Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015442.01.T01 | XP_013460747.1 | 95.046 | 323 | 7 | 5 | 1 | 320 | 1 | 317 | 0 | 584 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015442.01.T01 | A0A072UZB5 | 95.046 | 323 | 7 | 5 | 1 | 320 | 1 | 317 | 0.0 | 584 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0380015442.01 | MsG0880044589.01 | 0.840738 | 7.257229e-58 | 1.043409e-54 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015442.01.T01 | MTR_3g070165 | 95.046 | 323 | 7 | 5 | 1 | 320 | 1 | 317 | 0.0 | 584 |
| MsG0380015442.01.T01 | MTR_1g032230 | 80.165 | 121 | 21 | 2 | 200 | 320 | 155 | 272 | 2.75e-44 | 152 |
| MsG0380015442.01.T01 | MTR_6g045643 | 31.511 | 311 | 162 | 8 | 13 | 305 | 6 | 283 | 1.41e-30 | 117 |
| MsG0380015442.01.T01 | MTR_1g022275 | 33.858 | 127 | 82 | 1 | 13 | 137 | 6 | 132 | 8.27e-23 | 97.4 |
| MsG0380015442.01.T01 | MTR_3g463690 | 81.081 | 74 | 11 | 2 | 195 | 268 | 54 | 124 | 3.41e-17 | 77.0 |
| MsG0380015442.01.T01 | MTR_7g115480 | 34.074 | 135 | 74 | 5 | 14 | 138 | 13 | 142 | 1.60e-13 | 70.9 |
| MsG0380015442.01.T01 | MTR_1g080360 | 31.361 | 169 | 101 | 7 | 14 | 173 | 11 | 173 | 1.94e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015442.01.T01 | AT1G07310 | 53.147 | 143 | 59 | 2 | 1 | 140 | 1 | 138 | 9.89e-43 | 151 |
| MsG0380015442.01.T01 | AT5G23950 | 37.500 | 128 | 77 | 2 | 13 | 137 | 7 | 134 | 9.00e-24 | 97.4 |
| MsG0380015442.01.T01 | AT5G23950 | 37.500 | 128 | 77 | 2 | 13 | 137 | 23 | 150 | 1.94e-23 | 97.1 |
| MsG0380015442.01.T01 | AT2G13350 | 32.061 | 131 | 81 | 3 | 14 | 141 | 10 | 135 | 1.46e-12 | 68.2 |
Find 123 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGCTGTTGGTGCTGCTGC+TGG | 0.076237 | 3:+70256743 | MsG0380015442.01.T01:CDS |
| AAGGAAGGATTTGAAGAATT+AGG | 0.174752 | 3:-70256437 | None:intergenic |
| TAATCAAATATTTGTGATAT+TGG | 0.232143 | 3:-70256371 | None:intergenic |
| TGGCTGTTGGTGCTGCTGCT+GGG | 0.233355 | 3:+70256744 | MsG0380015442.01.T01:CDS |
| TGGTGCTGCTGCTGGGGCGC+TGG | 0.267876 | 3:+70256751 | MsG0380015442.01.T01:CDS |
| TCCAGTGGCGGTTACTTTCC+CGG | 0.272953 | 3:+70256551 | MsG0380015442.01.T01:CDS |
| GAGGCCAAAAGGCGGTAAAA+TGG | 0.280849 | 3:+70256706 | MsG0380015442.01.T01:CDS |
| GTTGTTATTATCAGAGTAAT+TGG | 0.288475 | 3:-70256525 | None:intergenic |
| AGGAAGGATTTGAAGAATTA+GGG | 0.293121 | 3:-70256436 | None:intergenic |
| GCCACCAAATCCGACGATTC+TGG | 0.308645 | 3:+70256074 | MsG0380015442.01.T01:CDS |
| GGATTTGAAGAATTAGGGTT+AGG | 0.316561 | 3:-70256431 | None:intergenic |
| GAAGAATTAGGGTTAGGGTT+AGG | 0.317512 | 3:-70256425 | None:intergenic |
| TTAGGAGCTGGGCTGGCTGT+TGG | 0.318044 | 3:+70256731 | MsG0380015442.01.T01:CDS |
| AGAGCGTAGGCTCGCGGATA+TGG | 0.318191 | 3:+70256808 | MsG0380015442.01.T01:CDS |
| GGTAAAATGGGCTTAGGAGC+TGG | 0.324106 | 3:+70256719 | MsG0380015442.01.T01:CDS |
| GGCGCTGGGTGGACTTGCTC+TGG | 0.326367 | 3:+70256766 | MsG0380015442.01.T01:CDS |
| TCAAACCCTACGTCGTCTTC+TGG | 0.326697 | 3:+70256030 | MsG0380015442.01.T01:CDS |
| GGCCGTGGATGCGGCGGTGG+TGG | 0.328622 | 3:-70256599 | None:intergenic |
| GGTGCTGCTGCTGGGGCGCT+GGG | 0.338151 | 3:+70256752 | MsG0380015442.01.T01:CDS |
| AAGAATTAGGGTTAGGGTTA+GGG | 0.354998 | 3:-70256424 | None:intergenic |
| GTTACCAGAATCGTCGGATT+TGG | 0.369340 | 3:-70256078 | None:intergenic |
| TTAGGGTTAGGGTTAGGAAA+AGG | 0.375217 | 3:-70256413 | None:intergenic |
| TACTTTCCCGGCTATTATCC+TGG | 0.379552 | 3:+70256563 | MsG0380015442.01.T01:CDS |
| GCTTCTGCGAGAGATGATTA+TGG | 0.384692 | 3:+70256845 | MsG0380015442.01.T01:CDS |
| GTGAAACGTTCGTTCCAAAC+GGG | 0.388434 | 3:-70256107 | None:intergenic |
| TTTAGGTGTATCAGAGGGTT+TGG | 0.391011 | 3:-70256186 | None:intergenic |
| GCGGAGGAGGAGAGCGGCCA+AGG | 0.395404 | 3:-70256340 | None:intergenic |
| GGCTGTTGGTGCTGCTGCTG+GGG | 0.397402 | 3:+70256745 | MsG0380015442.01.T01:CDS |
| TTAGGGTTAGGAAAAGGGTT+AGG | 0.401809 | 3:-70256407 | None:intergenic |
| TTAGGGTTAGGGTTAGGGTT+AGG | 0.402041 | 3:-70256419 | None:intergenic |
| TCAAGGGTGAGGGTGGAATC+TGG | 0.414969 | 3:-70256152 | None:intergenic |
| AGGGTGGCGACGAGGGGTTT+AGG | 0.421076 | 3:-70256203 | None:intergenic |
| CGTGGATGCGGCGGTGGTGG+TGG | 0.421610 | 3:-70256596 | None:intergenic |
| TAGGGTTAGGGTTAGGAAAA+GGG | 0.431404 | 3:-70256412 | None:intergenic |
| CGGCCTTTCTTCGAACGTAC+TGG | 0.442339 | 3:+70256617 | MsG0380015442.01.T01:CDS |
| CATCTCAAAATTAGCCTCCT+TGG | 0.444416 | 3:+70256323 | MsG0380015442.01.T01:CDS |
| ATTCCCCGTCGTTCGACCCT+CGG | 0.447253 | 3:+70256280 | MsG0380015442.01.T01:CDS |
| TAGGGTTAGGAAAAGGGTTA+GGG | 0.447717 | 3:-70256406 | None:intergenic |
| CGACCCGAGGGTCGAACGAC+GGG | 0.447749 | 3:-70256284 | None:intergenic |
| TTCCCCGTCGTTCGACCCTC+GGG | 0.448772 | 3:+70256281 | MsG0380015442.01.T01:CDS |
| GTTTGGAATGGAAGATTTCA+AGG | 0.449335 | 3:-70256169 | None:intergenic |
| AAAGGCCGTGGATGCGGCGG+TGG | 0.449486 | 3:-70256602 | None:intergenic |
| ACCAGAATCGTCGGATTTGG+TGG | 0.451531 | 3:-70256075 | None:intergenic |
| TCGACCCTCGGGTCGACCGC+AGG | 0.451740 | 3:+70256292 | MsG0380015442.01.T01:CDS |
| GTAAAATGGGCTTAGGAGCT+GGG | 0.453520 | 3:+70256720 | MsG0380015442.01.T01:CDS |
| AGGCCAAAAGGCGGTAAAAT+GGG | 0.457063 | 3:+70256707 | MsG0380015442.01.T01:CDS |
| GCTGCTGCTGGGGCGCTGGG+TGG | 0.457405 | 3:+70256755 | MsG0380015442.01.T01:CDS |
| GTGAGGGTGGAATCTGGAAG+AGG | 0.460149 | 3:-70256146 | None:intergenic |
| CTTCCAGTACGTTCGAAGAA+AGG | 0.460738 | 3:-70256620 | None:intergenic |
| GGGGAATTTCTTGACGATTG+TGG | 0.465481 | 3:-70256264 | None:intergenic |
| TCTGGAAGAGGGAGAGAGAG+AGG | 0.466491 | 3:-70256134 | None:intergenic |
| GATTTGAAGAATTAGGGTTA+GGG | 0.472057 | 3:-70256430 | None:intergenic |
| ATTGGTGGCGATGGCGGAGG+AGG | 0.473138 | 3:-70256353 | None:intergenic |
| GCCGGGAAAGTAACCGCCAC+TGG | 0.481445 | 3:-70256552 | None:intergenic |
| TTTCCCCTGCGGTCGACCCG+AGG | 0.486560 | 3:-70256297 | None:intergenic |
| TGAGGGTGGAATCTGGAAGA+GGG | 0.492481 | 3:-70256145 | None:intergenic |
| TCGAAGAAAGGCCGTGGATG+CGG | 0.501968 | 3:-70256608 | None:intergenic |
| TCAAATATTTGTGATATTGG+TGG | 0.502304 | 3:-70256368 | None:intergenic |
| GGTGGACTTGCTCTGGAAGA+AGG | 0.504623 | 3:+70256773 | MsG0380015442.01.T01:CDS |
| TCGTTTGATCCGAGGCCAAA+AGG | 0.505467 | 3:+70256695 | MsG0380015442.01.T01:CDS |
| AGTGAAACGTTCGTTCCAAA+CGG | 0.507307 | 3:-70256108 | None:intergenic |
| CGACCCTCGGGTCGACCGCA+GGG | 0.509439 | 3:+70256293 | MsG0380015442.01.T01:CDS |
| ATTGTGGAGTGATGAAGGTC+AGG | 0.511229 | 3:-70256248 | None:intergenic |
| AATGGAAGATTTCAAGGGTG+AGG | 0.517676 | 3:-70256163 | None:intergenic |
| TTGGTGGCGAGACGACGGTC+AGG | 0.522193 | 3:-70256059 | None:intergenic |
| TAATTGGTGTAGTAATTGTA+AGG | 0.523238 | 3:-70256509 | None:intergenic |
| CCTCTGTAATAAACAAAGGA+AGG | 0.524539 | 3:-70256452 | None:intergenic |
| AAAGGCGGTAAAATGGGCTT+AGG | 0.525264 | 3:+70256713 | MsG0380015442.01.T01:CDS |
| GAAGATTTCAAGGGTGAGGG+TGG | 0.525665 | 3:-70256159 | None:intergenic |
| AATGGGCTTAGGAGCTGGGC+TGG | 0.527327 | 3:+70256724 | MsG0380015442.01.T01:CDS |
| AGCACCACCAGGATAATAGC+CGG | 0.537233 | 3:-70256570 | None:intergenic |
| AAGACGGAGGGTGGCGACGA+GGG | 0.538928 | 3:-70256210 | None:intergenic |
| ACTGGAAGTTATGCTGCTGC+TGG | 0.539584 | 3:+70256635 | MsG0380015442.01.T01:CDS |
| AGACGGAGGGTGGCGACGAG+GGG | 0.544160 | 3:-70256209 | None:intergenic |
| GATATTGGTGGCGATGGCGG+AGG | 0.547136 | 3:-70256356 | None:intergenic |
| CCTTCCTTTGTTTATTACAG+AGG | 0.547419 | 3:+70256452 | MsG0380015442.01.T01:CDS |
| TAAGGTGAAGGTGGTGGAGA+AGG | 0.551750 | 3:-70256491 | None:intergenic |
| TGACGATTGTGGAGTGATGA+AGG | 0.551893 | 3:-70256253 | None:intergenic |
| GTGTATCAGAGGGTTTGGAA+TGG | 0.552294 | 3:-70256181 | None:intergenic |
| CTGGAAGAGGGAGAGAGAGA+GGG | 0.556639 | 3:-70256133 | None:intergenic |
| CACCACCACCGCCGCATCCA+CGG | 0.557607 | 3:+70256597 | MsG0380015442.01.T01:CDS |
| TTCCCCTGCGGTCGACCCGA+GGG | 0.559120 | 3:-70256296 | None:intergenic |
| TAATTGTAAGGTGAAGGTGG+TGG | 0.564902 | 3:-70256497 | None:intergenic |
| GATTGTGAGGTCGAGATCGA+TGG | 0.566508 | 3:-70255961 | None:intergenic |
| GAATATTCAAGCGGCGCAGA+CGG | 0.570476 | 3:-70256668 | None:intergenic |
| ATGGAAGATTTCAAGGGTGA+GGG | 0.571075 | 3:-70256162 | None:intergenic |
| ATTTGTGATATTGGTGGCGA+TGG | 0.576104 | 3:-70256362 | None:intergenic |
| TCGAGCCAGAAGACGACGTA+GGG | 0.579373 | 3:-70256035 | None:intergenic |
| GTATGAAGAGCGTAGGCTCG+CGG | 0.582107 | 3:+70256802 | MsG0380015442.01.T01:CDS |
| GAGGAGGAGAGCGGCCAAGG+AGG | 0.583527 | 3:-70256337 | None:intergenic |
| GTACGTTCGAAGAAAGGCCG+TGG | 0.583737 | 3:-70256614 | None:intergenic |
| AGCGGCGCAGACGGTCCACT+CGG | 0.585090 | 3:-70256659 | None:intergenic |
| GCACCACCAGGATAATAGCC+GGG | 0.589598 | 3:-70256569 | None:intergenic |
| GACCCTCGGGTCGACCGCAG+GGG | 0.593389 | 3:+70256294 | MsG0380015442.01.T01:CDS |
| ATTCGTCCTCGTTTGATCCG+AGG | 0.596452 | 3:+70256687 | MsG0380015442.01.T01:CDS |
| GTGTAGTAATTGTAAGGTGA+AGG | 0.597455 | 3:-70256503 | None:intergenic |
| TTTGGAATGGAAGATTTCAA+GGG | 0.601290 | 3:-70256168 | None:intergenic |
| TGAAACGTTCGTTCCAAACG+GGG | 0.602900 | 3:-70256106 | None:intergenic |
| GAATGAAGTATGAAGAGCGT+AGG | 0.613867 | 3:+70256795 | MsG0380015442.01.T01:CDS |
| GAGGGGTTTAGGTGTATCAG+AGG | 0.614432 | 3:-70256192 | None:intergenic |
| AAGAAAGGCCGTGGATGCGG+CGG | 0.614958 | 3:-70256605 | None:intergenic |
| TGTGATATTGGTGGCGATGG+CGG | 0.620826 | 3:-70256359 | None:intergenic |
| GTTTCCTCTGTAATAAACAA+AGG | 0.622784 | 3:-70256456 | None:intergenic |
| GGAGGTGTTACCAGAATCGT+CGG | 0.624216 | 3:-70256084 | None:intergenic |
| GACGTAGGGTTTGAGATCGC+CGG | 0.627029 | 3:-70256021 | None:intergenic |
| GAAGACGGAGGGTGGCGACG+AGG | 0.628097 | 3:-70256211 | None:intergenic |
| GATAATAACAACTATTCCAG+TGG | 0.628118 | 3:+70256536 | MsG0380015442.01.T01:CDS |
| TCGACCCGAGGGTCGAACGA+CGG | 0.633031 | 3:-70256285 | None:intergenic |
| CGGATTTGGTGGCGAGACGA+CGG | 0.636038 | 3:-70256064 | None:intergenic |
| TAGTAATTGTAAGGTGAAGG+TGG | 0.637754 | 3:-70256500 | None:intergenic |
| AGGGGTTTAGGTGTATCAGA+GGG | 0.643433 | 3:-70256191 | None:intergenic |
| TTTCCCGGCTATTATCCTGG+TGG | 0.643598 | 3:+70256566 | MsG0380015442.01.T01:CDS |
| TGGAGTGATGAAGGTCAGGA+AGG | 0.646188 | 3:-70256244 | None:intergenic |
| GCGATGGCGGAGGAGGAGAG+CGG | 0.646928 | 3:-70256346 | None:intergenic |
| AATAACAACTATTCCAGTGG+CGG | 0.658986 | 3:+70256539 | MsG0380015442.01.T01:CDS |
| GGTGGTGGATAAGCACCACC+AGG | 0.660900 | 3:-70256581 | None:intergenic |
| TATGCTGCTGCTGGACCGAG+TGG | 0.662941 | 3:+70256644 | MsG0380015442.01.T01:CDS |
| GACCCGAGGGTCGAACGACG+GGG | 0.667769 | 3:-70256283 | None:intergenic |
| AACGAGGACGAATATTCAAG+CGG | 0.682229 | 3:-70256677 | None:intergenic |
| GTTTGGCGGAGATGATTGTG+AGG | 0.714272 | 3:-70255974 | None:intergenic |
| TTTGATCCGAGGCCAAAAGG+CGG | 0.724493 | 3:+70256698 | MsG0380015442.01.T01:CDS |
| ATCGAGCCAGAAGACGACGT+AGG | 0.726849 | 3:-70256036 | None:intergenic |
| GAAACGTTCGTTCCAAACGG+GGG | 0.735042 | 3:-70256105 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATCAAATATTTGTGATAT+TGG | - | Chr3:70256374-70256393 | None:intergenic | 15.0% |
| ! | TAATTGGTGTAGTAATTGTA+AGG | - | Chr3:70256512-70256531 | None:intergenic | 25.0% |
| ! | TCAAATATTTGTGATATTGG+TGG | - | Chr3:70256371-70256390 | None:intergenic | 25.0% |
| !! | GTTGTTATTATCAGAGTAAT+TGG | - | Chr3:70256528-70256547 | None:intergenic | 25.0% |
| AAGGAAGGATTTGAAGAATT+AGG | - | Chr3:70256440-70256459 | None:intergenic | 30.0% | |
| AGGAAGGATTTGAAGAATTA+GGG | - | Chr3:70256439-70256458 | None:intergenic | 30.0% | |
| GATAATAACAACTATTCCAG+TGG | + | Chr3:70256536-70256555 | MsG0380015442.01.T01:CDS | 30.0% | |
| GATTTGAAGAATTAGGGTTA+GGG | - | Chr3:70256433-70256452 | None:intergenic | 30.0% | |
| GTTTCCTCTGTAATAAACAA+AGG | - | Chr3:70256459-70256478 | None:intergenic | 30.0% | |
| ! | TTTGGAATGGAAGATTTCAA+GGG | - | Chr3:70256171-70256190 | None:intergenic | 30.0% |
| AAAAACGTCAACTGGAAAAC+CGG | + | Chr3:70256002-70256021 | MsG0380015442.01.T01:CDS | 35.0% | |
| AAGAATTAGGGTTAGGGTTA+GGG | - | Chr3:70256427-70256446 | None:intergenic | 35.0% | |
| AATAACAACTATTCCAGTGG+CGG | + | Chr3:70256539-70256558 | MsG0380015442.01.T01:CDS | 35.0% | |
| CCTCTGTAATAAACAAAGGA+AGG | - | Chr3:70256455-70256474 | None:intergenic | 35.0% | |
| GGATTTGAAGAATTAGGGTT+AGG | - | Chr3:70256434-70256453 | None:intergenic | 35.0% | |
| GTGTAGTAATTGTAAGGTGA+AGG | - | Chr3:70256506-70256525 | None:intergenic | 35.0% | |
| TAGTAATTGTAAGGTGAAGG+TGG | - | Chr3:70256503-70256522 | None:intergenic | 35.0% | |
| ! | CCTTCCTTTGTTTATTACAG+AGG | + | Chr3:70256452-70256471 | MsG0380015442.01.T01:CDS | 35.0% |
| ! | GTTTGGAATGGAAGATTTCA+AGG | - | Chr3:70256172-70256191 | None:intergenic | 35.0% |
| ! | TTTTCCAGTTGACGTTTTTG+AGG | - | Chr3:70256001-70256020 | None:intergenic | 35.0% |
| AACACCTCAAAAACGTCAAC+TGG | + | Chr3:70255994-70256013 | MsG0380015442.01.T01:CDS | 40.0% | |
| AACGAGGACGAATATTCAAG+CGG | - | Chr3:70256680-70256699 | None:intergenic | 40.0% | |
| AATGGAAGATTTCAAGGGTG+AGG | - | Chr3:70256166-70256185 | None:intergenic | 40.0% | |
| AGTGAAACGTTCGTTCCAAA+CGG | - | Chr3:70256111-70256130 | None:intergenic | 40.0% | |
| ATGGAAGATTTCAAGGGTGA+GGG | - | Chr3:70256165-70256184 | None:intergenic | 40.0% | |
| GAAGAATTAGGGTTAGGGTT+AGG | - | Chr3:70256428-70256447 | None:intergenic | 40.0% | |
| TAATTGTAAGGTGAAGGTGG+TGG | - | Chr3:70256500-70256519 | None:intergenic | 40.0% | |
| TAGGGTTAGGAAAAGGGTTA+GGG | - | Chr3:70256409-70256428 | None:intergenic | 40.0% | |
| TAGGGTTAGGGTTAGGAAAA+GGG | - | Chr3:70256415-70256434 | None:intergenic | 40.0% | |
| TTAGGGTTAGGAAAAGGGTT+AGG | - | Chr3:70256410-70256429 | None:intergenic | 40.0% | |
| TTAGGGTTAGGGTTAGGAAA+AGG | - | Chr3:70256416-70256435 | None:intergenic | 40.0% | |
| TTTAGGTGTATCAGAGGGTT+TGG | - | Chr3:70256189-70256208 | None:intergenic | 40.0% | |
| ! | CATCTCAAAATTAGCCTCCT+TGG | + | Chr3:70256323-70256342 | MsG0380015442.01.T01:CDS | 40.0% |
| ! | GAATGAAGTATGAAGAGCGT+AGG | + | Chr3:70256795-70256814 | MsG0380015442.01.T01:CDS | 40.0% |
| ! | TTGAGATGAATTTTCCCCTG+CGG | - | Chr3:70256311-70256330 | None:intergenic | 40.0% |
| !! | ATTTGTGATATTGGTGGCGA+TGG | - | Chr3:70256365-70256384 | None:intergenic | 40.0% |
| !! | TCGAGATCGATGGATTTTGA+CGG | - | Chr3:70255954-70255973 | None:intergenic | 40.0% |
| !!! | GTTGACGTTTTTGAGGTGTT+TGG | - | Chr3:70255994-70256013 | None:intergenic | 40.0% |
| AGGCCAAAAGGCGGTAAAAT+GGG | + | Chr3:70256707-70256726 | MsG0380015442.01.T01:CDS | 45.0% | |
| AGGGGTTTAGGTGTATCAGA+GGG | - | Chr3:70256194-70256213 | None:intergenic | 45.0% | |
| ATTGTGGAGTGATGAAGGTC+AGG | - | Chr3:70256251-70256270 | None:intergenic | 45.0% | |
| CTTCCAGTACGTTCGAAGAA+AGG | - | Chr3:70256623-70256642 | None:intergenic | 45.0% | |
| GCTTCTGCGAGAGATGATTA+TGG | + | Chr3:70256845-70256864 | MsG0380015442.01.T01:CDS | 45.0% | |
| GGGGAATTTCTTGACGATTG+TGG | - | Chr3:70256267-70256286 | None:intergenic | 45.0% | |
| GTGAAACGTTCGTTCCAAAC+GGG | - | Chr3:70256110-70256129 | None:intergenic | 45.0% | |
| GTGTATCAGAGGGTTTGGAA+TGG | - | Chr3:70256184-70256203 | None:intergenic | 45.0% | |
| GTTACCAGAATCGTCGGATT+TGG | - | Chr3:70256081-70256100 | None:intergenic | 45.0% | |
| TACTTTCCCGGCTATTATCC+TGG | + | Chr3:70256563-70256582 | MsG0380015442.01.T01:CDS | 45.0% | |
| TGAAACGTTCGTTCCAAACG+GGG | - | Chr3:70256109-70256128 | None:intergenic | 45.0% | |
| TGACGATTGTGGAGTGATGA+AGG | - | Chr3:70256256-70256275 | None:intergenic | 45.0% | |
| TTAGGGTTAGGGTTAGGGTT+AGG | - | Chr3:70256422-70256441 | None:intergenic | 45.0% | |
| ! | AAAGGCGGTAAAATGGGCTT+AGG | + | Chr3:70256713-70256732 | MsG0380015442.01.T01:CDS | 45.0% |
| ! | AAGCCCATTTTACCGCCTTT+TGG | - | Chr3:70256713-70256732 | None:intergenic | 45.0% |
| ! | AGGTCAGGAAGGTCTTTTAG+CGG | - | Chr3:70256236-70256255 | None:intergenic | 45.0% |
| ! | ATTTTACCGCCTTTTGGCCT+CGG | - | Chr3:70256707-70256726 | None:intergenic | 45.0% |
| ! | GAAGGTCTTTTAGCGGAAGA+CGG | - | Chr3:70256229-70256248 | None:intergenic | 45.0% |
| ! | GTAAAATGGGCTTAGGAGCT+GGG | + | Chr3:70256720-70256739 | MsG0380015442.01.T01:CDS | 45.0% |
| !! | AGATCGATGGATTTTGACGG+TGG | - | Chr3:70255951-70255970 | None:intergenic | 45.0% |
| !!! | GACGTTTTTGAGGTGTTTGG+CGG | - | Chr3:70255991-70256010 | None:intergenic | 45.0% |
| ACCAGAATCGTCGGATTTGG+TGG | - | Chr3:70256078-70256097 | None:intergenic | 50.0% | |
| ACTGGAAGTTATGCTGCTGC+TGG | + | Chr3:70256635-70256654 | MsG0380015442.01.T01:CDS | 50.0% | |
| AGCACCACCAGGATAATAGC+CGG | - | Chr3:70256573-70256592 | None:intergenic | 50.0% | |
| ATTCGTCCTCGTTTGATCCG+AGG | + | Chr3:70256687-70256706 | MsG0380015442.01.T01:CDS | 50.0% | |
| GAAACGTTCGTTCCAAACGG+GGG | - | Chr3:70256108-70256127 | None:intergenic | 50.0% | |
| GAAGATTTCAAGGGTGAGGG+TGG | - | Chr3:70256162-70256181 | None:intergenic | 50.0% | |
| GAATATTCAAGCGGCGCAGA+CGG | - | Chr3:70256671-70256690 | None:intergenic | 50.0% | |
| GAGGCCAAAAGGCGGTAAAA+TGG | + | Chr3:70256706-70256725 | MsG0380015442.01.T01:CDS | 50.0% | |
| GAGGGGTTTAGGTGTATCAG+AGG | - | Chr3:70256195-70256214 | None:intergenic | 50.0% | |
| GATTGTGAGGTCGAGATCGA+TGG | - | Chr3:70255964-70255983 | None:intergenic | 50.0% | |
| GTTTGGCGGAGATGATTGTG+AGG | - | Chr3:70255977-70255996 | None:intergenic | 50.0% | |
| TCAAACCCTACGTCGTCTTC+TGG | + | Chr3:70256030-70256049 | MsG0380015442.01.T01:CDS | 50.0% | |
| TCGTTTGATCCGAGGCCAAA+AGG | + | Chr3:70256695-70256714 | MsG0380015442.01.T01:CDS | 50.0% | |
| TGAGGGTGGAATCTGGAAGA+GGG | - | Chr3:70256148-70256167 | None:intergenic | 50.0% | |
| TGGAGTGATGAAGGTCAGGA+AGG | - | Chr3:70256247-70256266 | None:intergenic | 50.0% | |
| TTTCCCGGCTATTATCCTGG+TGG | + | Chr3:70256566-70256585 | MsG0380015442.01.T01:CDS | 50.0% | |
| TTTGATCCGAGGCCAAAAGG+CGG | + | Chr3:70256698-70256717 | MsG0380015442.01.T01:CDS | 50.0% | |
| ! | GGTAAAATGGGCTTAGGAGC+TGG | + | Chr3:70256719-70256738 | MsG0380015442.01.T01:CDS | 50.0% |
| ! | GTCTTTTAGCGGAAGACGGA+GGG | - | Chr3:70256225-70256244 | None:intergenic | 50.0% |
| ! | TTTTGGCCTCGGATCAAACG+AGG | - | Chr3:70256696-70256715 | None:intergenic | 50.0% |
| !! | GGAGGTGTTACCAGAATCGT+CGG | - | Chr3:70256087-70256106 | None:intergenic | 50.0% |
| !! | TAAGGTGAAGGTGGTGGAGA+AGG | - | Chr3:70256494-70256513 | None:intergenic | 50.0% |
| !! | TCGATGGATTTTGACGGTGG+AGG | - | Chr3:70255948-70255967 | None:intergenic | 50.0% |
| !! | TGTGATATTGGTGGCGATGG+CGG | - | Chr3:70256362-70256381 | None:intergenic | 50.0% |
| ATCGAGCCAGAAGACGACGT+AGG | - | Chr3:70256039-70256058 | None:intergenic | 55.0% | |
| CGGCCTTTCTTCGAACGTAC+TGG | + | Chr3:70256617-70256636 | MsG0380015442.01.T01:CDS | 55.0% | |
| CTGGAAGAGGGAGAGAGAGA+GGG | - | Chr3:70256136-70256155 | None:intergenic | 55.0% | |
| GCACCACCAGGATAATAGCC+GGG | - | Chr3:70256572-70256591 | None:intergenic | 55.0% | |
| GCCACCAAATCCGACGATTC+TGG | + | Chr3:70256074-70256093 | MsG0380015442.01.T01:CDS | 55.0% | |
| GTACGTTCGAAGAAAGGCCG+TGG | - | Chr3:70256617-70256636 | None:intergenic | 55.0% | |
| GTGAGGGTGGAATCTGGAAG+AGG | - | Chr3:70256149-70256168 | None:intergenic | 55.0% | |
| TCAAGGGTGAGGGTGGAATC+TGG | - | Chr3:70256155-70256174 | None:intergenic | 55.0% | |
| TCGAAGAAAGGCCGTGGATG+CGG | - | Chr3:70256611-70256630 | None:intergenic | 55.0% | |
| TCGAGCCAGAAGACGACGTA+GGG | - | Chr3:70256038-70256057 | None:intergenic | 55.0% | |
| TCTGGAAGAGGGAGAGAGAG+AGG | - | Chr3:70256137-70256156 | None:intergenic | 55.0% | |
| ! | GACGTAGGGTTTGAGATCGC+CGG | - | Chr3:70256024-70256043 | None:intergenic | 55.0% |
| ! | GGTCTTTTAGCGGAAGACGG+AGG | - | Chr3:70256226-70256245 | None:intergenic | 55.0% |
| ! | GTATGAAGAGCGTAGGCTCG+CGG | + | Chr3:70256802-70256821 | MsG0380015442.01.T01:CDS | 55.0% |
| ! | TCCAGTGGCGGTTACTTTCC+CGG | + | Chr3:70256551-70256570 | MsG0380015442.01.T01:CDS | 55.0% |
| ! | TTTTAGCGGAAGACGGAGGG+TGG | - | Chr3:70256222-70256241 | None:intergenic | 55.0% |
| !! | GGTGGACTTGCTCTGGAAGA+AGG | + | Chr3:70256773-70256792 | MsG0380015442.01.T01:CDS | 55.0% |
| AAGAAAGGCCGTGGATGCGG+CGG | - | Chr3:70256608-70256627 | None:intergenic | 60.0% | |
| ACGTTCGTTCCAAACGGGGG+AGG | - | Chr3:70256105-70256124 | None:intergenic | 60.0% | |
| AGAGCGTAGGCTCGCGGATA+TGG | + | Chr3:70256808-70256827 | MsG0380015442.01.T01:CDS | 60.0% | |
| ATTCCCCGTCGTTCGACCCT+CGG | + | Chr3:70256280-70256299 | MsG0380015442.01.T01:CDS | 60.0% | |
| CTGGTAACACCTCCCCCGTT+TGG | + | Chr3:70256093-70256112 | MsG0380015442.01.T01:CDS | 60.0% | |
| TATGCTGCTGCTGGACCGAG+TGG | + | Chr3:70256644-70256663 | MsG0380015442.01.T01:CDS | 60.0% | |
| ! | AATGGGCTTAGGAGCTGGGC+TGG | + | Chr3:70256724-70256743 | MsG0380015442.01.T01:CDS | 60.0% |
| !! | CGGATTTGGTGGCGAGACGA+CGG | - | Chr3:70256067-70256086 | None:intergenic | 60.0% |
| !! | GATATTGGTGGCGATGGCGG+AGG | - | Chr3:70256359-70256378 | None:intergenic | 60.0% |
| !! | GGTGGTGGATAAGCACCACC+AGG | - | Chr3:70256584-70256603 | None:intergenic | 60.0% |
| !! | TGGCTGTTGGTGCTGCTGCT+GGG | + | Chr3:70256744-70256763 | MsG0380015442.01.T01:CDS | 60.0% |
| !! | TTAGGAGCTGGGCTGGCTGT+TGG | + | Chr3:70256731-70256750 | MsG0380015442.01.T01:CDS | 60.0% |
| AAGACGGAGGGTGGCGACGA+GGG | - | Chr3:70256213-70256232 | None:intergenic | 65.0% | |
| AGGGTGGCGACGAGGGGTTT+AGG | - | Chr3:70256206-70256225 | None:intergenic | 65.0% | |
| GCCGGGAAAGTAACCGCCAC+TGG | - | Chr3:70256555-70256574 | None:intergenic | 65.0% | |
| TCGACCCGAGGGTCGAACGA+CGG | - | Chr3:70256288-70256307 | None:intergenic | 65.0% | |
| TTCCCCGTCGTTCGACCCTC+GGG | + | Chr3:70256281-70256300 | MsG0380015442.01.T01:CDS | 65.0% | |
| !! | ATTGGTGGCGATGGCGGAGG+AGG | - | Chr3:70256356-70256375 | None:intergenic | 65.0% |
| !! | CTGGCTGTTGGTGCTGCTGC+TGG | + | Chr3:70256743-70256762 | MsG0380015442.01.T01:CDS | 65.0% |
| !! | GGCTGTTGGTGCTGCTGCTG+GGG | + | Chr3:70256745-70256764 | MsG0380015442.01.T01:CDS | 65.0% |
| !! | TTGGTGGCGAGACGACGGTC+AGG | - | Chr3:70256062-70256081 | None:intergenic | 65.0% |
| AAAGGCCGTGGATGCGGCGG+TGG | - | Chr3:70256605-70256624 | None:intergenic | 70.0% | |
| AGACGGAGGGTGGCGACGAG+GGG | - | Chr3:70256212-70256231 | None:intergenic | 70.0% | |
| AGCGGCGCAGACGGTCCACT+CGG | - | Chr3:70256662-70256681 | None:intergenic | 70.0% | |
| CACCACCACCGCCGCATCCA+CGG | + | Chr3:70256597-70256616 | MsG0380015442.01.T01:CDS | 70.0% | |
| CGACCCGAGGGTCGAACGAC+GGG | - | Chr3:70256287-70256306 | None:intergenic | 70.0% | |
| GAAGACGGAGGGTGGCGACG+AGG | - | Chr3:70256214-70256233 | None:intergenic | 70.0% | |
| GACCCGAGGGTCGAACGACG+GGG | - | Chr3:70256286-70256305 | None:intergenic | 70.0% | |
| GAGGAGGAGAGCGGCCAAGG+AGG | - | Chr3:70256340-70256359 | None:intergenic | 70.0% | |
| TTCCCCTGCGGTCGACCCGA+GGG | - | Chr3:70256299-70256318 | None:intergenic | 70.0% | |
| TTTCCCCTGCGGTCGACCCG+AGG | - | Chr3:70256300-70256319 | None:intergenic | 70.0% | |
| ! | GGCGCTGGGTGGACTTGCTC+TGG | + | Chr3:70256766-70256785 | MsG0380015442.01.T01:CDS | 70.0% |
| !! | GCGATGGCGGAGGAGGAGAG+CGG | - | Chr3:70256349-70256368 | None:intergenic | 70.0% |
| CGACCCTCGGGTCGACCGCA+GGG | + | Chr3:70256293-70256312 | MsG0380015442.01.T01:CDS | 75.0% | |
| GACCCTCGGGTCGACCGCAG+GGG | + | Chr3:70256294-70256313 | MsG0380015442.01.T01:CDS | 75.0% | |
| GCGGAGGAGGAGAGCGGCCA+AGG | - | Chr3:70256343-70256362 | None:intergenic | 75.0% | |
| TCGACCCTCGGGTCGACCGC+AGG | + | Chr3:70256292-70256311 | MsG0380015442.01.T01:CDS | 75.0% | |
| ! | CGTGGATGCGGCGGTGGTGG+TGG | - | Chr3:70256599-70256618 | None:intergenic | 75.0% |
| !! | GGTGCTGCTGCTGGGGCGCT+GGG | + | Chr3:70256752-70256771 | MsG0380015442.01.T01:CDS | 75.0% |
| !! | TGGTGCTGCTGCTGGGGCGC+TGG | + | Chr3:70256751-70256770 | MsG0380015442.01.T01:CDS | 75.0% |
| ! | GGCCGTGGATGCGGCGGTGG+TGG | - | Chr3:70256602-70256621 | None:intergenic | 80.0% |
| !!! | GCTGCTGCTGGGGCGCTGGG+TGG | + | Chr3:70256755-70256774 | MsG0380015442.01.T01:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 70255930 | 70256892 | 70255930 | ID=MsG0380015442.01;Name=MsG0380015442.01 |
| Chr3 | mRNA | 70255930 | 70256892 | 70255930 | ID=MsG0380015442.01.T01;Parent=MsG0380015442.01;Name=MsG0380015442.01.T01;_AED=0.41;_eAED=0.41;_QI=0|-1|1|1|-1|1|1|0|320 |
| Chr3 | exon | 70255930 | 70256892 | 70255930 | ID=MsG0380015442.01.T01:exon:357;Parent=MsG0380015442.01.T01 |
| Chr3 | CDS | 70255930 | 70256892 | 70255930 | ID=MsG0380015442.01.T01:cds;Parent=MsG0380015442.01.T01 |
| Gene Sequence |
| Protein sequence |
