AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016371.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016371.01.T01 MTR_3g088560 98.777 327 4 0 1 327 1 327 0.0 676
MsG0380016371.01.T01 MTR_3g088560 98.361 244 4 0 84 327 14 257 0.0 502
MsG0380016371.01.T01 MTR_3g088560 98.760 242 3 0 86 327 31 272 2.36e-180 499
MsG0380016371.01.T01 MTR_1g029850 73.476 328 80 4 1 323 1 326 3.71e-176 491
MsG0380016371.01.T01 MTR_3g088560 98.537 205 3 0 123 327 1 205 1.87e-150 421
MsG0380016371.01.T01 MTR_3g061090 50.938 320 153 4 4 321 7 324 9.33e-115 335
MsG0380016371.01.T01 MTR_5g096700 46.273 322 168 4 2 321 7 325 1.22e-96 289
MsG0380016371.01.T01 MTR_3g061090 50.199 251 122 3 72 321 4 252 9.91e-81 246
MsG0380016371.01.T01 MTR_5g096700 45.896 268 140 4 56 321 2 266 1.26e-73 228
MsG0380016371.01.T01 MTR_5g096790 36.747 332 178 11 5 321 8 322 1.03e-55 184
MsG0380016371.01.T01 MTR_7g094900 31.298 131 85 2 161 289 545 672 4.79e-12 67.4
MsG0380016371.01.T01 MTR_7g094910 31.298 131 85 2 161 289 526 653 6.38e-12 67.0
MsG0380016371.01.T01 MTR_3g088660 27.429 175 120 3 151 321 70 241 8.15e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016371.01.T01 AT1G21780 67.890 327 102 3 1 326 1 325 1.98e-163 459
MsG0380016371.01.T01 AT1G21780 67.890 327 102 3 1 326 1 325 1.98e-163 459
MsG0380016371.01.T01 AT1G55760 48.297 323 162 4 2 322 5 324 1.63e-110 325
MsG0380016371.01.T01 AT2G39760 33.108 148 88 1 151 287 184 331 1.90e-14 73.6
MsG0380016371.01.T01 AT2G39760 33.108 148 88 1 151 287 184 331 2.02e-14 73.6
MsG0380016371.01.T01 AT2G39760 33.108 148 88 1 151 287 184 331 2.02e-14 73.6
MsG0380016371.01.T01 AT2G39760 33.108 148 88 1 151 287 184 331 3.65e-14 73.2
MsG0380016371.01.T01 AT5G13060 25.926 162 115 3 129 289 538 695 3.30e-11 64.7

Find 77 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAATTAACTAAACTATTC+TGG 0.154757 3:-82599836 None:intergenic
TTAACATTCTTATTTGAATT+TGG 0.187991 3:+82599710 MsG0380016371.01.T01:CDS
CCCTATCTGCGTGCTGAAAA+AGG 0.234948 3:-82599769 None:intergenic
TTAGAAACTTTAGAAGGTTC+TGG 0.251823 3:-82597387 None:intergenic
AGAACCTTCTAAAGTTTCTA+AGG 0.261878 3:+82597389 MsG0380016371.01.T01:CDS
ATTCTTCGTGTCTCCGTTGC+CGG 0.263401 3:+82597435 MsG0380016371.01.T01:CDS
CATTCATATGGCATATCTTT+AGG 0.265199 3:-82598652 None:intergenic
CAATTAAACAAGTAGATTTC+AGG 0.285069 3:+82599525 MsG0380016371.01.T01:CDS
ATCCTTTCAAGCTCGGAATC+TGG 0.336252 3:+82597226 MsG0380016371.01.T01:CDS
CAAGTGACATGTCTTCAATA+TGG 0.337240 3:-82599466 None:intergenic
ATGCCCTTGGACCATGTAAA+TGG 0.341441 3:+82599872 MsG0380016371.01.T01:three_prime_UTR
CGCAGATAGGGAGCTAGTTA+TGG 0.364760 3:+82599781 MsG0380016371.01.T01:CDS
ACAATTAACTAAACTATTCT+GGG 0.384725 3:-82599835 None:intergenic
AATAAACTTGCGGGAAGAAC+CGG 0.390041 3:-82597454 None:intergenic
CTCTCCAACCATGGCGGATA+GGG 0.391213 3:+82597134 MsG0380016371.01.T01:exon
CGCAAGTTTATTGTTTCTCC+TGG 0.392552 3:+82597465 MsG0380016371.01.T01:CDS
GAATAGTTTAGTTAATTGTA+TGG 0.406977 3:+82599839 MsG0380016371.01.T01:exon
GCAGCTAATAAGTATGATAT+TGG 0.412726 3:+82599572 MsG0380016371.01.T01:CDS
GCCTATTGATACTGCTTTCG+TGG 0.426382 3:+82598598 MsG0380016371.01.T01:CDS
CAGTTTATGAAAGGCTGCTT+AGG 0.427187 3:+82598555 MsG0380016371.01.T01:intron
GCTTTGAAACACAGGAGAAC+TGG 0.434742 3:-82599402 None:intergenic
GCTCTTCGAAGTTACTTGTA+TGG 0.435203 3:+82599500 MsG0380016371.01.T01:CDS
TGTTCCTTAGAAACTTTAGA+AGG 0.437456 3:-82597393 None:intergenic
GGACACAAGATGACTTTGTC+TGG 0.447335 3:+82598576 MsG0380016371.01.T01:CDS
AAACACTGTCTTGCATTGCT+TGG 0.456346 3:+82599548 MsG0380016371.01.T01:CDS
CATCGGCAGTGACGATGGTT+AGG 0.462051 3:-82599346 None:intergenic
TAGCATCTCAAGAACATTGT+CGG 0.467745 3:-82599642 None:intergenic
CGGAGTTAATATCTTCAAGA+AGG 0.472730 3:-82599622 None:intergenic
CCTCATCGAGCATGCGGGAG+AGG 0.478741 3:-82599310 None:intergenic
TTAACTAAACTATTCTGGGT+TGG 0.479406 3:-82599831 None:intergenic
AGGAGAAACAATAAACTTGC+GGG 0.481416 3:-82597463 None:intergenic
CGAAGAATGAAACGAGCAAC+GGG 0.482830 3:-82597420 None:intergenic
ATTAGAAACTCACATTCATA+TGG 0.483383 3:-82598664 None:intergenic
TTGAGATGCTAAATGAGGCT+TGG 0.487814 3:+82599654 MsG0380016371.01.T01:CDS
CGAGCATGCGGGAGAGGCAA+TGG 0.488185 3:-82599304 None:intergenic
CAGTTACACAAGTTAAAGAA+AGG 0.488458 3:+82599683 MsG0380016371.01.T01:CDS
ATCCGCCATGGTTGGAGAGA+TGG 0.488556 3:-82597130 None:intergenic
CCCACGAAAGCAGTATCAAT+AGG 0.495595 3:-82598599 None:intergenic
TGGGAAAATTACTATGCCCT+TGG 0.497075 3:+82599859 MsG0380016371.01.T01:three_prime_UTR
AATAGTTTAGTTAATTGTAT+GGG 0.497219 3:+82599840 MsG0380016371.01.T01:exon
TCAAGCTCGGAATCTGGAAC+TGG 0.498675 3:+82597232 MsG0380016371.01.T01:CDS
AAATCTGATCCTTTCAAGCT+CGG 0.501085 3:+82597219 MsG0380016371.01.T01:CDS
TCTCTCCAACCATGGCGGAT+AGG 0.511002 3:+82597133 MsG0380016371.01.T01:exon
GTAACTTCGAAGAGCAGTGC+AGG 0.535264 3:-82599492 None:intergenic
TGTTCTTGAGATGCTAAATG+AGG 0.536700 3:+82599649 MsG0380016371.01.T01:CDS
ACATTGATATACCATTTACA+TGG 0.543059 3:-82599883 None:intergenic
CCTATTGATACTGCTTTCGT+GGG 0.543952 3:+82598599 MsG0380016371.01.T01:CDS
TTCCAGATTCCGAGCTTGAA+AGG 0.545788 3:-82597228 None:intergenic
GCTAATAAGTATGATATTGG+TGG 0.561832 3:+82599575 MsG0380016371.01.T01:CDS
TATACCATTTACATGGTCCA+AGG 0.562998 3:-82599876 None:intergenic
TCAACCCTATCCGCCATGGT+TGG 0.563052 3:-82597138 None:intergenic
AGTTCTATATGGTCATCTGA+TGG 0.568409 3:+82599245 MsG0380016371.01.T01:CDS
GCTTGTATGCAGTTTATGAA+AGG 0.570227 3:+82598546 MsG0380016371.01.T01:intron
GTGGTGAACCTAGTTCTATA+TGG 0.574017 3:+82599234 MsG0380016371.01.T01:CDS
TCAGATGACCATATAGAACT+AGG 0.576491 3:-82599242 None:intergenic
ACACTCCATCTCTCCAACCA+TGG 0.581067 3:+82597125 MsG0380016371.01.T01:exon
GTGAGCTCTCAATGTACCAT+CGG 0.581782 3:-82599363 None:intergenic
TGGTACATTGAGAGCTCACA+AGG 0.587134 3:+82599367 MsG0380016371.01.T01:CDS
TATAGCCTCATCGAGCATGC+GGG 0.592694 3:-82599315 None:intergenic
ATTCAACATCAATGATGAAG+CGG 0.594685 3:-82598622 None:intergenic
TGAAACATGCTTTGAAACAC+AGG 0.596849 3:-82599410 None:intergenic
GTATAGCCTCATCGAGCATG+CGG 0.598283 3:-82599316 None:intergenic
CCTCTCCCGCATGCTCGATG+AGG 0.599409 3:+82599310 MsG0380016371.01.T01:CDS
CTTGCGGGAAGAACCGGCAA+CGG 0.610737 3:-82597448 None:intergenic
CAATGGAAAATCGAAAACTT+CGG 0.614285 3:+82597180 MsG0380016371.01.T01:CDS
CATGTTTCATCACAACCTGA+AGG 0.618326 3:+82599424 MsG0380016371.01.T01:CDS
TGTACCATCGGCAGTGACGA+TGG 0.620607 3:-82599351 None:intergenic
CAGGAGAAACAATAAACTTG+CGG 0.623649 3:-82597464 None:intergenic
AGAATGAAACGAGCAACGGG+TGG 0.627136 3:-82597417 None:intergenic
ATACCATTTACATGGTCCAA+GGG 0.630829 3:-82599875 None:intergenic
CTAACCATCGTCACTGCCGA+TGG 0.637225 3:+82599347 MsG0380016371.01.T01:CDS
AGTGTCAACCCTATCCGCCA+TGG 0.645297 3:-82597142 None:intergenic
ACGAAGAATGAAACGAGCAA+CGG 0.645922 3:-82597421 None:intergenic
GAATGAAACGAGCAACGGGT+GGG 0.656669 3:-82597416 None:intergenic
CTGTTGCAAGATTAGCACAA+TGG 0.667299 3:+82597163 MsG0380016371.01.T01:CDS
CTCCATCTCTCCAACCATGG+CGG 0.697206 3:+82597128 MsG0380016371.01.T01:exon
TGGTCTGAAAGATTTATGTG+AGG 0.733733 3:+82599595 MsG0380016371.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTATAATTTTGATATAAAAA+AGG - Chr3:82599072-82599091 None:intergenic 10.0%
!! AATAGTTTAGTTAATTGTAT+GGG + Chr3:82599840-82599859 MsG0380016371.01.T01:exon 15.0%
!! ATTTATACAAATAAAATGTC+AGG - Chr3:82597547-82597566 None:intergenic 15.0%
!! TTTGTATAAATGTGATAAAA+CGG + Chr3:82597556-82597575 MsG0380016371.01.T01:intron 15.0%
!!! TTAACATTCTTATTTGAATT+TGG + Chr3:82599710-82599729 MsG0380016371.01.T01:CDS 15.0%
!!! TTTTCAATTCATTTTTTTTC+AGG + Chr3:82597319-82597338 MsG0380016371.01.T01:intron 15.0%
!! ACAATTAACTAAACTATTCT+GGG - Chr3:82599838-82599857 None:intergenic 20.0%
!! CAAAATTATAGCAATTATTC+CGG + Chr3:82599081-82599100 MsG0380016371.01.T01:intron 20.0%
!! GAATAGTTTAGTTAATTGTA+TGG + Chr3:82599839-82599858 MsG0380016371.01.T01:exon 20.0%
!! TACAATTAACTAAACTATTC+TGG - Chr3:82599839-82599858 None:intergenic 20.0%
!!! AACAAATAACGAAAAAGTTT+TGG - Chr3:82597506-82597525 None:intergenic 20.0%
!!! GATATTTAAAATAGTCTAAG+TGG - Chr3:82599039-82599058 None:intergenic 20.0%
!!! GTAATTTTTTTCCATATAGA+TGG + Chr3:82597594-82597613 MsG0380016371.01.T01:intron 20.0%
! AAACGACACTTTAGTAATTA+GGG - Chr3:82598285-82598304 None:intergenic 25.0%
! AAATAAAGATGCAATGATCA+AGG - Chr3:82598399-82598418 None:intergenic 25.0%
! AACAGTACTATTTGATATCT+TGG - Chr3:82597875-82597894 None:intergenic 25.0%
! AACTGGAAAAATGAAAGAAA+AGG + Chr3:82598907-82598926 MsG0380016371.01.T01:intron 25.0%
! AATAAAGATGCAATGATCAA+GGG - Chr3:82598398-82598417 None:intergenic 25.0%
! ACAGTACTATTTGATATCTT+GGG - Chr3:82597874-82597893 None:intergenic 25.0%
! ACATACAAATTTACGTTAGA+TGG - Chr3:82598164-82598183 None:intergenic 25.0%
! ACATTGATATACCATTTACA+TGG - Chr3:82599886-82599905 None:intergenic 25.0%
! ACTGGAAAAATGAAAGAAAA+GGG + Chr3:82598908-82598927 MsG0380016371.01.T01:intron 25.0%
! ATTAGAAACTCACATTCATA+TGG - Chr3:82598667-82598686 None:intergenic 25.0%
! CAATTAAACAAGTAGATTTC+AGG + Chr3:82599525-82599544 MsG0380016371.01.T01:CDS 25.0%
! CGAATTTATCCAAATTAGAA+TGG + Chr3:82598077-82598096 MsG0380016371.01.T01:intron 25.0%
! GAGTTAGAAATTCATAATTC+TGG - Chr3:82597623-82597642 None:intergenic 25.0%
! GTATTTGAGAAAACAAGTAT+AGG - Chr3:82598691-82598710 None:intergenic 25.0%
! TATTCGAAATCTGGTAAATT+CGG - Chr3:82598111-82598130 None:intergenic 25.0%
! TCAAATACCAATATTGATGT+AGG + Chr3:82598703-82598722 MsG0380016371.01.T01:intron 25.0%
! TGTGCAAAATATTGTCAATT+GGG + Chr3:82598956-82598975 MsG0380016371.01.T01:intron 25.0%
!! ACTTTTCAATAGTAAGGAAT+AGG + Chr3:82597343-82597362 MsG0380016371.01.T01:CDS 25.0%
!! AGATATTCCAGTAAATTTTG+TGG - Chr3:82598852-82598871 None:intergenic 25.0%
!! ATTTAAAATAGTCTAAGTGG+TGG - Chr3:82599036-82599055 None:intergenic 25.0%
!! GCATTTTCATACACATTTAA+TGG + Chr3:82597644-82597663 MsG0380016371.01.T01:intron 25.0%
!! GCTTACTTGATTTGAAATTA+GGG + Chr3:82598017-82598036 MsG0380016371.01.T01:intron 25.0%
!! TGCTTACTTGATTTGAAATT+AGG + Chr3:82598016-82598035 MsG0380016371.01.T01:intron 25.0%
!! TGTATTTGATAACCTTGATT+AGG + Chr3:82598201-82598220 MsG0380016371.01.T01:intron 25.0%
!!! GTTTTGAAACCATTCTAATT+TGG - Chr3:82598089-82598108 None:intergenic 25.0%
!!! TCAGATTTTTTGTAAGAACA+AGG - Chr3:82597207-82597226 None:intergenic 25.0%
!!! TTATTTGCTATGAGGAAATA+CGG + Chr3:82598413-82598432 MsG0380016371.01.T01:intron 25.0%
AAAACGGTAAAGTTTGTGTA+TGG + Chr3:82597572-82597591 MsG0380016371.01.T01:intron 30.0%
AAATGAAAGAAAAGGGTTGT+TGG + Chr3:82598915-82598934 MsG0380016371.01.T01:intron 30.0%
AAGATCGCTAAAAAGTTACA+CGG - Chr3:82598772-82598791 None:intergenic 30.0%
AATACCAATATTGATGTAGG+TGG + Chr3:82598706-82598725 MsG0380016371.01.T01:intron 30.0%
AATTATAGCAATTATTCCGG+AGG + Chr3:82599084-82599103 MsG0380016371.01.T01:intron 30.0%
AGATCATCTTCAACAATACT+TGG - Chr3:82597772-82597791 None:intergenic 30.0%
ATATAATGAAATGCTGATCC+AGG + Chr3:82598511-82598530 MsG0380016371.01.T01:intron 30.0%
ATTCAACATCAATGATGAAG+CGG - Chr3:82598625-82598644 None:intergenic 30.0%
CAAACGACACTTTAGTAATT+AGG - Chr3:82598286-82598305 None:intergenic 30.0%
CAATGGAAAATCGAAAACTT+CGG + Chr3:82597180-82597199 MsG0380016371.01.T01:CDS 30.0%
CAGTTACACAAGTTAAAGAA+AGG + Chr3:82599683-82599702 MsG0380016371.01.T01:CDS 30.0%
CATTCATATGGCATATCTTT+AGG - Chr3:82598655-82598674 None:intergenic 30.0%
GCAGCTAATAAGTATGATAT+TGG + Chr3:82599572-82599591 MsG0380016371.01.T01:CDS 30.0%
GCTAATAAGTATGATATTGG+TGG + Chr3:82599575-82599594 MsG0380016371.01.T01:CDS 30.0%
GTCTCTAATAGAAATTGACT+CGG + Chr3:82598223-82598242 MsG0380016371.01.T01:intron 30.0%
GTGTGCAAAATATTGTCAAT+TGG + Chr3:82598955-82598974 MsG0380016371.01.T01:intron 30.0%
TCACTTGTATATTCGAAATC+TGG - Chr3:82598120-82598139 None:intergenic 30.0%
TGTTCCTTAGAAACTTTAGA+AGG - Chr3:82597396-82597415 None:intergenic 30.0%
TTAACTAAACTATTCTGGGT+TGG - Chr3:82599834-82599853 None:intergenic 30.0%
TTCATATTGCATCCTCAATT+TGG + Chr3:82598441-82598460 MsG0380016371.01.T01:intron 30.0%
TTCTATTAGAGACCTAATCA+AGG - Chr3:82598216-82598235 None:intergenic 30.0%
TTTGCCATTGCAATTATCTA+TGG + Chr3:82598475-82598494 MsG0380016371.01.T01:intron 30.0%
! AATTCTGGAAACCATCTATA+TGG - Chr3:82597608-82597627 None:intergenic 30.0%
! GATCTATTCTTTTGAACTCA+GGG + Chr3:82599212-82599231 MsG0380016371.01.T01:intron 30.0%
! TCAGGTACTTTTCAATAGTA+AGG + Chr3:82597337-82597356 MsG0380016371.01.T01:intron 30.0%
! TGATCTATTCTTTTGAACTC+AGG + Chr3:82599211-82599230 MsG0380016371.01.T01:intron 30.0%
! TGTTTTGCATGCATTATAAC+TGG + Chr3:82598890-82598909 MsG0380016371.01.T01:intron 30.0%
! TTAGAAACTTTAGAAGGTTC+TGG - Chr3:82597390-82597409 None:intergenic 30.0%
!! AGAACCTTCTAAAGTTTCTA+AGG + Chr3:82597389-82597408 MsG0380016371.01.T01:CDS 30.0%
!! TTGCATCTTTATTTGCTATG+AGG + Chr3:82598405-82598424 MsG0380016371.01.T01:intron 30.0%
AAAATATGATACCAGTGCAG+AGG - Chr3:82599177-82599196 None:intergenic 35.0%
AAATCTGATCCTTTCAAGCT+CGG + Chr3:82597219-82597238 MsG0380016371.01.T01:CDS 35.0%
AATATTGTCAATTGGGATCG+TGG + Chr3:82598963-82598982 MsG0380016371.01.T01:intron 35.0%
ACAAGCAAACAAAAATGACC+TGG - Chr3:82598532-82598551 None:intergenic 35.0%
ACTGCCATAGATAATTGCAA+TGG - Chr3:82598482-82598501 None:intergenic 35.0%
AGGAGAAACAATAAACTTGC+GGG - Chr3:82597466-82597485 None:intergenic 35.0%
AGTTCTATATGGTCATCTGA+TGG + Chr3:82599245-82599264 MsG0380016371.01.T01:CDS 35.0%
ATACCATTTACATGGTCCAA+GGG - Chr3:82599878-82599897 None:intergenic 35.0%
ATATTGTCAATTGGGATCGT+GGG + Chr3:82598964-82598983 MsG0380016371.01.T01:intron 35.0%
ATTCCTCATTTGCCAAATTG+AGG - Chr3:82598456-82598475 None:intergenic 35.0%
CAAGTGACATGTCTTCAATA+TGG - Chr3:82599469-82599488 None:intergenic 35.0%
CAGGAGAAACAATAAACTTG+CGG - Chr3:82597467-82597486 None:intergenic 35.0%
CGGAGTTAATATCTTCAAGA+AGG - Chr3:82599625-82599644 None:intergenic 35.0%
CTCTTACTAGCTATTGTACT+CGG + Chr3:82597790-82597809 MsG0380016371.01.T01:intron 35.0%
CTGGAATATCTTGTGTATTG+TGG + Chr3:82598861-82598880 MsG0380016371.01.T01:intron 35.0%
CTGTTTGATTACCAATACAC+AGG + Chr3:82598794-82598813 MsG0380016371.01.T01:intron 35.0%
GCATAGAATACCATTTCAAG+CGG - Chr3:82598359-82598378 None:intergenic 35.0%
GCTTGTATGCAGTTTATGAA+AGG + Chr3:82598546-82598565 MsG0380016371.01.T01:intron 35.0%
GTGGATAATAGGAAGTTCAA+GGG - Chr3:82599017-82599036 None:intergenic 35.0%
TAAGCCACCTACATCAATAT+TGG - Chr3:82598713-82598732 None:intergenic 35.0%
TAGCATCTCAAGAACATTGT+CGG - Chr3:82599645-82599664 None:intergenic 35.0%
TATACCATTTACATGGTCCA+AGG - Chr3:82599879-82599898 None:intergenic 35.0%
TCAGATGACCATATAGAACT+AGG - Chr3:82599245-82599264 None:intergenic 35.0%
TCTCTATCCAATGTCTTAGA+CGG + Chr3:82598307-82598326 MsG0380016371.01.T01:intron 35.0%
TGATGTGCCACAAAATTTAC+TGG + Chr3:82598842-82598861 MsG0380016371.01.T01:intron 35.0%
TGGTCTGAAAGATTTATGTG+AGG + Chr3:82599595-82599614 MsG0380016371.01.T01:CDS 35.0%
TGTTCTTGAGATGCTAAATG+AGG + Chr3:82599649-82599668 MsG0380016371.01.T01:CDS 35.0%
TTAGGAAATTCCGCTTGAAA+TGG + Chr3:82598346-82598365 MsG0380016371.01.T01:intron 35.0%
TTGAAATGGTATTCTATGCC+TGG + Chr3:82598360-82598379 MsG0380016371.01.T01:intron 35.0%
! ACAATACTTGGTAGCATTTG+TGG - Chr3:82597760-82597779 None:intergenic 35.0%
! TGGTGCATATTTAGTTTACC+AGG - Chr3:82597486-82597505 None:intergenic 35.0%
!! AGGTTCTGGAAAAAGATGAA+TGG - Chr3:82597376-82597395 None:intergenic 35.0%
!! CTATTGTACTCGGTTTGTTA+GGG + Chr3:82597800-82597819 MsG0380016371.01.T01:intron 35.0%
!! TAGTCTAAGTGGTGGATAAT+AGG - Chr3:82599028-82599047 None:intergenic 35.0%
!! TGAAACATGCTTTGAAACAC+AGG - Chr3:82599413-82599432 None:intergenic 35.0%
AAACACTGTCTTGCATTGCT+TGG + Chr3:82599548-82599567 MsG0380016371.01.T01:CDS 40.0%
AACATGCAAGTCCTGTGTAT+TGG - Chr3:82598808-82598827 None:intergenic 40.0%
AATAAACTTGCGGGAAGAAC+CGG - Chr3:82597457-82597476 None:intergenic 40.0%
ACGAAGAATGAAACGAGCAA+CGG - Chr3:82597424-82597443 None:intergenic 40.0%
CAGTGTCAGTTCTGTATACA+GGG - Chr3:82599152-82599171 None:intergenic 40.0%
CAGTTTATGAAAGGCTGCTT+AGG + Chr3:82598555-82598574 MsG0380016371.01.T01:intron 40.0%
CATCCTCAATTTGGCAAATG+AGG + Chr3:82598450-82598469 MsG0380016371.01.T01:intron 40.0%
CATGTTTCATCACAACCTGA+AGG + Chr3:82599424-82599443 MsG0380016371.01.T01:CDS 40.0%
CCTATTGATACTGCTTTCGT+GGG + Chr3:82598599-82598618 MsG0380016371.01.T01:CDS 40.0%
CTATTCAAGAGATCATCCTC+CGG - Chr3:82599103-82599122 None:intergenic 40.0%
CTGTTGCAAGATTAGCACAA+TGG + Chr3:82597163-82597182 MsG0380016371.01.T01:CDS 40.0%
GCTCTTCGAAGTTACTTGTA+TGG + Chr3:82599500-82599519 MsG0380016371.01.T01:CDS 40.0%
GGATCGACTATAGTGATCTT+AGG + Chr3:82598328-82598347 MsG0380016371.01.T01:intron 40.0%
GGTGGATAATAGGAAGTTCA+AGG - Chr3:82599018-82599037 None:intergenic 40.0%
TCAGTGTCAGTTCTGTATAC+AGG - Chr3:82599153-82599172 None:intergenic 40.0%
TGGGAAAATTACTATGCCCT+TGG + Chr3:82599859-82599878 MsG0380016371.01.T01:three_prime_UTR 40.0%
TTGAGATGCTAAATGAGGCT+TGG + Chr3:82599654-82599673 MsG0380016371.01.T01:CDS 40.0%
! ATACTTGGTAGCATTTGTGG+TGG - Chr3:82597757-82597776 None:intergenic 40.0%
! CGCAAGTTTATTGTTTCTCC+TGG + Chr3:82597465-82597484 MsG0380016371.01.T01:CDS 40.0%
! CGCTTACTCAGCTTTTACTT+TGG + Chr3:82599929-82599948 MsG0380016371.01.T01:three_prime_UTR 40.0%
! CTATTCTTTTGAACTCAGGG+TGG + Chr3:82599215-82599234 MsG0380016371.01.T01:intron 40.0%
! GCTATTGTACTCGGTTTGTT+AGG + Chr3:82597799-82597818 MsG0380016371.01.T01:intron 40.0%
! TTGACGACTCTTTTTCCTTC+AGG - Chr3:82599442-82599461 None:intergenic 40.0%
!! GTGGTGAACCTAGTTCTATA+TGG + Chr3:82599234-82599253 MsG0380016371.01.T01:CDS 40.0%
AGCATTTGTGGTGGTTCGTA+GGG - Chr3:82597748-82597767 None:intergenic 45.0%
ATCCTTTCAAGCTCGGAATC+TGG + Chr3:82597226-82597245 MsG0380016371.01.T01:CDS 45.0%
ATGCAATGATCAAGGGAGAC+AGG - Chr3:82598391-82598410 None:intergenic 45.0%
ATGCCCTTGGACCATGTAAA+TGG + Chr3:82599872-82599891 MsG0380016371.01.T01:three_prime_UTR 45.0%
CCCACGAAAGCAGTATCAAT+AGG - Chr3:82598602-82598621 None:intergenic 45.0%
CGAAGAATGAAACGAGCAAC+GGG - Chr3:82597423-82597442 None:intergenic 45.0%
GCCTATTGATACTGCTTTCG+TGG + Chr3:82598598-82598617 MsG0380016371.01.T01:CDS 45.0%
GGACACAAGATGACTTTGTC+TGG + Chr3:82598576-82598595 MsG0380016371.01.T01:CDS 45.0%
GGATTCCCTCTAACAGAATC+GGG - Chr3:82597840-82597859 None:intergenic 45.0%
GGGATTCCCTCTAACAGAAT+CGG - Chr3:82597841-82597860 None:intergenic 45.0%
GTGAGCTCTCAATGTACCAT+CGG - Chr3:82599366-82599385 None:intergenic 45.0%
TAGCATTTGTGGTGGTTCGT+AGG - Chr3:82597749-82597768 None:intergenic 45.0%
TGCAATGATCAAGGGAGACA+GGG - Chr3:82598390-82598409 None:intergenic 45.0%
TGGTACATTGAGAGCTCACA+AGG + Chr3:82599367-82599386 MsG0380016371.01.T01:CDS 45.0%
TGTCACCCGATTCTGTTAGA+GGG + Chr3:82597832-82597851 MsG0380016371.01.T01:intron 45.0%
TTCCAGATTCCGAGCTTGAA+AGG - Chr3:82597231-82597250 None:intergenic 45.0%
! AGTCGATCCGTCTAAGACAT+TGG - Chr3:82598317-82598336 None:intergenic 45.0%
!! GCTTTGAAACACAGGAGAAC+TGG - Chr3:82599405-82599424 None:intergenic 45.0%
!!! ACCTTTTTCAGCACGCAGAT+AGG + Chr3:82599768-82599787 MsG0380016371.01.T01:CDS 45.0%
!!! CCTTTTTCAGCACGCAGATA+GGG + Chr3:82599769-82599788 MsG0380016371.01.T01:CDS 45.0%
ACACTCCATCTCTCCAACCA+TGG + Chr3:82597125-82597144 MsG0380016371.01.T01:exon 50.0%
AGAATGAAACGAGCAACGGG+TGG - Chr3:82597420-82597439 None:intergenic 50.0%
ATATCTTGGGCACTCCACAC+GGG - Chr3:82597861-82597880 None:intergenic 50.0%
ATTCTTCGTGTCTCCGTTGC+CGG + Chr3:82597435-82597454 MsG0380016371.01.T01:CDS 50.0%
ATTTGTGGTGGTTCGTAGGG+CGG - Chr3:82597745-82597764 None:intergenic 50.0%
CAATGATCAAGGGAGACAGG+GGG - Chr3:82598388-82598407 None:intergenic 50.0%
CCCTATCTGCGTGCTGAAAA+AGG - Chr3:82599772-82599791 None:intergenic 50.0%
CGACTCAATCACTTTGCGCT+GGG - Chr3:82598749-82598768 None:intergenic 50.0%
CGCAGATAGGGAGCTAGTTA+TGG + Chr3:82599781-82599800 MsG0380016371.01.T01:CDS 50.0%
CTCTAACAGAATCGGGTGAC+AGG - Chr3:82597833-82597852 None:intergenic 50.0%
CTGTCACCCGATTCTGTTAG+AGG + Chr3:82597831-82597850 MsG0380016371.01.T01:intron 50.0%
GAATGAAACGAGCAACGGGT+GGG - Chr3:82597419-82597438 None:intergenic 50.0%
GATATCTTGGGCACTCCACA+CGG - Chr3:82597862-82597881 None:intergenic 50.0%
GCAATGATCAAGGGAGACAG+GGG - Chr3:82598389-82598408 None:intergenic 50.0%
GTAACTTCGAAGAGCAGTGC+AGG - Chr3:82599495-82599514 None:intergenic 50.0%
GTATAGCCTCATCGAGCATG+CGG - Chr3:82599319-82599338 None:intergenic 50.0%
TATAGCCTCATCGAGCATGC+GGG - Chr3:82599318-82599337 None:intergenic 50.0%
! TCAAGCTCGGAATCTGGAAC+TGG + Chr3:82597232-82597251 MsG0380016371.01.T01:CDS 50.0%
AGTGTCAACCCTATCCGCCA+TGG - Chr3:82597145-82597164 None:intergenic 55.0%
ATCCGCCATGGTTGGAGAGA+TGG - Chr3:82597133-82597152 None:intergenic 55.0%
CATCGGCAGTGACGATGGTT+AGG - Chr3:82599349-82599368 None:intergenic 55.0%
CTAACCATCGTCACTGCCGA+TGG + Chr3:82599347-82599366 MsG0380016371.01.T01:CDS 55.0%
CTCCATCTCTCCAACCATGG+CGG + Chr3:82597128-82597147 MsG0380016371.01.T01:exon 55.0%
CTGACACTGAACCTCTGCAC+TGG + Chr3:82599163-82599182 MsG0380016371.01.T01:intron 55.0%
CTGTTAGAGGGAATCCCGTG+TGG + Chr3:82597844-82597863 MsG0380016371.01.T01:intron 55.0%
GCGACTCAATCACTTTGCGC+TGG - Chr3:82598750-82598769 None:intergenic 55.0%
TCAACCCTATCCGCCATGGT+TGG - Chr3:82597141-82597160 None:intergenic 55.0%
TGTACCATCGGCAGTGACGA+TGG - Chr3:82599354-82599373 None:intergenic 55.0%
!! CTCTCCAACCATGGCGGATA+GGG + Chr3:82597134-82597153 MsG0380016371.01.T01:exon 55.0%
!! TCTCTCCAACCATGGCGGAT+AGG + Chr3:82597133-82597152 MsG0380016371.01.T01:exon 55.0%
CTTGCGGGAAGAACCGGCAA+CGG - Chr3:82597451-82597470 None:intergenic 60.0%
CCTCATCGAGCATGCGGGAG+AGG - Chr3:82599313-82599332 None:intergenic 65.0%
CCTCTCCCGCATGCTCGATG+AGG + Chr3:82599310-82599329 MsG0380016371.01.T01:CDS 65.0%
CGAGCATGCGGGAGAGGCAA+TGG - Chr3:82599307-82599326 None:intergenic 65.0%
GGTTCGTAGGGCGGCGTGAA+AGG - Chr3:82597736-82597755 None:intergenic 65.0%
!! CAAGGGAGACAGGGGGCACC+AGG - Chr3:82598381-82598400 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 82597083 82599949 82597083 ID=MsG0380016371.01;Name=MsG0380016371.01
Chr3 mRNA 82597083 82599949 82597083 ID=MsG0380016371.01.T01;Parent=MsG0380016371.01;Name=MsG0380016371.01.T01;_AED=0.31;_eAED=0.31;_QI=61|1|1|1|1|1|4|105|327
Chr3 exon 82597083 82597253 82597083 ID=MsG0380016371.01.T01:exon:10897;Parent=MsG0380016371.01.T01
Chr3 exon 82597341 82597486 82597341 ID=MsG0380016371.01.T01:exon:10898;Parent=MsG0380016371.01.T01
Chr3 exon 82598558 82598673 82598558 ID=MsG0380016371.01.T01:exon:10899;Parent=MsG0380016371.01.T01
Chr3 exon 82599233 82599949 82599233 ID=MsG0380016371.01.T01:exon:10900;Parent=MsG0380016371.01.T01
Chr3 five_prime_UTR 82597083 82597143 82597083 ID=MsG0380016371.01.T01:five_prime_utr;Parent=MsG0380016371.01.T01
Chr3 CDS 82597144 82597253 82597144 ID=MsG0380016371.01.T01:cds;Parent=MsG0380016371.01.T01
Chr3 CDS 82597341 82597486 82597341 ID=MsG0380016371.01.T01:cds;Parent=MsG0380016371.01.T01
Chr3 CDS 82598558 82598673 82598558 ID=MsG0380016371.01.T01:cds;Parent=MsG0380016371.01.T01
Chr3 CDS 82599233 82599844 82599233 ID=MsG0380016371.01.T01:cds;Parent=MsG0380016371.01.T01
Chr3 three_prime_UTR 82599845 82599949 82599845 ID=MsG0380016371.01.T01:three_prime_utr;Parent=MsG0380016371.01.T01
Gene Sequence

>MsG0380016371.01.T01

ATGGCGGATAGGGTTGACACTGTTGCAAGATTAGCACAATGGAAAATCGAAAACTTCGGTCCTTGTTCTTACAAAAAATCTGATCCTTTCAAGCTCGGAATCTGGAACTGGTACTTTTCAATAGTAAGGAATAGGTTTTTCTCCATTCATCTTTTTCCAGAACCTTCTAAAGTTTCTAAGGAACACCCACCCGTTGCTCGTTTCATTCTTCGTGTCTCCGTTGCCGGTTCTTCCCGCAAGTTTATTGTTTCTCCTGTTTATGAAAGGCTGCTTAGGACACAAGATGACTTTGTCTGGCCTATTGATACTGCTTTCGTGGGCCGCTTCATCATTGATGTTGAATTTCTTGACCTAAAGATATGCCATATGAATGGTGGTGAACCTAGTTCTATATGGTCATCTGATGGAACTTCGCAATGCAATGAAGCTCAAAGAAGTACTCTCCATTGCCTCTCCCGCATGCTCGATGAGGCTATACATGCTGACCTAACCATCGTCACTGCCGATGGTACATTGAGAGCTCACAAGGCAATTTTGTCTGCCAGTTCTCCTGTGTTTCAAAGCATGTTTCATCACAACCTGAAGGAAAAAGAGTCGTCAACAATCCATATTGAAGACATGTCACTTGAATCCTGCACTGCTCTTCGAAGTTACTTGTATGGAGCAATTAAACAAGTAGATTTCAGGAAACACTGTCTTGCATTGCTTGGAGCAGCTAATAAGTATGATATTGGTGGTCTGAAAGATTTATGTGAGGAAAACCTTCTTGAAGATATTAACTCCGACAATGTTCTTGAGATGCTAAATGAGGCTTGGCTTTATCAGTTACACAAGTTAAAGAAAGGATGTTTAACATTCTTATTTGAATTTGGTAAAATATATGATGTTAAAACTGATGAAATAAATAACCTTTTTCAGCACGCAGATAGGGAGCTAGTTATGGAGATGTTTCATGTGATGCTTACAATTTCCAACCCAGAATAG
Protein sequence

>MsG0380016371.01.T01

MADRVDTVARLAQWKIENFGPCSYKKSDPFKLGIWNWYFSIVRNRFFSIHLFPEPSKVSKEHPPVARFILRVSVAGSSRKFIVSPVYERLLRTQDDFVWPIDTAFVGRFIIDVEFLDLKICHMNGGEPSSIWSSDGTSQCNEAQRSTLHCLSRMLDEAIHADLTIVTADGTLRAHKAILSASSPVFQSMFHHNLKEKESSTIHIEDMSLESCTALRSYLYGAIKQVDFRKHCLALLGAANKYDIGGLKDLCEENLLEDINSDNVLEMLNEAWLYQLHKLKKGCLTFLFEFGKIYDVKTDEINNLFQHADRELVMEMFHVMLTISNPE*