AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016237.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016237.01.T01 MTR_3g086170 95.153 392 18 1 70 460 74 465 0.0 714
MsG0380016237.01.T01 MTR_3g086160 100.000 75 0 0 1 75 1 75 4.47e-50 166
MsG0380016237.01.T01 MTR_8g089560 75.510 49 11 1 7 54 5 53 1.35e-19 83.2
MsG0380016237.01.T01 MTR_4g104085 78.049 41 8 1 7 46 17 57 4.30e-16 74.3
MsG0380016237.01.T01 MTR_5g096030 87.879 33 4 0 10 42 4 36 5.83e-16 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016237.01.T01 AT3G26090 63.239 389 137 3 70 456 73 457 0.0 522
MsG0380016237.01.T01 AT3G26090 66.358 324 108 1 70 392 73 396 6.60e-161 461
MsG0380016237.01.T01 AT5G40645 64.615 65 13 2 11 75 13 67 1.05e-19 83.6
MsG0380016237.01.T01 AT4G35655 65.385 52 18 0 6 57 3 54 1.88e-19 82.8
MsG0380016237.01.T01 AT5G63270 54.054 74 30 1 6 75 2 75 5.79e-19 81.6
MsG0380016237.01.T01 AT5G55850 79.487 39 8 0 10 48 5 43 7.74e-17 75.5
MsG0380016237.01.T01 AT5G55850 79.487 39 8 0 10 48 5 43 1.99e-16 75.5
MsG0380016237.01.T01 AT5G55850 79.487 39 8 0 10 48 21 59 3.01e-16 75.5
MsG0380016237.01.T01 AT2G17660 59.615 52 21 0 6 57 3 54 3.33e-16 73.6
MsG0380016237.01.T01 AT2G04410 90.909 33 3 0 10 42 5 37 3.56e-16 73.6
MsG0380016237.01.T01 AT3G48450 81.818 33 6 0 10 42 7 39 9.06e-14 67.4
MsG0380016237.01.T01 AT3G48450 81.818 33 6 0 10 42 7 39 9.06e-14 67.4

Find 119 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTAAGAGGCTTCTTTATA+TGG 0.206814 3:-80817459 None:intergenic
ACATCCCATTCTCCAAATTT+AGG 0.226943 3:-80813678 None:intergenic
TTGTGGACACTAACCATAAA+TGG 0.245948 3:-80819631 None:intergenic
GGAAAGCCTCTACCTAAATT+TGG 0.252908 3:+80813666 MsG0380016237.01.T01:CDS
CGCACAATGGGCCAGGCTTT+GGG 0.270464 3:+80818214 MsG0380016237.01.T01:CDS
TTCTCTTGAACAAGAAATTC+AGG 0.271912 3:+80818311 MsG0380016237.01.T01:CDS
CTTCGTGTTTATTTCCAGTT+TGG 0.274009 3:+80816770 MsG0380016237.01.T01:CDS
CACATTCCTCCTGGAACTTC+AGG 0.290302 3:-80819382 None:intergenic
CATTTGTTCTGTCAGTTGTA+TGG 0.298681 3:+80817870 MsG0380016237.01.T01:intron
TCGCACAATGGGCCAGGCTT+TGG 0.310716 3:+80818213 MsG0380016237.01.T01:CDS
AAAGAATAAGTGGAATTAAA+AGG 0.316374 3:-80817046 None:intergenic
TTCGTGTTTATTTCCAGTTT+GGG 0.317374 3:+80816771 MsG0380016237.01.T01:CDS
AGATACTTTAACCACTTCTT+AGG 0.319174 3:+80819816 MsG0380016237.01.T01:three_prime_UTR
ATTGAGAAGTACATAGTTGC+AGG 0.335851 3:+80818866 MsG0380016237.01.T01:CDS
AGCTTATCCAATGGTTCATT+AGG 0.342753 3:-80818289 None:intergenic
AAGAAAATTGCTTCTGCATC+AGG 0.347906 3:+80813759 MsG0380016237.01.T01:CDS
TATATCTACAGTTGCTTGGC+TGG 0.350456 3:+80818752 MsG0380016237.01.T01:intron
GCCCATTGTGCGAAATTCTC+TGG 0.360100 3:-80818203 None:intergenic
AATCTTCTTCCTGAAGTTCC+AGG 0.366374 3:+80819373 MsG0380016237.01.T01:CDS
ATGTAGGAAGGAAGACAAAA+AGG 0.367948 3:+80819666 MsG0380016237.01.T01:three_prime_UTR
GGTGAAGGTCCACTAGGGTT+TGG 0.369983 3:+80816793 MsG0380016237.01.T01:CDS
CCCTGGATTGTAGGTGCTGC+TGG 0.385271 3:+80817071 MsG0380016237.01.T01:CDS
CAAAACTAAAAGAAGAAATC+TGG 0.386884 3:-80817951 None:intergenic
TGTATGTTGCCACTTTGGTT+GGG 0.390598 3:+80817536 MsG0380016237.01.T01:CDS
TGTGATAATACCCCACTATC+AGG 0.396001 3:-80818241 None:intergenic
CTGTGCATCATATAGAGTTC+AGG 0.397383 3:+80817569 MsG0380016237.01.T01:CDS
AGAACTTGGCAAAAGATTAC+TGG 0.399670 3:+80819345 MsG0380016237.01.T01:intron
AGTGGACCTTCACCCCAAAC+TGG 0.402643 3:-80816784 None:intergenic
ATTTGTTCTGTCAGTTGTAT+GGG 0.411134 3:+80817871 MsG0380016237.01.T01:intron
CTGCGTGAGAAGAATCTATA+TGG 0.411292 3:+80818832 MsG0380016237.01.T01:CDS
TTATTTCCAGTTTGGGGTGA+AGG 0.425413 3:+80816778 MsG0380016237.01.T01:CDS
TCCAGAGAATTTCGCACAAT+GGG 0.425473 3:+80818202 MsG0380016237.01.T01:CDS
GGCTAGTATCATGTACATCT+TGG 0.427662 3:+80819736 MsG0380016237.01.T01:three_prime_UTR
CTCTACCTAAATTTGGAGAA+TGG 0.428121 3:+80813673 MsG0380016237.01.T01:CDS
ACACTAACCATAAATGGAAT+AGG 0.430723 3:-80819625 None:intergenic
GTCATACAAAGGACGTTGTT+AGG 0.432317 3:-80819900 None:intergenic
TTGTATGTTGCCACTTTGGT+TGG 0.435848 3:+80817535 MsG0380016237.01.T01:CDS
TTGTTAACATCTGTATAGTC+AGG 0.438021 3:+80819715 MsG0380016237.01.T01:three_prime_UTR
CCGACTCATGACTTGGTACT+TGG 0.448826 3:+80819540 MsG0380016237.01.T01:exon
AACACATGAAGGCAAACAAC+TGG 0.456389 3:-80817514 None:intergenic
TCTACCTAAATTTGGAGAAT+GGG 0.456490 3:+80813674 MsG0380016237.01.T01:CDS
CATCTCTCATAGAAGCAAAC+AGG 0.456965 3:+80819134 MsG0380016237.01.T01:CDS
TCTTCTCACGCAGTCATGTT+CGG 0.462374 3:-80818822 None:intergenic
AGAATTTCGCACAATGGGCC+AGG 0.465661 3:+80818207 MsG0380016237.01.T01:CDS
ACCAGCAGCACCTACAATCC+AGG 0.466696 3:-80817072 None:intergenic
ATTATTATCGTTGGTGCGAC+CGG 0.468268 3:-80813817 None:intergenic
AAAGGCTAGCATACTTGTGT+TGG 0.468592 3:+80818117 MsG0380016237.01.T01:intron
GCTTTGGGCATACCTGATAG+TGG 0.472370 3:+80818229 MsG0380016237.01.T01:CDS
ATCTCATATCACATTCCTCC+TGG 0.475428 3:-80819391 None:intergenic
AGAAGATGATCATGGTGAAA+AGG 0.477104 3:-80819491 None:intergenic
TTTACTAATAGGTACCTTTG+AGG 0.483290 3:-80813856 None:intergenic
ATCCAGGGCAAAAGAATAAG+TGG 0.484753 3:-80817056 None:intergenic
CATTCTCCAAATTTAGGTAG+AGG 0.484872 3:-80813672 None:intergenic
GCTAGTATCATGTACATCTT+GGG 0.487898 3:+80819737 MsG0380016237.01.T01:three_prime_UTR
GTTTGGGGTGAAGGTCCACT+AGG 0.490024 3:+80816787 MsG0380016237.01.T01:CDS
TAAAGTATCTTGAAAAGTGT+AGG 0.491284 3:-80819803 None:intergenic
GTGAGGAGGTGTATGTAGGA+AGG 0.492586 3:+80819654 MsG0380016237.01.T01:three_prime_UTR
GTATGTTGCCACTTTGGTTG+GGG 0.493758 3:+80817537 MsG0380016237.01.T01:CDS
TACGAGCTTGAGCAAATGAC+AGG 0.497023 3:+80819422 MsG0380016237.01.T01:CDS
GCAATATATCTACAGTTGCT+TGG 0.504454 3:+80818748 MsG0380016237.01.T01:intron
TGTGTTGTATGTTGCCACTT+TGG 0.506197 3:+80817531 MsG0380016237.01.T01:CDS
ATATCTACAGTTGCTTGGCT+GGG 0.508512 3:+80818753 MsG0380016237.01.T01:intron
AAAGTATCTTGAAAAGTGTA+GGG 0.528393 3:-80819802 None:intergenic
AATGATACCGACTCATGACT+TGG 0.528462 3:+80819533 MsG0380016237.01.T01:exon
CACAAAGTGAACAAATTTCG+AGG 0.531257 3:+80818260 MsG0380016237.01.T01:CDS
CTTTGGGCATACCTGATAGT+GGG 0.533397 3:+80818230 MsG0380016237.01.T01:CDS
GAGTCATATCGTCGTTGTGA+AGG 0.536780 3:-80813789 None:intergenic
TACATACACCTCCTCACTTG+TGG 0.537541 3:-80819648 None:intergenic
TATCAGGTATGCCCAAAGCC+TGG 0.539962 3:-80818225 None:intergenic
GAGATCAGCGCGTGCAAGGT+CGG 0.544627 3:-80819172 None:intergenic
GGTAGATCCTAATGAACCAT+TGG 0.546664 3:+80818282 MsG0380016237.01.T01:CDS
TTGATGAACTCAGAGACCTC+TGG 0.548285 3:+80817593 MsG0380016237.01.T01:CDS
GATCGTGCACTTGATGAAAA+CGG 0.548765 3:+80819215 MsG0380016237.01.T01:CDS
CTTGTATCATCCGTATCCGT+TGG 0.553758 3:+80817625 MsG0380016237.01.T01:CDS
GAAAGAGATCAGCGCGTGCA+AGG 0.557629 3:-80819176 None:intergenic
TATCTACAGTTGCTTGGCTG+GGG 0.561891 3:+80818754 MsG0380016237.01.T01:intron
ATGTGGCAGCGATTGCTAAG+AGG 0.564850 3:-80817472 None:intergenic
ATGAAGGCAAACAACTGGTA+TGG 0.568177 3:-80817509 None:intergenic
TTCAAGAGAAGCTTATCCAA+TGG 0.569256 3:-80818298 None:intergenic
GTGAACCCTTCAGCAGAGGA+TGG 0.571739 3:-80813708 None:intergenic
TTTGGGGTGAAGGTCCACTA+GGG 0.571817 3:+80816788 MsG0380016237.01.T01:CDS
TCGTGTTTATTTCCAGTTTG+GGG 0.573357 3:+80816772 MsG0380016237.01.T01:CDS
AATGATCCATCCTCTGCTGA+AGG 0.574643 3:+80813702 MsG0380016237.01.T01:CDS
ACAAGTGAGGAGGTGTATGT+AGG 0.576883 3:+80819650 MsG0380016237.01.T01:three_prime_UTR
AAATTTAAAGGCTTCCTCAA+AGG 0.579236 3:+80813842 MsG0380016237.01.T01:CDS
TGCTCTCGCAAATCAGCTTG+AGG 0.581392 3:+80818170 MsG0380016237.01.T01:CDS
CCAAGGTTAAGTTCTGTGCA+TGG 0.583634 3:+80819458 MsG0380016237.01.T01:CDS
ATCCAGAGAATTTCGCACAA+TGG 0.587069 3:+80818201 MsG0380016237.01.T01:CDS
GAATGTGATATGAGATGTAA+CGG 0.587155 3:+80819398 MsG0380016237.01.T01:CDS
CAGGGTGGAATTATTCTCCA+AGG 0.588521 3:+80819441 MsG0380016237.01.T01:CDS
ATGGTTAGTGTCCACAAGTG+AGG 0.590975 3:+80819637 MsG0380016237.01.T01:three_prime_UTR
AGTTCTTCAGAAGATGATCA+TGG 0.591447 3:-80819499 None:intergenic
GTGCAGTATTCAGAACAAGA+TGG 0.594339 3:+80813645 MsG0380016237.01.T01:CDS
CCATGCACAGAACTTAACCT+TGG 0.595101 3:-80819458 None:intergenic
TGGCAACATACAACACATGA+AGG 0.596405 3:-80817525 None:intergenic
AATTAAAGGCGGTCATACAA+AGG 0.603400 3:-80819911 None:intergenic
ACAAAGTGAACAAATTTCGA+GGG 0.604626 3:+80818261 MsG0380016237.01.T01:CDS
AAATTCATGACAATATCTCA+TGG 0.611661 3:+80817915 MsG0380016237.01.T01:CDS
AACAGTGAACCCTTCAGCAG+AGG 0.614716 3:-80813712 None:intergenic
ATGATCCATCCTCTGCTGAA+GGG 0.615782 3:+80813703 MsG0380016237.01.T01:CDS
TGAGAAGAATCTATATGGCA+AGG 0.622563 3:+80818837 MsG0380016237.01.T01:CDS
AGCAGTTACCCCAACCAAAG+TGG 0.622897 3:-80817545 None:intergenic
CTTCTGAAGAACTCAGAATG+TGG 0.624150 3:+80819509 MsG0380016237.01.T01:CDS
AAAACTCTAGACCTAAGAAG+TGG 0.624354 3:-80819827 None:intergenic
CCAGCAGCACCTACAATCCA+GGG 0.628273 3:-80817071 None:intergenic
CGACGATATGACTCTCGTAC+CGG 0.639909 3:+80813798 MsG0380016237.01.T01:CDS
AACAGCAAACCAAACCCTAG+TGG 0.642601 3:-80816802 None:intergenic
GAACTCAGAGACCTCTGGCG+AGG 0.644619 3:+80817598 MsG0380016237.01.T01:CDS
GCTGCCACATGTCAGTTCAG+TGG 0.646737 3:+80817485 MsG0380016237.01.T01:CDS
GTTAGTGTCCACAAGTGAGG+AGG 0.649495 3:+80819640 MsG0380016237.01.T01:three_prime_UTR
AAAAGGAATGATCTGATCAG+CGG 0.662063 3:-80817029 None:intergenic
ATACAAGTATTCCTCGCCAG+AGG 0.663000 3:-80817609 None:intergenic
TTTGGGCATACCTGATAGTG+GGG 0.663068 3:+80818231 MsG0380016237.01.T01:CDS
CCAAGTACCAAGTCATGAGT+CGG 0.667900 3:-80819540 None:intergenic
AAGCTGATTTGCGAGAGCAG+CGG 0.669302 3:-80818166 None:intergenic
CTTCTTCCTGAAGTTCCAGG+AGG 0.685626 3:+80819376 MsG0380016237.01.T01:CDS
ACGAGCTTGAGCAAATGACA+GGG 0.717234 3:+80819423 MsG0380016237.01.T01:CDS
AGCTTGAGCAAATGACAGGG+TGG 0.719805 3:+80819426 MsG0380016237.01.T01:CDS
TGGTCCACTGAACTGACATG+TGG 0.760232 3:-80817489 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAA+TGG + Chr3:80815036-80815055 MsG0380016237.01.T01:intron 0.0%
!! AAAAAAAAAAAAAAAACAGT+AGG - Chr3:80817986-80818005 None:intergenic 10.0%
!! AAAACAAATTAAATAATGTA+CGG + Chr3:80815403-80815422 MsG0380016237.01.T01:intron 10.0%
!! AATCTATATTATATATACTT+TGG - Chr3:80814945-80814964 None:intergenic 10.0%
!! ATATATTTACAATTAAACTT+TGG - Chr3:80814188-80814207 None:intergenic 10.0%
!! CGATAATAATAAAAATTTAA+AGG + Chr3:80813830-80813849 MsG0380016237.01.T01:CDS 10.0%
!!! TAAATTTTTATTATTATCGT+TGG - Chr3:80813829-80813848 None:intergenic 10.0%
!! AATAATAGAAGTTTACTAAT+AGG - Chr3:80813870-80813889 None:intergenic 15.0%
!! ATCAAAGAAAAGAAAAAAAA+AGG - Chr3:80815956-80815975 None:intergenic 15.0%
!! CTTTAATCTCTAAATAAAAT+TGG + Chr3:80818582-80818601 MsG0380016237.01.T01:intron 15.0%
!! TAATCTTATTCATATTGTAT+TGG + Chr3:80816326-80816345 MsG0380016237.01.T01:intron 15.0%
!! TTAATTCAAAACAATTTGAT+GGG + Chr3:80819246-80819265 MsG0380016237.01.T01:intron 15.0%
!! TTCTCAAATCAAATTATTAT+CGG - Chr3:80816157-80816176 None:intergenic 15.0%
!!! AAATTTTGGTTTTACAATTT+TGG - Chr3:80818972-80818991 None:intergenic 15.0%
!!! AATGAATTTTTTTTTTTGAG+AGG + Chr3:80814852-80814871 MsG0380016237.01.T01:intron 15.0%
!!! ATATCAGTAATTTTCTAAAA+AGG - Chr3:80819597-80819616 None:intergenic 15.0%
!!! ATATTGTAACATATATTTTC+TGG + Chr3:80817808-80817827 MsG0380016237.01.T01:intron 15.0%
!!! ATGTATTACTGTTTTTTTAA+GGG + Chr3:80814361-80814380 MsG0380016237.01.T01:intron 15.0%
!!! CAATATAAGTGAAATTTTAA+CGG + Chr3:80814916-80814935 MsG0380016237.01.T01:intron 15.0%
!!! CAATTTTATTTAGAGATTAA+AGG - Chr3:80818584-80818603 None:intergenic 15.0%
!!! GTTTGACAATTTTTAAATAA+AGG + Chr3:80818495-80818514 MsG0380016237.01.T01:intron 15.0%
!!! TAAAAAGATTGAGAAAATTT+TGG - Chr3:80818986-80819005 None:intergenic 15.0%
!! AAAAAAAAGGTAAATCAGAA+AGG - Chr3:80815943-80815962 None:intergenic 20.0%
!! AAAAAAAGGTAAATCAGAAA+GGG - Chr3:80815942-80815961 None:intergenic 20.0%
!! AAAGAATAAGTGGAATTAAA+AGG - Chr3:80817049-80817068 None:intergenic 20.0%
!! AAGCAATTAATAAATTGTGT+TGG + Chr3:80813899-80813918 MsG0380016237.01.T01:intron 20.0%
!! AGCTTCATTAGAAATAAATA+CGG - Chr3:80817418-80817437 None:intergenic 20.0%
!! CTTAATTCAAAACAATTTGA+TGG + Chr3:80819245-80819264 MsG0380016237.01.T01:intron 20.0%
!! GAAACAGATCATAATATAAA+AGG + Chr3:80817696-80817715 MsG0380016237.01.T01:intron 20.0%
!! GTACTATAAAAGAAGTAAAA+CGG - Chr3:80814414-80814433 None:intergenic 20.0%
!! TATAAATAAGTCAGAATAGA+CGG - Chr3:80816702-80816721 None:intergenic 20.0%
!! TTACTTATACTTTGATGTTT+AGG - Chr3:80818670-80818689 None:intergenic 20.0%
!! TTATAAGCTCAACAAATTAT+AGG - Chr3:80815549-80815568 None:intergenic 20.0%
!! TTTATAAAAGCTAATCTGTT+GGG + Chr3:80814891-80814910 MsG0380016237.01.T01:intron 20.0%
!! TTTGCATTACAATGAAATAA+CGG + Chr3:80818006-80818025 MsG0380016237.01.T01:intron 20.0%
!!! AATAAAATTGGTGTTACATT+TGG + Chr3:80818594-80818613 MsG0380016237.01.T01:intron 20.0%
!!! AATGCTTATTTTAGAGAAAT+CGG - Chr3:80815255-80815274 None:intergenic 20.0%
!!! ACTTTTACTCTTATGTAAAT+AGG + Chr3:80817673-80817692 MsG0380016237.01.T01:intron 20.0%
!!! ATAATGGTTTTGCTTATTTA+AGG + Chr3:80818414-80818433 MsG0380016237.01.T01:intron 20.0%
!!! ATGAGATATATAGTATTTTG+TGG - Chr3:80814997-80815016 None:intergenic 20.0%
!!! CATCAAATTGTTTTGAATTA+AGG - Chr3:80819247-80819266 None:intergenic 20.0%
!!! CTGTTTCTATAATTAAAAAG+TGG + Chr3:80816030-80816049 MsG0380016237.01.T01:intron 20.0%
!!! CTTTTACTCTTATGTAAATA+GGG + Chr3:80817674-80817693 MsG0380016237.01.T01:intron 20.0%
!!! GATGTATTACTGTTTTTTTA+AGG + Chr3:80814360-80814379 MsG0380016237.01.T01:intron 20.0%
!!! TAATGGTTTTGCTTATTTAA+GGG + Chr3:80818415-80818434 MsG0380016237.01.T01:intron 20.0%
!!! TCATATTGTATTGGTAATAA+TGG + Chr3:80816335-80816354 MsG0380016237.01.T01:intron 20.0%
!!! TGAGATATATAGTATTTTGT+GGG - Chr3:80814996-80815015 None:intergenic 20.0%
!!! TTGTTACAATGTAATTTTAC+AGG + Chr3:80819093-80819112 MsG0380016237.01.T01:intron 20.0%
!!! TTTTATAAAAGCTAATCTGT+TGG + Chr3:80814890-80814909 MsG0380016237.01.T01:intron 20.0%
!!! TTTTGAACGAAAAAAATACA+AGG - Chr3:80818710-80818729 None:intergenic 20.0%
! AAAAAAGGTAAATCAGAAAG+GGG - Chr3:80815941-80815960 None:intergenic 25.0%
! AAAAATAAAACTGGAAGCTA+TGG - Chr3:80816909-80816928 None:intergenic 25.0%
! AAAACAATTAAATGACGTGA+TGG - Chr3:80814819-80814838 None:intergenic 25.0%
! AAATTCATGACAATATCTCA+TGG + Chr3:80817915-80817934 MsG0380016237.01.T01:CDS 25.0%
! AAGTTCAACAATGAGATTAA+GGG - Chr3:80816271-80816290 None:intergenic 25.0%
! AGTATCTTAGATTATCTCTT+GGG - Chr3:80817741-80817760 None:intergenic 25.0%
! CAAAACTAAAAGAAGAAATC+TGG - Chr3:80817954-80817973 None:intergenic 25.0%
! GTAGATATATTGCAACAATA+AGG - Chr3:80818741-80818760 None:intergenic 25.0%
! GTTAGATTAGAAAGTGAATT+AGG - Chr3:80815881-80815900 None:intergenic 25.0%
! TCAAAAAAATCAACGATAGT+TGG - Chr3:80814588-80814607 None:intergenic 25.0%
! TGAGTTAAACTCTGTATAAA+CGG + Chr3:80816055-80816074 MsG0380016237.01.T01:intron 25.0%
!! AAAGTATCTTGAAAAGTGTA+GGG - Chr3:80819805-80819824 None:intergenic 25.0%
!! AGTATGAAAAAGTATACCAA+CGG - Chr3:80817644-80817663 None:intergenic 25.0%
!! ATTGTATTGGTAATAATGGT+TGG + Chr3:80816339-80816358 MsG0380016237.01.T01:intron 25.0%
!! CTTATGTTGTCTTCTTTTAA+AGG + Chr3:80818099-80818118 MsG0380016237.01.T01:intron 25.0%
!! GCTAATCAATTCAACATTTT+TGG + Chr3:80814210-80814229 MsG0380016237.01.T01:intron 25.0%
!! TAAAGTATCTTGAAAAGTGT+AGG - Chr3:80819806-80819825 None:intergenic 25.0%
!! TAGTACTATTCTTTTTCTTC+AGG + Chr3:80814313-80814332 MsG0380016237.01.T01:intron 25.0%
!! TCTTTTATAGTACTAGTACT+TGG + Chr3:80814421-80814440 MsG0380016237.01.T01:intron 25.0%
!!! AACTATCGTTGATTTTTTTG+AGG + Chr3:80814587-80814606 MsG0380016237.01.T01:intron 25.0%
!!! AATTTCTTTACTGCTATTTC+AGG + Chr3:80816997-80817016 MsG0380016237.01.T01:intron 25.0%
!!! ACTATCGTTGATTTTTTTGA+GGG + Chr3:80814588-80814607 MsG0380016237.01.T01:intron 25.0%
!!! ATTTTCTAAAAAGGTAACTC+TGG - Chr3:80819588-80819607 None:intergenic 25.0%
!!! CAGATTTCTTCTTTTAGTTT+TGG + Chr3:80817952-80817971 MsG0380016237.01.T01:CDS 25.0%
!!! CTTTTTTCCTATTCCATTTA+TGG + Chr3:80819618-80819637 MsG0380016237.01.T01:three_prime_UTR 25.0%
!!! GCATATATGTTTTTTGATGT+CGG + Chr3:80814012-80814031 MsG0380016237.01.T01:intron 25.0%
!!! TATATTGCTTTGAGAAACAA+TGG + Chr3:80814235-80814254 MsG0380016237.01.T01:intron 25.0%
!!! TTTTGAAATCTTATTCCACA+GGG + Chr3:80818628-80818647 MsG0380016237.01.T01:intron 25.0%
AAATCAAATTATTATCGGCG+TGG - Chr3:80816152-80816171 None:intergenic 30.0%
AAATTTAAAGGCTTCCTCAA+AGG + Chr3:80813842-80813861 MsG0380016237.01.T01:CDS 30.0%
AATAAAATCCGCAATGAACA+CGG - Chr3:80815101-80815120 None:intergenic 30.0%
AATAATTGAACATAGCCAAG+TGG + Chr3:80816182-80816201 MsG0380016237.01.T01:intron 30.0%
ACAAAGTGAACAAATTTCGA+GGG + Chr3:80818261-80818280 MsG0380016237.01.T01:CDS 30.0%
ACACTAACCATAAATGGAAT+AGG - Chr3:80819628-80819647 None:intergenic 30.0%
ACTCTGTATAAACGGAAAAT+AGG + Chr3:80816063-80816082 MsG0380016237.01.T01:intron 30.0%
AGATACTTTAACCACTTCTT+AGG + Chr3:80819816-80819835 MsG0380016237.01.T01:three_prime_UTR 30.0%
AGTGATTAAATGTCAGTGTA+AGG - Chr3:80818466-80818485 None:intergenic 30.0%
AGTTCAACAATGAGATTAAG+GGG - Chr3:80816270-80816289 None:intergenic 30.0%
ATAATTAAATTCCCAACTCG+TGG + Chr3:80814714-80814733 MsG0380016237.01.T01:intron 30.0%
ATACACATTATGTATGCTTC+TGG - Chr3:80814549-80814568 None:intergenic 30.0%
ATTTGTTCTGTCAGTTGTAT+GGG + Chr3:80817871-80817890 MsG0380016237.01.T01:intron 30.0%
CAACATATTGAGTCAACAAA+AGG - Chr3:80818372-80818391 None:intergenic 30.0%
CAACCTTCTTCTATCAATTA+TGG + Chr3:80816475-80816494 MsG0380016237.01.T01:intron 30.0%
CAAGTTCAACAATGAGATTA+AGG - Chr3:80816272-80816291 None:intergenic 30.0%
CAATTAATCTCATCAATACG+AGG + Chr3:80814047-80814066 MsG0380016237.01.T01:intron 30.0%
CAGAAAAAATGGTTATGCTT+TGG + Chr3:80813966-80813985 MsG0380016237.01.T01:intron 30.0%
CTACCATAATTGATAGAAGA+AGG - Chr3:80816481-80816500 None:intergenic 30.0%
CTTACAATGGCAAACATATA+TGG - Chr3:80815148-80815167 None:intergenic 30.0%
GAATGTGATATGAGATGTAA+CGG + Chr3:80819398-80819417 MsG0380016237.01.T01:CDS 30.0%
GAGCAAAGGTTAAATTATTG+AGG - Chr3:80817851-80817870 None:intergenic 30.0%
GAGTATCTTAGATTATCTCT+TGG - Chr3:80817742-80817761 None:intergenic 30.0%
GCATACATTTATGGGAATAA+TGG + Chr3:80818398-80818417 MsG0380016237.01.T01:intron 30.0%
GGTGAGTACAAAAATAAAAC+TGG - Chr3:80816918-80816937 None:intergenic 30.0%
GTAACACAAACAAAAGCAAA+AGG - Chr3:80817123-80817142 None:intergenic 30.0%
GTTAAGCTCAAAATTCATAG+AGG - Chr3:80815919-80815938 None:intergenic 30.0%
TAATTAAATTCCCAACTCGT+GGG + Chr3:80814715-80814734 MsG0380016237.01.T01:intron 30.0%
TAGAAATAAATACGGCAACA+TGG - Chr3:80817410-80817429 None:intergenic 30.0%
TATAGAACTACTACGTCATA+AGG - Chr3:80814664-80814683 None:intergenic 30.0%
TCAAATTTGAAAAGAGCCAT+TGG + Chr3:80816639-80816658 MsG0380016237.01.T01:intron 30.0%
TCTACCTAAATTTGGAGAAT+GGG + Chr3:80813674-80813693 MsG0380016237.01.T01:CDS 30.0%
TTCGTGTTTATTTCCAGTTT+GGG + Chr3:80816771-80816790 MsG0380016237.01.T01:CDS 30.0%
TTCTCTTGAACAAGAAATTC+AGG + Chr3:80818311-80818330 MsG0380016237.01.T01:CDS 30.0%
TTGTTAACATCTGTATAGTC+AGG + Chr3:80819715-80819734 MsG0380016237.01.T01:three_prime_UTR 30.0%
TTTACTAATAGGTACCTTTG+AGG - Chr3:80813859-80813878 None:intergenic 30.0%
! AAATTCAGGCAGTCTTTTAT+GGG + Chr3:80818325-80818344 MsG0380016237.01.T01:CDS 30.0%
! AAGTTTTTCTTCCAACTGTA+GGG + Chr3:80819053-80819072 MsG0380016237.01.T01:intron 30.0%
! ATTTTCTGGATATCTCAACT+TGG + Chr3:80817822-80817841 MsG0380016237.01.T01:intron 30.0%
! GTGTTCTTTCAAAATTTTGC+TGG + Chr3:80817254-80817273 MsG0380016237.01.T01:intron 30.0%
! TATGTAACTCTTTGTTGTGT+TGG + Chr3:80818521-80818540 MsG0380016237.01.T01:intron 30.0%
! TCATTGCGGATTTTATTCAT+GGG + Chr3:80815104-80815123 MsG0380016237.01.T01:intron 30.0%
! TTAAACTTTGGATGTTGCTT+AGG - Chr3:80814176-80814195 None:intergenic 30.0%
! TTCATTGCGGATTTTATTCA+TGG + Chr3:80815103-80815122 MsG0380016237.01.T01:intron 30.0%
!! AACCAGGCTAATTTTAATCA+AGG - Chr3:80819276-80819295 None:intergenic 30.0%
!! ACCAGGCTAATTTTAATCAA+GGG - Chr3:80819275-80819294 None:intergenic 30.0%
!! TGGTTTTACAATTTTGGCAA+TGG - Chr3:80818966-80818985 None:intergenic 30.0%
!!! AGAGTTTTAAGCATACATAC+AGG + Chr3:80819842-80819861 MsG0380016237.01.T01:three_prime_UTR 30.0%
!!! CTTTTGAAATCTTATTCCAC+AGG + Chr3:80818627-80818646 MsG0380016237.01.T01:intron 30.0%
!!! CTTTTGTTGACTCAATATGT+TGG + Chr3:80818370-80818389 MsG0380016237.01.T01:intron 30.0%
AAAACTATACATCCACAACC+AGG - Chr3:80819292-80819311 None:intergenic 35.0%
AAAACTCTAGACCTAAGAAG+TGG - Chr3:80819830-80819849 None:intergenic 35.0%
AAAAGGAATGATCTGATCAG+CGG - Chr3:80817032-80817051 None:intergenic 35.0%
AACAAGGGAAAGGATGAAAA+AGG - Chr3:80818919-80818938 None:intergenic 35.0%
AACGGTCATTGTTAGTTGAT+TGG + Chr3:80818024-80818043 MsG0380016237.01.T01:intron 35.0%
AACTTATGACACATCCACTT+GGG - Chr3:80816228-80816247 None:intergenic 35.0%
AAGAAAATTGCTTCTGCATC+AGG + Chr3:80813759-80813778 MsG0380016237.01.T01:CDS 35.0%
AATCACGACCAATATCTTTC+TGG + Chr3:80814492-80814511 MsG0380016237.01.T01:intron 35.0%
AATGAAGGAGAGAATGGAAA+CGG - Chr3:80815831-80815850 None:intergenic 35.0%
AATTTATCCGTGTACTTCGA+TGG + Chr3:80817177-80817196 MsG0380016237.01.T01:intron 35.0%
AATTTGAAAAGAGCCATTGG+TGG + Chr3:80816642-80816661 MsG0380016237.01.T01:intron 35.0%
ACATCCCATTCTCCAAATTT+AGG - Chr3:80813681-80813700 None:intergenic 35.0%
AGAACTTGGCAAAAGATTAC+TGG + Chr3:80819345-80819364 MsG0380016237.01.T01:intron 35.0%
AGAAGATGATCATGGTGAAA+AGG - Chr3:80819494-80819513 None:intergenic 35.0%
AGATTCAGTTTCTGTTCATC+AGG - Chr3:80815721-80815740 None:intergenic 35.0%
AGCTAAGCATGATAACAAAC+AGG - Chr3:80816582-80816601 None:intergenic 35.0%
AGCTTATCCAATGGTTCATT+AGG - Chr3:80818292-80818311 None:intergenic 35.0%
AGTGACTACTTGATATTCAG+TGG + Chr3:80816876-80816895 MsG0380016237.01.T01:intron 35.0%
AGTTCTTCAGAAGATGATCA+TGG - Chr3:80819502-80819521 None:intergenic 35.0%
ATGTAGGAAGGAAGACAAAA+AGG + Chr3:80819666-80819685 MsG0380016237.01.T01:three_prime_UTR 35.0%
ATTTCCCTTCATAGTTCACA+AGG + Chr3:80816394-80816413 MsG0380016237.01.T01:intron 35.0%
CAAAAAACCATCGAAGTACA+CGG - Chr3:80817187-80817206 None:intergenic 35.0%
CAATGGCAAACATATATGGA+TGG - Chr3:80815144-80815163 None:intergenic 35.0%
CACAAAGTGAACAAATTTCG+AGG + Chr3:80818260-80818279 MsG0380016237.01.T01:CDS 35.0%
CATTCTCCAAATTTAGGTAG+AGG - Chr3:80813675-80813694 None:intergenic 35.0%
CATTTGTTCTGTCAGTTGTA+TGG + Chr3:80817870-80817889 MsG0380016237.01.T01:intron 35.0%
CTAAAAAGGTAACTCTGGTT+TGG - Chr3:80819583-80819602 None:intergenic 35.0%
CTACTTGATATTCAGTGGTT+AGG + Chr3:80816881-80816900 MsG0380016237.01.T01:intron 35.0%
CTCTACCTAAATTTGGAGAA+TGG + Chr3:80813673-80813692 MsG0380016237.01.T01:CDS 35.0%
CTGGGTGATTTATTTGCAAT+TGG + Chr3:80813934-80813953 MsG0380016237.01.T01:intron 35.0%
CTTCAAAACAATTACCCAAG+TGG + Chr3:80816211-80816230 MsG0380016237.01.T01:intron 35.0%
CTTCGTGTTTATTTCCAGTT+TGG + Chr3:80816770-80816789 MsG0380016237.01.T01:CDS 35.0%
GCAATATATCTACAGTTGCT+TGG + Chr3:80818748-80818767 MsG0380016237.01.T01:intron 35.0%
GCTAAGCATGATAACAAACA+GGG - Chr3:80816581-80816600 None:intergenic 35.0%
GCTAGTATCATGTACATCTT+GGG + Chr3:80819737-80819756 MsG0380016237.01.T01:three_prime_UTR 35.0%
GGCTTCTTTATATGGATAAC+TGG - Chr3:80817454-80817473 None:intergenic 35.0%
GTAACAGCTACATAATCTGT+GGG - Chr3:80815809-80815828 None:intergenic 35.0%
GTTCAACAATGAGATTAAGG+GGG - Chr3:80816269-80816288 None:intergenic 35.0%
TACTAGTACTTGGTACGATA+TGG + Chr3:80814431-80814450 MsG0380016237.01.T01:intron 35.0%
TATCTTTCAGGCTTCTCATA+TGG + Chr3:80816366-80816385 MsG0380016237.01.T01:intron 35.0%
TCCCTTGATTAAAATTAGCC+TGG + Chr3:80819271-80819290 MsG0380016237.01.T01:intron 35.0%
TCGTGTTTATTTCCAGTTTG+GGG + Chr3:80816772-80816791 MsG0380016237.01.T01:CDS 35.0%
TCGTTGAACCAGAAAGATAT+TGG - Chr3:80814503-80814522 None:intergenic 35.0%
TGAGAAGAATCTATATGGCA+AGG + Chr3:80818837-80818856 MsG0380016237.01.T01:CDS 35.0%
TGCTAAGAGGCTTCTTTATA+TGG - Chr3:80817462-80817481 None:intergenic 35.0%
TGGTTCAACGAAGACAAAAT+GGG + Chr3:80814512-80814531 MsG0380016237.01.T01:intron 35.0%
TGTAGGAAGGAAGACAAAAA+GGG + Chr3:80819667-80819686 MsG0380016237.01.T01:three_prime_UTR 35.0%
TTACAGAATGAAGGAGAGAA+TGG - Chr3:80815837-80815856 None:intergenic 35.0%
TTAGAATTCGCAACATCTTG+TGG + Chr3:80817336-80817355 MsG0380016237.01.T01:intron 35.0%
TTCAAGAGAAGCTTATCCAA+TGG - Chr3:80818301-80818320 None:intergenic 35.0%
TTGACTCAATATGTTGGCAT+TGG + Chr3:80818376-80818395 MsG0380016237.01.T01:intron 35.0%
TTGTGGACACTAACCATAAA+TGG - Chr3:80819634-80819653 None:intergenic 35.0%
! AAATCATCGGTGTAGCTTTT+AGG + Chr3:80814115-80814134 MsG0380016237.01.T01:intron 35.0%
! AGCAATTTTCTTGTCATCTC+TGG - Chr3:80813751-80813770 None:intergenic 35.0%
! AGTAATCTTTTGCCAAGTTC+TGG - Chr3:80819346-80819365 None:intergenic 35.0%
! ATTGAGAAGTACATAGTTGC+AGG + Chr3:80818866-80818885 MsG0380016237.01.T01:CDS 35.0%
! CAAGTTTTTCTTCCAACTGT+AGG + Chr3:80819052-80819071 MsG0380016237.01.T01:intron 35.0%
! GAAATTCAGGCAGTCTTTTA+TGG + Chr3:80818324-80818343 MsG0380016237.01.T01:CDS 35.0%
! GATTAAAATTAGCCTGGTTG+TGG + Chr3:80819277-80819296 MsG0380016237.01.T01:intron 35.0%
! GTAATCTTTTGCCAAGTTCT+GGG - Chr3:80819345-80819364 None:intergenic 35.0%
! TAATCTTTTGCCAAGTTCTG+GGG - Chr3:80819344-80819363 None:intergenic 35.0%
! TAATTTTACAGGTGCAGCTA+TGG + Chr3:80819104-80819123 MsG0380016237.01.T01:intron 35.0%
! TCTTTTTGAACGCTACTGTT+AGG + Chr3:80815585-80815604 MsG0380016237.01.T01:intron 35.0%
! TTAGCACTTGTTAAGCAGTA+GGG - Chr3:80816939-80816958 None:intergenic 35.0%
! TTGTGATTGGTTGTTTACTC+TGG + Chr3:80818548-80818567 MsG0380016237.01.T01:intron 35.0%
! TTTAGCACTTGTTAAGCAGT+AGG - Chr3:80816940-80816959 None:intergenic 35.0%
!! GGTTTTGTGTGCAGAAAAAA+TGG + Chr3:80813955-80813974 MsG0380016237.01.T01:intron 35.0%
!! TGGCATTGGCATACATTTAT+GGG + Chr3:80818390-80818409 MsG0380016237.01.T01:intron 35.0%
!! TGTTGGTTTATTGTGAAGCT+GGG + Chr3:80813916-80813935 MsG0380016237.01.T01:intron 35.0%
!! TTCTTTACTGCTATTTCAGG+AGG + Chr3:80817000-80817019 MsG0380016237.01.T01:intron 35.0%
!! TTGGCATTGGCATACATTTA+TGG + Chr3:80818389-80818408 MsG0380016237.01.T01:intron 35.0%
!!! AGGTGTTGATTTTATGCATC+AGG + Chr3:80814135-80814154 MsG0380016237.01.T01:intron 35.0%
!!! CTTTTATGGGATTTGCTGAT+AGG + Chr3:80818338-80818357 MsG0380016237.01.T01:CDS 35.0%
AAAGGCTAGCATACTTGTGT+TGG + Chr3:80818117-80818136 MsG0380016237.01.T01:intron 40.0%
AAAGGGGGAGAAACAAAGAA+TGG + Chr3:80814071-80814090 MsG0380016237.01.T01:intron 40.0%
AACACATGAAGGCAAACAAC+TGG - Chr3:80817517-80817536 None:intergenic 40.0%
AAGTCTCATAGAGGAGAACA+AGG - Chr3:80818935-80818954 None:intergenic 40.0%
AATCTTATTCCACAGGGTCT+TGG + Chr3:80818634-80818653 MsG0380016237.01.T01:intron 40.0%
AATCTTCTTCCTGAAGTTCC+AGG + Chr3:80819373-80819392 MsG0380016237.01.T01:CDS 40.0%
ACAATGAGATTAAGGGGGTT+TGG - Chr3:80816264-80816283 None:intergenic 40.0%
ACGTCATAAGGTCATGCATA+TGG - Chr3:80814652-80814671 None:intergenic 40.0%
AGGAACCTTGTGAACTATGA+AGG - Chr3:80816402-80816421 None:intergenic 40.0%
AGTCTCATAGAGGAGAACAA+GGG - Chr3:80818934-80818953 None:intergenic 40.0%
ATATCTACAGTTGCTTGGCT+GGG + Chr3:80818753-80818772 MsG0380016237.01.T01:intron 40.0%
ATCCAGAGAATTTCGCACAA+TGG + Chr3:80818201-80818220 MsG0380016237.01.T01:CDS 40.0%
ATCCAGGGCAAAAGAATAAG+TGG - Chr3:80817059-80817078 None:intergenic 40.0%
ATCTCATATCACATTCCTCC+TGG - Chr3:80819394-80819413 None:intergenic 40.0%
ATCTCATCAATACGAGGCAA+AGG + Chr3:80814053-80814072 MsG0380016237.01.T01:intron 40.0%
ATGAAGGCAAACAACTGGTA+TGG - Chr3:80817512-80817531 None:intergenic 40.0%
ATTATTATCGTTGGTGCGAC+CGG - Chr3:80813820-80813839 None:intergenic 40.0%
CAACTTAAGCTAGGCAAAAG+GGG - Chr3:80817387-80817406 None:intergenic 40.0%
CAACTTATGACACATCCACT+TGG - Chr3:80816229-80816248 None:intergenic 40.0%
CATCTCTCATAGAAGCAAAC+AGG + Chr3:80819134-80819153 MsG0380016237.01.T01:CDS 40.0%
CATTAGAGAGTTTCCGAACA+GGG - Chr3:80815194-80815213 None:intergenic 40.0%
CTGACAGAACAAATGAGCAA+AGG - Chr3:80817865-80817884 None:intergenic 40.0%
CTGCGTGAGAAGAATCTATA+TGG + Chr3:80818832-80818851 MsG0380016237.01.T01:CDS 40.0%
CTGGCAACAACTTGAATTAC+AGG - Chr3:80816452-80816471 None:intergenic 40.0%
CTGGTTCAACGAAGACAAAA+TGG + Chr3:80814511-80814530 MsG0380016237.01.T01:intron 40.0%
CTGTGCATCATATAGAGTTC+AGG + Chr3:80817569-80817588 MsG0380016237.01.T01:CDS 40.0%
GAGAGAAGCTTACAGAATGA+AGG - Chr3:80815846-80815865 None:intergenic 40.0%
GAGTGTAGACACTCTTACAA+TGG - Chr3:80815161-80815180 None:intergenic 40.0%
GATCGTGCACTTGATGAAAA+CGG + Chr3:80819215-80819234 MsG0380016237.01.T01:CDS 40.0%
GCAAAAGCAAAGTCTCATAG+AGG - Chr3:80818944-80818963 None:intergenic 40.0%
GCAACTTAAGCTAGGCAAAA+GGG - Chr3:80817388-80817407 None:intergenic 40.0%
GGAAAGCCTCTACCTAAATT+TGG + Chr3:80813666-80813685 MsG0380016237.01.T01:CDS 40.0%
GGAACCTTGTGAACTATGAA+GGG - Chr3:80816401-80816420 None:intergenic 40.0%
GGCTAGTATCATGTACATCT+TGG + Chr3:80819736-80819755 MsG0380016237.01.T01:three_prime_UTR 40.0%
GGTAACAGCTACATAATCTG+TGG - Chr3:80815810-80815829 None:intergenic 40.0%
GGTAGATCCTAATGAACCAT+TGG + Chr3:80818282-80818301 MsG0380016237.01.T01:CDS 40.0%
GTCATACAAAGGACGTTGTT+AGG - Chr3:80819903-80819922 None:intergenic 40.0%
GTGCAGTATTCAGAACAAGA+TGG + Chr3:80813645-80813664 MsG0380016237.01.T01:CDS 40.0%
TATATCTACAGTTGCTTGGC+TGG + Chr3:80818752-80818771 MsG0380016237.01.T01:intron 40.0%
TCATTAGAGAGTTTCCGAAC+AGG - Chr3:80815195-80815214 None:intergenic 40.0%
TCCAGAGAATTTCGCACAAT+GGG + Chr3:80818202-80818221 MsG0380016237.01.T01:CDS 40.0%
TCTCATCAATACGAGGCAAA+GGG + Chr3:80814054-80814073 MsG0380016237.01.T01:intron 40.0%
TGATAGAAGAAGGTTGAAGC+TGG - Chr3:80816471-80816490 None:intergenic 40.0%
TGGCAACATACAACACATGA+AGG - Chr3:80817528-80817547 None:intergenic 40.0%
TGTGATAATACCCCACTATC+AGG - Chr3:80818244-80818263 None:intergenic 40.0%
TGTGTCTGGTGTAGATAACT+AGG - Chr3:80816120-80816139 None:intergenic 40.0%
TGTTCGGAAACTCTCTAATG+AGG + Chr3:80815194-80815213 MsG0380016237.01.T01:intron 40.0%
TTCTGGATATCTCAACTTGG+TGG + Chr3:80817825-80817844 MsG0380016237.01.T01:intron 40.0%
TTGTACCTGAGTCAGATGAA+TGG + Chr3:80815751-80815770 MsG0380016237.01.T01:intron 40.0%
! AGAAGTACATAGTTGCAGGT+TGG + Chr3:80818870-80818889 MsG0380016237.01.T01:intron 40.0%
! ATTCTTTTGCCCTGGATTGT+AGG + Chr3:80817062-80817081 MsG0380016237.01.T01:CDS 40.0%
! CTTCTGAAGAACTCAGAATG+TGG + Chr3:80819509-80819528 MsG0380016237.01.T01:CDS 40.0%
! GTTCAGCTTGCTCAAATCAT+CGG + Chr3:80814102-80814121 MsG0380016237.01.T01:intron 40.0%
! TGTGTTGTATGTTGCCACTT+TGG + Chr3:80817531-80817550 MsG0380016237.01.T01:CDS 40.0%
! TTATTTCCAGTTTGGGGTGA+AGG + Chr3:80816778-80816797 MsG0380016237.01.T01:CDS 40.0%
! TTCCACTTATTCTTTTGCCC+TGG + Chr3:80817054-80817073 MsG0380016237.01.T01:CDS 40.0%
!! AATGATACCGACTCATGACT+TGG + Chr3:80819533-80819552 MsG0380016237.01.T01:exon 40.0%
!! ATGGTTGGCTTCTATCTTTC+AGG + Chr3:80816354-80816373 MsG0380016237.01.T01:intron 40.0%
!! GTGTTGGTTTATTGTGAAGC+TGG + Chr3:80813915-80813934 MsG0380016237.01.T01:intron 40.0%
!! TGTATGTTGCCACTTTGGTT+GGG + Chr3:80817536-80817555 MsG0380016237.01.T01:CDS 40.0%
!! TTGTATGTTGCCACTTTGGT+TGG + Chr3:80817535-80817554 MsG0380016237.01.T01:CDS 40.0%
!!! GTTTTGAAGAGCTTACCACT+TGG - Chr3:80816200-80816219 None:intergenic 40.0%
AAACCACTGCCTTTAGTACG+AGG - Chr3:80816422-80816441 None:intergenic 45.0%
AACAGCAAACCAAACCCTAG+TGG - Chr3:80816805-80816824 None:intergenic 45.0%
AATGATCCATCCTCTGCTGA+AGG + Chr3:80813702-80813721 MsG0380016237.01.T01:CDS 45.0%
ACGAGCTTGAGCAAATGACA+GGG + Chr3:80819423-80819442 MsG0380016237.01.T01:CDS 45.0%
AGTAACATGACTGCCACCAA+TGG - Chr3:80816658-80816677 None:intergenic 45.0%
AGTCAGAATAGACGGCAAGA+AGG - Chr3:80816694-80816713 None:intergenic 45.0%
ATACAAGTATTCCTCGCCAG+AGG - Chr3:80817612-80817631 None:intergenic 45.0%
ATGATCCATCCTCTGCTGAA+GGG + Chr3:80813703-80813722 MsG0380016237.01.T01:CDS 45.0%
ATGGTTAGTGTCCACAAGTG+AGG + Chr3:80819637-80819656 MsG0380016237.01.T01:three_prime_UTR 45.0%
CACAAGGTTCCTCGTACTAA+AGG + Chr3:80816410-80816429 MsG0380016237.01.T01:intron 45.0%
CAGGGTGGAATTATTCTCCA+AGG + Chr3:80819441-80819460 MsG0380016237.01.T01:CDS 45.0%
CATAGAGGAGAACAAGGGAA+AGG - Chr3:80818929-80818948 None:intergenic 45.0%
CCAAGGTTAAGTTCTGTGCA+TGG + Chr3:80819458-80819477 MsG0380016237.01.T01:CDS 45.0%
CCAAGTACCAAGTCATGAGT+CGG - Chr3:80819543-80819562 None:intergenic 45.0%
CCATGCACAGAACTTAACCT+TGG - Chr3:80819461-80819480 None:intergenic 45.0%
CTCACCATAGTATCCCTGTT+CGG + Chr3:80815178-80815197 MsG0380016237.01.T01:intron 45.0%
CTCATCAATACGAGGCAAAG+GGG + Chr3:80814055-80814074 MsG0380016237.01.T01:intron 45.0%
CTTTGGGCATACCTGATAGT+GGG + Chr3:80818230-80818249 MsG0380016237.01.T01:CDS 45.0%
GAGGGATTTACAGCACTTGT+TGG + Chr3:80814606-80814625 MsG0380016237.01.T01:intron 45.0%
GAGTCATATCGTCGTTGTGA+AGG - Chr3:80813792-80813811 None:intergenic 45.0%
GCAACATGGCAACTTAAGCT+AGG - Chr3:80817396-80817415 None:intergenic 45.0%
GGCAACTTAAGCTAGGCAAA+AGG - Chr3:80817389-80817408 None:intergenic 45.0%
GTACTAAAGGCAGTGGTTTC+TGG + Chr3:80816423-80816442 MsG0380016237.01.T01:intron 45.0%
GTTTCCGAACAGGGATACTA+TGG - Chr3:80815185-80815204 None:intergenic 45.0%
TACATACACCTCCTCACTTG+TGG - Chr3:80819651-80819670 None:intergenic 45.0%
TACGAGCTTGAGCAAATGAC+AGG + Chr3:80819422-80819441 MsG0380016237.01.T01:CDS 45.0%
TATCTACAGTTGCTTGGCTG+GGG + Chr3:80818754-80818773 MsG0380016237.01.T01:intron 45.0%
TCATCAATACGAGGCAAAGG+GGG + Chr3:80814056-80814075 MsG0380016237.01.T01:intron 45.0%
TCTTCTCACGCAGTCATGTT+CGG - Chr3:80818825-80818844 None:intergenic 45.0%
TTCAGCGCACAATTGACAAG+TGG - Chr3:80816974-80816993 None:intergenic 45.0%
TTGATGAACTCAGAGACCTC+TGG + Chr3:80817593-80817612 MsG0380016237.01.T01:CDS 45.0%
! ACAAGTGAGGAGGTGTATGT+AGG + Chr3:80819650-80819669 MsG0380016237.01.T01:three_prime_UTR 45.0%
! AGTTTCAAGTGTGCCGTCAA+AGG + Chr3:80815776-80815795 MsG0380016237.01.T01:intron 45.0%
! GTGGCAGTCATGTTACTTGT+GGG + Chr3:80816661-80816680 MsG0380016237.01.T01:intron 45.0%
! GTGTGAATCAAAAGAGCACG+TGG + Chr3:80815617-80815636 MsG0380016237.01.T01:intron 45.0%
! TTGTGTTGGCGAGTTGTGAT+TGG + Chr3:80818535-80818554 MsG0380016237.01.T01:intron 45.0%
! TTTGGGCATACCTGATAGTG+GGG + Chr3:80818231-80818250 MsG0380016237.01.T01:CDS 45.0%
!! ACGTGGAAGTGTTGTTGACT+AGG + Chr3:80815634-80815653 MsG0380016237.01.T01:intron 45.0%
!! CATAGTTGCAGGTTGGTACT+TGG + Chr3:80818877-80818896 MsG0380016237.01.T01:intron 45.0%
!! GTATGTTGCCACTTTGGTTG+GGG + Chr3:80817537-80817556 MsG0380016237.01.T01:CDS 45.0%
AACACCATGCACCCTACAGT+TGG - Chr3:80819067-80819086 None:intergenic 50.0%
AACAGTGAACCCTTCAGCAG+AGG - Chr3:80813715-80813734 None:intergenic 50.0%
AATCCGCAATGAACACGGAG+CGG - Chr3:80815096-80815115 None:intergenic 50.0%
ACTCGCCATTCATCTGACTC+AGG - Chr3:80815759-80815778 None:intergenic 50.0%
AGAATTTCGCACAATGGGCC+AGG + Chr3:80818207-80818226 MsG0380016237.01.T01:CDS 50.0%
AGCAGTTACCCCAACCAAAG+TGG - Chr3:80817548-80817567 None:intergenic 50.0%
AGCTTGAGCAAATGACAGGG+TGG + Chr3:80819426-80819445 MsG0380016237.01.T01:CDS 50.0%
ATGTGGCAGCGATTGCTAAG+AGG - Chr3:80817475-80817494 None:intergenic 50.0%
CACATTCCTCCTGGAACTTC+AGG - Chr3:80819385-80819404 None:intergenic 50.0%
CATCTAGAAGCCCACGAGTT+GGG - Chr3:80814728-80814747 None:intergenic 50.0%
CCAAAACATCCAAGACCCTG+TGG - Chr3:80818646-80818665 None:intergenic 50.0%
CGACGATATGACTCTCGTAC+CGG + Chr3:80813798-80813817 MsG0380016237.01.T01:CDS 50.0%
CTTCTTCCTGAAGTTCCAGG+AGG + Chr3:80819376-80819395 MsG0380016237.01.T01:CDS 50.0%
GCCCATTGTGCGAAATTCTC+TGG - Chr3:80818206-80818225 None:intergenic 50.0%
GCGCACAATTGACAAGTGGA+CGG - Chr3:80816970-80816989 None:intergenic 50.0%
GTTAGTGTCCACAAGTGAGG+AGG + Chr3:80819640-80819659 MsG0380016237.01.T01:three_prime_UTR 50.0%
GTTCCTCGTACTAAAGGCAG+TGG + Chr3:80816416-80816435 MsG0380016237.01.T01:intron 50.0%
TATCAGGTATGCCCAAAGCC+TGG - Chr3:80818228-80818247 None:intergenic 50.0%
TATCCGCTCCGTGTTCATTG+CGG + Chr3:80815090-80815109 MsG0380016237.01.T01:intron 50.0%
TCATCTAGAAGCCCACGAGT+TGG - Chr3:80814729-80814748 None:intergenic 50.0%
TCTTCCAACTGTAGGGTGCA+TGG + Chr3:80819060-80819079 MsG0380016237.01.T01:intron 50.0%
TGCTCTCGCAAATCAGCTTG+AGG + Chr3:80818170-80818189 MsG0380016237.01.T01:CDS 50.0%
TGGTCCACTGAACTGACATG+TGG - Chr3:80817492-80817511 None:intergenic 50.0%
TTCAAGTGTGCCGTCAAAGG+TGG + Chr3:80815779-80815798 MsG0380016237.01.T01:intron 50.0%
! CAGTCATGTTACTTGTGGGC+AGG + Chr3:80816665-80816684 MsG0380016237.01.T01:intron 50.0%
! CCACAGGGTCTTGGATGTTT+TGG + Chr3:80818643-80818662 MsG0380016237.01.T01:intron 50.0%
! CGTGGTGTCAGTATTGTGTC+TGG - Chr3:80816134-80816153 None:intergenic 50.0%
! GCTTTGGGCATACCTGATAG+TGG + Chr3:80818229-80818248 MsG0380016237.01.T01:CDS 50.0%
! GGTGGCAGTCATGTTACTTG+TGG + Chr3:80816660-80816679 MsG0380016237.01.T01:intron 50.0%
! GTGAGGAGGTGTATGTAGGA+AGG + Chr3:80819654-80819673 MsG0380016237.01.T01:three_prime_UTR 50.0%
! TTTGGGGTGAAGGTCCACTA+GGG + Chr3:80816788-80816807 MsG0380016237.01.T01:CDS 50.0%
!! AAGCTGATTTGCGAGAGCAG+CGG - Chr3:80818169-80818188 None:intergenic 50.0%
!! CCGACTCATGACTTGGTACT+TGG + Chr3:80819540-80819559 MsG0380016237.01.T01:exon 50.0%
!!! TCTTTTGCCAAGTTCTGGGG+AGG - Chr3:80819341-80819360 None:intergenic 50.0%
ACCAGCAGCACCTACAATCC+AGG - Chr3:80817075-80817094 None:intergenic 55.0%
AGTGGACCTTCACCCCAAAC+TGG - Chr3:80816787-80816806 None:intergenic 55.0%
CCAGCAGCACCTACAATCCA+GGG - Chr3:80817074-80817093 None:intergenic 55.0%
CCATTCACCTCCCCAGAACT+TGG + Chr3:80819331-80819350 MsG0380016237.01.T01:intron 55.0%
GAAAGAGATCAGCGCGTGCA+AGG - Chr3:80819179-80819198 None:intergenic 55.0%
GCTGCCACATGTCAGTTCAG+TGG + Chr3:80817485-80817504 MsG0380016237.01.T01:CDS 55.0%
GGTGAAGGTCCACTAGGGTT+TGG + Chr3:80816793-80816812 MsG0380016237.01.T01:CDS 55.0%
GTGAACCCTTCAGCAGAGGA+TGG - Chr3:80813711-80813730 None:intergenic 55.0%
TGTGGGACAGCCACCTTTGA+CGG - Chr3:80815792-80815811 None:intergenic 55.0%
! GTTTGGGGTGAAGGTCCACT+AGG + Chr3:80816787-80816806 MsG0380016237.01.T01:CDS 55.0%
!! CCAAGTTCTGGGGAGGTGAA+TGG - Chr3:80819334-80819353 None:intergenic 55.0%
CGCACAATGGGCCAGGCTTT+GGG + Chr3:80818214-80818233 MsG0380016237.01.T01:CDS 60.0%
GAACTCAGAGACCTCTGGCG+AGG + Chr3:80817598-80817617 MsG0380016237.01.T01:CDS 60.0%
GAGATCAGCGCGTGCAAGGT+CGG - Chr3:80819175-80819194 None:intergenic 60.0%
TCGCACAATGGGCCAGGCTT+TGG + Chr3:80818213-80818232 MsG0380016237.01.T01:CDS 60.0%
! CCCTGGATTGTAGGTGCTGC+TGG + Chr3:80817071-80817090 MsG0380016237.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 80813639 80819925 80813639 ID=MsG0380016237.01;Name=MsG0380016237.01
Chr3 mRNA 80813639 80819925 80813639 ID=MsG0380016237.01.T01;Parent=MsG0380016237.01;Name=MsG0380016237.01.T01;_AED=0.48;_eAED=0.48;_QI=0|0.87|0.77|1|1|1|9|375|460
Chr3 exon 80813639 80813863 80813639 ID=MsG0380016237.01.T01:exon:13662;Parent=MsG0380016237.01.T01
Chr3 exon 80816760 80816872 80816760 ID=MsG0380016237.01.T01:exon:13663;Parent=MsG0380016237.01.T01
Chr3 exon 80817019 80817092 80817019 ID=MsG0380016237.01.T01:exon:13664;Parent=MsG0380016237.01.T01
Chr3 exon 80817455 80817646 80817455 ID=MsG0380016237.01.T01:exon:13665;Parent=MsG0380016237.01.T01
Chr3 exon 80817885 80817973 80817885 ID=MsG0380016237.01.T01:exon:13666;Parent=MsG0380016237.01.T01
Chr3 exon 80818121 80818359 80818121 ID=MsG0380016237.01.T01:exon:13667;Parent=MsG0380016237.01.T01
Chr3 exon 80818763 80818887 80818763 ID=MsG0380016237.01.T01:exon:13668;Parent=MsG0380016237.01.T01
Chr3 exon 80819115 80819236 80819115 ID=MsG0380016237.01.T01:exon:13669;Parent=MsG0380016237.01.T01
Chr3 exon 80819347 80819925 80819347 ID=MsG0380016237.01.T01:exon:13670;Parent=MsG0380016237.01.T01
Chr3 CDS 80813639 80813863 80813639 ID=MsG0380016237.01.T01:cds;Parent=MsG0380016237.01.T01
Chr3 CDS 80816760 80816872 80816760 ID=MsG0380016237.01.T01:cds;Parent=MsG0380016237.01.T01
Chr3 CDS 80817019 80817092 80817019 ID=MsG0380016237.01.T01:cds;Parent=MsG0380016237.01.T01
Chr3 CDS 80817455 80817646 80817455 ID=MsG0380016237.01.T01:cds;Parent=MsG0380016237.01.T01
Chr3 CDS 80817885 80817973 80817885 ID=MsG0380016237.01.T01:cds;Parent=MsG0380016237.01.T01
Chr3 CDS 80818121 80818359 80818121 ID=MsG0380016237.01.T01:cds;Parent=MsG0380016237.01.T01
Chr3 CDS 80818763 80818887 80818763 ID=MsG0380016237.01.T01:cds;Parent=MsG0380016237.01.T01
Chr3 CDS 80819115 80819236 80819115 ID=MsG0380016237.01.T01:cds;Parent=MsG0380016237.01.T01
Chr3 CDS 80819347 80819550 80819347 ID=MsG0380016237.01.T01:cds;Parent=MsG0380016237.01.T01
Chr3 three_prime_UTR 80819551 80819925 80819551 ID=MsG0380016237.01.T01:three_prime_utr;Parent=MsG0380016237.01.T01
Gene Sequence

>MsG0380016237.01.T01

ATGTATGTGCAGTATTCAGAACAAGATGGAAAGCCTCTACCTAAATTTGGAGAATGGGATGTAAATGATCCATCCTCTGCTGAAGGGTTCACTGTTATATTCAACAAAGCCAGAGATGACAAGAAAATTGCTTCTGCATCAGGAAGATTTCCTTCACAACGACGATATGACTCTCGTACCGGTCGCACCAACGATAATAATAAAAATTTAAAGGCTTCCTCAAAGCATAATCATACTTCGTGTTTATTTCCAGTTTGGGGTGAAGGTCCACTAGGGTTTGGTTTGCTGTTAAGCTCTCGCATAACACAAGCATTTCAGTTGTATTTTATTTTTGTCAAGAGGCGTTTACCGCTGATCAGATCATTCCTTTTAATTCCACTTATTCTTTTGCCCTGGATTGTAGGTGCTGCTGTTATCCATATAAAGAAGCCTCTTAGCAATCGCTGCCACATGTCAGTTCAGTGGACCATACCAGTTGTTTGCCTTCATGTGTTGTATGTTGCCACTTTGGTTGGGGTAACTGCTGCTGTGCATCATATAGAGTTCAGGTTTGATGAACTCAGAGACCTCTGGCGAGGAATACTTGTATCATCCGTATCCGTTGTTGTATGGGTTACTGCTTACATACTTAATGAAATTCATGACAATATCTCATGGCTTCAAATTGTCTCCAGATTTCTTCTTTTAGTTTTGGCTAGCATACTTGTGTTGGCTTTCTTTTCAATATCAAGTTCACAACCGCTGCTCTCGCAAATCAGCTTGAGGAGAAGAGAATCCAGAGAATTTCGCACAATGGGCCAGGCTTTGGGCATACCTGATAGTGGGGTATTATCACAAAGTGAACAAATTTCGAGGGTAGATCCTAATGAACCATTGGATAAGCTTCTCTTGAACAAGAAATTCAGGCAGTCTTTTATGGGATTTGCTGATAGTTGCTTGGCTGGGGAGAGTGTGCACTTCTTTGATGAAGTGCATGAGCTAAGTAAAATATCCGAACATGACTGCGTGAGAAGAATCTATATGGCAAGGCATATTATTGAGAAGTACATAGTTGCAGGTGCAGCTATGGAGATTAACATCTCTCATAGAAGCAAACAGGAAATTTTATCAACATCCGACCTTGCACGCGCTGATCTCTTTCATAATGCACTTAATGAGATCGTGCACTTGATGAAAACGAACTTGGCAAAAGATTACTGGTCATCAATCTTCTTCCTGAAGTTCCAGGAGGAATGTGATATGAGATGTAACGGCTACGAGCTTGAGCAAATGACAGGGTGGAATTATTCTCCAAGGTTAAGTTCTGTGCATGGTACAGATGATCCTTTTCACCATGATCATCTTCTGAAGAACTCAGAATGTGGCAATGATACCGACTCATGA
Protein sequence

>MsG0380016237.01.T01

MYVQYSEQDGKPLPKFGEWDVNDPSSAEGFTVIFNKARDDKKIASASGRFPSQRRYDSRTGRTNDNNKNLKASSKHNHTSCLFPVWGEGPLGFGLLLSSRITQAFQLYFIFVKRRLPLIRSFLLIPLILLPWIVGAAVIHIKKPLSNRCHMSVQWTIPVVCLHVLYVATLVGVTAAVHHIEFRFDELRDLWRGILVSSVSVVVWVTAYILNEIHDNISWLQIVSRFLLLVLASILVLAFFSISSSQPLLSQISLRRRESREFRTMGQALGIPDSGVLSQSEQISRVDPNEPLDKLLLNKKFRQSFMGFADSCLAGESVHFFDEVHELSKISEHDCVRRIYMARHIIEKYIVAGAAMEINISHRSKQEILSTSDLARADLFHNALNEIVHLMKTNLAKDYWSSIFFLKFQEECDMRCNGYELEQMTGWNYSPRLSSVHGTDDPFHHDHLLKNSECGNDTDS*