AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015609.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015609.01.T01 MTR_3g073250 79.293 198 29 3 36 222 196 392 2.00e-80 250
MsG0380015609.01.T01 MTR_3g073250 71.304 230 51 4 4 222 180 405 2.25e-80 249
MsG0380015609.01.T01 MTR_5g059940 55.851 188 69 4 45 222 64 247 5.45e-49 165
MsG0380015609.01.T01 MTR_5g060350 55.789 190 70 4 43 222 258 443 8.04e-49 168
MsG0380015609.01.T01 MTR_5g059880 61.268 142 45 2 91 222 173 314 9.05e-46 158
MsG0380015609.01.T01 MTR_5g059910 60.284 141 46 3 92 222 113 253 1.06e-42 149
MsG0380015609.01.T01 MTR_0685s0020 80.822 73 14 0 148 220 4 76 4.71e-35 125
MsG0380015609.01.T01 MTR_4g094415 54.400 125 46 3 109 222 162 286 6.25e-31 117
MsG0380015609.01.T01 MTR_4g094415 54.400 125 46 3 109 222 162 286 1.18e-30 118
MsG0380015609.01.T01 MTR_3g073260 96.296 54 2 0 169 222 23 76 2.61e-30 110
MsG0380015609.01.T01 MTR_8g098425 42.484 153 70 6 83 222 385 532 3.77e-21 91.7
MsG0380015609.01.T01 MTR_3g096230 39.310 145 71 6 93 222 226 368 2.43e-20 89.4
MsG0380015609.01.T01 MTR_3g096230 39.310 145 71 6 93 222 226 368 3.06e-20 89.0
MsG0380015609.01.T01 MTR_1g100250 33.333 195 96 7 48 222 355 535 4.29e-18 82.8
MsG0380015609.01.T01 MTR_8g093730 47.368 76 39 1 148 222 348 423 1.47e-16 78.2
MsG0380015609.01.T01 MTR_5g017890 41.772 79 44 1 146 222 419 497 2.24e-14 72.0
MsG0380015609.01.T01 MTR_1g105290 40.789 76 44 1 148 222 107 182 6.67e-14 70.5
MsG0380015609.01.T01 MTR_1g105290 40.789 76 44 1 148 222 107 182 6.70e-14 70.5
MsG0380015609.01.T01 MTR_1g105290 40.789 76 44 1 148 222 107 182 7.27e-14 70.5
MsG0380015609.01.T01 MTR_3g101210 34.884 129 69 4 108 222 305 432 6.57e-13 67.8
MsG0380015609.01.T01 MTR_4g075410 42.683 82 44 1 144 222 62 143 1.11e-12 67.0
MsG0380015609.01.T01 MTR_4g075410 42.683 82 44 1 144 222 62 143 1.21e-12 67.0
MsG0380015609.01.T01 MTR_3g101210 41.772 79 44 1 146 222 354 432 1.29e-12 66.6
MsG0380015609.01.T01 MTR_7g113490 32.308 130 69 4 110 222 68 195 1.29e-12 66.6
MsG0380015609.01.T01 MTR_4g074875 42.683 82 44 1 144 222 62 143 1.40e-12 67.0
MsG0380015609.01.T01 MTR_4g074875 42.683 82 44 1 144 222 62 143 1.43e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015609.01.T01 AT4G08500 46.626 163 68 7 71 222 301 455 8.20e-28 110
MsG0380015609.01.T01 AT4G08480 40.704 199 81 9 42 222 444 623 2.86e-25 103
MsG0380015609.01.T01 AT4G12020 47.059 170 69 9 65 222 1588 1748 3.01e-25 103
MsG0380015609.01.T01 AT4G12020 47.059 170 69 9 65 222 1588 1748 3.16e-25 103
MsG0380015609.01.T01 AT4G12020 47.059 170 69 9 65 222 1580 1740 3.35e-25 103
MsG0380015609.01.T01 AT4G12020 47.059 170 69 9 65 222 1580 1740 3.35e-25 103
MsG0380015609.01.T01 AT4G12020 47.059 170 69 9 65 222 1580 1740 3.37e-25 103
MsG0380015609.01.T01 AT4G12020 47.059 170 69 9 65 222 1588 1748 3.42e-25 103
MsG0380015609.01.T01 AT4G12020 47.059 170 69 9 65 222 1588 1748 3.42e-25 103
MsG0380015609.01.T01 AT4G12020 47.059 170 69 9 65 222 1580 1740 3.51e-25 103
MsG0380015609.01.T01 AT4G12020 47.059 170 69 9 65 222 1580 1740 3.73e-25 103
MsG0380015609.01.T01 AT4G12020 47.059 170 69 9 65 222 1513 1673 3.92e-25 103
MsG0380015609.01.T01 AT4G08470 62.162 74 28 0 149 222 352 425 2.20e-23 97.8
MsG0380015609.01.T01 AT4G08470 62.162 74 28 0 149 222 270 343 2.29e-23 97.8
MsG0380015609.01.T01 AT4G08470 62.162 74 28 0 149 222 352 425 2.49e-23 97.8
MsG0380015609.01.T01 AT1G63700 39.073 151 77 6 85 222 376 524 1.06e-18 84.7
MsG0380015609.01.T01 AT1G63700 39.073 151 77 6 85 222 376 524 1.06e-18 84.7
MsG0380015609.01.T01 AT1G53570 34.286 140 52 3 109 222 213 338 3.54e-17 80.1
MsG0380015609.01.T01 AT1G53570 34.286 140 52 3 109 222 213 338 3.55e-17 80.1
MsG0380015609.01.T01 AT1G53570 34.286 140 52 3 109 222 213 338 3.55e-17 80.1
MsG0380015609.01.T01 AT1G53570 34.286 140 52 3 109 222 213 338 3.62e-17 80.1
MsG0380015609.01.T01 AT1G53570 34.286 140 52 3 109 222 213 338 3.62e-17 80.1
MsG0380015609.01.T01 AT1G53570 34.286 140 52 3 109 222 213 338 4.57e-17 79.7
MsG0380015609.01.T01 AT1G53570 34.286 140 52 3 109 222 213 338 5.04e-17 79.7
MsG0380015609.01.T01 AT1G09000 29.143 175 96 5 63 222 35 196 6.15e-15 73.6
MsG0380015609.01.T01 AT1G09000 29.143 175 96 5 63 222 35 196 7.41e-15 73.6
MsG0380015609.01.T01 AT5G66850 44.304 79 42 1 146 222 393 471 3.15e-14 71.6
MsG0380015609.01.T01 AT5G66850 44.304 79 42 1 146 222 393 471 3.35e-14 71.6
MsG0380015609.01.T01 AT1G54960 30.496 141 83 3 97 222 55 195 4.33e-14 71.2
MsG0380015609.01.T01 AT1G54960 30.496 141 83 3 97 222 55 195 4.33e-14 71.2
MsG0380015609.01.T01 AT3G13530 36.752 117 67 4 112 222 28 143 1.38e-12 67.0
MsG0380015609.01.T01 AT3G06030 30.769 130 71 4 110 222 68 195 1.96e-12 66.2
MsG0380015609.01.T01 AT3G07980 42.308 78 42 1 148 222 66 143 1.32e-11 63.9
MsG0380015609.01.T01 AT3G07980 42.308 78 42 1 148 222 66 143 1.37e-11 63.9

Find 52 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGATTGTTGCTGGTCTTA+TGG 0.314797 3:-72485025 MsG0380015609.01.T01:CDS
TTTGGCTCCGGTTGGGGAAG+GGG 0.325778 3:-72485138 MsG0380015609.01.T01:CDS
ATAGGGATATGGTTAGGGTT+AGG 0.340790 3:-72485319 None:intergenic
TAGGGATATGGTTAGGGTTA+GGG 0.351064 3:-72485318 None:intergenic
AAACGCTTAATTCTCCCGTT+TGG 0.367480 3:+72484925 None:intergenic
GTGAAGATAGGGATATGGTT+AGG 0.370355 3:-72485325 None:intergenic
GAGGCTTCTAAGAGAACCTT+TGG 0.373930 3:+72482926 None:intergenic
TGAAGGATTTGGCTCCGGTT+GGG 0.376560 3:-72485145 MsG0380015609.01.T01:intron
CTTCACTCTCCTCCACTTCC+CGG 0.381690 3:+72485100 None:intergenic
TCTTCTTCCCCTTCCCCAAC+CGG 0.385753 3:+72485131 None:intergenic
GAGAGTGAAGGTGAGGAAGT+TGG 0.423875 3:-72485087 MsG0380015609.01.T01:CDS
GGAGATACATTATTCGATCT+AGG 0.427749 3:+72484946 None:intergenic
TGGTAGAGAAGAGGAGGTGG+TGG 0.445258 3:-72485067 MsG0380015609.01.T01:CDS
TACGCCTGGAAGCTGGCAAA+AGG 0.447885 3:-72484899 MsG0380015609.01.T01:CDS
ATGCAGAATCTGTCTTGTAT+AGG 0.452678 3:+72482866 None:intergenic
GAAGGATTTGGCTCCGGTTG+GGG 0.453965 3:-72485144 MsG0380015609.01.T01:intron
AGGATTGATGAGATTGTTGC+TGG 0.457925 3:-72485033 MsG0380015609.01.T01:CDS
GATAATATAGTTCAATACTA+TGG 0.459378 3:-72483842 MsG0380015609.01.T01:CDS
TTGAAGGATTTGGCTCCGGT+TGG 0.468399 3:-72485146 MsG0380015609.01.T01:intron
CGAATAATGTATCTCCAAAC+GGG 0.468780 3:-72484939 MsG0380015609.01.T01:CDS
AGAGGAGGTGGTGGATAATG+AGG 0.471570 3:-72485058 MsG0380015609.01.T01:CDS
TCAATACTATGGCACTGAAA+TGG 0.472389 3:-72483831 MsG0380015609.01.T01:intron
GGTTGGGGAAGGGGAAGAAG+AGG 0.475658 3:-72485129 MsG0380015609.01.T01:CDS
GATTTGGCTCCGGTTGGGGA+AGG 0.475659 3:-72485140 MsG0380015609.01.T01:CDS
GAGAAAGTAAATATAGTAAG+AGG 0.480206 3:+72483921 None:intergenic
ATTTGGCTCCGGTTGGGGAA+GGG 0.486760 3:-72485139 MsG0380015609.01.T01:CDS
TGAAGATAGGGATATGGTTA+GGG 0.487113 3:-72485324 None:intergenic
TCGTTTGGATCTGTCTATGA+AGG 0.489243 3:-72484857 MsG0380015609.01.T01:CDS
TCGAATAATGTATCTCCAAA+CGG 0.490117 3:-72484940 MsG0380015609.01.T01:CDS
GTCTTGTATAGGCAGCTACT+TGG 0.491647 3:+72482877 None:intergenic
GGGGAAGAAGAGGGTTTGAC+CGG 0.497010 3:-72485119 MsG0380015609.01.T01:CDS
AAGAGGGTTTGACCGGGAAG+TGG 0.504976 3:-72485112 MsG0380015609.01.T01:CDS
TAGGGTTAGGGTTAAAGATG+AGG 0.512027 3:-72485306 MsG0380015609.01.T01:CDS
AGTTGGTAGAGAAGAGGAGG+TGG 0.513985 3:-72485070 MsG0380015609.01.T01:CDS
TGAGGAAGTTGGTAGAGAAG+AGG 0.526588 3:-72485076 MsG0380015609.01.T01:CDS
TTTATTGAGCTTGTAACCAA+AGG 0.531413 3:-72482942 MsG0380015609.01.T01:CDS
ATGATCAAAATGTGGTTCAC+AGG 0.532797 3:-72482827 MsG0380015609.01.T01:CDS
GGAAGTTGGTAGAGAAGAGG+AGG 0.537250 3:-72485073 MsG0380015609.01.T01:CDS
AGTGGAGGAGAGTGAAGGTG+AGG 0.539500 3:-72485094 MsG0380015609.01.T01:CDS
GAAGAGTATACCTCTGATAG+AGG 0.550141 3:+72482907 None:intergenic
TCTTGTATAGGCAGCTACTT+GGG 0.552503 3:+72482878 None:intergenic
GGGAAGAAGAGGGTTTGACC+GGG 0.572710 3:-72485118 MsG0380015609.01.T01:CDS
AGGGTTTGACCGGGAAGTGG+AGG 0.574212 3:-72485109 MsG0380015609.01.T01:CDS
TGATTCTTCTAGTACTGCTA+CGG 0.588470 3:-72484971 MsG0380015609.01.T01:CDS
ACGCCTGGAAGCTGGCAAAA+GGG 0.589657 3:-72484898 MsG0380015609.01.T01:CDS
GTTGGGGAAGGGGAAGAAGA+GGG 0.594380 3:-72485128 MsG0380015609.01.T01:CDS
CTCTTAGAAGCCTCTATCAG+AGG 0.602930 3:-72482917 MsG0380015609.01.T01:CDS
TATACAAGACAGATTCTGCA+TGG 0.614090 3:-72482864 MsG0380015609.01.T01:CDS
CGGGAAGTGGAGGAGAGTGA+AGG 0.616922 3:-72485099 MsG0380015609.01.T01:CDS
GTACCTTCATGATCAAAATG+TGG 0.640859 3:-72482835 MsG0380015609.01.T01:CDS
AGGTGGTGGATAATGAGGCG+AGG 0.647698 3:-72485053 MsG0380015609.01.T01:CDS
CCTGGAAGCTGGCAAAAGGG+TGG 0.655756 3:-72484895 MsG0380015609.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACGATAAATTAATTAAGA+TGG + Chr3:72484864-72484883 None:intergenic 15.0%
!! AAATTCAAATATCACAATAT+AGG + Chr3:72484618-72484637 None:intergenic 15.0%
!! AACGATAAATTAATTAAGAT+GGG + Chr3:72484863-72484882 None:intergenic 15.0%
!! AATTCAAATATCACAATATA+GGG + Chr3:72484617-72484636 None:intergenic 15.0%
!!! CATTTTAAAACATTTCATTT+GGG - Chr3:72485060-72485079 MsG0380015609.01.T01:CDS 15.0%
!!! GAATAATCATTTTCAAATTA+AGG - Chr3:72483532-72483551 MsG0380015609.01.T01:intron 15.0%
!!! GTTTTAAAATGATAACAATA+AGG + Chr3:72485051-72485070 None:intergenic 15.0%
!!! TCATTTTAAAACATTTCATT+TGG - Chr3:72485059-72485078 MsG0380015609.01.T01:CDS 15.0%
!!! TGTAACAGATTTTTTTTTTT+GGG - Chr3:72483656-72483675 MsG0380015609.01.T01:intron 15.0%
!! AAAAAGTAAACTGCATTAAA+AGG + Chr3:72483752-72483771 None:intergenic 20.0%
!! CAAAAAAAAAAATCTGTTAC+AGG + Chr3:72483657-72483676 None:intergenic 20.0%
!! GATAATATAGTTCAATACTA+TGG - Chr3:72484293-72484312 MsG0380015609.01.T01:intron 20.0%
!! TATCACTTATAGCATAAAAT+AGG + Chr3:72483921-72483940 None:intergenic 20.0%
!! TTATACTGAGTAGAATAAAA+GGG - Chr3:72483565-72483584 MsG0380015609.01.T01:intron 20.0%
!!! ATTTTTTTTTTTGGGTAGAA+AGG - Chr3:72483664-72483683 MsG0380015609.01.T01:intron 20.0%
!!! CTGTAACAGATTTTTTTTTT+TGG - Chr3:72483655-72483674 MsG0380015609.01.T01:intron 20.0%
!!! TAGAAAGTCTTCTTAATTTT+TGG + Chr3:72484788-72484807 None:intergenic 20.0%
!!! TTTTTTTTTTTGGGTAGAAA+GGG - Chr3:72483665-72483684 MsG0380015609.01.T01:intron 20.0%
! AAAATCAAATTGCAAAAGAC+TGG + Chr3:72484349-72484368 None:intergenic 25.0%
! AATTATGTATAGTACTCTTG+TGG + Chr3:72484975-72484994 None:intergenic 25.0%
! ACCTATAAATTAAACTCAGA+CGG + Chr3:72484697-72484716 None:intergenic 25.0%
! CAGATTAAGTCAAACTTAAA+AGG - Chr3:72484482-72484501 MsG0380015609.01.T01:intron 25.0%
! GAGAAAGTAAATATAGTAAG+AGG + Chr3:72484217-72484236 None:intergenic 25.0%
! GTTATACTGAGTAGAATAAA+AGG - Chr3:72483564-72483583 MsG0380015609.01.T01:intron 25.0%
! TCTCATTCATGATTCAAATA+TGG + Chr3:72483446-72483465 None:intergenic 25.0%
! TTATCATGAATGCTCAATAT+CGG + Chr3:72484118-72484137 None:intergenic 25.0%
! TTCAGAAGATATGAATAACA+AGG + Chr3:72483951-72483970 None:intergenic 25.0%
!! TTTAAAACATTTCATTTGGG+TGG - Chr3:72485063-72485082 MsG0380015609.01.T01:CDS 25.0%
!!! GTTTACTTTTTGACTACAAT+AGG - Chr3:72483761-72483780 MsG0380015609.01.T01:intron 25.0%
!!! TTTTTTTTTTGGGTAGAAAG+GGG - Chr3:72483666-72483685 MsG0380015609.01.T01:intron 25.0%
AACGAAACTCAAATGCAAAT+AGG + Chr3:72483822-72483841 None:intergenic 30.0%
ACAATATAGGGTTATGATTC+AGG + Chr3:72484605-72484624 None:intergenic 30.0%
ACACACATATGCTAAAGTAA+GGG + Chr3:72483328-72483347 None:intergenic 30.0%
ACGAAACTCAAATGCAAATA+GGG + Chr3:72483821-72483840 None:intergenic 30.0%
AGTAGTAGTAGTGGTATTAA+TGG - Chr3:72482884-72482903 MsG0380015609.01.T01:CDS 30.0%
ATTTGAATCATGAATGAGAG+TGG - Chr3:72483447-72483466 MsG0380015609.01.T01:intron 30.0%
GAACAACATAGATTCTACAA+TGG + Chr3:72484383-72484402 None:intergenic 30.0%
GTCTATTACTTGTACTACAA+CGG - Chr3:72484947-72484966 MsG0380015609.01.T01:CDS 30.0%
TACTCAAGACAGTATTTAGT+CGG + Chr3:72484888-72484907 None:intergenic 30.0%
TCGAATAATGTATCTCCAAA+CGG - Chr3:72483195-72483214 MsG0380015609.01.T01:intron 30.0%
TGAGTAGAATAAAAGGGAAT+TGG - Chr3:72483571-72483590 MsG0380015609.01.T01:intron 30.0%
TTAGACTTGAGTTAATGCTT+AGG - Chr3:72483477-72483496 MsG0380015609.01.T01:intron 30.0%
TTCGACATGTTGCATAAAAT+AGG + Chr3:72484176-72484195 None:intergenic 30.0%
TTGCAAAAATGTTTAGTGTC+TGG + Chr3:72485018-72485037 None:intergenic 30.0%
TTTATTGAGCTTGTAACCAA+AGG - Chr3:72485193-72485212 MsG0380015609.01.T01:intron 30.0%
TTTGAATCATGAATGAGAGT+GGG - Chr3:72483448-72483467 MsG0380015609.01.T01:intron 30.0%
TTTGAATTGTGATGCTATGT+TGG - Chr3:72484648-72484667 MsG0380015609.01.T01:intron 30.0%
! AAAACAAAGTGTCTATCAAC+TGG - Chr3:72484037-72484056 MsG0380015609.01.T01:intron 30.0%
! ACCGTCTGAGTTTAATTTAT+AGG - Chr3:72484693-72484712 MsG0380015609.01.T01:intron 30.0%
! TATTCATTCTCTTTTCTCTC+AGG - Chr3:72484241-72484260 MsG0380015609.01.T01:intron 30.0%
!! GTAAAATTTTGAGAAGCGTA+AGG + Chr3:72484509-72484528 None:intergenic 30.0%
!! TTTTGACTACAATAGGATCA+CGG - Chr3:72483768-72483787 MsG0380015609.01.T01:intron 30.0%
!!! TATTTTGATTCGTACTCTGT+TGG + Chr3:72485116-72485135 None:intergenic 30.0%
AACATGTCGAATTGTTTGAG+AGG - Chr3:72484185-72484204 MsG0380015609.01.T01:intron 35.0%
AAGTTTCCTTGCTTGATCAA+GGG - Chr3:72484006-72484025 MsG0380015609.01.T01:intron 35.0%
ACATGTCGAATTGTTTGAGA+GGG - Chr3:72484186-72484205 MsG0380015609.01.T01:intron 35.0%
AGATGATAGGCAATGAAATG+TGG - Chr3:72484818-72484837 MsG0380015609.01.T01:intron 35.0%
AGTTAATGCTTAGGTAGTTG+AGG - Chr3:72483486-72483505 MsG0380015609.01.T01:intron 35.0%
ATAGGCAATGAAATGTGGTT+TGG - Chr3:72484823-72484842 MsG0380015609.01.T01:intron 35.0%
ATGATCAAAATGTGGTTCAC+AGG - Chr3:72485308-72485327 MsG0380015609.01.T01:CDS 35.0%
ATGCAGAATCTGTCTTGTAT+AGG + Chr3:72485272-72485291 None:intergenic 35.0%
CACACACATATGCTAAAGTA+AGG + Chr3:72483329-72483348 None:intergenic 35.0%
CATGAAAGAAGAAGACAAGA+CGG + Chr3:72484405-72484424 None:intergenic 35.0%
CATTTCATTGCCTATCATCT+AGG + Chr3:72484818-72484837 None:intergenic 35.0%
CGAAACTCAAATGCAAATAG+GGG + Chr3:72483820-72483839 None:intergenic 35.0%
CGAATAATGTATCTCCAAAC+GGG - Chr3:72483196-72483215 MsG0380015609.01.T01:intron 35.0%
CTATTGACAACCTAGATGAT+AGG - Chr3:72484805-72484824 MsG0380015609.01.T01:intron 35.0%
GGAGATACATTATTCGATCT+AGG + Chr3:72483192-72483211 None:intergenic 35.0%
GTACCTTCATGATCAAAATG+TGG - Chr3:72485300-72485319 MsG0380015609.01.T01:CDS 35.0%
GTTGTTAGTAGTAGTAGTAG+TGG - Chr3:72482875-72482894 MsG0380015609.01.T01:CDS 35.0%
TATACAAGACAGATTCTGCA+TGG - Chr3:72485271-72485290 MsG0380015609.01.T01:CDS 35.0%
TGATTCTTCTAGTACTGCTA+CGG - Chr3:72483164-72483183 MsG0380015609.01.T01:intron 35.0%
TTAAACTCAGACGGTTTGAT+AGG + Chr3:72484688-72484707 None:intergenic 35.0%
TTCTTCTTTCATGCTCACTT+TGG - Chr3:72484412-72484431 MsG0380015609.01.T01:intron 35.0%
TTTGACTACAATAGGATCAC+GGG - Chr3:72483769-72483788 MsG0380015609.01.T01:intron 35.0%
! CACAAGACAATCTTGATGAT+AGG - Chr3:72484912-72484931 MsG0380015609.01.T01:CDS 35.0%
! TCAATACTATGGCACTGAAA+TGG - Chr3:72484304-72484323 MsG0380015609.01.T01:intron 35.0%
!! ATTAAGCGTTTTATTACGCC+TGG - Chr3:72483222-72483241 MsG0380015609.01.T01:intron 35.0%
!! GAACCACATTTTGATCATGA+AGG + Chr3:72485306-72485325 None:intergenic 35.0%
!! TTGGGATCTTTTGAAGGATT+TGG - Chr3:72482979-72482998 MsG0380015609.01.T01:intron 35.0%
AAACGCTTAATTCTCCCGTT+TGG + Chr3:72483213-72483232 None:intergenic 40.0%
AACTCAAATGCAAATAGGGG+TGG + Chr3:72483817-72483836 None:intergenic 40.0%
ACTCAAATGCAAATAGGGGT+GGG + Chr3:72483816-72483835 None:intergenic 40.0%
AGGATTGATGAGATTGTTGC+TGG - Chr3:72483102-72483121 MsG0380015609.01.T01:intron 40.0%
AGTTTCCTTGCTTGATCAAG+GGG - Chr3:72484007-72484026 MsG0380015609.01.T01:intron 40.0%
ATCATGAATGAGAGTGGGAT+AGG - Chr3:72483453-72483472 MsG0380015609.01.T01:intron 40.0%
ATCCTGCAATAACATCAAGC+AGG + Chr3:72485155-72485174 None:intergenic 40.0%
ATCCTTCAAAAGATCCCAAG+TGG + Chr3:72482978-72482997 None:intergenic 40.0%
GAAGTTTCCTTGCTTGATCA+AGG - Chr3:72484005-72484024 MsG0380015609.01.T01:intron 40.0%
TAGGGTTAGGGTTAAAGATG+AGG - Chr3:72482829-72482848 MsG0380015609.01.T01:CDS 40.0%
TCCTGCAATAACATCAAGCA+GGG + Chr3:72485154-72485173 None:intergenic 40.0%
TCGTTTGGATCTGTCTATGA+AGG - Chr3:72483278-72483297 MsG0380015609.01.T01:intron 40.0%
TCTTGTATAGGCAGCTACTT+GGG + Chr3:72485260-72485279 None:intergenic 40.0%
TGATAACACGTGTTCCACTT+GGG - Chr3:72482961-72482980 MsG0380015609.01.T01:CDS 40.0%
! ACTATGGCACTGAAATGGTA+TGG - Chr3:72484309-72484328 MsG0380015609.01.T01:intron 40.0%
! CAATGAAATGTGGTTTGGAC+CGG - Chr3:72484828-72484847 MsG0380015609.01.T01:intron 40.0%
! GAAGAGTATACCTCTGATAG+AGG + Chr3:72485231-72485250 None:intergenic 40.0%
! TTCCACTTGGGATCTTTTGA+AGG - Chr3:72482973-72482992 MsG0380015609.01.T01:intron 40.0%
! TTGATAACACGTGTTCCACT+TGG - Chr3:72482960-72482979 MsG0380015609.01.T01:CDS 40.0%
!! TCTTTTGAAGGATTTGGCTC+CGG - Chr3:72482985-72483004 MsG0380015609.01.T01:intron 40.0%
!! TGAGATTGTTGCTGGTCTTA+TGG - Chr3:72483110-72483129 MsG0380015609.01.T01:intron 40.0%
!!! TGGCAAAAGGGTGGTTTTTT+GGG - Chr3:72483249-72483268 MsG0380015609.01.T01:intron 40.0%
AAGTGTCTATCAACTGGAGC+AGG - Chr3:72484043-72484062 MsG0380015609.01.T01:intron 45.0%
ACCCTGCTTGATGTTATTGC+AGG - Chr3:72485150-72485169 MsG0380015609.01.T01:intron 45.0%
CACGTGTTATCAACAACCAC+CGG + Chr3:72482953-72482972 None:intergenic 45.0%
CTCTTAGAAGCCTCTATCAG+AGG - Chr3:72485218-72485237 MsG0380015609.01.T01:intron 45.0%
GTCGAATTGTTTGAGAGGGT+TGG - Chr3:72484190-72484209 MsG0380015609.01.T01:intron 45.0%
GTCTTGTATAGGCAGCTACT+TGG + Chr3:72485261-72485280 None:intergenic 45.0%
! GAGGCTTCTAAGAGAACCTT+TGG + Chr3:72485212-72485231 None:intergenic 45.0%
! GGGAATTGGCTAGTTGAATC+TGG - Chr3:72483585-72483604 MsG0380015609.01.T01:intron 45.0%
! GTGATGCTATGTTGGTTGTC+AGG - Chr3:72484656-72484675 MsG0380015609.01.T01:intron 45.0%
! TTAAGATGGGTTCTTAGCGC+CGG + Chr3:72484850-72484869 None:intergenic 45.0%
!! GTTTTATTACGCCTGGAAGC+TGG - Chr3:72483229-72483248 MsG0380015609.01.T01:intron 45.0%
!! TGAGGAAGTTGGTAGAGAAG+AGG - Chr3:72483059-72483078 MsG0380015609.01.T01:intron 45.0%
!!! CTGGCAAAAGGGTGGTTTTT+TGG - Chr3:72483248-72483267 MsG0380015609.01.T01:intron 45.0%
!!! GCAAAAGGGTGGTTTTTTGG+GGG - Chr3:72483251-72483270 MsG0380015609.01.T01:intron 45.0%
!!! GGCAAAAGGGTGGTTTTTTG+GGG - Chr3:72483250-72483269 MsG0380015609.01.T01:intron 45.0%
!!! TTTTTTGGGGGTGGTTCGTT+TGG - Chr3:72483263-72483282 MsG0380015609.01.T01:intron 45.0%
CAAATAGGGGTGGGTCAACT+TGG + Chr3:72483807-72483826 None:intergenic 50.0%
CTTCTGAATCACTGCAGCGA+TGG - Chr3:72483963-72483982 MsG0380015609.01.T01:intron 50.0%
GAGAGTGAAGGTGAGGAAGT+TGG - Chr3:72483048-72483067 MsG0380015609.01.T01:intron 50.0%
GTGACAGTCACATGCTGGTA+GGG - Chr3:72483415-72483434 MsG0380015609.01.T01:intron 50.0%
TATCAACTGGAGCAGGTGAC+AGG - Chr3:72484050-72484069 MsG0380015609.01.T01:intron 50.0%
TGTGACAGTCACATGCTGGT+AGG - Chr3:72483414-72483433 MsG0380015609.01.T01:intron 50.0%
TGTGTGTGACAGTCACATGC+TGG - Chr3:72483410-72483429 MsG0380015609.01.T01:intron 50.0%
TTGCTTGATCAAGGGGAGCA+GGG - Chr3:72484014-72484033 MsG0380015609.01.T01:intron 50.0%
! GCTATGTTGGTTGTCAGGTC+TGG - Chr3:72484661-72484680 MsG0380015609.01.T01:intron 50.0%
! TGAAGGATTTGGCTCCGGTT+GGG - Chr3:72482990-72483009 MsG0380015609.01.T01:intron 50.0%
! TTGAAGGATTTGGCTCCGGT+TGG - Chr3:72482989-72483008 MsG0380015609.01.T01:intron 50.0%
!! AGAGGAGGTGGTGGATAATG+AGG - Chr3:72483077-72483096 MsG0380015609.01.T01:intron 50.0%
!! AGTTGGTAGAGAAGAGGAGG+TGG - Chr3:72483065-72483084 MsG0380015609.01.T01:intron 50.0%
!! GGAAGTTGGTAGAGAAGAGG+AGG - Chr3:72483062-72483081 MsG0380015609.01.T01:intron 50.0%
!!! AAAGGGTGGTTTTTTGGGGG+TGG - Chr3:72483254-72483273 MsG0380015609.01.T01:intron 50.0%
!!! TTTTTGGGTAGAAAGGGGCG+AGG - Chr3:72483671-72483690 MsG0380015609.01.T01:intron 50.0%
AAGAGGGTTTGACCGGGAAG+TGG - Chr3:72483023-72483042 MsG0380015609.01.T01:intron 55.0%
ACGCCTGGAAGCTGGCAAAA+GGG - Chr3:72483237-72483256 MsG0380015609.01.T01:intron 55.0%
AGTGGAGGAGAGTGAAGGTG+AGG - Chr3:72483041-72483060 MsG0380015609.01.T01:intron 55.0%
ATAGGGGTGGGTCAACTTGG+AGG + Chr3:72483804-72483823 None:intergenic 55.0%
CGATGATTAAGCCGCCACCT+GGG - Chr3:72482918-72482937 MsG0380015609.01.T01:CDS 55.0%
CTGCTCCCCTTGATCAAGCA+AGG + Chr3:72484015-72484034 None:intergenic 55.0%
CTTCACTCTCCTCCACTTCC+CGG + Chr3:72483038-72483057 None:intergenic 55.0%
CTTGCTTGATCAAGGGGAGC+AGG - Chr3:72484013-72484032 MsG0380015609.01.T01:intron 55.0%
GGGAAGAAGAGGGTTTGACC+GGG - Chr3:72483017-72483036 MsG0380015609.01.T01:intron 55.0%
GGGGAAGAAGAGGGTTTGAC+CGG - Chr3:72483016-72483035 MsG0380015609.01.T01:intron 55.0%
GTTGGGGAAGGGGAAGAAGA+GGG - Chr3:72483007-72483026 MsG0380015609.01.T01:intron 55.0%
TACGCCTGGAAGCTGGCAAA+AGG - Chr3:72483236-72483255 MsG0380015609.01.T01:intron 55.0%
TAGGGGTGGGTCAACTTGGA+GGG + Chr3:72483803-72483822 None:intergenic 55.0%
TCTTCTTCCCCTTCCCCAAC+CGG + Chr3:72483007-72483026 None:intergenic 55.0%
TGGTAGAGAAGAGGAGGTGG+TGG - Chr3:72483068-72483087 MsG0380015609.01.T01:intron 55.0%
! ATTTGGCTCCGGTTGGGGAA+GGG - Chr3:72482996-72483015 MsG0380015609.01.T01:intron 55.0%
! CCAGGTGGCGGCTTAATCAT+CGG + Chr3:72482920-72482939 None:intergenic 55.0%
! GAAGGATTTGGCTCCGGTTG+GGG - Chr3:72482991-72483010 MsG0380015609.01.T01:intron 55.0%
!! AGGTGGTGGATAATGAGGCG+AGG - Chr3:72483082-72483101 MsG0380015609.01.T01:intron 55.0%
ACCACCGGAACTCTCATCCC+AGG + Chr3:72482938-72482957 None:intergenic 60.0%
ACCGGAACTCTCATCCCAGG+TGG + Chr3:72482935-72482954 None:intergenic 60.0%
ACCTGGGATGAGAGTTCCGG+TGG - Chr3:72482934-72482953 MsG0380015609.01.T01:CDS 60.0%
AGGGTTTGACCGGGAAGTGG+AGG - Chr3:72483026-72483045 MsG0380015609.01.T01:intron 60.0%
CCGATGATTAAGCCGCCACC+TGG - Chr3:72482917-72482936 MsG0380015609.01.T01:CDS 60.0%
CCTGGAAGCTGGCAAAAGGG+TGG - Chr3:72483240-72483259 MsG0380015609.01.T01:intron 60.0%
CGGGAAGTGGAGGAGAGTGA+AGG - Chr3:72483036-72483055 MsG0380015609.01.T01:intron 60.0%
GCCACCTGGGATGAGAGTTC+CGG - Chr3:72482931-72482950 MsG0380015609.01.T01:CDS 60.0%
GGAACTCTCATCCCAGGTGG+CGG + Chr3:72482932-72482951 None:intergenic 60.0%
GGTTGGGGAAGGGGAAGAAG+AGG - Chr3:72483006-72483025 MsG0380015609.01.T01:intron 60.0%
! CCACCCTTTTGCCAGCTTCC+AGG + Chr3:72483243-72483262 None:intergenic 60.0%
! GATTTGGCTCCGGTTGGGGA+AGG - Chr3:72482995-72483014 MsG0380015609.01.T01:intron 60.0%
! GGTGGCGGCTTAATCATCGG+TGG + Chr3:72482917-72482936 None:intergenic 60.0%
! TTTGGCTCCGGTTGGGGAAG+GGG - Chr3:72482997-72483016 MsG0380015609.01.T01:intron 60.0%
GGGGCGAGGTTGCTCAGACA+TGG - Chr3:72483685-72483704 MsG0380015609.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 72482824 72485333 72482824 ID=MsG0380015609.01;Name=MsG0380015609.01
Chr3 mRNA 72482824 72485333 72482824 ID=MsG0380015609.01.T01;Parent=MsG0380015609.01;Name=MsG0380015609.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0.33|0|1|0.66|0.5|4|0|222
Chr3 exon 72485261 72485333 72485261 ID=MsG0380015609.01.T01:exon:24098;Parent=MsG0380015609.01.T01
Chr3 exon 72484848 72485162 72484848 ID=MsG0380015609.01.T01:exon:24097;Parent=MsG0380015609.01.T01
Chr3 exon 72483832 72483950 72483832 ID=MsG0380015609.01.T01:exon:24096;Parent=MsG0380015609.01.T01
Chr3 exon 72482824 72482985 72482824 ID=MsG0380015609.01.T01:exon:24095;Parent=MsG0380015609.01.T01
Chr3 CDS 72485261 72485333 72485261 ID=MsG0380015609.01.T01:cds;Parent=MsG0380015609.01.T01
Chr3 CDS 72484848 72485162 72484848 ID=MsG0380015609.01.T01:cds;Parent=MsG0380015609.01.T01
Chr3 CDS 72483832 72483950 72483832 ID=MsG0380015609.01.T01:cds;Parent=MsG0380015609.01.T01
Chr3 CDS 72482824 72482985 72482824 ID=MsG0380015609.01.T01:cds;Parent=MsG0380015609.01.T01
Gene Sequence

>MsG0380015609.01.T01

ATGGTTAGGGTTAGGGTTAAAGATGAGGTTGATGACAGTGAGAGTGTTGTTGTTGTTAGTAGTAGTAGTAGTGGATTTGGCTCCGGTTGGGGAAGGGGAAGAAGAGGGTTTGACCGGGAAGTGGAGGAGAGTGAAGGTGAGGAAGTTGGTAGAGAAGAGGAGGTGGTGGATAATGAGGCGAGGATTGATGAGATTGTTGCTGGTCTTATGGAATCGAGTTTGTTTAGTGATTCGAATGAAGATGATTCTTCTAGTACTGCTACGGAACCTAGATCGAATAATGTATCTCCAAACGGGAGAATTAAGCGTTTTATTACGCCTGGAAGCTGGCAAAAGGGTGGTTTTTTGGGGGTGGTTCGTTTGGATCTGTCTATGAAGGAATTTCTGAGGTTGGTCCTCTTACTATATTTACTTTCTCACATTATTCATTCTCTTTTCTCTCAGGAAATTGCACTTTTGAGTCGTTTTGAACATGATAATATAGTTCAATACTATGGCACTGAAATGGATGAATCTAAGCTTCATATCTTTATTGAGCTTGTAACCAAAGGTTCTCTTAGAAGCCTCTATCAGAGGTATACTCTTCGAGATTCCCAAGTAGCTGCCTATACAAGACAGATTCTGCATGGTTTGAAGTACCTTCATGATCAAAATGTGGTTCACAGGTAG
Protein sequence

>MsG0380015609.01.T01

MVRVRVKDEVDDSESVVVVSSSSSGFGSGWGRGRRGFDREVEESEGEEVGREEEVVDNEARIDEIVAGLMESSLFSDSNEDDSSSTATEPRSNNVSPNGRIKRFITPGSWQKGGFLGVVRLDLSMKEFLRLVLLLYLLSHIIHSLFSQEIALLSRFEHDNIVQYYGTEMDESKLHIFIELVTKGSLRSLYQRYTLRDSQVAAYTRQILHGLKYLHDQNVVHR*