AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016238.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016238.01.T01 MTR_3g086190 82.769 325 54 2 1 324 1 324 0.0 554
MsG0380016238.01.T01 MTR_3g086210 49.673 306 152 2 6 311 14 317 9.17e-110 322
MsG0380016238.01.T01 MTR_8g089575 44.771 306 153 7 3 302 11 306 3.35e-83 254
MsG0380016238.01.T01 MTR_6g023590 27.111 225 148 8 38 257 8 221 4.95e-16 77.0
MsG0380016238.01.T01 MTR_3g087850 31.343 201 120 7 42 239 25 210 1.03e-15 76.6
MsG0380016238.01.T01 MTR_6g023610 26.699 206 133 7 41 240 11 204 1.52e-12 67.0
MsG0380016238.01.T01 MTR_6g023600 25.962 208 144 6 38 243 8 207 1.26e-11 64.3
MsG0380016238.01.T01 MTR_1g051165 26.761 213 144 8 35 240 8 215 4.55e-11 62.8
MsG0380016238.01.T01 MTR_7g094510 29.048 210 145 3 48 256 11 217 7.12e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016238.01.T01 AT1G67730 48.333 300 153 2 14 313 20 317 1.50e-103 306
MsG0380016238.01.T01 AT1G24470 44.040 302 160 4 6 302 12 309 7.80e-87 263
MsG0380016238.01.T01 AT3G47350 30.544 239 146 11 7 240 10 233 9.50e-19 85.5
MsG0380016238.01.T01 AT3G47350 30.544 239 146 11 7 240 10 233 1.38e-18 85.1
MsG0380016238.01.T01 AT3G47360 35.233 193 115 7 49 240 51 234 9.49e-18 82.8
MsG0380016238.01.T01 AT5G65205 34.211 190 103 7 43 227 6 178 1.73e-17 81.6
MsG0380016238.01.T01 AT3G03330 30.315 254 158 10 50 297 48 288 4.88e-17 80.9
MsG0380016238.01.T01 AT5G10050 30.693 202 118 8 43 239 5 189 1.79e-15 75.9
MsG0380016238.01.T01 AT5G50600 26.263 198 136 7 44 240 46 234 1.15e-11 65.5
MsG0380016238.01.T01 AT5G50700 26.263 198 136 7 44 240 46 234 1.15e-11 65.5
MsG0380016238.01.T01 AT5G50690 30.890 191 120 8 32 219 33 214 1.25e-11 64.3
MsG0380016238.01.T01 AT5G50590 30.890 191 120 8 32 219 33 214 1.25e-11 64.3
MsG0380016238.01.T01 AT5G18210 29.756 205 137 4 45 245 10 211 2.13e-11 63.9
MsG0380016238.01.T01 AT5G50690 30.890 191 120 8 32 219 33 214 2.31e-11 63.9
MsG0380016238.01.T01 AT5G50590 30.890 191 120 8 32 219 33 214 2.31e-11 63.9
MsG0380016238.01.T01 AT5G18210 29.756 205 137 4 45 245 10 211 3.02e-11 63.2
MsG0380016238.01.T01 AT1G10310 26.389 216 145 8 49 260 21 226 3.43e-11 62.8
MsG0380016238.01.T01 AT1G24360 28.111 217 140 8 49 258 80 287 4.40e-11 63.5
MsG0380016238.01.T01 AT3G55290 27.358 212 141 8 34 240 10 213 7.69e-11 62.4
MsG0380016238.01.T01 AT3G55290 27.358 212 141 8 34 240 11 214 7.98e-11 62.4

Find 81 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAATTGAAAACTAAATT+TGG 0.155860 3:-80823243 None:intergenic
GAGATAGTAGATAGAAATTT+TGG 0.161547 3:+80821253 MsG0380016238.01.T01:CDS
TGGCATCATCAATGTTAATT+TGG 0.164170 3:-80823223 None:intergenic
CATGCTTTGCTGTATTTATC+TGG 0.218962 3:-80823010 None:intergenic
ATGCTTGTAATCCTTTGATT+TGG 0.254915 3:-80823186 None:intergenic
TTTCTTAACAGGCGTGAAAA+AGG 0.274386 3:+80823148 MsG0380016238.01.T01:CDS
TCCTTATCCAGTTGAGAAAA+TGG 0.280077 3:-80821063 None:intergenic
ATAGATGTTGATTTAGTTAG+TGG 0.285930 3:-80823340 None:intergenic
ATCAACATCTATATATGATT+TGG 0.307876 3:+80823351 MsG0380016238.01.T01:three_prime_UTR
TGCTTGTAATCCTTTGATTT+GGG 0.340036 3:-80823185 None:intergenic
GCTATTATAAACATTGGTTC+TGG 0.353312 3:+80821532 MsG0380016238.01.T01:CDS
ACAGCAAAGCATGCACAAAA+TGG 0.354360 3:+80823020 MsG0380016238.01.T01:CDS
AACAACAATAATATAGTAAT+AGG 0.359843 3:-80823386 None:intergenic
AGAGTAGAAGAAGCAATATA+TGG 0.363822 3:+80821340 MsG0380016238.01.T01:CDS
TCTTATGAAATCAAAGTTGT+TGG 0.384757 3:+80820854 MsG0380016238.01.T01:five_prime_UTR
GAAGTAGATTCAAGTTTAAG+AGG 0.388188 3:-80821226 None:intergenic
GTTCTCTGCATGCACCAGTT+TGG 0.392011 3:+80822643 MsG0380016238.01.T01:CDS
ATTATTAAAGTGAATGTTGA+AGG 0.396437 3:+80821454 MsG0380016238.01.T01:CDS
CTGTGCTTCCTAGTATGATT+AGG 0.399278 3:+80821497 MsG0380016238.01.T01:CDS
AACTCAAAGACTATGGTTCA+TGG 0.402521 3:+80821110 MsG0380016238.01.T01:CDS
GGACTCAACATTCTCTTAGT+TGG 0.416862 3:+80821196 MsG0380016238.01.T01:CDS
TTGCTGTATTTATCTGGTGT+TGG 0.417488 3:-80823004 None:intergenic
TGAGGTTGATTTGGATATGA+TGG 0.418945 3:+80821426 MsG0380016238.01.T01:CDS
ATCTGCAGTCGTTTCTCATA+AGG 0.423494 3:+80823083 MsG0380016238.01.T01:CDS
TCATGCATTGTATCTGACTT+AGG 0.428154 3:+80820777 MsG0380016238.01.T01:five_prime_UTR
ACAACATACATATTATTCAC+TGG 0.442404 3:-80823315 None:intergenic
AAGAAAATAACGTAGCATAT+AGG 0.452534 3:-80823131 None:intergenic
GCCGATTCCATCGGTGGAGC+CGG 0.457761 3:-80821143 None:intergenic
TAGGAATCCATGAGCACATC+GGG 0.461487 3:-80823112 None:intergenic
GTGGTGTTTGTATTCCAAAC+TGG 0.472713 3:-80822657 None:intergenic
AATAAGATTGATGATGGAAT+GGG 0.475971 3:+80823288 MsG0380016238.01.T01:three_prime_UTR
GTTGCTGCTAGGAAGAAATC+TGG 0.477204 3:-80821001 None:intergenic
ATGGAATAAAGATTTGCATA+TGG 0.479916 3:-80821044 None:intergenic
AAATAAGATTGATGATGGAA+TGG 0.480656 3:+80823287 MsG0380016238.01.T01:three_prime_UTR
ACCGGCTCCACCGATGGAAT+CGG 0.490802 3:+80821142 MsG0380016238.01.T01:CDS
TATTCCCTTTGTCATAATTG+AGG 0.491684 3:+80823425 MsG0380016238.01.T01:three_prime_UTR
GGCTTTGCCGATTCCATCGG+TGG 0.493311 3:-80821149 None:intergenic
AAGTAGATTCAAGTTTAAGA+GGG 0.496581 3:-80821225 None:intergenic
GCAATATATGGTTTAGATGT+GGG 0.498444 3:+80821352 MsG0380016238.01.T01:CDS
ATAGACATGCAAAATAATAG+TGG 0.502875 3:+80821301 MsG0380016238.01.T01:CDS
ATTGTGACAAGAGGAAAAGA+AGG 0.504234 3:-80821571 None:intergenic
GAAAATTCCCGATGTGCTCA+TGG 0.510469 3:+80823105 MsG0380016238.01.T01:CDS
ATGAATATAAATAAGCATGT+TGG 0.511757 3:-80820826 None:intergenic
CATGGCTTTGCCGATTCCAT+CGG 0.522208 3:-80821152 None:intergenic
ATAATCACCGGCTCCACCGA+TGG 0.523054 3:+80821136 MsG0380016238.01.T01:CDS
AAAGGAGCTATTATAAACAT+TGG 0.524105 3:+80821526 MsG0380016238.01.T01:CDS
TGCAGATTGTGAAAGAAGTA+AGG 0.528239 3:-80823067 None:intergenic
GATAAAGAAAGAGAACTCCT+AGG 0.529816 3:-80820958 None:intergenic
AGCAATATATGGTTTAGATG+TGG 0.530533 3:+80821351 MsG0380016238.01.T01:CDS
ACTACCTCAATTATGACAAA+GGG 0.531053 3:-80823429 None:intergenic
CAACATACATATTATTCACT+GGG 0.531202 3:-80823314 None:intergenic
ACTCAAAGACTATGGTTCAT+GGG 0.535072 3:+80821111 MsG0380016238.01.T01:CDS
AGTATTTCACTGCTGACAAA+GGG 0.535144 3:-80820924 None:intergenic
TTTAGTTAATGGTGCTGGTG+TGG 0.543103 3:+80821378 MsG0380016238.01.T01:CDS
CGGAATTGACATCCAGTGCC+AGG 0.545467 3:+80822679 MsG0380016238.01.T01:CDS
GGTTCATGGGCTATAATCAC+CGG 0.545522 3:+80821124 MsG0380016238.01.T01:CDS
ATGAAATCAAAGTTGTTGGT+TGG 0.556166 3:+80820858 MsG0380016238.01.T01:five_prime_UTR
CTAGCAGCAACAATCACCTT+AGG 0.557628 3:+80821013 MsG0380016238.01.T01:CDS
AAGTGATGTCTTCATATCAC+AGG 0.559686 3:-80822975 None:intergenic
TGATGCAAACTCAAAAGCCA+TGG 0.564499 3:-80821170 None:intergenic
TAGTATTTCACTGCTGACAA+AGG 0.567557 3:-80820925 None:intergenic
GACTACCTCAATTATGACAA+AGG 0.572228 3:-80823430 None:intergenic
GCGACGAGAGAACCTGGCAC+TGG 0.574176 3:-80822691 None:intergenic
CGATGGAATCGGCAAAGCCA+TGG 0.581768 3:+80821153 MsG0380016238.01.T01:CDS
ATGTTGGAATTGTGTGGGGA+TGG 0.589518 3:-80820810 None:intergenic
TAAGCATGTTGGAATTGTGT+GGG 0.592183 3:-80820815 None:intergenic
AAAGCATGCACAAAATGGAC+TGG 0.593648 3:+80823025 MsG0380016238.01.T01:CDS
CTAAGGTGATTGTTGCTGCT+AGG 0.596483 3:-80821012 None:intergenic
GCATATGGAGATGAAGCCTA+AGG 0.601283 3:-80821029 None:intergenic
TGAATGTTGAAGGAACAACT+TGG 0.605916 3:+80821464 MsG0380016238.01.T01:CDS
AAAAGAAGGAAGTACAACAC+TGG 0.623708 3:-80821557 None:intergenic
GCTGCATAAATTGTGACAAG+AGG 0.626230 3:-80821580 None:intergenic
TCTTTATCTTAATAACCACA+TGG 0.630878 3:+80820973 MsG0380016238.01.T01:exon
ATCGACGACTCCCAAATCAA+AGG 0.632858 3:+80823175 MsG0380016238.01.T01:CDS
ATAGGAATCCATGAGCACAT+CGG 0.639384 3:-80823113 None:intergenic
CATGCAAAATAATAGTGGAG+AGG 0.642388 3:+80821306 MsG0380016238.01.T01:CDS
ATAAGCATGTTGGAATTGTG+TGG 0.649850 3:-80820816 None:intergenic
GGCACTGGATGTCAATTCCG+TGG 0.667492 3:-80822676 None:intergenic
AAGCATGTTGGAATTGTGTG+GGG 0.691600 3:-80820814 None:intergenic
AGAAATCTGGCAAATCCATG+TGG 0.713118 3:-80820988 None:intergenic
AGTTTGGAATACAAACACCA+CGG 0.755876 3:+80822659 MsG0380016238.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTTAAAAAATAGAAG+AGG - Chr3:80822430-80822449 None:intergenic 10.0%
!! TTATCTTCATAAAAAATATT+GGG + Chr3:80822548-80822567 MsG0380016238.01.T01:intron 10.0%
!! TTTAAATTGAAAACTAAATT+TGG - Chr3:80823246-80823265 None:intergenic 10.0%
!! AACAACAATAATATAGTAAT+AGG - Chr3:80823389-80823408 None:intergenic 15.0%
!! CTGTATATTATATTAACTAA+AGG - Chr3:80822404-80822423 None:intergenic 15.0%
!! CTTATCTTCATAAAAAATAT+TGG + Chr3:80822547-80822566 MsG0380016238.01.T01:intron 15.0%
!! TAAACATAAGATTAATGATT+TGG + Chr3:80822845-80822864 MsG0380016238.01.T01:intron 15.0%
!! TAATAATATTTCTCTAACTA+TGG + Chr3:80822066-80822085 MsG0380016238.01.T01:intron 15.0%
!!! AAGATATAGATTCAAATTTT+TGG - Chr3:80822595-80822614 None:intergenic 15.0%
!!! AATACTATTTTTAAAAACCT+AGG + Chr3:80820941-80820960 MsG0380016238.01.T01:five_prime_UTR 15.0%
!!! AATTATTCTGTGTTTTAATT+TGG + Chr3:80822094-80822113 MsG0380016238.01.T01:intron 15.0%
!!! ATTTTCTTATAAAGGATTTA+AGG + Chr3:80821849-80821868 MsG0380016238.01.T01:intron 15.0%
!!! ATTTTTTATGAAGATAAGAA+AGG - Chr3:80822545-80822564 None:intergenic 15.0%
!!! CTAATTAATATGTTTTTGTT+TGG - Chr3:80820901-80820920 None:intergenic 15.0%
!!! CTTTAATATCAGAATATTTT+GGG - Chr3:80821656-80821675 None:intergenic 15.0%
!!! TCTTTAATATCAGAATATTT+TGG - Chr3:80821657-80821676 None:intergenic 15.0%
!! ATCAACATCTATATATGATT+TGG + Chr3:80823351-80823370 MsG0380016238.01.T01:three_prime_UTR 20.0%
!! ATGAATATAAATAAGCATGT+TGG - Chr3:80820829-80820848 None:intergenic 20.0%
!! ATTATTAAAGTGAATGTTGA+AGG + Chr3:80821454-80821473 MsG0380016238.01.T01:CDS 20.0%
!! TGTAAAAATAAGATTGATGA+TGG + Chr3:80823282-80823301 MsG0380016238.01.T01:three_prime_UTR 20.0%
!! TTAATATTTACTCATTCGTT+CGG - Chr3:80821889-80821908 None:intergenic 20.0%
!!! AAAGACATTGTTTTAAAAAC+CGG + Chr3:80821672-80821691 MsG0380016238.01.T01:intron 20.0%
!!! AATTGATTTACTGTTAAACA+TGG - Chr3:80822916-80822935 None:intergenic 20.0%
!!! GAAATGAATTACTTTCTTTT+TGG - Chr3:80822382-80822401 None:intergenic 20.0%
!!! TTCTTTTAATTGTTTCACAT+AGG + Chr3:80821957-80821976 MsG0380016238.01.T01:intron 20.0%
!!! TTTGAATTTCTATTTGCTTT+TGG + Chr3:80821981-80822000 MsG0380016238.01.T01:intron 20.0%
! AAACATAACTTCACAACTAA+AGG - Chr3:80822213-80822232 None:intergenic 25.0%
! AAAGGAGCTATTATAAACAT+TGG + Chr3:80821526-80821545 MsG0380016238.01.T01:CDS 25.0%
! AAGAAAATAACGTAGCATAT+AGG - Chr3:80823134-80823153 None:intergenic 25.0%
! ACAACATACATATTATTCAC+TGG - Chr3:80823318-80823337 None:intergenic 25.0%
! AGTATGATTAGGAAGAAAAA+AGG + Chr3:80821508-80821527 MsG0380016238.01.T01:CDS 25.0%
! ATAGACATGCAAAATAATAG+TGG + Chr3:80821301-80821320 MsG0380016238.01.T01:CDS 25.0%
! ATCATACACACAAAATTCAA+TGG - Chr3:80822503-80822522 None:intergenic 25.0%
! ATGGAATAAAGATTTGCATA+TGG - Chr3:80821047-80821066 None:intergenic 25.0%
! CAACATACATATTATTCACT+GGG - Chr3:80823317-80823336 None:intergenic 25.0%
! CATCTTCTACCATTAATTAA+TGG - Chr3:80822802-80822821 None:intergenic 25.0%
! CCATTAATTAATGGTATCAA+CGG - Chr3:80822793-80822812 None:intergenic 25.0%
! GTAAATCAATTTGAATGTAC+AGG + Chr3:80822925-80822944 MsG0380016238.01.T01:intron 25.0%
! GTACAAATAAATCGAAAAAG+AGG - Chr3:80821796-80821815 None:intergenic 25.0%
! GTTACTTAGATTCAATCATA+CGG + Chr3:80822300-80822319 MsG0380016238.01.T01:intron 25.0%
! TCATACACACAAAATTCAAT+GGG - Chr3:80822502-80822521 None:intergenic 25.0%
! TCATGAAAAAATCTAGCATA+AGG - Chr3:80821409-80821428 None:intergenic 25.0%
! TCTTATGAAATCAAAGTTGT+TGG + Chr3:80820854-80820873 MsG0380016238.01.T01:five_prime_UTR 25.0%
! TCTTTATCTTAATAACCACA+TGG + Chr3:80820973-80820992 MsG0380016238.01.T01:exon 25.0%
! TTAGTTGTGAAGTTATGTTT+CGG + Chr3:80822213-80822232 MsG0380016238.01.T01:intron 25.0%
!! AAGTAGATTCAAGTTTAAGA+GGG - Chr3:80821228-80821247 None:intergenic 25.0%
!! ACGACATCATTTTCTTATAA+AGG + Chr3:80821841-80821860 MsG0380016238.01.T01:intron 25.0%
!! ATTTTTGTTGAGACAAACAT+TGG - Chr3:80822953-80822972 None:intergenic 25.0%
!! GAGATAGTAGATAGAAATTT+TGG + Chr3:80821253-80821272 MsG0380016238.01.T01:CDS 25.0%
!! TATCTTGATGCTAATTTTAC+AGG + Chr3:80822609-80822628 MsG0380016238.01.T01:intron 25.0%
!! TTTTTCTTCCTAATCATACT+AGG - Chr3:80821508-80821527 None:intergenic 25.0%
!!! AAATAAGATTGATGATGGAA+TGG + Chr3:80823287-80823306 MsG0380016238.01.T01:three_prime_UTR 25.0%
!!! AATAAGATTGATGATGGAAT+GGG + Chr3:80823288-80823307 MsG0380016238.01.T01:three_prime_UTR 25.0%
!!! ATAGATGTTGATTTAGTTAG+TGG - Chr3:80823343-80823362 None:intergenic 25.0%
!!! ATTTTTTCATGAGGTTGATT+TGG + Chr3:80821417-80821436 MsG0380016238.01.T01:CDS 25.0%
!!! TAGAAATTTTGGAAATGTTG+AGG + Chr3:80821264-80821283 MsG0380016238.01.T01:CDS 25.0%
!!! TTATGCTAGATTTTTTCATG+AGG + Chr3:80821408-80821427 MsG0380016238.01.T01:CDS 25.0%
ACTACCTCAATTATGACAAA+GGG - Chr3:80823432-80823451 None:intergenic 30.0%
AGAGTAGAAGAAGCAATATA+TGG + Chr3:80821340-80821359 MsG0380016238.01.T01:CDS 30.0%
AGCAATATATGGTTTAGATG+TGG + Chr3:80821351-80821370 MsG0380016238.01.T01:CDS 30.0%
ATGAAATCAAAGTTGTTGGT+TGG + Chr3:80820858-80820877 MsG0380016238.01.T01:five_prime_UTR 30.0%
ATGCTTGTAATCCTTTGATT+TGG - Chr3:80823189-80823208 None:intergenic 30.0%
CAAAAAGAATAAGAGATCGT+TGG - Chr3:80822339-80822358 None:intergenic 30.0%
CACAAAAAACTCAAAGACTA+TGG + Chr3:80821103-80821122 MsG0380016238.01.T01:CDS 30.0%
CCGTTGATACCATTAATTAA+TGG + Chr3:80822790-80822809 MsG0380016238.01.T01:intron 30.0%
GCAATATATGGTTTAGATGT+GGG + Chr3:80821352-80821371 MsG0380016238.01.T01:CDS 30.0%
TATTCCCTTTGTCATAATTG+AGG + Chr3:80823425-80823444 MsG0380016238.01.T01:three_prime_UTR 30.0%
TGATGAATATTCTGTGATAC+AGG + Chr3:80822746-80822765 MsG0380016238.01.T01:intron 30.0%
TGGCATCATCAATGTTAATT+TGG - Chr3:80823226-80823245 None:intergenic 30.0%
! CTTTATTCCATTTTCTCAAC+TGG + Chr3:80821056-80821075 MsG0380016238.01.T01:CDS 30.0%
! GAAGTAGATTCAAGTTTAAG+AGG - Chr3:80821229-80821248 None:intergenic 30.0%
! TGCTTGTAATCCTTTGATTT+GGG - Chr3:80823188-80823207 None:intergenic 30.0%
!! GCTATTATAAACATTGGTTC+TGG + Chr3:80821532-80821551 MsG0380016238.01.T01:CDS 30.0%
!! TGCTACGTTATTTTCTTAAC+AGG + Chr3:80823137-80823156 MsG0380016238.01.T01:CDS 30.0%
!!! CATTGTTTTAAAAACCGGAT+TGG + Chr3:80821677-80821696 MsG0380016238.01.T01:intron 30.0%
!!! GATGACTTGTTTGTGTTTTA+GGG + Chr3:80822017-80822036 MsG0380016238.01.T01:intron 30.0%
!!! GATGTGGGAATTTTAGTTAA+TGG + Chr3:80821367-80821386 MsG0380016238.01.T01:CDS 30.0%
!!! TAGTCTTTGAGTTTTTTGTG+TGG - Chr3:80821103-80821122 None:intergenic 30.0%
!!! TGATGACTTGTTTGTGTTTT+AGG + Chr3:80822016-80822035 MsG0380016238.01.T01:intron 30.0%
AACTCAAAGACTATGGTTCA+TGG + Chr3:80821110-80821129 MsG0380016238.01.T01:CDS 35.0%
AAGTGATGTCTTCATATCAC+AGG - Chr3:80822978-80822997 None:intergenic 35.0%
ACTCAAAGACTATGGTTCAT+GGG + Chr3:80821111-80821130 MsG0380016238.01.T01:CDS 35.0%
AGTAACTCAGTCGTATATCT+TGG - Chr3:80822286-80822305 None:intergenic 35.0%
AGTATTTCACTGCTGACAAA+GGG - Chr3:80820927-80820946 None:intergenic 35.0%
ATAAGCATGTTGGAATTGTG+TGG - Chr3:80820819-80820838 None:intergenic 35.0%
ATTCAATCATACGGATCAAC+CGG + Chr3:80822309-80822328 MsG0380016238.01.T01:intron 35.0%
ATTGTGACAAGAGGAAAAGA+AGG - Chr3:80821574-80821593 None:intergenic 35.0%
CATTCTGATTCAATCTGGTT+TGG + Chr3:80822238-80822257 MsG0380016238.01.T01:intron 35.0%
GACTACCTCAATTATGACAA+AGG - Chr3:80823433-80823452 None:intergenic 35.0%
GATAAAGAAAGAGAACTCCT+AGG - Chr3:80820961-80820980 None:intergenic 35.0%
TAAGCATGTTGGAATTGTGT+GGG - Chr3:80820818-80820837 None:intergenic 35.0%
TAGTATTTCACTGCTGACAA+AGG - Chr3:80820928-80820947 None:intergenic 35.0%
TCAAATCAATCACACCATGA+AGG - Chr3:80822729-80822748 None:intergenic 35.0%
TCATGCATTGTATCTGACTT+AGG + Chr3:80820777-80820796 MsG0380016238.01.T01:five_prime_UTR 35.0%
TCCTTATCCAGTTGAGAAAA+TGG - Chr3:80821066-80821085 None:intergenic 35.0%
TGAATGTTGAAGGAACAACT+TGG + Chr3:80821464-80821483 MsG0380016238.01.T01:CDS 35.0%
TGCAGATTGTGAAAGAAGTA+AGG - Chr3:80823070-80823089 None:intergenic 35.0%
TTGCTGTATTTATCTGGTGT+TGG - Chr3:80823007-80823026 None:intergenic 35.0%
TTTCTTAACAGGCGTGAAAA+AGG + Chr3:80823148-80823167 MsG0380016238.01.T01:CDS 35.0%
! AAAAGAAGGAAGTACAACAC+TGG - Chr3:80821560-80821579 None:intergenic 35.0%
! ACAACTAAAGGCATAAACAG+AGG - Chr3:80822201-80822220 None:intergenic 35.0%
! ACCAATGACTTGGATTGAAT+CGG + Chr3:80821758-80821777 MsG0380016238.01.T01:intron 35.0%
! AGTTTGGAATACAAACACCA+CGG + Chr3:80822659-80822678 MsG0380016238.01.T01:CDS 35.0%
! CATGCAAAATAATAGTGGAG+AGG + Chr3:80821306-80821325 MsG0380016238.01.T01:CDS 35.0%
! CATGCTTTGCTGTATTTATC+TGG - Chr3:80823013-80823032 None:intergenic 35.0%
! TATAAAGGATTTAAGGTGCC+AGG + Chr3:80821856-80821875 MsG0380016238.01.T01:intron 35.0%
! TCCATTTTCTCAACTGGATA+AGG + Chr3:80821062-80821081 MsG0380016238.01.T01:CDS 35.0%
!! ATGGACTGGCTATGAAAAAT+TGG + Chr3:80823039-80823058 MsG0380016238.01.T01:CDS 35.0%
!! TGAGGTTGATTTGGATATGA+TGG + Chr3:80821426-80821445 MsG0380016238.01.T01:CDS 35.0%
!!! ACTTGTTTGTGTTTTAGGGT+GGG + Chr3:80822021-80822040 MsG0380016238.01.T01:intron 35.0%
!!! GCTTTTGAGTTTGCATCAAA+GGG + Chr3:80821175-80821194 MsG0380016238.01.T01:CDS 35.0%
!!! GGAATTTTAGTTAATGGTGC+TGG + Chr3:80821373-80821392 MsG0380016238.01.T01:CDS 35.0%
!!! GTTTTAAAAACCGGATTGGA+CGG + Chr3:80821681-80821700 MsG0380016238.01.T01:intron 35.0%
AAAGCATGCACAAAATGGAC+TGG + Chr3:80823025-80823044 MsG0380016238.01.T01:CDS 40.0%
AAGCATGTTGGAATTGTGTG+GGG - Chr3:80820817-80820836 None:intergenic 40.0%
ACAGCAAAGCATGCACAAAA+TGG + Chr3:80823020-80823039 MsG0380016238.01.T01:CDS 40.0%
ACAGGTATGAACCAATGACT+TGG + Chr3:80821748-80821767 MsG0380016238.01.T01:intron 40.0%
AGAAATCTGGCAAATCCATG+TGG - Chr3:80820991-80821010 None:intergenic 40.0%
ATAAGAGATCGTTGGATCAC+CGG - Chr3:80822331-80822350 None:intergenic 40.0%
ATAGGAATCCATGAGCACAT+CGG - Chr3:80823116-80823135 None:intergenic 40.0%
ATCTGCAGTCGTTTCTCATA+AGG + Chr3:80823083-80823102 MsG0380016238.01.T01:CDS 40.0%
CGGTTCATTCTGATTCAATC+TGG + Chr3:80822233-80822252 MsG0380016238.01.T01:intron 40.0%
CTGTGCTTCCTAGTATGATT+AGG + Chr3:80821497-80821516 MsG0380016238.01.T01:CDS 40.0%
GCTGCATAAATTGTGACAAG+AGG - Chr3:80821583-80821602 None:intergenic 40.0%
GGACTCAACATTCTCTTAGT+TGG + Chr3:80821196-80821215 MsG0380016238.01.T01:CDS 40.0%
GTGGTGTTTGTATTCCAAAC+TGG - Chr3:80822660-80822679 None:intergenic 40.0%
TGATGCAAACTCAAAAGCCA+TGG - Chr3:80821173-80821192 None:intergenic 40.0%
! CCAATGACTTGGATTGAATC+GGG + Chr3:80821759-80821778 MsG0380016238.01.T01:intron 40.0%
!! CATTCGTTCGGATTTTAACC+TGG - Chr3:80821877-80821896 None:intergenic 40.0%
!! TTTAGTTAATGGTGCTGGTG+TGG + Chr3:80821378-80821397 MsG0380016238.01.T01:CDS 40.0%
!!! GACTTGTTTGTGTTTTAGGG+TGG + Chr3:80822020-80822039 MsG0380016238.01.T01:intron 40.0%
!!! GGCTTTTGAGTTTGCATCAA+AGG + Chr3:80821174-80821193 MsG0380016238.01.T01:CDS 40.0%
AAATTGGGTGGAGCCTCTAA+TGG + Chr3:80821708-80821727 MsG0380016238.01.T01:intron 45.0%
ACCATGAAGGTGAAGAAGAG+AGG - Chr3:80822716-80822735 None:intergenic 45.0%
ATCGACGACTCCCAAATCAA+AGG + Chr3:80823175-80823194 MsG0380016238.01.T01:CDS 45.0%
ATGTTGGAATTGTGTGGGGA+TGG - Chr3:80820813-80820832 None:intergenic 45.0%
CCCGATTCAATCCAAGTCAT+TGG - Chr3:80821762-80821781 None:intergenic 45.0%
CTAAGGTGATTGTTGCTGCT+AGG - Chr3:80821015-80821034 None:intergenic 45.0%
CTAGCAGCAACAATCACCTT+AGG + Chr3:80821013-80821032 MsG0380016238.01.T01:CDS 45.0%
GAAAATTCCCGATGTGCTCA+TGG + Chr3:80823105-80823124 MsG0380016238.01.T01:CDS 45.0%
GACTGGCAATGCTATTGAAC+AGG + Chr3:80821730-80821749 MsG0380016238.01.T01:intron 45.0%
GCATATGGAGATGAAGCCTA+AGG - Chr3:80821032-80821051 None:intergenic 45.0%
GTTGCTGCTAGGAAGAAATC+TGG - Chr3:80821004-80821023 None:intergenic 45.0%
TAGCATTGCCAGTCCATTAG+AGG - Chr3:80821724-80821743 None:intergenic 45.0%
TAGGAATCCATGAGCACATC+GGG - Chr3:80823115-80823134 None:intergenic 45.0%
! GGTTCATGGGCTATAATCAC+CGG + Chr3:80821124-80821143 MsG0380016238.01.T01:CDS 45.0%
GCCTCTCTTCTTCACCTTCA+TGG + Chr3:80822712-80822731 MsG0380016238.01.T01:intron 50.0%
GTTCTCTGCATGCACCAGTT+TGG + Chr3:80822643-80822662 MsG0380016238.01.T01:CDS 50.0%
TAGAGGCTCCACCCAATTTC+CGG - Chr3:80821707-80821726 None:intergenic 50.0%
! TAAAAACCGGATTGGACGGC+CGG + Chr3:80821685-80821704 MsG0380016238.01.T01:intron 50.0%
!! CATGGCTTTGCCGATTCCAT+CGG - Chr3:80821155-80821174 None:intergenic 50.0%
CAATTTCCGGCCGTCCAATC+CGG - Chr3:80821694-80821713 None:intergenic 55.0%
CGATGGAATCGGCAAAGCCA+TGG + Chr3:80821153-80821172 MsG0380016238.01.T01:CDS 55.0%
CGGAATTGACATCCAGTGCC+AGG + Chr3:80822679-80822698 MsG0380016238.01.T01:CDS 55.0%
GGATTGGACGGCCGGAAATT+GGG + Chr3:80821693-80821712 MsG0380016238.01.T01:intron 55.0%
! GGCACTGGATGTCAATTCCG+TGG - Chr3:80822679-80822698 None:intergenic 55.0%
!! ATAATCACCGGCTCCACCGA+TGG + Chr3:80821136-80821155 MsG0380016238.01.T01:CDS 55.0%
AGAGAGGCGACGAGAGAACC+TGG - Chr3:80822700-80822719 None:intergenic 60.0%
TTGGACGGCCGGAAATTGGG+TGG + Chr3:80821696-80821715 MsG0380016238.01.T01:intron 60.0%
! ACCGGCTCCACCGATGGAAT+CGG + Chr3:80821142-80821161 MsG0380016238.01.T01:CDS 60.0%
! CGGATTGGACGGCCGGAAAT+TGG + Chr3:80821692-80821711 MsG0380016238.01.T01:intron 60.0%
! GGGTGGAGCCTCTAATGGAC+TGG + Chr3:80821713-80821732 MsG0380016238.01.T01:intron 60.0%
!! GGCTTTGCCGATTCCATCGG+TGG - Chr3:80821152-80821171 None:intergenic 60.0%
GCGACGAGAGAACCTGGCAC+TGG - Chr3:80822694-80822713 None:intergenic 65.0%
! GCCGATTCCATCGGTGGAGC+CGG - Chr3:80821146-80821165 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 80820771 80823464 80820771 ID=MsG0380016238.01;Name=MsG0380016238.01
Chr3 mRNA 80820771 80823464 80820771 ID=MsG0380016238.01.T01;Parent=MsG0380016238.01;Name=MsG0380016238.01.T01;_AED=0.48;_eAED=0.48;_QI=221|1|1|1|1|1|3|233|324
Chr3 exon 80820771 80821611 80820771 ID=MsG0380016238.01.T01:exon:13671;Parent=MsG0380016238.01.T01
Chr3 exon 80822631 80822700 80822631 ID=MsG0380016238.01.T01:exon:13672;Parent=MsG0380016238.01.T01
Chr3 exon 80822947 80823464 80822947 ID=MsG0380016238.01.T01:exon:13673;Parent=MsG0380016238.01.T01
Chr3 five_prime_UTR 80820771 80820991 80820771 ID=MsG0380016238.01.T01:five_prime_utr;Parent=MsG0380016238.01.T01
Chr3 CDS 80820992 80821611 80820992 ID=MsG0380016238.01.T01:cds;Parent=MsG0380016238.01.T01
Chr3 CDS 80822631 80822700 80822631 ID=MsG0380016238.01.T01:cds;Parent=MsG0380016238.01.T01
Chr3 CDS 80822947 80823231 80822947 ID=MsG0380016238.01.T01:cds;Parent=MsG0380016238.01.T01
Chr3 three_prime_UTR 80823232 80823464 80823232 ID=MsG0380016238.01.T01:three_prime_utr;Parent=MsG0380016238.01.T01
Gene Sequence

>MsG0380016238.01.T01

ATGGATTTGCCAGATTTCTTCCTAGCAGCAACAATCACCTTAGGCTTCATCTCCATATGCAAATCTTTATTCCATTTTCTCAACTGGATAAGGATCATGTTCTTGAGACCACACAAAAAACTCAAAGACTATGGTTCATGGGCTATAATCACCGGCTCCACCGATGGAATCGGCAAAGCCATGGCTTTTGAGTTTGCATCAAAGGGACTCAACATTCTCTTAGTTGGTAGAAACCCTCTTAAACTTGAATCTACTTCAAAAGAGATAGTAGATAGAAATTTTGGAAATGTTGAGGTAAAGTTTGTTGTTATAGACATGCAAAATAATAGTGGAGAGGAAATAATTAAAAGAGTAGAAGAAGCAATATATGGTTTAGATGTGGGAATTTTAGTTAATGGTGCTGGTGTGGCTTATCCTTATGCTAGATTTTTTCATGAGGTTGATTTGGATATGATGGATTCTATTATTAAAGTGAATGTTGAAGGAACAACTTGGATTACAAAAGCTGTGCTTCCTAGTATGATTAGGAAGAAAAAAGGAGCTATTATAAACATTGGTTCTGGTTCCAGTGTTGTACTTCCTTCTTTTCCTCTTGTCACAATTTATGCAGCATCAAAAGCGTATCTTGCAATGTTCTCTGCATGCACCAGTTTGGAATACAAACACCACGGAATTGACATCCAGTGCCAGGCTCCAATGTTTGTCTCAACAAAAATGACCTGTGATATGAAGACATCACTTTTTGTTCCAACACCAGATAAATACAGCAAAGCATGCACAAAATGGACTGGCTATGAAAAATTGGTTGTGCCTTACTTCTTTCACAATCTGCAGTCGTTTCTCATAAGGAAAATTCCCGATGTGCTCATGGATTCCTATATGCTACGTTATTTTCTTAACAGGCGTGAAAAAGGACTCATCGACGACTCCCAAATCAAAGGATTACAAGCATCTAGTAATTCTGAGCCAAATTAA
Protein sequence

>MsG0380016238.01.T01

MDLPDFFLAATITLGFISICKSLFHFLNWIRIMFLRPHKKLKDYGSWAIITGSTDGIGKAMAFEFASKGLNILLVGRNPLKLESTSKEIVDRNFGNVEVKFVVIDMQNNSGEEIIKRVEEAIYGLDVGILVNGAGVAYPYARFFHEVDLDMMDSIIKVNVEGTTWITKAVLPSMIRKKKGAIINIGSGSSVVLPSFPLVTIYAASKAYLAMFSACTSLEYKHHGIDIQCQAPMFVSTKMTCDMKTSLFVPTPDKYSKACTKWTGYEKLVVPYFFHNLQSFLIRKIPDVLMDSYMLRYFLNRREKGLIDDSQIKGLQASSNSEPN*