AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016068.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016068.01.T01 MTR_3g082770 96.210 343 12 1 1 342 1 343 0.0 691
MsG0380016068.01.T01 MTR_8g091995 64.093 259 91 2 84 340 23 281 1.27e-122 354
MsG0380016068.01.T01 MTR_2g026715 53.150 254 117 1 79 330 58 311 1.24e-104 310
MsG0380016068.01.T01 MTR_3g460790 57.977 257 106 1 79 333 25 281 1.46e-104 308
MsG0380016068.01.T01 MTR_4g133945 54.475 257 112 3 79 330 12 268 6.80e-103 304
MsG0380016068.01.T01 MTR_3g460790 62.745 204 76 0 79 282 25 228 7.77e-90 270
MsG0380016068.01.T01 MTR_4g100480 50.000 238 118 1 79 315 91 328 1.37e-86 265
MsG0380016068.01.T01 MTR_2g026715 59.877 162 65 0 79 240 71 232 6.52e-72 223
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016068.01.T01 AT5G47650 54.945 273 122 1 61 333 2 273 9.51e-111 324
MsG0380016068.01.T01 AT5G47650 54.945 273 122 1 61 333 2 273 9.51e-111 324
MsG0380016068.01.T01 AT5G47650 54.945 273 122 1 61 333 2 273 9.51e-111 324
MsG0380016068.01.T01 AT5G47650 56.031 257 113 0 77 333 63 319 4.77e-109 321
MsG0380016068.01.T01 AT5G47650 56.031 257 113 0 77 333 64 320 4.77e-109 321
MsG0380016068.01.T01 AT4G25434 54.651 258 115 1 79 334 19 276 5.31e-102 302
MsG0380016068.01.T01 AT4G25434 53.101 258 114 2 79 334 19 271 1.89e-96 287
MsG0380016068.01.T01 AT4G25434 49.474 285 115 2 79 334 19 303 2.91e-96 288
MsG0380016068.01.T01 AT4G12720 53.008 266 122 3 79 341 10 275 1.34e-95 285
MsG0380016068.01.T01 AT4G12720 53.008 266 122 3 79 341 10 275 1.34e-95 285
MsG0380016068.01.T01 AT4G12720 53.008 266 122 3 79 341 10 275 1.34e-95 285
MsG0380016068.01.T01 AT2G04450 54.135 266 117 5 79 340 10 274 1.25e-92 278
MsG0380016068.01.T01 AT2G04430 50.943 265 121 5 79 338 10 270 7.43e-91 273
MsG0380016068.01.T01 AT4G25434 48.070 285 114 3 79 334 19 298 1.28e-90 273
MsG0380016068.01.T01 AT2G04430 50.943 265 121 5 79 338 29 289 1.64e-90 273
MsG0380016068.01.T01 AT4G25434 61.616 198 76 0 79 276 19 216 1.43e-89 268
MsG0380016068.01.T01 AT4G12720 46.078 306 122 4 79 341 10 315 1.55e-87 266
MsG0380016068.01.T01 AT5G47240 48.921 278 135 5 63 336 82 356 1.39e-85 263
MsG0380016068.01.T01 AT4G25434 59.596 198 75 1 79 276 19 211 4.46e-84 253
MsG0380016068.01.T01 AT4G25434 54.222 225 76 1 79 276 19 243 6.65e-84 254
MsG0380016068.01.T01 AT5G47240 44.625 307 134 6 63 336 82 385 8.17e-80 249
MsG0380016068.01.T01 AT4G12720 57.500 200 83 2 79 276 10 209 3.61e-77 236
MsG0380016068.01.T01 AT4G25434 54.500 200 89 1 137 334 32 231 3.03e-76 234
MsG0380016068.01.T01 AT4G25434 54.500 200 89 1 137 334 32 231 3.03e-76 234
MsG0380016068.01.T01 AT4G25434 63.354 161 59 0 79 239 19 179 8.08e-73 225
MsG0380016068.01.T01 AT4G25434 52.500 200 88 2 137 334 32 226 1.19e-70 220
MsG0380016068.01.T01 AT4G25434 54.255 188 59 1 79 239 19 206 3.01e-67 212
MsG0380016068.01.T01 AT4G12720 51.562 192 90 3 153 341 1 192 9.46e-64 201
MsG0380016068.01.T01 AT4G25434 47.393 211 82 2 153 334 1 211 8.75e-62 197
MsG0380016068.01.T01 AT2G04440 54.348 138 61 1 79 214 10 147 2.61e-45 154

Find 61 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTGCCTCTTCAGCTTTAT+TGG 0.138830 3:+78634149 MsG0380016068.01.T01:CDS
ATCACTTGATGCTTGTATAT+TGG 0.219532 3:+78634626 MsG0380016068.01.T01:CDS
TTGATAGGTCCTTGTGGTTC+AGG 0.282859 3:+78635053 MsG0380016068.01.T01:intron
ATGATTTAGAAGTTGCTAAA+AGG 0.301913 3:-78633507 None:intergenic
GATTCAGCGGTAAAGGAATA+TGG 0.321175 3:+78635088 MsG0380016068.01.T01:CDS
AGTTCAAGATTAGTGAAGTT+TGG 0.337473 3:-78635991 None:intergenic
TATACAAGCATCAAGTGATT+TGG 0.351532 3:-78634622 None:intergenic
AAAAGTAGGTTTATCAAAGT+TGG 0.377713 3:+78635869 MsG0380016068.01.T01:CDS
GCATTTGCAGGAATGGTATC+AGG 0.387309 3:-78634661 None:intergenic
GAAGTTTGGAAGTTAACAAA+TGG 0.394809 3:-78635977 None:intergenic
TTTGACTTTCTTACAAAAGT+AGG 0.402294 3:+78635855 MsG0380016068.01.T01:CDS
TAAACATTACCTTGAAATTG+AGG 0.413912 3:-78633592 None:intergenic
AGGATTACTGACCTCCATAT+TGG 0.421202 3:-78634722 None:intergenic
TGTAAACATTGAGGAACCTA+TGG 0.430629 3:+78634242 MsG0380016068.01.T01:CDS
GAGGCAGACCAATATGGTCT+TGG 0.433390 3:-78634135 None:intergenic
ACAAGATTTGAGTGTTCTCT+TGG 0.433589 3:-78634469 None:intergenic
GTCATTTAACATTCAGAGCC+AGG 0.434886 3:+78635589 MsG0380016068.01.T01:CDS
CTGCCTCAATTTCTGAAGCC+TGG 0.437999 3:-78635607 None:intergenic
AATTCAGTGGATGGCAATTG+AGG 0.454069 3:+78635794 MsG0380016068.01.T01:intron
TTCAGAAATTGAGGCAGCTC+AGG 0.463477 3:+78635613 MsG0380016068.01.T01:CDS
AATGGTAGATTCAGCGGTAA+AGG 0.464011 3:+78635081 MsG0380016068.01.T01:CDS
CTCTTCAGCTTTATTGGATG+AGG 0.465200 3:+78634155 MsG0380016068.01.T01:CDS
AAACATTACCTTGAAATTGA+GGG 0.467955 3:-78633591 None:intergenic
ATTATCACAATGGAGGATAC+AGG 0.479874 3:+78634299 MsG0380016068.01.T01:CDS
ATGCGGTGAGAAGCATTTGC+AGG 0.480367 3:-78634673 None:intergenic
GCTGAAGAGGCAGACCAATA+TGG 0.481673 3:-78634141 None:intergenic
AAGTTTGGAAGTTAACAAAT+GGG 0.487670 3:-78635976 None:intergenic
AGGCAGACCAATATGGTCTT+GGG 0.487877 3:-78634134 None:intergenic
TCTATCATCCCTCAATTTCA+AGG 0.489999 3:+78633583 MsG0380016068.01.T01:CDS
GAGCCAGGCTTCAGAAATTG+AGG 0.505160 3:+78635604 MsG0380016068.01.T01:CDS
GGAATGGTATCAGGAGTGTT+GGG 0.509248 3:-78634652 None:intergenic
GTGAGAGGTAGATGTACTAC+TGG 0.512908 3:+78634180 MsG0380016068.01.T01:CDS
AGAGAAGTCAAAGAAGAGAC+AGG 0.513614 3:+78635244 MsG0380016068.01.T01:CDS
AGTGATTTGGTTCAGCATGA+TGG 0.514943 3:-78634609 None:intergenic
GGAATATGGAAATTGCCTAC+TGG 0.514957 3:+78635102 MsG0380016068.01.T01:CDS
AGGAATGGTATCAGGAGTGT+TGG 0.517783 3:-78634653 None:intergenic
GCTAAAACTAAAACTTCTCA+TGG 0.518230 3:+78633559 MsG0380016068.01.T01:CDS
TTATATGCATGTTGCAACCT+CGG 0.518990 3:+78635567 MsG0380016068.01.T01:CDS
GTGAGAAGCATTTGCAGGAA+TGG 0.520377 3:-78634668 None:intergenic
CTCATCCAATAAAGCTGAAG+AGG 0.520600 3:-78634154 None:intergenic
TCTTGTGGCTTCTGCTGTTG+AGG 0.529767 3:+78634486 MsG0380016068.01.T01:CDS
GCTTCTCACCGCATTTCTAT+CGG 0.534615 3:+78634682 MsG0380016068.01.T01:CDS
GTAGGTTTATCAAAGTTGGA+AGG 0.564992 3:+78635873 MsG0380016068.01.T01:CDS
AGGAGTTATTGTAAACATTG+AGG 0.569638 3:+78634233 MsG0380016068.01.T01:CDS
GCCTACTGGAGCTGTTAATG+AGG 0.578161 3:+78635116 MsG0380016068.01.T01:CDS
GCAAAATCAAAAGAATCCAT+AGG 0.578220 3:-78634258 None:intergenic
TTATTGGATGAGGAAGTGAG+AGG 0.590204 3:+78634165 MsG0380016068.01.T01:CDS
GTGGAGGGACAGAAGATGTG+AGG 0.596463 3:-78633531 None:intergenic
TGGATTACTCAAAGCTGTTG+AGG 0.604757 3:+78634200 MsG0380016068.01.T01:CDS
AAGAGAACACTCAAATCTTG+TGG 0.611816 3:+78634471 MsG0380016068.01.T01:CDS
TCTAGGGAAAGAAGGGAGTG+TGG 0.616092 3:+78634437 MsG0380016068.01.T01:intron
TGTAGTCAATGCCAATATGG+AGG 0.628749 3:+78634711 MsG0380016068.01.T01:CDS
AAGTTGGAAGGAAAGTACTC+AGG 0.639796 3:+78635885 MsG0380016068.01.T01:CDS
GTACACATGGGACTTGCAAG+AGG 0.641683 3:-78635934 None:intergenic
ATGCTTCATTATCACAATGG+AGG 0.642405 3:+78634292 MsG0380016068.01.T01:CDS
TAGATGCTTCATTATCACAA+TGG 0.672794 3:+78634289 MsG0380016068.01.T01:CDS
AAAGCTGTTGAGGATCAACA+TGG 0.673299 3:+78634210 MsG0380016068.01.T01:CDS
CTCTGAATGTTAAATGACCG+AGG 0.679928 3:-78635584 None:intergenic
ACCTCATTAACAGCTCCAGT+AGG 0.685283 3:-78635117 None:intergenic
CAAAAGCACCGATAGAAATG+CGG 0.718623 3:-78634690 None:intergenic
GCTGTTGAGGATCAACATGG+AGG 0.750639 3:+78634213 MsG0380016068.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGATATTGAAAAATAATT+TGG - Chr3:78634013-78634032 None:intergenic 10.0%
!! GATTAATAAAAAAATATAGA+AGG - Chr3:78634745-78634764 None:intergenic 10.0%
!!! ATTTTTTTTTAAAAATTCAG+TGG + Chr3:78635781-78635800 MsG0380016068.01.T01:intron 10.0%
!! AAAAATTTATTTGACTATGT+TGG + Chr3:78634894-78634913 MsG0380016068.01.T01:intron 15.0%
!! AATATGTAAAACTAAAGTAA+TGG - Chr3:78635646-78635665 None:intergenic 15.0%
!! TCCTTAAAATTAAGAAAAAT+TGG + Chr3:78634343-78634362 MsG0380016068.01.T01:intron 15.0%
!!! TATTGTTTTGTTATTTCTAT+TGG + Chr3:78634389-78634408 MsG0380016068.01.T01:intron 15.0%
!!! TCCAATTTTTCTTAATTTTA+AGG - Chr3:78634347-78634366 None:intergenic 15.0%
!!! TTTTTTATTAATCAGATTGA+AGG + Chr3:78634752-78634771 MsG0380016068.01.T01:intron 15.0%
!! AAAACTCACATTAAATGAAT+TGG - Chr3:78635759-78635778 None:intergenic 20.0%
!! AAGGTTTGAATTTCAAAATA+TGG - Chr3:78635330-78635349 None:intergenic 20.0%
!! TACACATTAAGAAATATGTA+TGG - Chr3:78635004-78635023 None:intergenic 20.0%
!! TGTTCGAATATTACTATATT+TGG + Chr3:78635453-78635472 MsG0380016068.01.T01:intron 20.0%
!!! AGCAAAGTTATTTTTCAATA+TGG + Chr3:78634038-78634057 MsG0380016068.01.T01:intron 20.0%
!!! TAAAGTGTTCATTTTGTTAA+GGG + Chr3:78633704-78633723 MsG0380016068.01.T01:intron 20.0%
!!! TCAATCCATTTTTACATAAA+TGG - Chr3:78633849-78633868 None:intergenic 20.0%
!!! TTAAAGTGTTCATTTTGTTA+AGG + Chr3:78633703-78633722 MsG0380016068.01.T01:intron 20.0%
!!! TTTAAAGTTTCACAAAATCA+CGG - Chr3:78633688-78633707 None:intergenic 20.0%
!!! TTTTTTAAAAATTCAGTGGA+TGG + Chr3:78635785-78635804 MsG0380016068.01.T01:intron 20.0%
! AAAAGTAGGTTTATCAAAGT+TGG + Chr3:78635869-78635888 MsG0380016068.01.T01:CDS 25.0%
! AAACATTACCTTGAAATTGA+GGG - Chr3:78633594-78633613 None:intergenic 25.0%
! AAGTTTGGAAGTTAACAAAT+GGG - Chr3:78635979-78635998 None:intergenic 25.0%
! ATGATTTAGAAGTTGCTAAA+AGG - Chr3:78633510-78633529 None:intergenic 25.0%
! GAAAAGATGAATAAAAGCAA+TGG - Chr3:78635361-78635380 None:intergenic 25.0%
! GTGATCCATTTATGTAAAAA+TGG + Chr3:78633841-78633860 MsG0380016068.01.T01:intron 25.0%
! TAAACATTACCTTGAAATTG+AGG - Chr3:78633595-78633614 None:intergenic 25.0%
! TTAGTACTTGAATAATGCTT+AGG - Chr3:78634075-78634094 None:intergenic 25.0%
!! TGAAATTCAAACCTTTTCTA+AGG + Chr3:78635335-78635354 MsG0380016068.01.T01:intron 25.0%
!! TTTGACTTTCTTACAAAAGT+AGG + Chr3:78635855-78635874 MsG0380016068.01.T01:CDS 25.0%
!!! CAGTCTTATTTTTGTTTTTC+TGG + Chr3:78635494-78635513 MsG0380016068.01.T01:intron 25.0%
!!! GTTATTTCTATTGGTTGTTA+AGG + Chr3:78634398-78634417 MsG0380016068.01.T01:intron 25.0%
!!! GTTTTAGTTTTAGCTAAAAG+TGG - Chr3:78633553-78633572 None:intergenic 25.0%
!!! TTTTGGAATGTTGTTTTCTA+GGG + Chr3:78634421-78634440 MsG0380016068.01.T01:intron 25.0%
AAATATGTATGGTCACATCA+AGG - Chr3:78634993-78635012 None:intergenic 30.0%
ACATGCACTAAGATTATGTT+TGG + Chr3:78633766-78633785 MsG0380016068.01.T01:intron 30.0%
AGGAGTTATTGTAAACATTG+AGG + Chr3:78634233-78634252 MsG0380016068.01.T01:CDS 30.0%
ATCACTTGATGCTTGTATAT+TGG + Chr3:78634626-78634645 MsG0380016068.01.T01:CDS 30.0%
ATTTGAATCCAGCCTATAAA+AGG - Chr3:78634588-78634607 None:intergenic 30.0%
GAAAAAAATGGTAGATTCAG+CGG + Chr3:78635075-78635094 MsG0380016068.01.T01:CDS 30.0%
GAAGTTTGGAAGTTAACAAA+TGG - Chr3:78635980-78635999 None:intergenic 30.0%
GCAAAATCAAAAGAATCCAT+AGG - Chr3:78634261-78634280 None:intergenic 30.0%
GCTAAAACTAAAACTTCTCA+TGG + Chr3:78633559-78633578 MsG0380016068.01.T01:CDS 30.0%
TACATTACATCACATTCACA+AGG - Chr3:78634552-78634571 None:intergenic 30.0%
TAGATGCTTCATTATCACAA+TGG + Chr3:78634289-78634308 MsG0380016068.01.T01:CDS 30.0%
TATACAAGCATCAAGTGATT+TGG - Chr3:78634625-78634644 None:intergenic 30.0%
TCATTTGAACTCAATTTGCA+GGG + Chr3:78635196-78635215 MsG0380016068.01.T01:intron 30.0%
TTCATTTGAACTCAATTTGC+AGG + Chr3:78635195-78635214 MsG0380016068.01.T01:intron 30.0%
TTTAGCATTCAGGTAAGATT+TGG + Chr3:78635406-78635425 MsG0380016068.01.T01:intron 30.0%
! ACATGCAATGTGAACATTTT+TGG - Chr3:78635433-78635452 None:intergenic 30.0%
! AGTCAAATAGCTCATTTTGT+TGG - Chr3:78635842-78635861 None:intergenic 30.0%
! TTTGACTATGTTGGACATTT+TGG + Chr3:78634903-78634922 MsG0380016068.01.T01:intron 30.0%
! TTTTGTAGTCAATGCCAATA+TGG + Chr3:78634708-78634727 MsG0380016068.01.T01:CDS 30.0%
!! TCTATTGGTTGTTAAGGTTT+TGG + Chr3:78634404-78634423 MsG0380016068.01.T01:intron 30.0%
!! TTGTTGAAGTTTTAGCATTC+AGG + Chr3:78635396-78635415 MsG0380016068.01.T01:CDS 30.0%
!! TTTTATTTGATAGGTCCTTG+TGG + Chr3:78635047-78635066 MsG0380016068.01.T01:intron 30.0%
!! TTTTGTGTTGATGTACACAT+GGG - Chr3:78635949-78635968 None:intergenic 30.0%
!!! GTTTTGGAATGTTGTTTTCT+AGG + Chr3:78634420-78634439 MsG0380016068.01.T01:intron 30.0%
!!! TAGTTTTAGCTAAAAGTGGA+GGG - Chr3:78633549-78633568 None:intergenic 30.0%
!!! TTAGTTTTAGCTAAAAGTGG+AGG - Chr3:78633550-78633569 None:intergenic 30.0%
AACTGTTCTTGTAGCCTAAA+AGG - Chr3:78634107-78634126 None:intergenic 35.0%
AAGAGAACACTCAAATCTTG+TGG + Chr3:78634471-78634490 MsG0380016068.01.T01:CDS 35.0%
ACAAGATTTGAGTGTTCTCT+TGG - Chr3:78634472-78634491 None:intergenic 35.0%
ACTGTTCTTGTAGCCTAAAA+GGG - Chr3:78634106-78634125 None:intergenic 35.0%
AGCCTATGAAACAACAAGAA+TGG - Chr3:78634820-78634839 None:intergenic 35.0%
ATGCTTCATTATCACAATGG+AGG + Chr3:78634292-78634311 MsG0380016068.01.T01:CDS 35.0%
ATTATCACAATGGAGGATAC+AGG + Chr3:78634299-78634318 MsG0380016068.01.T01:CDS 35.0%
CCTTGACACAAAATCAATGT+TGG + Chr3:78633939-78633958 MsG0380016068.01.T01:intron 35.0%
CTTGTGGTTCAGGAAAAAAA+TGG + Chr3:78635063-78635082 MsG0380016068.01.T01:CDS 35.0%
GTAGGTTTATCAAAGTTGGA+AGG + Chr3:78635873-78635892 MsG0380016068.01.T01:CDS 35.0%
TCTATCATCCCTCAATTTCA+AGG + Chr3:78633583-78633602 MsG0380016068.01.T01:CDS 35.0%
TGAATTAGTGGTGAAACTGT+TGG - Chr3:78633745-78633764 None:intergenic 35.0%
TGATTCAACTTAGAGTTGTG+TGG - Chr3:78633982-78634001 None:intergenic 35.0%
TGTAAACATTGAGGAACCTA+TGG + Chr3:78634242-78634261 MsG0380016068.01.T01:CDS 35.0%
TTAGTGCATGTCTGAATTAG+TGG - Chr3:78633757-78633776 None:intergenic 35.0%
TTATATGCATGTTGCAACCT+CGG + Chr3:78635567-78635586 MsG0380016068.01.T01:CDS 35.0%
! AAAAGCAATGGCCTTAGAAA+AGG - Chr3:78635349-78635368 None:intergenic 35.0%
! AATCAGATTGAAGGTGTGTT+CGG + Chr3:78634761-78634780 MsG0380016068.01.T01:intron 35.0%
! AGCTCATTTTGTTGGAGAAA+AGG - Chr3:78635834-78635853 None:intergenic 35.0%
! AGGTTCATGAAAAGTACAAC+TGG - Chr3:78634956-78634975 None:intergenic 35.0%
! AGTTGTACTTTTCATGAACC+TGG + Chr3:78634955-78634974 MsG0380016068.01.T01:intron 35.0%
! CATTTTGCTGCTCCTTTTAT+AGG + Chr3:78634573-78634592 MsG0380016068.01.T01:intron 35.0%
! TTCTTTTCCCAAGACCATAT+TGG + Chr3:78634127-78634146 MsG0380016068.01.T01:CDS 35.0%
!! ACTAATTTGTGACCCCTTTT+AGG + Chr3:78634090-78634109 MsG0380016068.01.T01:intron 35.0%
!! CTTTTGTGTTGATGTACACA+TGG - Chr3:78635950-78635969 None:intergenic 35.0%
!! GTTGTTTTCTAGGGAAAGAA+GGG + Chr3:78634430-78634449 MsG0380016068.01.T01:intron 35.0%
!! TGCCATTCTTGTTGTTTCAT+AGG + Chr3:78634815-78634834 MsG0380016068.01.T01:intron 35.0%
!!! CATTTTTTTCCTGAACCACA+AGG - Chr3:78635065-78635084 None:intergenic 35.0%
!!! CCAACATTGATTTTGTGTCA+AGG - Chr3:78633942-78633961 None:intergenic 35.0%
!!! TGTTGTTTTCTAGGGAAAGA+AGG + Chr3:78634429-78634448 MsG0380016068.01.T01:intron 35.0%
AAAGCTGTTGAGGATCAACA+TGG + Chr3:78634210-78634229 MsG0380016068.01.T01:CDS 40.0%
AATGGTAGATTCAGCGGTAA+AGG + Chr3:78635081-78635100 MsG0380016068.01.T01:CDS 40.0%
AATTCAGTGGATGGCAATTG+AGG + Chr3:78635794-78635813 MsG0380016068.01.T01:intron 40.0%
ACTTAGAGTTGTGTGGTGTT+TGG - Chr3:78633975-78633994 None:intergenic 40.0%
AGAGAAGTCAAAGAAGAGAC+AGG + Chr3:78635244-78635263 MsG0380016068.01.T01:CDS 40.0%
AGGATTACTGACCTCCATAT+TGG - Chr3:78634725-78634744 None:intergenic 40.0%
CTCATCCAATAAAGCTGAAG+AGG - Chr3:78634157-78634176 None:intergenic 40.0%
CTCTGAATGTTAAATGACCG+AGG - Chr3:78635587-78635606 None:intergenic 40.0%
CTGTTCTTGTAGCCTAAAAG+GGG - Chr3:78634105-78634124 None:intergenic 40.0%
GAATGCTTATAGTCATGTGC+TGG - Chr3:78634873-78634892 None:intergenic 40.0%
GATTCAGCGGTAAAGGAATA+TGG + Chr3:78635088-78635107 MsG0380016068.01.T01:CDS 40.0%
GGAATATGGAAATTGCCTAC+TGG + Chr3:78635102-78635121 MsG0380016068.01.T01:CDS 40.0%
GTCATTTAACATTCAGAGCC+AGG + Chr3:78635589-78635608 MsG0380016068.01.T01:CDS 40.0%
TGGATTACTCAAAGCTGTTG+AGG + Chr3:78634200-78634219 MsG0380016068.01.T01:CDS 40.0%
TGTAGTCAATGCCAATATGG+AGG + Chr3:78634711-78634730 MsG0380016068.01.T01:CDS 40.0%
TTATTGGATGAGGAAGTGAG+AGG + Chr3:78634165-78634184 MsG0380016068.01.T01:CDS 40.0%
!! AAGTTGGAAGGAAAGTACTC+AGG + Chr3:78635885-78635904 MsG0380016068.01.T01:CDS 40.0%
!! AGTGATTTGGTTCAGCATGA+TGG - Chr3:78634612-78634631 None:intergenic 40.0%
!! CAAAAGCACCGATAGAAATG+CGG - Chr3:78634693-78634712 None:intergenic 40.0%
!! CTCTTCAGCTTTATTGGATG+AGG + Chr3:78634155-78634174 MsG0380016068.01.T01:CDS 40.0%
!! TCAAGGTAGATATTGACTCC+AGG - Chr3:78634976-78634995 None:intergenic 40.0%
ACCTCATTAACAGCTCCAGT+AGG - Chr3:78635120-78635139 None:intergenic 45.0%
AGGCAGACCAATATGGTCTT+GGG - Chr3:78634137-78634156 None:intergenic 45.0%
GCATTTGCAGGAATGGTATC+AGG - Chr3:78634664-78634683 None:intergenic 45.0%
GCTTCTCACCGCATTTCTAT+CGG + Chr3:78634682-78634701 MsG0380016068.01.T01:CDS 45.0%
GTGAGAGGTAGATGTACTAC+TGG + Chr3:78634180-78634199 MsG0380016068.01.T01:CDS 45.0%
TGAACTCAATTTGCAGGGTG+AGG + Chr3:78635201-78635220 MsG0380016068.01.T01:intron 45.0%
TGCTTATAGTCATGTGCTGG+TGG - Chr3:78634870-78634889 None:intergenic 45.0%
TTCAGAAATTGAGGCAGCTC+AGG + Chr3:78635613-78635632 MsG0380016068.01.T01:CDS 45.0%
TTGATAGGTCCTTGTGGTTC+AGG + Chr3:78635053-78635072 MsG0380016068.01.T01:intron 45.0%
! AGGAATGGTATCAGGAGTGT+TGG - Chr3:78634656-78634675 None:intergenic 45.0%
! GTCTGCCTCTTCAGCTTTAT+TGG + Chr3:78634149-78634168 MsG0380016068.01.T01:CDS 45.0%
! TTGCTGCTCCTTTTATAGGC+TGG + Chr3:78634577-78634596 MsG0380016068.01.T01:intron 45.0%
!! GGAATGGTATCAGGAGTGTT+GGG - Chr3:78634655-78634674 None:intergenic 45.0%
!! GTGAGAAGCATTTGCAGGAA+TGG - Chr3:78634671-78634690 None:intergenic 45.0%
!!! TTATTTTATTTTTATTTGAT+AGG + Chr3:78635038-78635057 MsG0380016068.01.T01:intron 5.0%
ACGAGACACCCAACATGTCT+CGG - Chr3:78634796-78634815 None:intergenic 50.0%
GAGCCAGGCTTCAGAAATTG+AGG + Chr3:78635604-78635623 MsG0380016068.01.T01:CDS 50.0%
GAGGCAGACCAATATGGTCT+TGG - Chr3:78634138-78634157 None:intergenic 50.0%
GCCTACTGGAGCTGTTAATG+AGG + Chr3:78635116-78635135 MsG0380016068.01.T01:CDS 50.0%
GCTGAAGAGGCAGACCAATA+TGG - Chr3:78634144-78634163 None:intergenic 50.0%
GCTGTTGAGGATCAACATGG+AGG + Chr3:78634213-78634232 MsG0380016068.01.T01:CDS 50.0%
GTACACATGGGACTTGCAAG+AGG - Chr3:78635937-78635956 None:intergenic 50.0%
GTCTGACACCGAGACATGTT+GGG + Chr3:78634785-78634804 MsG0380016068.01.T01:intron 50.0%
TCTAGGGAAAGAAGGGAGTG+TGG + Chr3:78634437-78634456 MsG0380016068.01.T01:intron 50.0%
TCTTGTGGCTTCTGCTGTTG+AGG + Chr3:78634486-78634505 MsG0380016068.01.T01:CDS 50.0%
TGTCTGACACCGAGACATGT+TGG + Chr3:78634784-78634803 MsG0380016068.01.T01:intron 50.0%
!! ATGCGGTGAGAAGCATTTGC+AGG - Chr3:78634676-78634695 None:intergenic 50.0%
!! CTGCCTCAATTTCTGAAGCC+TGG - Chr3:78635610-78635629 None:intergenic 50.0%
GTGGAGGGACAGAAGATGTG+AGG - Chr3:78633534-78633553 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr3 gene 78633460 78636004 78633460 ID=MsG0380016068.01;Name=MsG0380016068.01
Chr3 mRNA 78633460 78636004 78633460 ID=MsG0380016068.01.T01;Parent=MsG0380016068.01;Name=MsG0380016068.01.T01;_AED=0.43;_eAED=0.43;_QI=0|0|0|1|0.87|0.77|9|0|343
Chr3 exon 78633460 78633609 78633460 ID=MsG0380016068.01.T01:exon:17502;Parent=MsG0380016068.01.T01
Chr3 exon 78634120 78634320 78634120 ID=MsG0380016068.01.T01:exon:17503;Parent=MsG0380016068.01.T01
Chr3 exon 78634442 78634507 78634442 ID=MsG0380016068.01.T01:exon:17504;Parent=MsG0380016068.01.T01
Chr3 exon 78634595 78634732 78634595 ID=MsG0380016068.01.T01:exon:17505;Parent=MsG0380016068.01.T01
Chr3 exon 78635060 78635137 78635060 ID=MsG0380016068.01.T01:exon:17506;Parent=MsG0380016068.01.T01
Chr3 exon 78635217 78635267 78635217 ID=MsG0380016068.01.T01:exon:17507;Parent=MsG0380016068.01.T01
Chr3 exon 78635383 78635417 78635383 ID=MsG0380016068.01.T01:exon:17508;Parent=MsG0380016068.01.T01
Chr3 exon 78635526 78635634 78635526 ID=MsG0380016068.01.T01:exon:17509;Parent=MsG0380016068.01.T01
Chr3 exon 78635801 78636004 78635801 ID=MsG0380016068.01.T01:exon:17510;Parent=MsG0380016068.01.T01
Chr3 CDS 78633460 78633609 78633460 ID=MsG0380016068.01.T01:cds;Parent=MsG0380016068.01.T01
Chr3 CDS 78634120 78634320 78634120 ID=MsG0380016068.01.T01:cds;Parent=MsG0380016068.01.T01
Chr3 CDS 78634442 78634507 78634442 ID=MsG0380016068.01.T01:cds;Parent=MsG0380016068.01.T01
Chr3 CDS 78634595 78634732 78634595 ID=MsG0380016068.01.T01:cds;Parent=MsG0380016068.01.T01
Chr3 CDS 78635060 78635137 78635060 ID=MsG0380016068.01.T01:cds;Parent=MsG0380016068.01.T01
Chr3 CDS 78635217 78635267 78635217 ID=MsG0380016068.01.T01:cds;Parent=MsG0380016068.01.T01
Chr3 CDS 78635383 78635417 78635383 ID=MsG0380016068.01.T01:cds;Parent=MsG0380016068.01.T01
Chr3 CDS 78635526 78635634 78635526 ID=MsG0380016068.01.T01:cds;Parent=MsG0380016068.01.T01
Chr3 CDS 78635801 78636004 78635801 ID=MsG0380016068.01.T01:cds;Parent=MsG0380016068.01.T01
Gene Sequence

>MsG0380016068.01.T01

ATGATGATGAGGTCTAGAGCTATCACTAGCAAACTTTATTCTTCATGCCTTTTAGCAACTTCTAAATCATTCCTCACATCTTCTGTCCCTCCACTTTTAGCTAAAACTAAAACTTCTCATGGCTCTATCATCCCTCAATTTCAAGGTAATAACAGTTTTCTTTTCCCAAGACCATATTGGTCTGCCTCTTCAGCTTTATTGGATGAGGAAGTGAGAGGTAGATGTACTACTGGATTACTCAAAGCTGTTGAGGATCAACATGGAGGAGTTATTGTAAACATTGAGGAACCTATGGATTCTTTTGATTTTGCTTCTATGCTAGATGCTTCATTATCACAATGGAGGATACAGGGAAAGAAGGGAGTGTGGATCAAATTGCCAAGAGAACACTCAAATCTTGTGGCTTCTGCTGTTGAGGCTGGATTCAAATACCATCATGCTGAACCAAATCACTTGATGCTTGTATATTGGATTCCCAACACTCCTGATACCATTCCTGCAAATGCTTCTCACCGCATTTCTATCGGTGCTTTTGTAGTCAATGCCAATATGGAGGTCCTTGTGGTTCAGGAAAAAAATGGTAGATTCAGCGGTAAAGGAATATGGAAATTGCCTACTGGAGCTGTTAATGAGGGTGAGGATGTTTGTGCTGCTGCAATCAGAGAAGTCAAAGAAGAGACAGGAATAGACACTGAGTTTGTTGAAGTTTTAGCATTCAGAGAAAGACATAAATGTTTCTTTCAAAAGTCAGAGATACTATTTATATGCATGTTGCAACCTCGGTCATTTAACATTCAGAGCCAGGCTTCAGAAATTGAGGCAGCTCAGTGGATGGCAATTGAGGATTATGTAGCTCAACCTTTTCTCCAACAAAATGAGCTATTTGACTTTCTTACAAAAGTAGGTTTATCAAAGTTGGAAGGAAAGTACTCAGGCTTTTCTACTATGCTTACTAGCACTTCCTCTTGCAAGTCCCATGTGTACATCAACACAAAAGATTCTTCCCATTTGTTAACTTCCAAACTTCACTAA
Protein sequence

>MsG0380016068.01.T01

MMMRSRAITSKLYSSCLLATSKSFLTSSVPPLLAKTKTSHGSIIPQFQGNNSFLFPRPYWSASSALLDEEVRGRCTTGLLKAVEDQHGGVIVNIEEPMDSFDFASMLDASLSQWRIQGKKGVWIKLPREHSNLVASAVEAGFKYHHAEPNHLMLVYWIPNTPDTIPANASHRISIGAFVVNANMEVLVVQEKNGRFSGKGIWKLPTGAVNEGEDVCAAAIREVKEETGIDTEFVEVLAFRERHKCFFQKSEILFICMLQPRSFNIQSQASEIEAAQWMAIEDYVAQPFLQQNELFDFLTKVGLSKLEGKYSGFSTMLTSTSSCKSHVYINTKDSSHLLTSKLH*