Chr3:65085546-65085565 None:intergenic 65.0%
!! GGAGGAGGAATCGGTGTCGG+TGG + Chr3:65085549-65085568 None:intergenic 65.0%
!! GGGAAGGTGGTGGTTCGGTG+AGG + Chr3:65085511-65085530 None:intergenic 65.0%
GAGGTCGTCGGAGGTGGAGG+AGG + Chr3:65085564-65085583 None:intergenic 70.0%
!! GGAATCGGTGTCGGTGGGGG+AGG + Chr3:65085543-65085562 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 65085372 65087279 65085372 ID=MsG0380015094.01;Name=MsG0380015094.01
Chr3 mRNA 65085372 65087279 65085372 ID=MsG0380015094.01.T01;Parent=MsG0380015094.01;Name=MsG0380015094.01.T01;_AED=0.46;_eAED=0.46;_QI=101|0.8|0.83|1|0.6|0.5|6|0|193
Chr3 five_prime_UTR 65087179 65087279 65087179 ID=MsG0380015094.01.T01:five_prime_utr;Parent=MsG0380015094.01.T01
Chr3 CDS 65086693 65087178 65086693 ID=MsG0380015094.01.T01:cds;Parent=MsG0380015094.01.T01
Chr3 CDS 65085372 65085467 65085372 ID=MsG0380015094.01.T01:cds;Parent=MsG0380015094.01.T01
Chr3 mRNA 65085372 65087279 65085372 ID=MsG0380015094.01.T02;Parent=MsG0380015094.01;Name=MsG0380015094.01.T02;_AED=0.47;_eAED=0.49;_QI=101|0.75|0.6|1|0.5|0.4|5|0|193
Chr3 five_prime_UTR 65087179 65087279 65087179 ID=MsG0380015094.01.T02:five_prime_utr;Parent=MsG0380015094.01.T02
Chr3 CDS 65086693 65087178 65086693 ID=MsG0380015094.01.T02:cds;Parent=MsG0380015094.01.T02
Chr3 CDS 65085372 65085467 65085372 ID=MsG0380015094.01.T02:cds;Parent=MsG0380015094.01.T02
Chr3 mRNA 65085372 65087279 65085372 ID=MsG0380015094.01.T03;Parent=MsG0380015094.01;Name=MsG0380015094.01.T03;_AED=0.47;_eAED=0.50;_QI=101|1|0.75|1|0.66|0.5|4|0|193
Chr3 five_prime_UTR 65087179 65087279 65087179 ID=MsG0380015094.01.T03:five_prime_utr;Parent=MsG0380015094.01.T03
Chr3 CDS 65086693 65087178 65086693 ID=MsG0380015094.01.T03:cds;Parent=MsG0380015094.01.T03
Chr3 CDS 65085372 65085467 65085372 ID=MsG0380015094.01.T03:cds;Parent=MsG0380015094.01.T03
Gene Sequence

>MsG0380015094.01.T01

ATGGGTTCCTCCGCGATGGTTCTCGATCCAAAACCCCTCACCGAACCACCACCTTCCCTTTCTTTCTCCTCCCCCACCGACACCGATTCCTCCTCCACCTCCGACGACCTCTACACTCTCCTCAAATCCCTCCAACGCCAACTCGAATTCATCGATATCCAAGAAGAGTACGTCAAAGACGAACAAAAGAATCTCAAACGCGAGCTTCTTCGTGCTCAGGAAGAAGTCAAACGGATCCAATCTGTTCCGCTTGTGATCGGTCAGTTTATGGAGATGGTTGATACCAATAACGGGATTGTTGGATCTACTACTGGGTCGAATTATTATGTGAGGATTTTGAGTACGATTAATCGGGAGCTTTTGAAACCGTCGGCTTCGGTTGCGCTTCATCGTCATTCGAATGCTCTTGTTGATGTTCTTCCACCGGAAGCTGATTCCAGTATCTCGCTTCTTAGTCAGTCTGAGAAGCCTGATGTTACTTATAATGATATTGGAGGATGTGATATCCAAAAGCAGGAAATTCGTGAGGCTGTGGAGTTTACCTCTCACGCATCACGAGCTATACAAACAAATTGGTATTGA

>MsG0380015094.01.T03

ATGGGTTCCTCCGCGATGGTTCTCGATCCAAAACCCCTCACCGAACCACCACCTTCCCTTTCTTTCTCCTCCCCCACCGACACCGATTCCTCCTCCACCTCCGACGACCTCTACACTCTCCTCAAATCCCTCCAACGCCAACTCGAATTCATCGATATCCAAGAAGAGTACGTCAAAGACGAACAAAAGAATCTCAAACGCGAGCTTCTTCGTGCTCAGGAAGAAGTCAAACGGATCCAATCTGTTCCGCTTGTGATCGGTCAGTTTATGGAGATGGTTGATACCAATAACGGGATTGTTGGATCTACTACTGGGTCGAATTATTATGTGAGGATTTTGAGTACGATTAATCGGGAGCTTTTGAAACCGTCGGCTTCGGTTGCGCTTCATCGTCATTCGAATGCTCTTGTTGATGTTCTTCCACCGGAAGCTGATTCCAGTATCTCGCTTCTTAGTCAGTCTGAGAAGCCTGATGTTACTTATAATGATATTGGAGGATGTGATATCCAAAAGCAGGAAATTCGTGAGGCTGTGGAGTTTACCTCTCACGCATCACGAGCTATACAAACAAATTGGTATTGA

>MsG0380015094.01.T02

ATGGGTTCCTCCGCGATGGTTCTCGATCCAAAACCCCTCACCGAACCACCACCTTCCCTTTCTTTCTCCTCCCCCACCGACACCGATTCCTCCTCCACCTCCGACGACCTCTACACTCTCCTCAAATCCCTCCAACGCCAACTCGAATTCATCGATATCCAAGAAGAGTACGTCAAAGACGAACAAAAGAATCTCAAACGCGAGCTTCTTCGTGCTCAGGAAGAAGTCAAACGGATCCAATCTGTTCCGCTTGTGATCGGTCAGTTTATGGAGATGGTTGATACCAATAACGGGATTGTTGGATCTACTACTGGGTCGAATTATTATGTGAGGATTTTGAGTACGATTAATCGGGAGCTTTTGAAACCGTCGGCTTCGGTTGCGCTTCATCGTCATTCGAATGCTCTTGTTGATGTTCTTCCACCGGAAGCTGATTCCAGTATCTCGCTTCTTAGTCAGTCTGAGAAGCCTGATGTTACTTATAATGATATTGGAGGATGTGATATCCAAAAGCAGGAAATTCGTGAGGCTGTGGAGTTTACCTCTCACGCATCACGAGCTATACAAACAAATTGGTATTGA
Protein sequence

>MsG0380015094.01.T01

MGSSAMVLDPKPLTEPPPSLSFSSPTDTDSSSTSDDLYTLLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDTNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVEFTSHASRAIQTNWY*

>MsG0380015094.01.T03

MGSSAMVLDPKPLTEPPPSLSFSSPTDTDSSSTSDDLYTLLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDTNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVEFTSHASRAIQTNWY*

>MsG0380015094.01.T02

MGSSAMVLDPKPLTEPPPSLSFSSPTDTDSSSTSDDLYTLLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDTNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVEFTSHASRAIQTNWY*