AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015975.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015975.01.T01 MTR_3g080850 98.194 443 8 0 1 443 1 443 0.0 895
MsG0380015975.01.T01 MTR_1g077890 74.718 443 110 2 1 441 1 443 0.0 662
MsG0380015975.01.T01 MTR_6g012730 30.357 336 219 7 92 423 138 462 1.68e-41 154
MsG0380015975.01.T01 MTR_7g011230 29.730 333 219 7 92 420 196 517 2.34e-38 146
MsG0380015975.01.T01 MTR_1g064320 29.581 382 230 13 48 420 96 447 1.00e-35 137
MsG0380015975.01.T01 MTR_1g064320 29.581 382 230 13 48 420 97 448 1.12e-35 137
MsG0380015975.01.T01 MTR_6g012730 28.783 337 203 8 92 423 138 442 7.53e-33 129
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015975.01.T01 AT1G64660 74.876 402 100 1 39 439 40 441 0.0 628
MsG0380015975.01.T01 AT3G01120 34.132 334 203 8 92 420 224 545 1.27e-50 180
MsG0380015975.01.T01 AT1G33320 30.655 336 215 9 90 420 33 355 8.92e-42 152
MsG0380015975.01.T01 AT1G33320 30.655 336 215 9 90 420 72 394 1.93e-41 152
MsG0380015975.01.T01 AT1G33320 29.907 321 207 9 105 420 3 310 4.72e-36 135
MsG0380015975.01.T01 AT3G57050 29.032 403 246 14 46 439 13 384 5.90e-35 134
MsG0380015975.01.T01 AT3G57050 29.032 403 246 14 46 439 35 406 9.08e-35 134
MsG0380015975.01.T01 AT3G57050 29.032 403 246 14 46 439 76 447 1.99e-34 134
MsG0380015975.01.T01 AT3G57050 29.032 403 246 14 46 439 91 462 2.40e-34 134
MsG0380015975.01.T01 AT3G57050 31.613 310 175 12 46 341 91 377 4.38e-30 120

Find 123 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGCTTCTAATACTCTTTA+TGG 0.133950 3:-77404394 MsG0380015975.01.T01:CDS
TTGCAAAACTATGCTCATTT+TGG 0.190448 3:-77403036 MsG0380015975.01.T01:CDS
GCCAATGCCCGCCATGAATT+TGG 0.195339 3:-77404682 MsG0380015975.01.T01:CDS
GACAGTTCAAATGCTACCTT+TGG 0.325926 3:+77403285 None:intergenic
GCATTGGCGAGTGCGGCCTC+TGG 0.329540 3:+77404697 None:intergenic
GCTACCTTTGGGTTCATTGT+TGG 0.369052 3:+77403297 None:intergenic
GGCTGTACAATAGGCGGCCT+CGG 0.370564 3:+77404477 None:intergenic
GAGGAGGAACAGAAACTTGC+TGG 0.376846 3:-77402937 MsG0380015975.01.T01:CDS
GGCTGAGATTGAGGACGGTT+GGG 0.382101 3:+77404524 None:intergenic
GGTGGTGGTGACATTATTGC+AGG 0.382112 3:-77404070 MsG0380015975.01.T01:intron
ACTACCAGAGCAAGACATTA+GGG 0.386384 3:+77402981 None:intergenic
CATGCCACTGGCTGTACAAT+AGG 0.389277 3:+77404468 None:intergenic
CACCATGTTCGCCAAATTCA+TGG 0.395995 3:+77404671 None:intergenic
CATTGGCGAGTGCGGCCTCT+GGG 0.403366 3:+77404698 None:intergenic
CGGCTGAGATTGAGGACGGT+TGG 0.412741 3:+77404523 None:intergenic
GCCAAATTCATGGCGGGCAT+TGG 0.417529 3:+77404681 None:intergenic
CTCGAAAACCTTGTTGTTGA+GGG 0.418479 3:-77404772 MsG0380015975.01.T01:CDS
ACTCTCCGCAAAATATTTGC+TGG 0.420553 3:-77404595 MsG0380015975.01.T01:CDS
GGCAACAAAAGTTATGGTTA+TGG 0.429995 3:-77403117 MsG0380015975.01.T01:CDS
TACTACCAGAGCAAGACATT+AGG 0.431550 3:+77402980 None:intergenic
CTGCTTTCTCCTGCTCGTCT+TGG 0.446270 3:-77404133 MsG0380015975.01.T01:CDS
CGCCATGAATTTGGCGAACA+TGG 0.446911 3:-77404673 MsG0380015975.01.T01:CDS
AAAATATTTGCTGGAGAGCT+TGG 0.450787 3:-77404586 MsG0380015975.01.T01:CDS
CTTCGAGGGCCGCCATCTTA+CGG 0.450790 3:+77404503 None:intergenic
CAAATACTCCTGAGCTAGCT+AGG 0.456437 3:-77404210 MsG0380015975.01.T01:CDS
ATTCTCAACTGCTTCCAAAT+CGG 0.458070 3:+77404300 None:intergenic
ATGAATTTGGCGAACATGGT+GGG 0.464837 3:-77404669 MsG0380015975.01.T01:CDS
TCAAGGAGCCATGATGCTGC+TGG 0.465864 3:-77403322 MsG0380015975.01.T01:CDS
AGGCGGCCTCGGTGCCTTCG+AGG 0.465951 3:+77404488 None:intergenic
TCCATAGGCAACAAAAGTTA+TGG 0.473714 3:-77403123 MsG0380015975.01.T01:CDS
TGGGATTCTTTGTGTTGACA+TGG 0.474228 3:-77403094 MsG0380015975.01.T01:CDS
AGAAATGCTGCAAGAGTGCA+TGG 0.496586 3:+77404365 None:intergenic
GGGATTCTTTGTGTTGACAT+GGG 0.496704 3:-77403093 MsG0380015975.01.T01:CDS
GGACTCAATGTGATCTATCC+TGG 0.499685 3:-77403180 MsG0380015975.01.T01:CDS
CCATCTTACGGCTGAGATTG+AGG 0.506032 3:+77404515 None:intergenic
CAAGGAGCCATGATGCTGCT+GGG 0.506322 3:-77403321 MsG0380015975.01.T01:CDS
GTATTTGCCACATTCAAGCT+TGG 0.509683 3:+77404226 None:intergenic
CCTCAATCTCAGCCGTAAGA+TGG 0.509888 3:-77404515 MsG0380015975.01.T01:CDS
GCTTCTAATACTCTTTATGG+TGG 0.511265 3:-77404391 MsG0380015975.01.T01:CDS
CAGCCACGGCGGACATATTG+TGG 0.513663 3:-77404413 MsG0380015975.01.T01:CDS
GTCAGAGAGAATCCCACACC+TGG 0.515259 3:-77403265 MsG0380015975.01.T01:CDS
CGTGCAATCCTAGCTAGCTC+AGG 0.515563 3:+77404202 None:intergenic
ACTGACATCCTCACCATCCC+TGG 0.518257 3:+77402907 None:intergenic
AACGCATTGATGGGAATTCA+AGG 0.519505 3:-77403339 MsG0380015975.01.T01:CDS
ACAGTTCAAATGCTACCTTT+GGG 0.519702 3:+77403286 None:intergenic
GGCGGCCTCGGTGCCTTCGA+GGG 0.521473 3:+77404489 None:intergenic
CATGCTGTGGATGATCTTCA+AGG 0.523751 3:+77403157 None:intergenic
CCTCGAAAACCTTGTTGTTG+AGG 0.524182 3:-77404773 MsG0380015975.01.T01:CDS
GACTGTGTTCTTTCATGCGA+AGG 0.524215 3:+77403241 None:intergenic
CTGTTACAGCTCAGCAGCCA+CGG 0.525836 3:-77404427 MsG0380015975.01.T01:CDS
CTTCTAATACTCTTTATGGT+GGG 0.526302 3:-77404390 MsG0380015975.01.T01:CDS
GCTGGAGAGCTTGGTCATGA+AGG 0.528198 3:-77404577 MsG0380015975.01.T01:CDS
TGTTGGCCCCAGCAGCATCA+TGG 0.530505 3:+77403314 None:intergenic
GGATTCTTTGTGTTGACATG+GGG 0.532362 3:-77403092 MsG0380015975.01.T01:CDS
AACAAAAGTTATGGTTATGG+TGG 0.536628 3:-77403114 MsG0380015975.01.T01:CDS
GGAGCAGAAGTGGAGTCAGC+TGG 0.536681 3:-77402866 MsG0380015975.01.T01:CDS
TGACTCAAAATACAGCACTT+TGG 0.536801 3:+77404258 None:intergenic
CGTCTTTGCCCTCAACAACA+AGG 0.541523 3:+77404764 None:intergenic
ATCTCTAAGTTTATCAGTGG+TGG 0.542218 3:-77404088 MsG0380015975.01.T01:CDS
TCTAAGTTTATCAGTGGTGG+TGG 0.543204 3:-77404085 MsG0380015975.01.T01:CDS
TCATGCGAAGGCCCAGGTGT+GGG 0.543259 3:+77403253 None:intergenic
GAAACCCTAATGTCTTGCTC+TGG 0.544821 3:-77402985 MsG0380015975.01.T01:CDS
CGAGCAGGAGAAAGCAGCAT+AGG 0.546115 3:+77404139 None:intergenic
ATGTTCGCCAAATTCATGGC+GGG 0.548060 3:+77404675 None:intergenic
TTGGAACATTGGAGCAGAAG+TGG 0.548304 3:-77402876 MsG0380015975.01.T01:CDS
CTCTGCCACCTTCACCGTCA+TGG 0.548584 3:-77404626 MsG0380015975.01.T01:CDS
CGTAAGATGGCGGCCCTCGA+AGG 0.549334 3:-77404502 MsG0380015975.01.T01:CDS
GTTCTTTCATGCGAAGGCCC+AGG 0.550181 3:+77403247 None:intergenic
AGAAAGCAGCATAGGAGCAA+AGG 0.550769 3:+77404147 None:intergenic
AGTTGGATACATTGGAACAT+TGG 0.552093 3:-77402887 MsG0380015975.01.T01:CDS
AGAAATAGCGGACATGCCAC+TGG 0.552652 3:+77404456 None:intergenic
AGAACACAGTCATCGTGCAT+TGG 0.554112 3:-77403229 MsG0380015975.01.T01:CDS
ACATCTGCACCAAGACGAGC+AGG 0.554578 3:+77404124 None:intergenic
CACAAGTAGTGAGCTGAATG+AGG 0.555659 3:-77402956 MsG0380015975.01.T01:CDS
CATGACGGTGAAGGTGGCAG+AGG 0.555789 3:+77404627 None:intergenic
TGCTCGTCTTGGTGCAGATG+TGG 0.556305 3:-77404122 MsG0380015975.01.T01:CDS
TGTGGATGATCTTCAAGGCC+AGG 0.556561 3:+77403162 None:intergenic
ACAAAAGTTATGGTTATGGT+GGG 0.556650 3:-77403113 MsG0380015975.01.T01:CDS
TGAATTTGGCGAACATGGTG+GGG 0.557188 3:-77404668 MsG0380015975.01.T01:CDS
AAACTTGCTGGGATTACACC+AGG 0.558665 3:-77402925 MsG0380015975.01.T01:CDS
TTCATGCGAAGGCCCAGGTG+TGG 0.560694 3:+77403252 None:intergenic
AGAATACATGGCGGATACGT+TGG 0.562710 3:-77404827 None:intergenic
AGGATGTCAGTTGGATACAT+TGG 0.562882 3:-77402895 MsG0380015975.01.T01:CDS
GTTGAGAATGCAATTGTGGA+AGG 0.566748 3:-77404286 MsG0380015975.01.T01:CDS
ATGGCGGGCATTGGCGAGTG+CGG 0.568985 3:+77404690 None:intergenic
CATGAATTTGGCGAACATGG+TGG 0.571402 3:-77404670 MsG0380015975.01.T01:CDS
GGACGGTTGGGTTGAAATGA+CGG 0.578007 3:+77404536 None:intergenic
TCTTGCAGCATTTCTTTGTG+AGG 0.579069 3:-77404357 MsG0380015975.01.T01:CDS
ATCTGGTTCCATGACGGTGA+AGG 0.580223 3:+77404618 None:intergenic
TGGGGTTAACATGTCGATTG+AGG 0.586048 3:-77404650 MsG0380015975.01.T01:CDS
TGCTGGGATTACACCAGGGA+TGG 0.593726 3:-77402920 MsG0380015975.01.T01:CDS
GGATATGTCAACAAAAGTTG+TGG 0.595732 3:+77404321 None:intergenic
TGCAAATCCAAGCTTGAATG+TGG 0.596227 3:-77404233 MsG0380015975.01.T01:CDS
TGGTTCCATGACGGTGAAGG+TGG 0.602134 3:+77404621 None:intergenic
AAGGAGCCATGATGCTGCTG+GGG 0.605331 3:-77403320 MsG0380015975.01.T01:CDS
GGATTACACCAGGGATGGTG+AGG 0.605740 3:-77402915 MsG0380015975.01.T01:CDS
AGGAGGAACAGAAACTTGCT+GGG 0.605841 3:-77402936 MsG0380015975.01.T01:CDS
GCCGCCTATTGTACAGCCAG+TGG 0.608219 3:-77404472 MsG0380015975.01.T01:CDS
AGCAGTTGAGAATGCAATTG+TGG 0.608406 3:-77404290 MsG0380015975.01.T01:CDS
CATGAACTATTGAAATCCAT+AGG 0.612583 3:-77403138 MsG0380015975.01.T01:CDS
CTTACGGCTGAGATTGAGGA+CGG 0.623850 3:+77404519 None:intergenic
TTGTGTTGACATGGGGACAG+TGG 0.626253 3:-77403085 MsG0380015975.01.T01:CDS
GGGATGGTGAGGATGTCAGT+TGG 0.628293 3:-77402904 MsG0380015975.01.T01:CDS
GAGAGTATCTGGTTCCATGA+CGG 0.637077 3:+77404612 None:intergenic
AGTATCTCTAAGTTTATCAG+TGG 0.640242 3:-77404091 MsG0380015975.01.T01:CDS
GATTTCAATAGTTCATGCTG+TGG 0.640950 3:+77403144 None:intergenic
TAACAGAACTGCAGAAATAG+CGG 0.644901 3:+77404444 None:intergenic
TTGAGAATGCAATTGTGGAA+GGG 0.645173 3:-77404285 MsG0380015975.01.T01:CDS
GGCGGCCCTCGAAGGCACCG+AGG 0.659707 3:-77404494 MsG0380015975.01.T01:CDS
AAAATGACAGGAGCTGTGTG+TGG 0.660955 3:-77403378 MsG0380015975.01.T01:intron
CAATCTCAGCCGTAAGATGG+CGG 0.663207 3:-77404512 MsG0380015975.01.T01:CDS
GAAATGCTGCAAGAGTGCAT+GGG 0.674218 3:+77404366 None:intergenic
AAGTAGTGAGCTGAATGAGG+AGG 0.679239 3:-77402953 MsG0380015975.01.T01:CDS
GGGGCCAACAATGAACCCAA+AGG 0.683668 3:-77403301 MsG0380015975.01.T01:CDS
AAACTGACAAAATTCAATGG+CGG 0.687533 3:-77404736 MsG0380015975.01.T01:CDS
TCAGAGAGAATCCCACACCT+GGG 0.688572 3:-77403264 MsG0380015975.01.T01:CDS
GCCACTGGCTGTACAATAGG+CGG 0.689799 3:+77404471 None:intergenic
AGAATCTGACGTAGACCCAG+AGG 0.698857 3:-77404713 MsG0380015975.01.T01:CDS
AAGCCACAATATGTCCGCCG+TGG 0.698957 3:+77404410 None:intergenic
AACTTGCTGGGATTACACCA+GGG 0.702488 3:-77402924 MsG0380015975.01.T01:CDS
AAATGACAGGAGCTGTGTGT+GGG 0.705210 3:-77403377 MsG0380015975.01.T01:intron
CATGTTCGCCAAATTCATGG+CGG 0.725851 3:+77404674 None:intergenic
TTACAGCTCAGCAGCCACGG+CGG 0.762872 3:-77404424 MsG0380015975.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAATAATATATTTTAAACAA+AGG + Chr3:77403724-77403743 None:intergenic 10.0%
!!! TCAAAATAACTTTTTTTTTA+AGG + Chr3:77404159-77404178 None:intergenic 10.0%
!! AATTCTTTAATAATAAAGAC+CGG + Chr3:77403884-77403903 None:intergenic 15.0%
!!! AATTAATTTTAAAATGTCTC+CGG - Chr3:77403862-77403881 MsG0380015975.01.T01:intron 15.0%
!!! ATATATTTTAAACAAAGGAA+AGG + Chr3:77403719-77403738 None:intergenic 15.0%
!! AAAAAACTGACAAAATTCAA+TGG - Chr3:77402912-77402931 MsG0380015975.01.T01:CDS 20.0%
!! ATAGAGTAATATTAATAACG+TGG - Chr3:77404007-77404026 MsG0380015975.01.T01:intron 20.0%
!! CTTTCAAAGAAAAAAATTGT+TGG + Chr3:77403753-77403772 None:intergenic 20.0%
!! TCATAAAACTATACAATGTA+CGG + Chr3:77403810-77403829 None:intergenic 20.0%
!!! ATTGAATTTTGTCAGTTTTT+TGG + Chr3:77402913-77402932 None:intergenic 20.0%
! ATTCAACTATTTGCCTAATA+TGG + Chr3:77403668-77403687 None:intergenic 25.0%
! CACTCAAACAAATATAATGT+TGG + Chr3:77403784-77403803 None:intergenic 25.0%
! GCAAAATAGTAGATTTCTAT+TGG - Chr3:77404029-77404048 MsG0380015975.01.T01:intron 25.0%
!! AGTTTGGTAATTCATAATAG+CGG + Chr3:77403636-77403655 None:intergenic 25.0%
!!! TCAAACTCACGTTTTTTTAA+AGG + Chr3:77404186-77404205 None:intergenic 25.0%
AAACTGACAAAATTCAATGG+CGG - Chr3:77402915-77402934 MsG0380015975.01.T01:CDS 30.0%
AACAAAAGTTATGGTTATGG+TGG - Chr3:77404537-77404556 MsG0380015975.01.T01:CDS 30.0%
AATATGGCGAAACAAAAGTT+TGG + Chr3:77403652-77403671 None:intergenic 30.0%
ACAAAAGTTATGGTTATGGT+GGG - Chr3:77404538-77404557 MsG0380015975.01.T01:CDS 30.0%
AGTATCTCTAAGTTTATCAG+TGG - Chr3:77403560-77403579 MsG0380015975.01.T01:intron 30.0%
CATGAACTATTGAAATCCAT+AGG - Chr3:77404513-77404532 MsG0380015975.01.T01:CDS 30.0%
CTTCTAATACTCTTTATGGT+GGG - Chr3:77403261-77403280 MsG0380015975.01.T01:CDS 30.0%
! TTGCAAAACTATGCTCATTT+TGG - Chr3:77404615-77404634 MsG0380015975.01.T01:CDS 30.0%
! TTTGAAACCTTGAAAATGAC+AGG - Chr3:77404261-77404280 MsG0380015975.01.T01:CDS 30.0%
! TTTTGTTGACATATCCGATT+TGG - Chr3:77403337-77403356 MsG0380015975.01.T01:CDS 30.0%
!! AACTTTTGTTTCGCCATATT+AGG - Chr3:77403652-77403671 MsG0380015975.01.T01:intron 30.0%
!! GTTTTATGGCTGTTAGTTTA+GGG - Chr3:77404637-77404656 MsG0380015975.01.T01:CDS 30.0%
!!! CTATGCTCATTTTGGTTTTA+TGG - Chr3:77404623-77404642 MsG0380015975.01.T01:CDS 30.0%
!!! GTTGTACACTTTATTTTGAG+AGG + Chr3:77404236-77404255 None:intergenic 30.0%
ACAGTTCAAATGCTACCTTT+GGG + Chr3:77404368-77404387 None:intergenic 35.0%
AGTTGGATACATTGGAACAT+TGG - Chr3:77404764-77404783 MsG0380015975.01.T01:CDS 35.0%
ATCTCTAAGTTTATCAGTGG+TGG - Chr3:77403563-77403582 MsG0380015975.01.T01:intron 35.0%
ATTCTCAACTGCTTCCAAAT+CGG + Chr3:77403354-77403373 None:intergenic 35.0%
GATTTCAATAGTTCATGCTG+TGG + Chr3:77404510-77404529 None:intergenic 35.0%
GCAACCAGACTCAAAAAATT+AGG - Chr3:77404450-77404469 MsG0380015975.01.T01:CDS 35.0%
GCTTCTAATACTCTTTATGG+TGG - Chr3:77403260-77403279 MsG0380015975.01.T01:CDS 35.0%
GGATATGTCAACAAAAGTTG+TGG + Chr3:77403333-77403352 None:intergenic 35.0%
GGCAACAAAAGTTATGGTTA+TGG - Chr3:77404534-77404553 MsG0380015975.01.T01:CDS 35.0%
GTGGCTTCTAATACTCTTTA+TGG - Chr3:77403257-77403276 MsG0380015975.01.T01:CDS 35.0%
TAACAGAACTGCAGAAATAG+CGG + Chr3:77403210-77403229 None:intergenic 35.0%
TCCATAGGCAACAAAAGTTA+TGG - Chr3:77404528-77404547 MsG0380015975.01.T01:CDS 35.0%
TGACTCAAAATACAGCACTT+TGG + Chr3:77403396-77403415 None:intergenic 35.0%
TTGAGAATGCAATTGTGGAA+GGG - Chr3:77403366-77403385 MsG0380015975.01.T01:CDS 35.0%
! AAAATATTTGCTGGAGAGCT+TGG - Chr3:77403065-77403084 MsG0380015975.01.T01:CDS 35.0%
! ACCATAACTTTTGTTGCCTA+TGG + Chr3:77404532-77404551 None:intergenic 35.0%
!! AAGTTTTGTGAACGCATTGA+TGG - Chr3:77404302-77404321 MsG0380015975.01.T01:CDS 35.0%
!! AGTTTTGTGAACGCATTGAT+GGG - Chr3:77404303-77404322 MsG0380015975.01.T01:CDS 35.0%
!! GGTTTTATGGCTGTTAGTTT+AGG - Chr3:77404636-77404655 MsG0380015975.01.T01:CDS 35.0%
!!! AATATTTTGCGGAGAGTATC+TGG + Chr3:77403053-77403072 None:intergenic 35.0%
!!! GAGTCCTAATTTTTTGAGTC+TGG + Chr3:77404457-77404476 None:intergenic 35.0%
ACTACCAGAGCAAGACATTA+GGG + Chr3:77404673-77404692 None:intergenic 40.0%
ACTCTCCGCAAAATATTTGC+TGG - Chr3:77403056-77403075 MsG0380015975.01.T01:CDS 40.0%
AGCAGTTGAGAATGCAATTG+TGG - Chr3:77403361-77403380 MsG0380015975.01.T01:CDS 40.0%
AGCGGTCACAATTATGTGAA+AGG + Chr3:77403618-77403637 None:intergenic 40.0%
AGGATGTCAGTTGGATACAT+TGG - Chr3:77404756-77404775 MsG0380015975.01.T01:CDS 40.0%
ATGAATTTGGCGAACATGGT+GGG - Chr3:77402982-77403001 MsG0380015975.01.T01:CDS 40.0%
GACAGTTCAAATGCTACCTT+TGG + Chr3:77404369-77404388 None:intergenic 40.0%
GTATTTGCCACATTCAAGCT+TGG + Chr3:77403428-77403447 None:intergenic 40.0%
GTTGAGAATGCAATTGTGGA+AGG - Chr3:77403365-77403384 MsG0380015975.01.T01:CDS 40.0%
TACTACCAGAGCAAGACATT+AGG + Chr3:77404674-77404693 None:intergenic 40.0%
TCTAAGTTTATCAGTGGTGG+TGG - Chr3:77403566-77403585 MsG0380015975.01.T01:intron 40.0%
TCTTGCAGCATTTCTTTGTG+AGG - Chr3:77403294-77403313 MsG0380015975.01.T01:CDS 40.0%
TGCAAATCCAAGCTTGAATG+TGG - Chr3:77403418-77403437 MsG0380015975.01.T01:intron 40.0%
! AACGCATTGATGGGAATTCA+AGG - Chr3:77404312-77404331 MsG0380015975.01.T01:CDS 40.0%
! GCTCTCCAGCAAATATTTTG+CGG + Chr3:77403064-77403083 None:intergenic 40.0%
! GGATTCTTTGTGTTGACATG+GGG - Chr3:77404559-77404578 MsG0380015975.01.T01:CDS 40.0%
! GGGATTCTTTGTGTTGACAT+GGG - Chr3:77404558-77404577 MsG0380015975.01.T01:CDS 40.0%
! TGGGATTCTTTGTGTTGACA+TGG - Chr3:77404557-77404576 MsG0380015975.01.T01:CDS 40.0%
!! CTCGAAAACCTTGTTGTTGA+GGG - Chr3:77402879-77402898 MsG0380015975.01.T01:CDS 40.0%
AAAATGACAGGAGCTGTGTG+TGG - Chr3:77404273-77404292 MsG0380015975.01.T01:CDS 45.0%
AAATGACAGGAGCTGTGTGT+GGG - Chr3:77404274-77404293 MsG0380015975.01.T01:CDS 45.0%
AAGTAGTGAGCTGAATGAGG+AGG - Chr3:77404698-77404717 MsG0380015975.01.T01:CDS 45.0%
ACGCAAAAAAGGAGTGACTG+TGG - Chr3:77403469-77403488 MsG0380015975.01.T01:intron 45.0%
AGAAAGCAGCATAGGAGCAA+AGG + Chr3:77403507-77403526 None:intergenic 45.0%
AGAACACAGTCATCGTGCAT+TGG - Chr3:77404422-77404441 MsG0380015975.01.T01:CDS 45.0%
ATGTTCGCCAAATTCATGGC+GGG + Chr3:77402979-77402998 None:intergenic 45.0%
CAAAAAAGGAGTGACTGTGG+TGG - Chr3:77403472-77403491 MsG0380015975.01.T01:intron 45.0%
CAAATACTCCTGAGCTAGCT+AGG - Chr3:77403441-77403460 MsG0380015975.01.T01:intron 45.0%
CACAAGTAGTGAGCTGAATG+AGG - Chr3:77404695-77404714 MsG0380015975.01.T01:CDS 45.0%
CACCATGTTCGCCAAATTCA+TGG + Chr3:77402983-77403002 None:intergenic 45.0%
CATGAATTTGGCGAACATGG+TGG - Chr3:77402981-77403000 MsG0380015975.01.T01:CDS 45.0%
CATGCTGTGGATGATCTTCA+AGG + Chr3:77404497-77404516 None:intergenic 45.0%
CATGTTCGCCAAATTCATGG+CGG + Chr3:77402980-77402999 None:intergenic 45.0%
GAAACCCTAATGTCTTGCTC+TGG - Chr3:77404666-77404685 MsG0380015975.01.T01:CDS 45.0%
GACTGTGTTCTTTCATGCGA+AGG + Chr3:77404413-77404432 None:intergenic 45.0%
GCTAGGATTGCACGCAAAAA+AGG - Chr3:77403458-77403477 MsG0380015975.01.T01:intron 45.0%
GGACTCAATGTGATCTATCC+TGG - Chr3:77404471-77404490 MsG0380015975.01.T01:CDS 45.0%
TGAATTTGGCGAACATGGTG+GGG - Chr3:77402983-77403002 MsG0380015975.01.T01:CDS 45.0%
TTGGAACATTGGAGCAGAAG+TGG - Chr3:77404775-77404794 MsG0380015975.01.T01:CDS 45.0%
! AGAAATGCTGCAAGAGTGCA+TGG + Chr3:77403289-77403308 None:intergenic 45.0%
! AGGAGGAACAGAAACTTGCT+GGG - Chr3:77404715-77404734 MsG0380015975.01.T01:CDS 45.0%
! CCTCAACAACAAGGTTTTCG+AGG + Chr3:77402881-77402900 None:intergenic 45.0%
! GAAATGCTGCAAGAGTGCAT+GGG + Chr3:77403288-77403307 None:intergenic 45.0%
! GCTACCTTTGGGTTCATTGT+TGG + Chr3:77404357-77404376 None:intergenic 45.0%
! TGGGGTTAACATGTCGATTG+AGG - Chr3:77403001-77403020 MsG0380015975.01.T01:CDS 45.0%
!! AAACTTGCTGGGATTACACC+AGG - Chr3:77404726-77404745 MsG0380015975.01.T01:CDS 45.0%
!! AACTTGCTGGGATTACACCA+GGG - Chr3:77404727-77404746 MsG0380015975.01.T01:CDS 45.0%
!! CCTCGAAAACCTTGTTGTTG+AGG - Chr3:77402878-77402897 MsG0380015975.01.T01:CDS 45.0%
!! GAGAGTATCTGGTTCCATGA+CGG + Chr3:77403042-77403061 None:intergenic 45.0%
!!! CACAGCTCCTGTCATTTTCA+AGG + Chr3:77404271-77404290 None:intergenic 45.0%
!! TTAAAATTAATTATATGATT+TGG + Chr3:77403854-77403873 None:intergenic 5.0%
AGAATCTGACGTAGACCCAG+AGG - Chr3:77402938-77402957 MsG0380015975.01.T01:CDS 50.0%
CAATCTCAGCCGTAAGATGG+CGG - Chr3:77403139-77403158 MsG0380015975.01.T01:CDS 50.0%
CCATCTTACGGCTGAGATTG+AGG + Chr3:77403139-77403158 None:intergenic 50.0%
CCTCAATCTCAGCCGTAAGA+TGG - Chr3:77403136-77403155 MsG0380015975.01.T01:CDS 50.0%
CGCCATGAATTTGGCGAACA+TGG - Chr3:77402978-77402997 MsG0380015975.01.T01:CDS 50.0%
CGTCTTTGCCCTCAACAACA+AGG + Chr3:77402890-77402909 None:intergenic 50.0%
CTTACGGCTGAGATTGAGGA+CGG + Chr3:77403135-77403154 None:intergenic 50.0%
GAGGAGGAACAGAAACTTGC+TGG - Chr3:77404714-77404733 MsG0380015975.01.T01:CDS 50.0%
TCAGAGAGAATCCCACACCT+GGG - Chr3:77404387-77404406 MsG0380015975.01.T01:CDS 50.0%
TGTGGATGATCTTCAAGGCC+AGG + Chr3:77404492-77404511 None:intergenic 50.0%
! ATCTGGTTCCATGACGGTGA+AGG + Chr3:77403036-77403055 None:intergenic 50.0%
! CATGCCACTGGCTGTACAAT+AGG + Chr3:77403186-77403205 None:intergenic 50.0%
! GGTGGTGGTGACATTATTGC+AGG - Chr3:77403581-77403600 MsG0380015975.01.T01:intron 50.0%
! TTGTGTTGACATGGGGACAG+TGG - Chr3:77404566-77404585 MsG0380015975.01.T01:CDS 50.0%
!! AGAAATAGCGGACATGCCAC+TGG + Chr3:77403198-77403217 None:intergenic 50.0%
!! GGACGGTTGGGTTGAAATGA+CGG + Chr3:77403118-77403137 None:intergenic 50.0%
AAGCCACAATATGTCCGCCG+TGG + Chr3:77403244-77403263 None:intergenic 55.0%
AAGGAGCCATGATGCTGCTG+GGG - Chr3:77404331-77404350 MsG0380015975.01.T01:CDS 55.0%
ACATCTGCACCAAGACGAGC+AGG + Chr3:77403530-77403549 None:intergenic 55.0%
ACTGACATCCTCACCATCCC+TGG + Chr3:77404747-77404766 None:intergenic 55.0%
CAAGGAGCCATGATGCTGCT+GGG - Chr3:77404330-77404349 MsG0380015975.01.T01:CDS 55.0%
CGAGCAGGAGAAAGCAGCAT+AGG + Chr3:77403515-77403534 None:intergenic 55.0%
CGTGCAATCCTAGCTAGCTC+AGG + Chr3:77403452-77403471 None:intergenic 55.0%
CTGCTTTCTCCTGCTCGTCT+TGG - Chr3:77403518-77403537 MsG0380015975.01.T01:intron 55.0%
CTGTTACAGCTCAGCAGCCA+CGG - Chr3:77403224-77403243 MsG0380015975.01.T01:CDS 55.0%
GCCAATGCCCGCCATGAATT+TGG - Chr3:77402969-77402988 MsG0380015975.01.T01:CDS 55.0%
GCTGGAGAGCTTGGTCATGA+AGG - Chr3:77403074-77403093 MsG0380015975.01.T01:CDS 55.0%
GGATTACACCAGGGATGGTG+AGG - Chr3:77404736-77404755 MsG0380015975.01.T01:CDS 55.0%
GGCTGAGATTGAGGACGGTT+GGG + Chr3:77403130-77403149 None:intergenic 55.0%
GGGATGGTGAGGATGTCAGT+TGG - Chr3:77404747-77404766 MsG0380015975.01.T01:CDS 55.0%
GGGGCCAACAATGAACCCAA+AGG - Chr3:77404350-77404369 MsG0380015975.01.T01:CDS 55.0%
GTCAGAGAGAATCCCACACC+TGG - Chr3:77404386-77404405 MsG0380015975.01.T01:CDS 55.0%
GTTCTTTCATGCGAAGGCCC+AGG + Chr3:77404407-77404426 None:intergenic 55.0%
TCAAGGAGCCATGATGCTGC+TGG - Chr3:77404329-77404348 MsG0380015975.01.T01:CDS 55.0%
TGCTGGGATTACACCAGGGA+TGG - Chr3:77404731-77404750 MsG0380015975.01.T01:CDS 55.0%
TGGTTCCATGACGGTGAAGG+TGG + Chr3:77403033-77403052 None:intergenic 55.0%
! GCCACTGGCTGTACAATAGG+CGG + Chr3:77403183-77403202 None:intergenic 55.0%
! TGCTCGTCTTGGTGCAGATG+TGG - Chr3:77403529-77403548 MsG0380015975.01.T01:intron 55.0%
!! GCCAAATTCATGGCGGGCAT+TGG + Chr3:77402973-77402992 None:intergenic 55.0%
CAGCCACGGCGGACATATTG+TGG - Chr3:77403238-77403257 MsG0380015975.01.T01:CDS 60.0%
CATGACGGTGAAGGTGGCAG+AGG + Chr3:77403027-77403046 None:intergenic 60.0%
CGGCTGAGATTGAGGACGGT+TGG + Chr3:77403131-77403150 None:intergenic 60.0%
CTCTGCCACCTTCACCGTCA+TGG - Chr3:77403025-77403044 MsG0380015975.01.T01:CDS 60.0%
CTTCGAGGGCCGCCATCTTA+CGG + Chr3:77403151-77403170 None:intergenic 60.0%
GCCGCCTATTGTACAGCCAG+TGG - Chr3:77403179-77403198 MsG0380015975.01.T01:CDS 60.0%
GGAGCAGAAGTGGAGTCAGC+TGG - Chr3:77404785-77404804 MsG0380015975.01.T01:CDS 60.0%
GGCTGTACAATAGGCGGCCT+CGG + Chr3:77403177-77403196 None:intergenic 60.0%
TCATGCGAAGGCCCAGGTGT+GGG + Chr3:77404401-77404420 None:intergenic 60.0%
TGTTGGCCCCAGCAGCATCA+TGG + Chr3:77404340-77404359 None:intergenic 60.0%
TTACAGCTCAGCAGCCACGG+CGG - Chr3:77403227-77403246 MsG0380015975.01.T01:CDS 60.0%
TTCATGCGAAGGCCCAGGTG+TGG + Chr3:77404402-77404421 None:intergenic 60.0%
CATTGGCGAGTGCGGCCTCT+GGG + Chr3:77402956-77402975 None:intergenic 65.0%
! CGTAAGATGGCGGCCCTCGA+AGG - Chr3:77403149-77403168 MsG0380015975.01.T01:CDS 65.0%
!! ATGGCGGGCATTGGCGAGTG+CGG + Chr3:77402964-77402983 None:intergenic 65.0%
! GCATTGGCGAGTGCGGCCTC+TGG + Chr3:77402957-77402976 None:intergenic 70.0%
!! AGGCGGCCTCGGTGCCTTCG+AGG + Chr3:77403166-77403185 None:intergenic 75.0%
!! GGCGGCCTCGGTGCCTTCGA+GGG + Chr3:77403165-77403184 None:intergenic 75.0%
!!! GGCGGCCCTCGAAGGCACCG+AGG - Chr3:77403157-77403176 MsG0380015975.01.T01:CDS 80.0%
Chromosome Type Strat End Strand Name
Chr3 gene 77402831 77404842 77402831 ID=MsG0380015975.01;Name=MsG0380015975.01
Chr3 mRNA 77402831 77404842 77402831 ID=MsG0380015975.01.T01;Parent=MsG0380015975.01;Name=MsG0380015975.01.T01;_AED=0.38;_eAED=0.38;_QI=0|0|0|1|1|1|2|0|443
Chr3 exon 77404071 77404842 77404071 ID=MsG0380015975.01.T01:exon:14615;Parent=MsG0380015975.01.T01
Chr3 exon 77402831 77403390 77402831 ID=MsG0380015975.01.T01:exon:14614;Parent=MsG0380015975.01.T01
Chr3 CDS 77404071 77404842 77404071 ID=MsG0380015975.01.T01:cds;Parent=MsG0380015975.01.T01
Chr3 CDS 77402831 77403390 77402831 ID=MsG0380015975.01.T01:cds;Parent=MsG0380015975.01.T01
Gene Sequence

>MsG0380015975.01.T01

ATGGCGGATACGTTGGTTAATGTTAATGTTCTCAACAACAAACGCAGCCTCGAAAACCTTGTTGTTGAGGGCAAAGACGCCAAAAAACTGACAAAATTCAATGGCGGAGAATCTGACGTAGACCCAGAGGCCGCACTCGCCAATGCCCGCCATGAATTTGGCGAACATGGTGGGGTTAACATGTCGATTGAGGCCTCTGCCACCTTCACCGTCATGGAACCAGATACTCTCCGCAAAATATTTGCTGGAGAGCTTGGTCATGAAGGCGATTACTACGTCTACAGCCGTCATTTCAACCCAACCGTCCTCAATCTCAGCCGTAAGATGGCGGCCCTCGAAGGCACCGAGGCCGCCTATTGTACAGCCAGTGGCATGTCCGCTATTTCTGCAGTTCTGTTACAGCTCAGCAGCCACGGCGGACATATTGTGGCTTCTAATACTCTTTATGGTGGGACCCATGCACTCTTGCAGCATTTCTTTGTGAGGACATGCAACATAACCACAACTTTTGTTGACATATCCGATTTGGAAGCAGTTGAGAATGCAATTGTGGAAGGGAAGACCAAAGTGCTGTATTTTGAGTCAATTGCAAATCCAAGCTTGAATGTGGCAAATACTCCTGAGCTAGCTAGGATTGCACGCAAAAAAGGAGTGACTGTGGTGGTTGATAACACCTTTGCTCCTATGCTGCTTTCTCCTGCTCGTCTTGGTGCAGATGTGGTTGTTCACAGTATCTCTAAGTTTATCAGTGGTGGTGGTGACATTATTGCAGGAGCTGTGTGTGGGTCTGCAAGTTTTGTGAACGCATTGATGGGAATTCAAGGAGCCATGATGCTGCTGGGGCCAACAATGAACCCAAAGGTAGCATTTGAACTGTCAGAGAGAATCCCACACCTGGGCCTTCGCATGAAAGAACACAGTCATCGTGCATTGGAATTTGCAACCAGACTCAAAAAATTAGGACTCAATGTGATCTATCCTGGCCTTGAAGATCATCCACAGCATGAACTATTGAAATCCATAGGCAACAAAAGTTATGGTTATGGTGGGATTCTTTGTGTTGACATGGGGACAGTGGAGAAAGCTAACAAATTCATGAGTTACTTGCAAAACTATGCTCATTTTGGTTTTATGGCTGTTAGTTTAGGGTATTATGAAACCCTAATGTCTTGCTCTGGTAGTAGCACAAGTAGTGAGCTGAATGAGGAGGAACAGAAACTTGCTGGGATTACACCAGGGATGGTGAGGATGTCAGTTGGATACATTGGAACATTGGAGCAGAAGTGGAGTCAGCTGGAAAAAGCAGTTATTAAGTTTAATGAAAAACATTAG
Protein sequence

>MsG0380015975.01.T01

MADTLVNVNVLNNKRSLENLVVEGKDAKKLTKFNGGESDVDPEAALANARHEFGEHGGVNMSIEASATFTVMEPDTLRKIFAGELGHEGDYYVYSRHFNPTVLNLSRKMAALEGTEAAYCTASGMSAISAVLLQLSSHGGHIVASNTLYGGTHALLQHFFVRTCNITTTFVDISDLEAVENAIVEGKTKVLYFESIANPSLNVANTPELARIARKKGVTVVVDNTFAPMLLSPARLGADVVVHSISKFISGGGDIIAGAVCGSASFVNALMGIQGAMMLLGPTMNPKVAFELSERIPHLGLRMKEHSHRALEFATRLKKLGLNVIYPGLEDHPQHELLKSIGNKSYGYGGILCVDMGTVEKANKFMSYLQNYAHFGFMAVSLGYYETLMSCSGSSTSSELNEEEQKLAGITPGMVRMSVGYIGTLEQKWSQLEKAVIKFNEKH*