Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380015591.01.T01 | KEH34851.1 | 85.507 | 276 | 4 | 2 | 1 | 240 | 1 | 276 | 3.46E-161 | 470 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380015591.01.T01 | Q8L751 | 75 | 196 | 45 | 2 | 49 | 240 | 115 | 310 | 1.48E-95 | 300 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380015591.01.T01 | A0A072UZM6 | 85.507 | 276 | 4 | 2 | 1 | 240 | 1 | 276 | 1.65e-161 | 470 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0180006161.01 | MsG0380015591.01 | 0.848116 | 7.524056e-60 | 1.366242e-56 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380015591.01.T01 | MTR_3g073040 | 85.507 | 276 | 4 | 2 | 1 | 240 | 1 | 276 | 4.19e-165 | 470 |
MsG0380015591.01.T01 | MTR_3g073040 | 85.507 | 276 | 4 | 2 | 1 | 240 | 1 | 276 | 5.02e-163 | 470 |
MsG0380015591.01.T01 | MTR_3g073040 | 85.507 | 276 | 4 | 2 | 1 | 240 | 1 | 276 | 5.99e-163 | 470 |
MsG0380015591.01.T01 | MTR_5g459350 | 78.125 | 192 | 42 | 0 | 49 | 240 | 61 | 252 | 3.09e-90 | 282 |
MsG0380015591.01.T01 | MTR_3g097270 | 57.732 | 194 | 78 | 4 | 49 | 240 | 82 | 273 | 7.12e-68 | 223 |
MsG0380015591.01.T01 | MTR_3g086340 | 51.741 | 201 | 88 | 1 | 49 | 240 | 101 | 301 | 1.42e-64 | 213 |
MsG0380015591.01.T01 | MTR_3g086340 | 51.741 | 201 | 88 | 1 | 49 | 240 | 101 | 301 | 2.34e-63 | 211 |
MsG0380015591.01.T01 | MTR_4g101410 | 36.293 | 259 | 144 | 5 | 1 | 240 | 6 | 262 | 1.46e-44 | 159 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380015591.01.T01 | AT4G08180 | 75.000 | 196 | 45 | 2 | 49 | 240 | 115 | 310 | 1.51e-96 | 300 |
MsG0380015591.01.T01 | AT4G08180 | 75.000 | 196 | 45 | 2 | 49 | 240 | 115 | 310 | 1.51e-96 | 300 |
MsG0380015591.01.T01 | AT4G08180 | 75.000 | 196 | 45 | 2 | 49 | 240 | 115 | 310 | 1.58e-96 | 300 |
MsG0380015591.01.T01 | AT4G08180 | 75.000 | 196 | 45 | 2 | 49 | 240 | 115 | 310 | 1.59e-96 | 300 |
MsG0380015591.01.T01 | AT2G31020 | 72.081 | 197 | 50 | 1 | 49 | 240 | 100 | 296 | 1.00e-86 | 273 |
MsG0380015591.01.T01 | AT1G77730 | 54.737 | 190 | 86 | 0 | 49 | 238 | 63 | 252 | 3.12e-69 | 214 |
MsG0380015591.01.T01 | AT1G13170 | 55.224 | 201 | 80 | 3 | 49 | 240 | 104 | 303 | 1.27e-67 | 223 |
MsG0380015591.01.T01 | AT1G13170 | 55.224 | 201 | 80 | 3 | 49 | 240 | 104 | 303 | 2.03e-67 | 223 |
MsG0380015591.01.T01 | AT4G22540 | 37.200 | 250 | 146 | 6 | 1 | 240 | 6 | 254 | 1.74e-46 | 164 |
MsG0380015591.01.T01 | AT4G22540 | 37.200 | 250 | 146 | 6 | 1 | 240 | 6 | 254 | 1.74e-46 | 164 |
MsG0380015591.01.T01 | AT4G12460 | 40.609 | 197 | 110 | 4 | 49 | 240 | 37 | 231 | 9.72e-43 | 153 |
MsG0380015591.01.T01 | AT4G12460 | 40.609 | 197 | 110 | 4 | 49 | 240 | 37 | 231 | 3.46e-42 | 152 |
MsG0380015591.01.T01 | AT4G12460 | 40.609 | 197 | 110 | 4 | 49 | 240 | 37 | 231 | 3.46e-42 | 152 |
MsG0380015591.01.T01 | AT4G12460 | 40.404 | 198 | 110 | 5 | 49 | 240 | 37 | 232 | 5.59e-41 | 148 |
MsG0380015591.01.T01 | AT4G12460 | 40.404 | 198 | 110 | 5 | 49 | 240 | 37 | 232 | 1.59e-40 | 147 |
Find 51 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATTTCCAATAGTGAATTAA+TGG | 0.249195 | 3:+72262164 | MsG0380015591.01.T01:CDS |
AATTCACTATTGGAAATTCT+AGG | 0.249524 | 3:-72262159 | None:intergenic |
GAAACTAAGAAATCGGCTTC+TGG | 0.327367 | 3:+72262218 | MsG0380015591.01.T01:CDS |
CTCTCTTACTACAAGATTCA+TGG | 0.337848 | 3:+72261752 | MsG0380015591.01.T01:CDS |
TGACACGTTACGCCATTTAG+AGG | 0.339329 | 3:+72262353 | MsG0380015591.01.T01:CDS |
AATGATGTAGTACCTCTAAA+TGG | 0.341796 | 3:-72262365 | None:intergenic |
AGTGAGTGAAGCGGCTATTC+AGG | 0.343205 | 3:+72262248 | MsG0380015591.01.T01:CDS |
GTTAATCATGAAACTGAAAA+AGG | 0.347607 | 3:+72261791 | MsG0380015591.01.T01:CDS |
AGGAGCCATTAATTCACTAT+TGG | 0.357424 | 3:-72262169 | None:intergenic |
CGATGGTTTGTTCTTCAAGA+TGG | 0.400251 | 3:+72261725 | MsG0380015591.01.T01:CDS |
CAACTGAGAAACTAAGAAAT+CGG | 0.411924 | 3:+72262211 | MsG0380015591.01.T01:CDS |
AGATTCATCGCCGATAACTT+TGG | 0.428593 | 3:-72261816 | None:intergenic |
ATGAATCGGAGCTGCCGAAT+CGG | 0.438007 | 3:-72261568 | None:intergenic |
CAACATCGTCGAAAACCTTT+CGG | 0.456810 | 3:+72261878 | MsG0380015591.01.T01:CDS |
ATTCACTATTGGAAATTCTA+GGG | 0.475049 | 3:-72262158 | None:intergenic |
GCGACGGATGGTGGTGGAGG+AGG | 0.478863 | 3:-72261537 | None:intergenic |
TATTTCCGACCAAGCTTCAC+CGG | 0.500895 | 3:+72261479 | MsG0380015591.01.T01:CDS |
CTCGCTGACTACCGTTGCTA+TGG | 0.503839 | 3:-72261599 | None:intergenic |
GAGGTTTCACCGGTGAAGCT+TGG | 0.510958 | 3:-72261488 | None:intergenic |
GAAATTGTTACGTTATCCAC+AGG | 0.511919 | 3:-72262189 | None:intergenic |
CGTCGCTGTTAGATCCGATT+CGG | 0.518275 | 3:+72261554 | MsG0380015591.01.T01:CDS |
GGATGGTGGTGGAGGAGGCA+TGG | 0.525114 | 3:-72261532 | None:intergenic |
CTATGGCTGTGACTATGAAT+CGG | 0.529061 | 3:-72261582 | None:intergenic |
TGAGGATCGTGTGGCGTGGA+TGG | 0.535282 | 3:+72262107 | MsG0380015591.01.T01:CDS |
AGAAATCGGCTTCTGGATGA+AGG | 0.540164 | 3:+72262225 | MsG0380015591.01.T01:CDS |
ACAGCGACGGATGGTGGTGG+AGG | 0.544436 | 3:-72261540 | None:intergenic |
TTGATTAACGAACCTTGAGA+TGG | 0.547636 | 3:-72261907 | None:intergenic |
AACGGAGACGGAGGTTTCAC+CGG | 0.553058 | 3:-72261498 | None:intergenic |
TTTCACCGGTGAAGCTTGGT+CGG | 0.567810 | 3:-72261484 | None:intergenic |
TAGTGAATTAATGGCTCCTG+TGG | 0.568682 | 3:+72262173 | MsG0380015591.01.T01:CDS |
GCGTAACGTGTCAATGAGGA+TGG | 0.571861 | 3:-72262343 | None:intergenic |
TTTCGGTGAAATCCATCTCA+AGG | 0.575656 | 3:+72261895 | MsG0380015591.01.T01:CDS |
CTAACAGCGACGGATGGTGG+TGG | 0.587509 | 3:-72261543 | None:intergenic |
GTGAAGTCAGTGAACGGAGA+CGG | 0.594981 | 3:-72261510 | None:intergenic |
GATCTAACAGCGACGGATGG+TGG | 0.598948 | 3:-72261546 | None:intergenic |
TGAAGCTTGGTCGGAAATAG+CGG | 0.604247 | 3:-72261475 | None:intergenic |
TCGGATCTAACAGCGACGGA+TGG | 0.614767 | 3:-72261549 | None:intergenic |
ATAGCGGAGACGCAGCAGAA+AGG | 0.622468 | 3:-72261459 | None:intergenic |
GGCATGGTGAAGTCAGTGAA+CGG | 0.632703 | 3:-72261516 | None:intergenic |
CACGTGAGGATCGTGTGGCG+TGG | 0.635301 | 3:+72262103 | MsG0380015591.01.T01:CDS |
TTGAGATGGATTTCACCGAA+AGG | 0.638900 | 3:-72261893 | None:intergenic |
TCGGCGATGAATCTATTCGA+AGG | 0.646280 | 3:+72261825 | MsG0380015591.01.T01:CDS |
GTAAAGGATGGAGACCTCGA+TGG | 0.652126 | 3:+72261708 | MsG0380015591.01.T01:intron |
AGAGTCACGTGAGGATCGTG+TGG | 0.664779 | 3:+72262098 | MsG0380015591.01.T01:CDS |
CATAGTCACAGCCATAGCAA+CGG | 0.676128 | 3:+72261588 | MsG0380015591.01.T01:CDS |
AATGGCGTAACGTGTCAATG+AGG | 0.676170 | 3:-72262347 | None:intergenic |
CGAATCGGATCTAACAGCGA+CGG | 0.686757 | 3:-72261553 | None:intergenic |
AAGTCAGTGAACGGAGACGG+AGG | 0.689651 | 3:-72261507 | None:intergenic |
TTTGAGAGCAGAGTCACGTG+AGG | 0.696014 | 3:+72262089 | MsG0380015591.01.T01:CDS |
GGATGAAGGAGTGAGTGAAG+CGG | 0.698470 | 3:+72262239 | MsG0380015591.01.T01:CDS |
TCTTGAAGAACAAACCATCG+AGG | 0.774029 | 3:-72261722 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTTCCAATAGTGAATTAA+TGG | + | Chr3:72262164-72262183 | MsG0380015591.01.T01:CDS | 20.0% |
!! | ATATTGATAAACTGTGATTT+AGG | + | Chr3:72261996-72262015 | MsG0380015591.01.T01:intron | 20.0% |
! | AATTCACTATTGGAAATTCT+AGG | - | Chr3:72262162-72262181 | None:intergenic | 25.0% |
! | ATTCACTATTGGAAATTCTA+GGG | - | Chr3:72262161-72262180 | None:intergenic | 25.0% |
! | GTTAATCATGAAACTGAAAA+AGG | + | Chr3:72261791-72261810 | MsG0380015591.01.T01:CDS | 25.0% |
!! | ATCAGATGATAAGAGATTTT+CGG | + | Chr3:72262041-72262060 | MsG0380015591.01.T01:CDS | 25.0% |
!! | TGATTAACGATGATTTTATC+AGG | - | Chr3:72261779-72261798 | None:intergenic | 25.0% |
!!! | TTCAAACATAGTTGATGAAT+TGG | - | Chr3:72261938-72261957 | None:intergenic | 25.0% |
AATGATGTAGTACCTCTAAA+TGG | - | Chr3:72262368-72262387 | None:intergenic | 30.0% | |
CAACTGAGAAACTAAGAAAT+CGG | + | Chr3:72262211-72262230 | MsG0380015591.01.T01:CDS | 30.0% | |
CTGTATAAATGGGTGAATTA+CGG | + | Chr3:72261686-72261705 | MsG0380015591.01.T01:intron | 30.0% | |
AAATGGGTGAATTACGGTAA+AGG | + | Chr3:72261692-72261711 | MsG0380015591.01.T01:intron | 35.0% | |
AGGAGCCATTAATTCACTAT+TGG | - | Chr3:72262172-72262191 | None:intergenic | 35.0% | |
ATCTCGGGATACTGTATAAA+TGG | + | Chr3:72261675-72261694 | MsG0380015591.01.T01:intron | 35.0% | |
CTCTCTTACTACAAGATTCA+TGG | + | Chr3:72261752-72261771 | MsG0380015591.01.T01:CDS | 35.0% | |
GAAAAAGGCTCCAAAGTTAT+CGG | + | Chr3:72261806-72261825 | MsG0380015591.01.T01:CDS | 35.0% | |
GAAATTGTTACGTTATCCAC+AGG | - | Chr3:72262192-72262211 | None:intergenic | 35.0% | |
TCTCGGGATACTGTATAAAT+GGG | + | Chr3:72261676-72261695 | MsG0380015591.01.T01:intron | 35.0% | |
TTGATTAACGAACCTTGAGA+TGG | - | Chr3:72261910-72261929 | None:intergenic | 35.0% | |
!!! | TAAGAGATTTTCGGTGTTCA+CGG | + | Chr3:72262050-72262069 | MsG0380015591.01.T01:CDS | 35.0% |
AGATTCATCGCCGATAACTT+TGG | - | Chr3:72261819-72261838 | None:intergenic | 40.0% | |
CAACATCGTCGAAAACCTTT+CGG | + | Chr3:72261878-72261897 | MsG0380015591.01.T01:CDS | 40.0% | |
CTATGGCTGTGACTATGAAT+CGG | - | Chr3:72261585-72261604 | None:intergenic | 40.0% | |
TAGTGAATTAATGGCTCCTG+TGG | + | Chr3:72262173-72262192 | MsG0380015591.01.T01:CDS | 40.0% | |
TCTTGAAGAACAAACCATCG+AGG | - | Chr3:72261725-72261744 | None:intergenic | 40.0% | |
TTTCGGTGAAATCCATCTCA+AGG | + | Chr3:72261895-72261914 | MsG0380015591.01.T01:CDS | 40.0% | |
! | AGGTTTTCGACGATGTTGAT+AGG | - | Chr3:72261876-72261895 | None:intergenic | 40.0% |
! | GAAACTAAGAAATCGGCTTC+TGG | + | Chr3:72262218-72262237 | MsG0380015591.01.T01:CDS | 40.0% |
! | GGTTTTCGACGATGTTGATA+GGG | - | Chr3:72261875-72261894 | None:intergenic | 40.0% |
! | TTGAGATGGATTTCACCGAA+AGG | - | Chr3:72261896-72261915 | None:intergenic | 40.0% |
!! | CGATGGTTTGTTCTTCAAGA+TGG | + | Chr3:72261725-72261744 | MsG0380015591.01.T01:CDS | 40.0% |
!!! | AAGAGATTTTCGGTGTTCAC+GGG | + | Chr3:72262051-72262070 | MsG0380015591.01.T01:CDS | 40.0% |
AATGGCGTAACGTGTCAATG+AGG | - | Chr3:72262350-72262369 | None:intergenic | 45.0% | |
CATAGTCACAGCCATAGCAA+CGG | + | Chr3:72261588-72261607 | MsG0380015591.01.T01:CDS | 45.0% | |
GGGTGAATTACGGTAAAGGA+TGG | + | Chr3:72261696-72261715 | MsG0380015591.01.T01:intron | 45.0% | |
TATTTCCGACCAAGCTTCAC+CGG | + | Chr3:72261479-72261498 | MsG0380015591.01.T01:CDS | 45.0% | |
TCGGCGATGAATCTATTCGA+AGG | + | Chr3:72261825-72261844 | MsG0380015591.01.T01:CDS | 45.0% | |
TGAAGCTTGGTCGGAAATAG+CGG | - | Chr3:72261478-72261497 | None:intergenic | 45.0% | |
TGACACGTTACGCCATTTAG+AGG | + | Chr3:72262353-72262372 | MsG0380015591.01.T01:CDS | 45.0% | |
TTCAAATCAACAACCACCGC+CGG | - | Chr3:72261630-72261649 | None:intergenic | 45.0% | |
TTGAAGATCAACGACCTCGT+CGG | + | Chr3:72261645-72261664 | MsG0380015591.01.T01:intron | 45.0% | |
! | AGAAATCGGCTTCTGGATGA+AGG | + | Chr3:72262225-72262244 | MsG0380015591.01.T01:CDS | 45.0% |
AGTGAGTGAAGCGGCTATTC+AGG | + | Chr3:72262248-72262267 | MsG0380015591.01.T01:CDS | 50.0% | |
ATCAACGACCTCGTCGGAAA+TGG | + | Chr3:72261651-72261670 | MsG0380015591.01.T01:intron | 50.0% | |
ATGAATCGGAGCTGCCGAAT+CGG | - | Chr3:72261571-72261590 | None:intergenic | 50.0% | |
CCTCGTCGGAAATGGAATCT+CGG | + | Chr3:72261659-72261678 | MsG0380015591.01.T01:intron | 50.0% | |
CGAATCGGATCTAACAGCGA+CGG | - | Chr3:72261556-72261575 | None:intergenic | 50.0% | |
CGTCGCTGTTAGATCCGATT+CGG | + | Chr3:72261554-72261573 | MsG0380015591.01.T01:CDS | 50.0% | |
CTCGTCGGAAATGGAATCTC+GGG | + | Chr3:72261660-72261679 | MsG0380015591.01.T01:intron | 50.0% | |
GCGTAACGTGTCAATGAGGA+TGG | - | Chr3:72262346-72262365 | None:intergenic | 50.0% | |
GGATGAAGGAGTGAGTGAAG+CGG | + | Chr3:72262239-72262258 | MsG0380015591.01.T01:CDS | 50.0% | |
GGCATGGTGAAGTCAGTGAA+CGG | - | Chr3:72261519-72261538 | None:intergenic | 50.0% | |
GTAAAGGATGGAGACCTCGA+TGG | + | Chr3:72261708-72261727 | MsG0380015591.01.T01:intron | 50.0% | |
GTGAAGTCAGTGAACGGAGA+CGG | - | Chr3:72261513-72261532 | None:intergenic | 50.0% | |
TTTCACCGGTGAAGCTTGGT+CGG | - | Chr3:72261487-72261506 | None:intergenic | 50.0% | |
TTTGAGAGCAGAGTCACGTG+AGG | + | Chr3:72262089-72262108 | MsG0380015591.01.T01:CDS | 50.0% | |
AACGGAGACGGAGGTTTCAC+CGG | - | Chr3:72261501-72261520 | None:intergenic | 55.0% | |
AAGTCAGTGAACGGAGACGG+AGG | - | Chr3:72261510-72261529 | None:intergenic | 55.0% | |
AGAGTCACGTGAGGATCGTG+TGG | + | Chr3:72262098-72262117 | MsG0380015591.01.T01:CDS | 55.0% | |
CCGAGATTCCATTTCCGACG+AGG | - | Chr3:72261662-72261681 | None:intergenic | 55.0% | |
GAGGTTTCACCGGTGAAGCT+TGG | - | Chr3:72261491-72261510 | None:intergenic | 55.0% | |
GATCTAACAGCGACGGATGG+TGG | - | Chr3:72261549-72261568 | None:intergenic | 55.0% | |
TCGGATCTAACAGCGACGGA+TGG | - | Chr3:72261552-72261571 | None:intergenic | 55.0% | |
! | ATAGCGGAGACGCAGCAGAA+AGG | - | Chr3:72261462-72261481 | None:intergenic | 55.0% |
! | CTCGCTGACTACCGTTGCTA+TGG | - | Chr3:72261602-72261621 | None:intergenic | 55.0% |
CGGTAGTCAGCGAGAACAGC+CGG | + | Chr3:72261608-72261627 | MsG0380015591.01.T01:intron | 60.0% | |
TAGTCAGCGAGAACAGCCGG+CGG | + | Chr3:72261611-72261630 | MsG0380015591.01.T01:intron | 60.0% | |
TGAGGATCGTGTGGCGTGGA+TGG | + | Chr3:72262107-72262126 | MsG0380015591.01.T01:CDS | 60.0% | |
! | CTAACAGCGACGGATGGTGG+TGG | - | Chr3:72261546-72261565 | None:intergenic | 60.0% |
CACGTGAGGATCGTGTGGCG+TGG | + | Chr3:72262103-72262122 | MsG0380015591.01.T01:CDS | 65.0% | |
!! | ACAGCGACGGATGGTGGTGG+AGG | - | Chr3:72261543-72261562 | None:intergenic | 65.0% |
!! | GGATGGTGGTGGAGGAGGCA+TGG | - | Chr3:72261535-72261554 | None:intergenic | 65.0% |
TCAGCGAGAACAGCCGGCGG+TGG | + | Chr3:72261614-72261633 | MsG0380015591.01.T01:intron | 70.0% | |
!! | GCGACGGATGGTGGTGGAGG+AGG | - | Chr3:72261540-72261559 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr3 | gene | 72261453 | 72262392 | 72261453 | ID=MsG0380015591.01;Name=MsG0380015591.01 |
Chr3 | mRNA | 72261453 | 72262392 | 72261453 | ID=MsG0380015591.01.T01;Parent=MsG0380015591.01;Name=MsG0380015591.01.T01;_AED=0.46;_eAED=0.47;_QI=0|0.5|0|1|1|1|3|0|244 |
Chr3 | exon | 72261453 | 72261609 | 72261453 | ID=MsG0380015591.01.T01:exon:632;Parent=MsG0380015591.01.T01 |
Chr3 | exon | 72261714 | 72261916 | 72261714 | ID=MsG0380015591.01.T01:exon:633;Parent=MsG0380015591.01.T01 |
Chr3 | exon | 72262018 | 72262392 | 72262018 | ID=MsG0380015591.01.T01:exon:634;Parent=MsG0380015591.01.T01 |
Chr3 | CDS | 72261453 | 72261609 | 72261453 | ID=MsG0380015591.01.T01:cds;Parent=MsG0380015591.01.T01 |
Chr3 | CDS | 72261714 | 72261916 | 72261714 | ID=MsG0380015591.01.T01:cds;Parent=MsG0380015591.01.T01 |
Chr3 | CDS | 72262018 | 72262392 | 72262018 | ID=MsG0380015591.01.T01:cds;Parent=MsG0380015591.01.T01 |
Gene Sequence |
Protein sequence |