AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015880.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015880.01.T01 MTR_3g079390 97.572 453 11 0 1 453 1 453 0.0 913
MsG0380015880.01.T01 MTR_6g009610 40.183 438 228 5 20 452 5 413 1.91e-102 312
MsG0380015880.01.T01 MTR_6g010920 40.139 431 226 5 21 448 6 407 4.99e-102 310
MsG0380015880.01.T01 MTR_3g107590 42.212 443 221 8 20 452 6 423 1.25e-101 310
MsG0380015880.01.T01 MTR_6g011050 40.139 431 228 5 20 448 5 407 2.02e-98 301
MsG0380015880.01.T01 MTR_0024s0080 41.648 437 216 8 21 452 6 408 2.26e-98 301
MsG0380015880.01.T01 MTR_6g010890 39.101 445 230 7 20 448 5 424 2.64e-97 299
MsG0380015880.01.T01 MTR_6g011060 40.271 442 230 7 20 452 5 421 3.89e-97 298
MsG0380015880.01.T01 MTR_6g010810 37.900 438 234 9 22 452 4 410 6.13e-95 292
MsG0380015880.01.T01 MTR_6g009590 39.456 441 227 9 20 452 5 413 2.66e-94 291
MsG0380015880.01.T01 MTR_2g035640 45.722 374 168 10 77 445 1 344 2.52e-88 274
MsG0380015880.01.T01 MTR_6g009170 40.045 442 223 10 22 449 7 420 5.78e-85 267
MsG0380015880.01.T01 MTR_6g010850 38.617 347 176 7 112 452 36 351 7.13e-71 229
MsG0380015880.01.T01 MTR_8g005285 31.919 495 274 13 1 441 1 486 6.86e-63 212
MsG0380015880.01.T01 MTR_8g005225 35.440 443 220 15 40 444 37 451 1.60e-62 210
MsG0380015880.01.T01 MTR_8g005295 32.669 502 251 17 13 441 13 500 2.05e-61 208
MsG0380015880.01.T01 MTR_8g005325 33.408 449 248 14 22 442 38 463 3.17e-61 207
MsG0380015880.01.T01 MTR_8g005235 32.517 449 241 15 27 442 14 433 4.05e-60 203
MsG0380015880.01.T01 MTR_8g005265 31.429 455 234 12 36 443 23 446 2.74e-57 196
MsG0380015880.01.T01 MTR_8g006525 33.496 409 215 13 27 401 15 400 8.08e-56 191
MsG0380015880.01.T01 MTR_2g036320 30.952 420 254 13 41 448 68 463 2.57e-50 178
MsG0380015880.01.T01 MTR_7g011980 43.662 213 114 2 246 452 132 344 5.24e-50 174
MsG0380015880.01.T01 MTR_7g011980 38.462 182 84 4 17 196 2 157 5.64e-27 111
MsG0380015880.01.T01 MTR_0209s0060 31.795 390 222 12 22 387 11 380 1.02e-49 175
MsG0380015880.01.T01 MTR_0209s0030 31.795 390 222 12 22 387 11 380 1.02e-49 175
MsG0380015880.01.T01 MTR_6g009580 43.396 212 116 2 245 452 26 237 1.49e-49 169
MsG0380015880.01.T01 MTR_2g041180 30.047 426 263 12 40 453 50 452 3.09e-48 172
MsG0380015880.01.T01 MTR_5g016570 32.468 462 276 14 20 453 77 530 2.31e-47 171
MsG0380015880.01.T01 MTR_5g086340 26.850 473 278 12 4 449 1 432 4.15e-39 147
MsG0380015880.01.T01 MTR_6g009600 43.182 132 75 0 274 405 21 152 6.90e-32 119
MsG0380015880.01.T01 MTR_4g112660 25.400 437 212 12 36 444 2 352 5.28e-29 117
MsG0380015880.01.T01 MTR_8g042830 23.831 449 237 12 39 453 40 417 9.04e-29 117
MsG0380015880.01.T01 MTR_7g059540 25.949 474 286 18 22 449 12 466 8.16e-27 112
MsG0380015880.01.T01 MTR_7g059540 26.132 486 280 19 22 449 11 475 4.56e-26 110
MsG0380015880.01.T01 MTR_1g040690 23.913 506 273 16 22 453 9 476 1.35e-24 106
MsG0380015880.01.T01 MTR_3g107600 31.128 257 136 5 210 452 359 588 3.50e-24 106
MsG0380015880.01.T01 MTR_7g060310 23.819 487 293 19 22 445 12 483 8.33e-23 101
MsG0380015880.01.T01 MTR_1g038270 22.244 499 305 10 21 440 3 497 1.37e-20 94.7
MsG0380015880.01.T01 MTR_5g086230 33.520 179 98 7 39 203 27 198 5.13e-20 88.2
MsG0380015880.01.T01 MTR_6g010830 48.039 102 47 3 325 424 1 98 5.31e-20 86.3
MsG0380015880.01.T01 MTR_5g087580 28.324 173 122 2 277 449 44 214 5.72e-20 88.6
MsG0380015880.01.T01 MTR_5g086260 32.292 192 114 5 266 449 125 308 5.73e-20 90.9
MsG0380015880.01.T01 MTR_7g060260 24.545 440 275 17 30 445 16 422 1.45e-19 90.9
MsG0380015880.01.T01 MTR_7g060020 24.421 475 282 23 12 453 1 431 1.87e-19 90.9
MsG0380015880.01.T01 MTR_8g042170 25.000 452 267 16 42 445 26 453 2.71e-19 90.5
MsG0380015880.01.T01 MTR_3g466740 22.581 496 298 15 13 451 3 469 2.53e-17 84.3
MsG0380015880.01.T01 MTR_2g036310 33.108 148 95 4 307 452 16 161 1.20e-16 77.8
MsG0380015880.01.T01 MTR_0067s0010 24.074 486 312 16 2 451 12 476 1.78e-16 82.0
MsG0380015880.01.T01 MTR_7g068160 22.830 530 292 19 25 453 21 534 2.24e-16 81.6
MsG0380015880.01.T01 MTR_7g060160 23.928 443 264 21 30 453 15 403 2.24e-16 81.3
MsG0380015880.01.T01 MTR_7g068070 33.889 180 95 6 20 182 9 181 2.73e-16 81.6
MsG0380015880.01.T01 MTR_7g060320 24.565 460 288 16 30 445 16 460 5.07e-16 80.5
MsG0380015880.01.T01 MTR_7g067970 31.522 184 103 4 28 192 17 196 1.03e-15 79.7
MsG0380015880.01.T01 MTR_7g059525 30.769 169 109 4 281 444 113 278 3.01e-15 76.3
MsG0380015880.01.T01 MTR_7g067940 33.529 170 105 3 20 182 9 177 5.85e-15 77.4
MsG0380015880.01.T01 MTR_7g060080 31.429 175 112 5 280 449 20 191 1.32e-14 72.8
MsG0380015880.01.T01 MTR_7g059480 30.682 176 110 5 281 449 603 773 1.38e-14 76.6
MsG0380015880.01.T01 MTR_7g067660 32.571 175 101 6 25 182 1 175 1.43e-14 75.5
MsG0380015880.01.T01 MTR_4g009590 30.055 183 107 3 277 449 379 550 6.49e-14 74.3
MsG0380015880.01.T01 MTR_4g009590 27.381 168 106 4 40 192 42 208 4.50e-11 65.5
MsG0380015880.01.T01 MTR_4g015290 28.421 190 118 5 22 209 10 183 7.59e-14 71.2
MsG0380015880.01.T01 MTR_7g067600 32.000 175 97 8 42 194 30 204 8.85e-14 73.6
MsG0380015880.01.T01 MTR_7g446270 32.759 174 109 4 277 445 310 480 2.09e-13 72.4
MsG0380015880.01.T01 MTR_4g009620 29.891 184 106 3 277 449 377 548 7.20e-13 70.9
MsG0380015880.01.T01 MTR_7g059810 24.777 448 269 19 19 429 8 424 8.05e-13 70.5
MsG0380015880.01.T01 MTR_8g037923 28.221 163 101 4 301 449 310 470 4.65e-12 68.2
MsG0380015880.01.T01 MTR_7g067300 35.616 146 79 6 45 175 27 172 2.09e-11 66.2
MsG0380015880.01.T01 MTR_7g068040 31.944 144 72 4 45 182 22 145 3.51e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015880.01.T01 AT5G11290 34.842 442 244 11 21 452 15 422 7.90e-78 248
MsG0380015880.01.T01 AT4G31980 34.452 447 251 11 14 452 268 680 7.06e-70 234
MsG0380015880.01.T01 AT2G28580 33.790 438 239 13 40 453 41 451 2.09e-61 207
MsG0380015880.01.T01 AT2G28580 33.790 438 239 13 40 453 109 519 6.08e-61 207
MsG0380015880.01.T01 AT2G28580 33.790 438 239 13 40 453 123 533 8.16e-61 207
MsG0380015880.01.T01 AT2G44930 32.805 442 241 13 40 452 84 498 1.37e-60 206
MsG0380015880.01.T01 AT2G36430 31.604 424 250 6 21 426 18 419 2.19e-60 204
MsG0380015880.01.T01 AT2G28580 33.796 432 230 14 40 453 109 502 3.38e-59 202
MsG0380015880.01.T01 AT2G28580 33.796 432 230 14 40 453 123 516 4.65e-59 202
MsG0380015880.01.T01 AT3G50120 29.694 458 289 10 20 453 79 527 1.11e-56 196
MsG0380015880.01.T01 AT5G11290 33.161 386 215 10 77 452 1 353 2.10e-56 191
MsG0380015880.01.T01 AT3G50140 29.194 459 286 9 13 445 82 527 3.12e-55 192
MsG0380015880.01.T01 AT3G50170 29.581 453 254 9 38 453 111 535 3.82e-55 192
MsG0380015880.01.T01 AT3G50160 29.762 420 261 7 41 453 105 497 5.49e-55 191
MsG0380015880.01.T01 AT3G50150 29.263 434 271 9 39 453 89 505 1.75e-54 190
MsG0380015880.01.T01 AT1G67150 33.099 426 238 13 41 449 7 402 5.02e-53 183
MsG0380015880.01.T01 AT1G67150 33.099 426 238 13 41 449 7 402 5.02e-53 183
MsG0380015880.01.T01 AT1G67150 32.326 430 240 12 41 449 7 406 3.12e-52 181
MsG0380015880.01.T01 AT3G47250 26.039 457 311 9 15 453 29 476 5.64e-49 174
MsG0380015880.01.T01 AT3G47250 26.039 457 311 9 15 453 29 476 5.64e-49 174
MsG0380015880.01.T01 AT3G47250 26.039 457 311 9 15 453 29 476 5.64e-49 174
MsG0380015880.01.T01 AT3G47200 29.252 441 254 14 40 451 46 457 3.30e-48 172
MsG0380015880.01.T01 AT3G47200 29.252 441 254 14 40 451 46 457 3.30e-48 172
MsG0380015880.01.T01 AT3G50190 28.051 467 268 12 13 453 65 489 5.39e-48 172
MsG0380015880.01.T01 AT3G50180 31.034 435 255 14 38 453 176 584 1.43e-47 172
MsG0380015880.01.T01 AT3G50130 29.348 460 278 11 1 431 97 538 2.89e-47 171
MsG0380015880.01.T01 AT5G22540 27.475 404 249 10 40 426 31 407 1.83e-44 161
MsG0380015880.01.T01 AT5G22550 28.448 464 245 14 40 445 44 478 1.08e-43 160
MsG0380015880.01.T01 AT3G44710 27.974 454 273 12 39 445 46 492 1.46e-42 157
MsG0380015880.01.T01 AT3G47210 29.545 396 235 10 16 396 69 435 3.10e-42 156
MsG0380015880.01.T01 AT2G28580 33.143 350 185 12 40 365 123 447 2.97e-41 153
MsG0380015880.01.T01 AT3G60470 39.683 189 108 4 267 453 354 538 7.86e-37 142
MsG0380015880.01.T01 AT3G60470 32.364 275 125 11 41 286 33 275 1.85e-23 103
MsG0380015880.01.T01 AT1G67150 27.488 422 224 12 41 449 7 359 1.40e-33 130
MsG0380015880.01.T01 AT1G65985 27.313 454 227 12 37 426 11 425 2.58e-33 131
MsG0380015880.01.T01 AT1G65985 27.313 454 227 12 37 426 11 425 2.58e-33 131
MsG0380015880.01.T01 AT5G22550 26.201 458 214 14 40 445 44 429 7.57e-31 124
MsG0380015880.01.T01 AT3G50140 25.767 326 203 9 13 312 82 394 5.29e-25 107
MsG0380015880.01.T01 AT5G22560 36.905 168 86 5 40 187 47 214 4.22e-24 105
MsG0380015880.01.T01 AT5G22560 30.337 178 122 2 269 445 329 505 3.32e-16 81.3
MsG0380015880.01.T01 AT3G50150 32.203 177 110 4 39 208 89 262 2.51e-23 102
MsG0380015880.01.T01 AT3G50170 28.620 297 177 10 38 312 111 394 3.32e-23 101
MsG0380015880.01.T01 AT3G50190 26.316 323 173 11 13 312 65 345 3.13e-21 95.5
MsG0380015880.01.T01 AT3G50190 26.316 323 173 11 13 312 65 345 3.13e-21 95.5
MsG0380015880.01.T01 AT3G50190 26.316 323 173 11 13 312 65 345 3.21e-21 95.1
MsG0380015880.01.T01 AT3G44700 32.331 133 78 5 39 159 47 179 1.76e-16 78.6
MsG0380015880.01.T01 AT3G44700 30.159 126 63 4 39 159 47 152 8.13e-13 67.4

Find 66 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCTCTTTGGTAACATATA+AGG 0.215645 3:+76208868 None:intergenic
GAAATGGAGTTACAACAAAA+TGG 0.335589 3:-76209642 MsG0380015880.01.T01:CDS
TCTTTGCCTTAATGTTGTTC+AGG 0.346267 3:-76208506 MsG0380015880.01.T01:CDS
TGGTTGGAGTATAGGCTTCT+TGG 0.347374 3:+76209490 None:intergenic
TTCTTGTTATTTGTTTCATT+CGG 0.367626 3:+76209003 None:intergenic
TCCATTGGTCCATTTCACTA+TGG 0.372243 3:-76209462 MsG0380015880.01.T01:CDS
GGACCCTTCTCATAAATATA+AGG 0.375449 3:-76208428 MsG0380015880.01.T01:CDS
CGATGCAACTAGGTTCTGTT+AGG 0.377222 3:+76209097 None:intergenic
GATAGCGCTCATGAAAATAA+TGG 0.383535 3:+76208971 None:intergenic
TTTCTTAGAAAGGACTCATA+AGG 0.390725 3:-76209385 MsG0380015880.01.T01:CDS
TTCTTAGAAAGGACTCATAA+GGG 0.401442 3:-76209384 MsG0380015880.01.T01:CDS
ATCATCACTAGTTTGTTCAA+TGG 0.413743 3:+76209296 None:intergenic
TACTTGAAAATCAGCTTCCT+TGG 0.414379 3:-76209143 MsG0380015880.01.T01:CDS
GGAAACAATGGTTGGAGTAT+AGG 0.416612 3:+76209482 None:intergenic
TATACAACAACGTGAAACTA+AGG 0.426980 3:+76209545 None:intergenic
AATTGCATACTAACTTGATC+AGG 0.427497 3:+76208931 None:intergenic
CTCTTGTCTCCATAGTGAAA+TGG 0.427686 3:+76209453 None:intergenic
CAAAAGGGTAATGAAGGAAA+TGG 0.431557 3:-76209658 None:intergenic
GAAAGGACTCATAAGGGGTT+AGG 0.441048 3:-76209378 MsG0380015880.01.T01:CDS
ATCACACCTCAACCATGGTT+TGG 0.444505 3:+76209185 None:intergenic
TTACACCTGCTTCTACCAAC+TGG 0.454214 3:+76208812 None:intergenic
CAGTGACAAACTTCGAATCT+TGG 0.457630 3:+76208721 None:intergenic
AGACAAGAGGTTAGAGTCGA+TGG 0.475451 3:-76209439 MsG0380015880.01.T01:CDS
AAAATTGAATTGCTTCTATG+AGG 0.477076 3:-76208449 MsG0380015880.01.T01:CDS
ACTCCAACCATTGTTTCCAT+TGG 0.477400 3:-76209477 MsG0380015880.01.T01:CDS
GCAAGCCAGTTGGTAGAAGC+AGG 0.484097 3:-76208817 MsG0380015880.01.T01:CDS
CATTCGGCAATATACTCTGC+AGG 0.486719 3:+76209019 None:intergenic
GGGAATAATGATTAACACAT+TGG 0.486792 3:-76208563 MsG0380015880.01.T01:CDS
GGAATAATGATTAACACATT+GGG 0.489145 3:-76208562 MsG0380015880.01.T01:CDS
GTTGATAAACTTGTTGAGAA+GGG 0.492457 3:-76208583 MsG0380015880.01.T01:CDS
TTGCCTTATATTTATGAGAA+GGG 0.492667 3:+76208425 None:intergenic
AACTGATTATACAATCCTGT+TGG 0.496727 3:-76208632 MsG0380015880.01.T01:CDS
CTTGAGTTAAAATTTGCAAA+GGG 0.497786 3:-76208757 MsG0380015880.01.T01:CDS
ATGACTACTTCAGCACTCCT+TGG 0.505452 3:-76208393 MsG0380015880.01.T01:CDS
TGTTGATAAACTTGTTGAGA+AGG 0.509661 3:-76208584 MsG0380015880.01.T01:CDS
TATCAATCAAGAAATCCAAC+AGG 0.510140 3:+76208617 None:intergenic
CTCAATTATAAAACACGCAT+CGG 0.516062 3:+76209254 None:intergenic
TGTTATCCAAACCATGGTTG+AGG 0.518930 3:-76209191 MsG0380015880.01.T01:CDS
ATTGCCTTATATTTATGAGA+AGG 0.519451 3:+76208424 None:intergenic
GTTGTTCAGGAAAATATCAA+TGG 0.526971 3:-76208493 MsG0380015880.01.T01:CDS
ACCTTATATGTTACCAAAGA+GGG 0.533248 3:-76208869 MsG0380015880.01.T01:CDS
TCAGTTATATAAGTCTGAAA+CGG 0.538300 3:+76208649 None:intergenic
CAAGATTCGAAGTTTGTCAC+TGG 0.539415 3:-76208720 MsG0380015880.01.T01:CDS
CACCTTATATGTTACCAAAG+AGG 0.549175 3:-76208870 MsG0380015880.01.T01:CDS
CTCTTTGGTAACATATAAGG+TGG 0.561671 3:+76208871 None:intergenic
GATAACAAAGGATCTTCTTG+TGG 0.571053 3:+76209207 None:intergenic
GGACCAATGGAAACAATGGT+TGG 0.573240 3:+76209474 None:intergenic
ACCTAGTTGCATCGATGGCG+AGG 0.574330 3:-76209088 MsG0380015880.01.T01:CDS
ATCCTTTGTTATCCAAACCA+TGG 0.575693 3:-76209197 MsG0380015880.01.T01:CDS
ACAGAACCTAGTTGCATCGA+TGG 0.578013 3:-76209093 MsG0380015880.01.T01:CDS
ACTTGAGTTAAAATTTGCAA+AGG 0.580952 3:-76208758 MsG0380015880.01.T01:CDS
ACCTCGCCATCGATGCAACT+AGG 0.581669 3:+76209087 None:intergenic
TCCATAGTGAAATGGACCAA+TGG 0.585386 3:+76209461 None:intergenic
CGATGGAAGATCTCAAATTG+AGG 0.599019 3:-76209422 MsG0380015880.01.T01:CDS
AAGGGGTTAGGAGATTGCAT+TGG 0.602889 3:-76209366 MsG0380015880.01.T01:CDS
TCTTAGAAAGGACTCATAAG+GGG 0.608306 3:-76209383 MsG0380015880.01.T01:CDS
CATTTCACTATGGAGACAAG+AGG 0.615325 3:-76209452 MsG0380015880.01.T01:CDS
TTTGTTTAGTGCAAGCCAGT+TGG 0.619716 3:-76208827 MsG0380015880.01.T01:CDS
TTCACATCACACCTCAACCA+TGG 0.621590 3:+76209180 None:intergenic
TAGAGAGTTGATAATTCACA+TGG 0.626745 3:-76209595 MsG0380015880.01.T01:CDS
TTTGGTAATCTTGACCAACA+TGG 0.628315 3:+76208785 None:intergenic
ATACAACAACGTGAAACTAA+GGG 0.633177 3:+76209546 None:intergenic
AACCATGGTTTGGATAACAA+AGG 0.651671 3:+76209195 None:intergenic
GCAGGTGTAAAACTCCATGT+TGG 0.655115 3:-76208799 MsG0380015880.01.T01:CDS
AAATGGACCAATGGAAACAA+TGG 0.670006 3:+76209470 None:intergenic
AAATCTTCAAGAACAAACCA+AGG 0.673568 3:+76209126 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATAATTGAGTATTTTCTT+CGG - Chr3:76208715-76208734 MsG0380015880.01.T01:CDS 15.0%
!!! TGTTGCTTTTCATTATTTTA+AGG - Chr3:76208908-76208927 MsG0380015880.01.T01:CDS 20.0%
!!! TTCTTGTTATTTGTTTCATT+CGG + Chr3:76208957-76208976 None:intergenic 20.0%
! AAAATTGAATTGCTTCTATG+AGG - Chr3:76209508-76209527 MsG0380015880.01.T01:CDS 25.0%
! ACTTGAGTTAAAATTTGCAA+AGG - Chr3:76209199-76209218 MsG0380015880.01.T01:CDS 25.0%
! ATTGCCTTATATTTATGAGA+AGG + Chr3:76209536-76209555 None:intergenic 25.0%
! CTTGAGTTAAAATTTGCAAA+GGG - Chr3:76209200-76209219 MsG0380015880.01.T01:CDS 25.0%
! GGAATAATGATTAACACATT+GGG - Chr3:76209395-76209414 MsG0380015880.01.T01:CDS 25.0%
! TCAGTTATATAAGTCTGAAA+CGG + Chr3:76209311-76209330 None:intergenic 25.0%
! TTGCCTTATATTTATGAGAA+GGG + Chr3:76209535-76209554 None:intergenic 25.0%
!! TATTTTCCTGAACAACATTA+AGG + Chr3:76209460-76209479 None:intergenic 25.0%
!! TTTCTAAGAAAAAACTCTTG+AGG + Chr3:76208563-76208582 None:intergenic 25.0%
!!! ACAAAAGATGTTATTTTCCA+AGG + Chr3:76209584-76209603 None:intergenic 25.0%
!!! TCAAGAGTTTTTTCTTAGAA+AGG - Chr3:76208562-76208581 MsG0380015880.01.T01:CDS 25.0%
AAATCTTCAAGAACAAACCA+AGG + Chr3:76208834-76208853 None:intergenic 30.0%
AACTGATTATACAATCCTGT+TGG - Chr3:76209325-76209344 MsG0380015880.01.T01:CDS 30.0%
AATTGCATACTAACTTGATC+AGG + Chr3:76209029-76209048 None:intergenic 30.0%
ACCTTATATGTTACCAAAGA+GGG - Chr3:76209088-76209107 MsG0380015880.01.T01:CDS 30.0%
ATACAACAACGTGAAACTAA+GGG + Chr3:76208414-76208433 None:intergenic 30.0%
CTCAATTATAAAACACGCAT+CGG + Chr3:76208706-76208725 None:intergenic 30.0%
GAAATGGAGTTACAACAAAA+TGG - Chr3:76208315-76208334 MsG0380015880.01.T01:CDS 30.0%
GGGAATAATGATTAACACAT+TGG - Chr3:76209394-76209413 MsG0380015880.01.T01:CDS 30.0%
GTTGTTCAGGAAAATATCAA+TGG - Chr3:76209464-76209483 MsG0380015880.01.T01:CDS 30.0%
TATACAACAACGTGAAACTA+AGG + Chr3:76208415-76208434 None:intergenic 30.0%
TATCAATCAAGAAATCCAAC+AGG + Chr3:76209343-76209362 None:intergenic 30.0%
TTCTTAGAAAGGACTCATAA+GGG - Chr3:76208573-76208592 MsG0380015880.01.T01:CDS 30.0%
TTTCTTAGAAAGGACTCATA+AGG - Chr3:76208572-76208591 MsG0380015880.01.T01:CDS 30.0%
! TTGAGTTTTCGGATTTTTTG+AGG + Chr3:76208447-76208466 None:intergenic 30.0%
!! ATCATCACTAGTTTGTTCAA+TGG + Chr3:76208664-76208683 None:intergenic 30.0%
!! GTTGATAAACTTGTTGAGAA+GGG - Chr3:76209374-76209393 MsG0380015880.01.T01:CDS 30.0%
!! TAGAGAGTTGATAATTCACA+TGG - Chr3:76208362-76208381 MsG0380015880.01.T01:CDS 30.0%
!! TGTTGATAAACTTGTTGAGA+AGG - Chr3:76209373-76209392 MsG0380015880.01.T01:CDS 30.0%
!!! ATTTTAACTCAAGTGCACTT+TGG + Chr3:76209193-76209212 None:intergenic 30.0%
AAATGGACCAATGGAAACAA+TGG + Chr3:76208490-76208509 None:intergenic 35.0%
CACCTTATATGTTACCAAAG+AGG - Chr3:76209087-76209106 MsG0380015880.01.T01:CDS 35.0%
GATAACAAAGGATCTTCTTG+TGG + Chr3:76208753-76208772 None:intergenic 35.0%
GATAGCGCTCATGAAAATAA+TGG + Chr3:76208989-76209008 None:intergenic 35.0%
GGACCCTTCTCATAAATATA+AGG - Chr3:76209529-76209548 MsG0380015880.01.T01:CDS 35.0%
TACTTGAAAATCAGCTTCCT+TGG - Chr3:76208814-76208833 MsG0380015880.01.T01:CDS 35.0%
TCTTAGAAAGGACTCATAAG+GGG - Chr3:76208574-76208593 MsG0380015880.01.T01:CDS 35.0%
TCTTTGCCTTAATGTTGTTC+AGG - Chr3:76209451-76209470 MsG0380015880.01.T01:CDS 35.0%
! AACCATGGTTTGGATAACAA+AGG + Chr3:76208765-76208784 None:intergenic 35.0%
! ATCCTTTGTTATCCAAACCA+TGG - Chr3:76208760-76208779 MsG0380015880.01.T01:CDS 35.0%
! CTCTTTGGTAACATATAAGG+TGG + Chr3:76209089-76209108 None:intergenic 35.0%
! TCCCTCTTTGGTAACATATA+AGG + Chr3:76209092-76209111 None:intergenic 35.0%
! TTTGGTAATCTTGACCAACA+TGG + Chr3:76209175-76209194 None:intergenic 35.0%
!! ACTGTTTGTTTTTCCCTCTT+TGG + Chr3:76209104-76209123 None:intergenic 35.0%
ACTCCAACCATTGTTTCCAT+TGG - Chr3:76208480-76208499 MsG0380015880.01.T01:CDS 40.0%
CAAGATTCGAAGTTTGTCAC+TGG - Chr3:76209237-76209256 MsG0380015880.01.T01:CDS 40.0%
CAGTGACAAACTTCGAATCT+TGG + Chr3:76209239-76209258 None:intergenic 40.0%
CATTTCACTATGGAGACAAG+AGG - Chr3:76208505-76208524 MsG0380015880.01.T01:CDS 40.0%
CGATGGAAGATCTCAAATTG+AGG - Chr3:76208535-76208554 MsG0380015880.01.T01:CDS 40.0%
CTCTTGTCTCCATAGTGAAA+TGG + Chr3:76208507-76208526 None:intergenic 40.0%
GGAAACAATGGTTGGAGTAT+AGG + Chr3:76208478-76208497 None:intergenic 40.0%
TCCATAGTGAAATGGACCAA+TGG + Chr3:76208499-76208518 None:intergenic 40.0%
TCCATTGGTCCATTTCACTA+TGG - Chr3:76208495-76208514 MsG0380015880.01.T01:CDS 40.0%
TGTTATCCAAACCATGGTTG+AGG - Chr3:76208766-76208785 MsG0380015880.01.T01:CDS 40.0%
TTTGTTTAGTGCAAGCCAGT+TGG - Chr3:76209130-76209149 MsG0380015880.01.T01:CDS 40.0%
! AGGCTTCTTGGTTGAGTTTT+CGG + Chr3:76208458-76208477 None:intergenic 40.0%
!! TGAGACGCTTTTAAGGAATG+TGG - Chr3:76209262-76209281 MsG0380015880.01.T01:CDS 40.0%
AAGGGGTTAGGAGATTGCAT+TGG - Chr3:76208591-76208610 MsG0380015880.01.T01:CDS 45.0%
ACAGAACCTAGTTGCATCGA+TGG - Chr3:76208864-76208883 MsG0380015880.01.T01:CDS 45.0%
AGACAAGAGGTTAGAGTCGA+TGG - Chr3:76208518-76208537 MsG0380015880.01.T01:CDS 45.0%
ATCACACCTCAACCATGGTT+TGG + Chr3:76208775-76208794 None:intergenic 45.0%
ATGACTACTTCAGCACTCCT+TGG - Chr3:76209564-76209583 MsG0380015880.01.T01:CDS 45.0%
CATTCGGCAATATACTCTGC+AGG + Chr3:76208941-76208960 None:intergenic 45.0%
CGATGCAACTAGGTTCTGTT+AGG + Chr3:76208863-76208882 None:intergenic 45.0%
GAAAGGACTCATAAGGGGTT+AGG - Chr3:76208579-76208598 MsG0380015880.01.T01:CDS 45.0%
GCAGGTGTAAAACTCCATGT+TGG - Chr3:76209158-76209177 MsG0380015880.01.T01:CDS 45.0%
GGACCAATGGAAACAATGGT+TGG + Chr3:76208486-76208505 None:intergenic 45.0%
TGGTTGGAGTATAGGCTTCT+TGG + Chr3:76208470-76208489 None:intergenic 45.0%
TTACACCTGCTTCTACCAAC+TGG + Chr3:76209148-76209167 None:intergenic 45.0%
TTCACATCACACCTCAACCA+TGG + Chr3:76208780-76208799 None:intergenic 45.0%
! ACTGGACTGAGACGCTTTTA+AGG - Chr3:76209255-76209274 MsG0380015880.01.T01:CDS 45.0%
! ATTTTCTTCGGTCGCTTGAG+TGG - Chr3:76208727-76208746 MsG0380015880.01.T01:CDS 45.0%
ACCTCGCCATCGATGCAACT+AGG + Chr3:76208873-76208892 None:intergenic 55.0%
! ACCTAGTTGCATCGATGGCG+AGG - Chr3:76208869-76208888 MsG0380015880.01.T01:CDS 55.0%
!! GCAAGCCAGTTGGTAGAAGC+AGG - Chr3:76209140-76209159 MsG0380015880.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr3 gene 76208309 76209670 76208309 ID=MsG0380015880.01;Name=MsG0380015880.01
Chr3 mRNA 76208309 76209670 76208309 ID=MsG0380015880.01.T01;Parent=MsG0380015880.01;Name=MsG0380015880.01.T01;_AED=0.44;_eAED=0.44;_QI=0|-1|0|1|-1|1|1|0|453
Chr3 exon 76208309 76209670 76208309 ID=MsG0380015880.01.T01:exon:16470;Parent=MsG0380015880.01.T01
Chr3 CDS 76208309 76209670 76208309 ID=MsG0380015880.01.T01:cds;Parent=MsG0380015880.01.T01
Gene Sequence

>MsG0380015880.01.T01

ATGAAGGAAATGGAGTTACAACAAAATGGTTTCTTTCAAAGTGAAAATGAAAATAGAGAGTTGATAATTCACATGGAAAACATGTTAGAGAGTGTTGAACTTCCCTTAGTTTCACGTTGTTGTATATACAAAGTACCTCAAAAAATCCGAAAACTCAACCAAGAAGCCTATACTCCAACCATTGTTTCCATTGGTCCATTTCACTATGGAGACAAGAGGTTAGAGTCGATGGAAGATCTCAAATTGAGGTACCTCAAGAGTTTTTTCTTAGAAAGGACTCATAAGGGGTTAGGAGATTGCATTGGTTACATCAAAAAATCAGAAGAAATCATTAGATCTTGTTACTCAGAAGCCATTGAACAAACTAGTGATGATTTTGTTAAGATTATTTTAACCGATGCGTGTTTTATAATTGAGTATTTTCTTCGGTCGCTTGAGTGGCCACAAGAAGATCCTTTGTTATCCAAACCATGGTTGAGGTGTGATGTGAAGCTTGATCTCATATTACTTGAAAATCAGCTTCCTTGGTTTGTTCTTGAAGATTTGTTCAACCTAACAGAACCTAGTTGCATCGATGGCGAGGTTTCTTCGTTTTTCGATGTTGCTTTTCATTATTTTAAGGTTCATTTCCTGCAGAGTATATTGCCGAATGAAACAAATAACAAGAACTTCACTATCCATTATTTTCATGAGCGCTATCAACAATATATAATGAAACCTGATCAAGTTAGTATGCAATTACATAATCTCACTGATCTGTTAAGAGTATTTTACTTGCCACCTTATATGTTACCAAAGAGGGAAAAACAAACAGTGAAGCATTTGTTTAGTGCAAGCCAGTTGGTAGAAGCAGGTGTAAAACTCCATGTTGGTCAAGATTACCAAAGTGCACTTGAGTTAAAATTTGCAAAGGGCGCGCTTACGATACCAAGATTCGAAGTTTGTCACTGGACTGAGACGCTTTTAAGGAATGTGGTTGCGTTCGAGCAATGTCATTATCCGTTTCAGACTTATATAACTGATTATACAATCCTGTTGGATTTCTTGATTGATACAAGTCAAGATGTTGATAAACTTGTTGAGAAGGGAATAATGATTAACACATTGGGTGATAGCACTGCAGTTGCTAAAATGATTAACAATCTTTGCCTTAATGTTGTTCAGGAAAATATCAATGGCAGTTATATTTCGCTATGCAGAAAATTGAATTGCTTCTATGAGGACCCTTCTCATAAATATAAGGCAATCTTCATACATGACTACTTCAGCACTCCTTGGAAAATAACATCTTTTGTAGCTGCAATTGTGCTATTATTGCTTACTCTAATTCAAGCTACATGTTCTATTATCTCATTATTTTAG
Protein sequence

>MsG0380015880.01.T01

MKEMELQQNGFFQSENENRELIIHMENMLESVELPLVSRCCIYKVPQKIRKLNQEAYTPTIVSIGPFHYGDKRLESMEDLKLRYLKSFFLERTHKGLGDCIGYIKKSEEIIRSCYSEAIEQTSDDFVKIILTDACFIIEYFLRSLEWPQEDPLLSKPWLRCDVKLDLILLENQLPWFVLEDLFNLTEPSCIDGEVSSFFDVAFHYFKVHFLQSILPNETNNKNFTIHYFHERYQQYIMKPDQVSMQLHNLTDLLRVFYLPPYMLPKREKQTVKHLFSASQLVEAGVKLHVGQDYQSALELKFAKGALTIPRFEVCHWTETLLRNVVAFEQCHYPFQTYITDYTILLDFLIDTSQDVDKLVEKGIMINTLGDSTAVAKMINNLCLNVVQENINGSYISLCRKLNCFYEDPSHKYKAIFIHDYFSTPWKITSFVAAIVLLLLTLIQATCSIISLF*