AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016470.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016470.01.T01 MTR_3g090130 86.498 474 24 3 39 481 1 465 0.0 827
MsG0380016470.01.T01 MTR_5g072570 74.788 472 84 2 39 479 1 468 0.0 732
MsG0380016470.01.T01 MTR_3g090150 73.418 474 89 3 39 479 1 470 0.0 717
MsG0380016470.01.T01 MTR_3g434850 41.447 456 224 6 50 472 9 454 1.93e-120 360
MsG0380016470.01.T01 MTR_7g021130 42.627 434 209 6 72 472 31 457 6.74e-120 359
MsG0380016470.01.T01 MTR_3g498755 41.324 438 217 6 70 472 13 445 1.42e-116 350
MsG0380016470.01.T01 MTR_8g099930 42.009 438 216 6 70 474 32 464 1.42e-116 351
MsG0380016470.01.T01 MTR_2g449850 41.055 436 213 6 73 474 39 464 5.97e-109 331
MsG0380016470.01.T01 MTR_3g079590 43.088 434 193 10 68 468 74 486 2.13e-102 315
MsG0380016470.01.T01 MTR_1g102130 39.956 453 259 10 32 477 50 496 6.62e-102 314
MsG0380016470.01.T01 MTR_3g079570 42.857 441 191 12 68 472 75 490 1.59e-100 310
MsG0380016470.01.T01 MTR_1g040370 38.288 444 192 7 62 472 21 415 2.15e-99 305
MsG0380016470.01.T01 MTR_7g013790 37.844 473 242 7 44 476 8 468 2.16e-99 306
MsG0380016470.01.T01 MTR_3g034290 38.202 445 226 6 64 476 67 494 2.05e-98 305
MsG0380016470.01.T01 MTR_3g079560 42.282 447 198 12 64 474 70 492 2.14e-98 305
MsG0380016470.01.T01 MTR_4g075150 38.526 475 235 11 39 472 3 461 4.11e-98 303
MsG0380016470.01.T01 MTR_4g075150 38.526 475 237 11 39 472 3 463 5.52e-98 303
MsG0380016470.01.T01 MTR_3g079600 40.980 449 211 12 64 478 68 496 3.42e-97 302
MsG0380016470.01.T01 MTR_4g089155 38.085 449 225 8 68 474 50 487 1.35e-96 300
MsG0380016470.01.T01 MTR_0003s0560 38.322 441 221 7 64 472 66 487 4.59e-95 296
MsG0380016470.01.T01 MTR_3g079620 40.088 454 204 13 68 478 74 502 2.09e-94 295
MsG0380016470.01.T01 MTR_1g095560 38.025 476 239 11 39 475 1 459 3.06e-93 290
MsG0380016470.01.T01 MTR_2g012860 38.739 444 223 9 70 473 40 474 6.66e-93 290
MsG0380016470.01.T01 MTR_2g012850 37.444 446 228 7 69 474 33 467 9.46e-93 290
MsG0380016470.01.T01 MTR_3g079630 40.351 456 201 13 68 478 74 503 7.87e-92 288
MsG0380016470.01.T01 MTR_2g063000 38.462 403 231 8 75 472 42 432 1.14e-91 286
MsG0380016470.01.T01 MTR_1g021010 40.367 436 200 12 72 472 76 486 3.87e-91 286
MsG0380016470.01.T01 MTR_4g122950 35.381 472 234 11 59 476 27 481 1.13e-89 282
MsG0380016470.01.T01 MTR_1g020090 40.363 441 196 12 69 472 87 497 1.51e-89 282
MsG0380016470.01.T01 MTR_1g021020 40.091 439 202 12 69 472 75 487 9.85e-89 280
MsG0380016470.01.T01 MTR_4g122960 35.897 468 235 11 58 475 26 478 6.17e-87 275
MsG0380016470.01.T01 MTR_1g095560 35.630 508 239 12 39 475 1 491 1.62e-86 274
MsG0380016470.01.T01 MTR_2g062990 36.343 432 229 9 75 472 43 462 5.06e-86 272
MsG0380016470.01.T01 MTR_2g081620 35.535 439 237 9 75 479 44 470 1.12e-85 271
MsG0380016470.01.T01 MTR_2g063000 35.253 434 233 8 75 472 42 463 2.22e-85 271
MsG0380016470.01.T01 MTR_1g095540 36.809 470 241 11 44 474 6 458 1.10e-84 268
MsG0380016470.01.T01 MTR_2g062980 34.873 433 234 9 75 472 43 462 5.14e-83 265
MsG0380016470.01.T01 MTR_3g034290 37.183 355 178 5 64 386 67 408 7.73e-74 239
MsG0380016470.01.T01 MTR_0075s0010 35.890 365 179 9 68 420 4 325 7.15e-66 215
MsG0380016470.01.T01 MTR_0003s0560 39.850 266 120 4 64 297 66 323 8.87e-59 197
MsG0380016470.01.T01 MTR_7g051430 28.740 508 262 13 44 468 2 492 5.72e-55 191
MsG0380016470.01.T01 MTR_8g011350 27.921 505 269 14 45 471 8 495 2.04e-51 182
MsG0380016470.01.T01 MTR_7g080180 28.402 507 268 17 48 471 4 498 7.13e-51 181
MsG0380016470.01.T01 MTR_8g011350 27.197 478 253 14 45 444 8 468 3.64e-43 159
MsG0380016470.01.T01 MTR_4g021490 27.211 441 260 14 72 466 40 465 2.55e-39 148
MsG0380016470.01.T01 MTR_2g018630 27.964 447 259 14 71 471 36 465 6.41e-39 147
MsG0380016470.01.T01 MTR_7g080180 27.312 465 243 17 48 429 4 456 8.91e-39 147
MsG0380016470.01.T01 MTR_4g021520 27.354 446 253 17 72 466 40 465 1.02e-38 147
MsG0380016470.01.T01 MTR_4g021535 27.765 443 254 19 47 466 15 414 1.74e-38 145
MsG0380016470.01.T01 MTR_4g021510 28.539 445 249 17 72 466 39 464 4.00e-38 145
MsG0380016470.01.T01 MTR_4g021535 26.427 473 269 18 47 466 15 461 4.76e-38 145
MsG0380016470.01.T01 MTR_2g018600 26.932 453 263 14 71 471 33 469 5.09e-38 145
MsG0380016470.01.T01 MTR_2g018590 26.866 469 274 14 56 471 17 469 1.00e-37 144
MsG0380016470.01.T01 MTR_4g021530 25.785 446 260 17 72 466 40 465 9.63e-37 141
MsG0380016470.01.T01 MTR_4g021500 26.077 441 263 16 72 465 40 464 1.18e-34 138
MsG0380016470.01.T01 MTR_4g021500 26.852 432 242 17 78 466 482 882 9.55e-33 132
MsG0380016470.01.T01 MTR_7g051430 32.215 298 157 8 44 304 2 291 1.21e-34 134
MsG0380016470.01.T01 MTR_4g021500 26.077 441 263 16 72 465 40 464 1.26e-34 138
MsG0380016470.01.T01 MTR_4g021500 27.273 440 248 16 78 466 482 900 7.32e-34 136
MsG0380016470.01.T01 MTR_3g100420 26.501 483 284 16 47 471 27 496 3.10e-32 129
MsG0380016470.01.T01 MTR_1g050545 27.103 428 242 12 83 468 81 480 1.81e-30 124
MsG0380016470.01.T01 MTR_8g007520 78.571 70 15 0 357 426 111 180 6.63e-30 115
MsG0380016470.01.T01 MTR_4g057585 26.279 430 255 14 77 468 87 492 1.11e-29 121
MsG0380016470.01.T01 MTR_4g057595 26.366 421 249 13 85 468 97 493 7.47e-29 119
MsG0380016470.01.T01 MTR_4g021520 26.895 409 228 17 72 429 40 428 1.06e-28 118
MsG0380016470.01.T01 MTR_2g095750 25.342 438 245 14 82 471 97 500 3.21e-28 117
MsG0380016470.01.T01 MTR_4g057570 25.986 431 248 14 83 469 87 490 3.92e-27 114
MsG0380016470.01.T01 MTR_2g095730 24.888 446 258 11 65 469 86 495 6.97e-27 114
MsG0380016470.01.T01 MTR_1g094155 26.066 422 253 12 83 468 88 486 7.50e-26 110
MsG0380016470.01.T01 MTR_3g045770 23.202 431 279 12 71 461 26 444 1.46e-25 109
MsG0380016470.01.T01 MTR_4g057600 23.990 421 261 12 85 469 95 492 3.76e-23 102
MsG0380016470.01.T01 MTR_4g084710 23.503 451 265 16 79 481 37 455 8.63e-23 101
MsG0380016470.01.T01 MTR_5g097180 24.824 427 247 16 87 471 43 437 1.52e-22 100
MsG0380016470.01.T01 MTR_2g018630 25.770 357 209 11 155 471 20 360 5.44e-22 97.4
MsG0380016470.01.T01 MTR_2g009200 24.714 437 263 18 70 467 26 435 3.72e-21 96.3
MsG0380016470.01.T01 MTR_1g051175 50.588 85 39 2 79 162 20 102 5.27e-19 87.4
MsG0380016470.01.T01 MTR_2g095710 23.223 422 275 11 76 471 85 483 5.17e-17 84.0
MsG0380016470.01.T01 MTR_7g100560 29.444 180 92 3 78 257 65 209 7.94e-16 79.0
MsG0380016470.01.T01 MTR_6g086380 66.667 45 15 0 431 475 56 100 4.45e-13 65.5
MsG0380016470.01.T01 MTR_4g122970 40.000 80 41 4 42 118 12 87 8.35e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016470.01.T01 AT5G42240 67.834 457 116 1 56 481 17 473 0.0 642
MsG0380016470.01.T01 AT1G43780 65.702 449 122 2 63 479 29 477 0.0 632
MsG0380016470.01.T01 AT5G42230 63.415 451 134 1 56 475 13 463 0.0 600
MsG0380016470.01.T01 AT5G42230 63.415 451 134 1 56 475 13 463 0.0 600
MsG0380016470.01.T01 AT2G12480 62.931 464 130 5 50 479 7 462 0.0 597
MsG0380016470.01.T01 AT2G12480 59.698 464 121 6 50 479 7 438 0.0 553
MsG0380016470.01.T01 AT2G12480 59.267 464 121 6 50 479 7 436 0.0 548
MsG0380016470.01.T01 AT2G12480 59.140 465 121 7 50 479 7 437 0.0 543
MsG0380016470.01.T01 AT2G33530 43.936 437 207 5 70 473 32 463 4.94e-126 375
MsG0380016470.01.T01 AT1G28110 43.119 436 208 6 70 472 30 458 6.90e-120 359
MsG0380016470.01.T01 AT1G28110 43.119 436 208 6 70 472 30 458 6.90e-120 359
MsG0380016470.01.T01 AT4G30610 39.666 479 231 10 39 474 1 464 1.04e-101 313
MsG0380016470.01.T01 AT2G24000 40.225 445 212 8 69 471 28 460 5.13e-100 308
MsG0380016470.01.T01 AT3G63470 38.158 456 229 9 55 476 65 501 1.56e-98 305
MsG0380016470.01.T01 AT3G02110 37.764 474 236 9 44 472 12 471 2.71e-98 304
MsG0380016470.01.T01 AT5G23210 38.841 466 202 12 70 472 50 495 1.00e-97 303
MsG0380016470.01.T01 AT2G24010 39.408 439 220 7 69 474 28 453 6.40e-97 300
MsG0380016470.01.T01 AT4G30810 36.617 467 250 7 40 471 6 461 6.11e-94 293
MsG0380016470.01.T01 AT5G08260 36.797 462 232 8 60 473 28 477 7.99e-93 290
MsG0380016470.01.T01 AT1G61130 38.375 443 225 10 68 472 28 460 1.80e-92 289
MsG0380016470.01.T01 AT2G24010 37.885 454 221 8 69 474 28 468 6.88e-92 287
MsG0380016470.01.T01 AT2G35780 38.864 440 218 10 69 472 27 451 3.11e-91 285
MsG0380016470.01.T01 AT1G11080 37.802 455 219 10 69 472 48 489 5.42e-90 283
MsG0380016470.01.T01 AT1G11080 37.802 455 219 10 69 472 48 489 5.88e-90 283
MsG0380016470.01.T01 AT2G35770 37.363 455 231 10 57 474 23 460 3.40e-89 280
MsG0380016470.01.T01 AT3G07990 36.652 442 233 8 68 474 30 459 4.64e-88 277
MsG0380016470.01.T01 AT4G15100 37.448 478 243 10 43 474 16 483 1.28e-87 277
MsG0380016470.01.T01 AT2G24000 39.225 413 198 8 69 471 28 397 2.46e-86 271
MsG0380016470.01.T01 AT2G24010 36.268 477 218 11 71 474 1 464 5.30e-85 270
MsG0380016470.01.T01 AT3G17180 36.681 458 220 11 70 474 37 477 9.09e-85 269
MsG0380016470.01.T01 AT3G52020 36.591 440 227 10 70 474 78 500 5.64e-84 268
MsG0380016470.01.T01 AT2G05850 36.036 444 228 8 69 474 61 486 2.28e-83 266
MsG0380016470.01.T01 AT3G52000 35.068 442 230 10 69 474 61 481 1.96e-81 261
MsG0380016470.01.T01 AT5G23210 37.381 420 181 11 70 426 50 450 1.54e-80 258
MsG0380016470.01.T01 AT3G52010 36.180 445 225 10 69 474 62 486 5.46e-80 257
MsG0380016470.01.T01 AT5G23210 35.577 416 185 12 120 472 5 400 6.94e-72 233
MsG0380016470.01.T01 AT5G23210 35.437 412 183 12 124 472 8 399 1.26e-70 230
MsG0380016470.01.T01 AT3G17180 34.634 410 198 11 70 426 37 429 1.11e-64 216
MsG0380016470.01.T01 AT2G24010 35.714 364 178 6 71 386 1 356 4.36e-64 212
MsG0380016470.01.T01 AT4G12910 29.134 508 279 15 34 471 1 497 1.43e-55 193
MsG0380016470.01.T01 AT5G23210 33.333 366 162 11 124 426 8 354 2.25e-53 184
MsG0380016470.01.T01 AT3G25420 28.216 482 257 11 67 471 25 494 2.73e-48 173
MsG0380016470.01.T01 AT4G12910 28.112 466 254 15 34 429 1 455 1.54e-42 157
MsG0380016470.01.T01 AT2G22920 29.075 454 227 18 71 471 24 435 1.36e-39 148
MsG0380016470.01.T01 AT3G56540 57.724 123 50 2 69 190 77 198 3.63e-39 143
MsG0380016470.01.T01 AT1G33540 25.835 449 273 14 71 471 28 464 4.51e-38 145
MsG0380016470.01.T01 AT1G73300 27.477 444 245 15 71 471 32 441 1.87e-37 142
MsG0380016470.01.T01 AT1G73300 27.477 444 245 15 71 471 32 441 1.87e-37 142
MsG0380016470.01.T01 AT1G33540 25.814 430 260 13 89 471 4 421 4.54e-37 141
MsG0380016470.01.T01 AT1G73290 27.955 440 246 14 71 471 31 438 8.82e-37 140
MsG0380016470.01.T01 AT5G09640 28.510 463 246 18 71 471 26 465 1.02e-36 141
MsG0380016470.01.T01 AT2G22990 26.637 443 252 14 71 471 22 433 1.39e-36 140
MsG0380016470.01.T01 AT5G36180 27.149 442 249 16 71 471 32 441 9.16e-36 138
MsG0380016470.01.T01 AT2G23000 27.130 446 248 17 71 471 24 437 1.21e-35 137
MsG0380016470.01.T01 AT2G23000 27.130 446 248 17 71 471 24 437 1.21e-35 137
MsG0380016470.01.T01 AT2G22970 27.540 443 246 16 71 471 24 433 2.46e-35 137
MsG0380016470.01.T01 AT1G73280 26.531 441 253 14 71 471 32 441 2.99e-35 137
MsG0380016470.01.T01 AT2G22980 26.471 442 248 17 71 471 25 430 7.97e-35 135
MsG0380016470.01.T01 AT1G73310 25.799 438 260 13 71 471 32 441 1.74e-34 134
MsG0380016470.01.T01 AT1G73270 26.742 445 247 17 71 471 32 441 2.21e-34 134
MsG0380016470.01.T01 AT3G10450 27.130 446 244 16 71 471 28 437 2.94e-34 134
MsG0380016470.01.T01 AT1G73270 26.742 445 247 17 71 471 32 441 3.10e-34 134
MsG0380016470.01.T01 AT3G45010 26.869 428 258 13 77 469 92 499 4.69e-34 134
MsG0380016470.01.T01 AT2G23010 25.169 445 258 12 71 471 24 437 2.74e-33 131
MsG0380016470.01.T01 AT3G12203 27.231 437 246 15 75 471 12 416 2.82e-33 130
MsG0380016470.01.T01 AT3G12203 27.231 437 246 15 75 471 33 437 3.37e-33 130
MsG0380016470.01.T01 AT3G12240 25.624 441 257 15 71 471 27 436 7.10e-33 130
MsG0380016470.01.T01 AT2G23010 24.944 445 259 12 71 471 24 437 1.31e-32 129
MsG0380016470.01.T01 AT3G10450 26.932 427 232 15 89 471 4 394 1.44e-32 128
MsG0380016470.01.T01 AT2G22990 26.379 417 235 13 71 445 22 408 1.90e-31 125
MsG0380016470.01.T01 AT2G22990 26.316 418 236 13 71 446 22 409 2.12e-31 126
MsG0380016470.01.T01 AT2G22970 27.685 419 229 15 71 447 24 410 2.93e-31 125
MsG0380016470.01.T01 AT3G12230 25.624 441 257 16 71 471 26 435 3.21e-31 125
MsG0380016470.01.T01 AT3G12220 25.170 441 259 15 71 471 26 435 3.71e-31 125
MsG0380016470.01.T01 AT2G22980 26.139 417 232 16 71 446 25 406 4.75e-31 124
MsG0380016470.01.T01 AT2G22970 27.512 418 229 15 71 446 24 409 6.10e-31 124
MsG0380016470.01.T01 AT3G12203 27.251 411 228 14 100 471 1 379 6.99e-31 123
MsG0380016470.01.T01 AT2G22920 28.297 417 205 17 71 434 24 399 1.35e-30 123
MsG0380016470.01.T01 AT2G22980 26.442 416 230 16 71 445 25 405 1.44e-30 123
MsG0380016470.01.T01 AT2G22990 25.959 443 246 15 71 471 22 424 1.89e-30 123
MsG0380016470.01.T01 AT5G22980 25.747 435 260 12 82 480 95 502 3.61e-30 123
MsG0380016470.01.T01 AT3G12220 25.118 422 246 14 89 471 15 405 1.11e-29 120
MsG0380016470.01.T01 AT3G10450 26.841 421 228 15 71 446 28 413 1.42e-29 120
MsG0380016470.01.T01 AT3G10410 26.207 435 262 14 77 475 90 501 3.66e-28 117
MsG0380016470.01.T01 AT3G10450 26.617 402 216 14 89 446 4 370 4.54e-28 115
MsG0380016470.01.T01 AT1G73290 26.750 400 223 13 71 431 31 399 1.36e-27 114
MsG0380016470.01.T01 AT1G73310 24.940 417 245 13 71 446 32 421 3.20e-26 110
MsG0380016470.01.T01 AT2G22920 33.036 224 108 7 71 255 24 244 2.65e-23 100
MsG0380016470.01.T01 AT2G22970 32.143 224 109 7 71 255 24 243 7.84e-22 96.7
MsG0380016470.01.T01 AT1G73290 31.250 224 112 7 71 255 31 251 3.00e-21 94.7
MsG0380016470.01.T01 AT1G15000 24.711 433 257 13 76 471 26 426 3.93e-21 96.3
MsG0380016470.01.T01 AT1G73280 28.889 225 122 5 71 258 32 255 1.70e-20 93.6
MsG0380016470.01.T01 AT2G22980 27.612 268 141 11 71 297 25 280 1.43e-19 90.5
MsG0380016470.01.T01 AT5G36180 24.725 364 208 13 143 471 7 339 1.79e-19 90.1
MsG0380016470.01.T01 AT5G36180 24.725 364 208 13 143 471 7 339 1.79e-19 90.1
MsG0380016470.01.T01 AT1G73280 23.810 357 208 11 149 471 13 339 1.84e-19 89.7
MsG0380016470.01.T01 AT2G22920 27.458 295 157 13 193 471 3 256 3.69e-18 84.7
MsG0380016470.01.T01 AT1G73280 23.547 344 199 11 162 471 1 314 1.98e-17 83.6
MsG0380016470.01.T01 AT3G12220 25.455 220 126 5 71 253 26 244 3.95e-15 77.4
MsG0380016470.01.T01 AT2G22980 22.910 323 180 13 159 446 1 289 1.08e-13 72.0

Find 124 sgRNAs with CRISPR-Local

Find 408 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAAAATCATATTCCAATA+TGG 0.199431 3:-83901126 MsG0380016470.01.T01:CDS
TGGAAACCCACTTCTGAAAA+TGG 0.247519 3:-83902137 MsG0380016470.01.T01:CDS
AGTTTCAAGTTCAACATAAA+AGG 0.261935 3:-83902330 MsG0380016470.01.T01:CDS
ATATTCCAATATGGGTTTAT+AGG 0.279113 3:-83901117 MsG0380016470.01.T01:intron
AGCTTGTTGGTAACAACAAT+TGG 0.326510 3:-83904039 MsG0380016470.01.T01:CDS
TGCCATATGGACAACCTTCT+AGG 0.327165 3:-83900696 MsG0380016470.01.T01:CDS
CCATCACCAGAAGGATAAAA+TGG 0.329912 3:+83903332 None:intergenic
ATGAAATTGGTCTTGCCATT+AGG 0.331349 3:-83902060 MsG0380016470.01.T01:CDS
TTACAGACTCATATAGAGTT+TGG 0.337975 3:-83900921 MsG0380016470.01.T01:CDS
GATTCAGTTGTTCCATTACT+AGG 0.346899 3:-83900991 MsG0380016470.01.T01:CDS
GGAGGTTGGGTAACTGAGTA+TGG 0.355586 3:-83900763 MsG0380016470.01.T01:CDS
TGAACTATCCGTTTGAGAAT+TGG 0.357516 3:+83901145 None:intergenic
CATATACATACCTGTATTCC+AGG 0.358264 3:+83903283 None:intergenic
TCAAAATCATATTCCAATAT+GGG 0.358601 3:-83901125 MsG0380016470.01.T01:CDS
TTCACAACTAGATCTTCAAT+TGG 0.361948 3:+83904003 None:intergenic
CTACACATGCCCCATGGATA+TGG 0.362091 3:+83901662 None:intergenic
AGTTTCCAATCTCCTCTTTG+TGG 0.370612 3:-83903001 MsG0380016470.01.T01:CDS
AACTACCTATAAACCCATAT+TGG 0.374766 3:+83901112 None:intergenic
TACAATTCATTCTCCAATTG+AGG 0.378099 3:+83900615 None:intergenic
AAGCAACATATGAATATTAC+TGG 0.389075 3:-83902102 MsG0380016470.01.T01:CDS
GTGTTGTTTGTGGTGGCATA+TGG 0.390969 3:-83904063 MsG0380016470.01.T01:CDS
CTGGTCACACGGAATGATTT+CGG 0.395080 3:-83902083 MsG0380016470.01.T01:CDS
ATTGAGGGTTTAGTAGTGTT+TGG 0.395143 3:+83900631 None:intergenic
GCCCTAGAAGGTTGTCCATA+TGG 0.398512 3:+83900694 None:intergenic
ATATATTTACCTGCCCTTTG+TGG 0.407790 3:+83900896 None:intergenic
CTCTTTGTGGAGTCTCCCGC+TGG 0.412475 3:-83902988 MsG0380016470.01.T01:CDS
GGAATGATTTCGGATGAAAT+TGG 0.412496 3:-83902073 MsG0380016470.01.T01:CDS
AATTCAAAGTCCTGGAATAC+AGG 0.414065 3:-83903293 MsG0380016470.01.T01:intron
ATATTGACTGAATTTAACTT+TGG 0.416798 3:+83903966 None:intergenic
ATGGGAAAGTGTTGGTTTGT+TGG 0.421010 3:-83904087 MsG0380016470.01.T01:CDS
TATTGACTGAATTTAACTTT+GGG 0.423688 3:+83903967 None:intergenic
GCTTGTTGGTAACAACAATT+GGG 0.424484 3:-83904038 MsG0380016470.01.T01:CDS
ATTTCTTGTTCAGCTATAGC+TGG 0.425988 3:+83901899 None:intergenic
GTAACAACAATTGGGGTAGA+AGG 0.426136 3:-83904030 MsG0380016470.01.T01:CDS
GGTGTGCTTTGTGAGGGAAT+TGG 0.427376 3:-83904129 MsG0380016470.01.T01:CDS
AACACGATGGAGAAGAAGAT+TGG 0.428068 3:-83907453 MsG0380016470.01.T01:CDS
GTTATTAGAATTATTAGAAT+GGG 0.428484 3:-83904105 MsG0380016470.01.T01:CDS
TATTACCTCCATTGAGCCAT+AGG 0.439967 3:+83903851 None:intergenic
AAAATCACAATCATTCCTAA+TGG 0.440186 3:+83902045 None:intergenic
AACACTACTAAACCCTCAAT+TGG 0.441749 3:-83900628 MsG0380016470.01.T01:CDS
GTAATGGAACAACTGAATCT+TGG 0.442814 3:+83900995 None:intergenic
TACGAAGAAATTCAAAGTCC+TGG 0.444786 3:-83903301 MsG0380016470.01.T01:CDS
AATAGATGTAATGCCCTAGA+AGG 0.456374 3:+83900682 None:intergenic
GTTTGTTGGAGTGTTGTTTG+TGG 0.459216 3:-83904073 MsG0380016470.01.T01:CDS
AAGTAGTTGGTGGGAGAAGG+AGG 0.461598 3:-83907486 MsG0380016470.01.T01:CDS
AAAAGCACCTCCTCCGATAG+AGG 0.462804 3:+83903367 None:intergenic
AGAAAGTAGTTGGTGGGAGA+AGG 0.467703 3:-83907489 MsG0380016470.01.T01:CDS
TGGAGAGCCTTCTGAACCTC+AGG 0.468727 3:+83901704 None:intergenic
GTGGAGTCTCCCGCTGGAGT+TGG 0.470449 3:-83902982 MsG0380016470.01.T01:CDS
ATAGAGTTTGGTTCCACAAA+GGG 0.470528 3:-83900909 MsG0380016470.01.T01:CDS
GCGGGTCACATGGTGCCATA+TGG 0.470975 3:-83900709 MsG0380016470.01.T01:CDS
TACTAATCTGCCATATCCAT+GGG 0.479527 3:-83901672 MsG0380016470.01.T01:CDS
GTTAAATTCAGTCAATATGC+TGG 0.485104 3:-83903961 MsG0380016470.01.T01:CDS
TTCGCCACTGTAAGAGGAGC+GGG 0.485217 3:-83900727 MsG0380016470.01.T01:CDS
CCTCTCACCCTATGGCTCAA+TGG 0.485243 3:-83903859 MsG0380016470.01.T01:CDS
GACTGAATTTAACTTTGGGT+TGG 0.486607 3:+83903971 None:intergenic
ACAACTTCTGATTATAACAT+TGG 0.489905 3:-83902943 MsG0380016470.01.T01:CDS
AGACTCCACAAAGAGGAGAT+TGG 0.491453 3:+83902996 None:intergenic
AGTTATTAGAATTATTAGAA+TGG 0.492280 3:-83904106 MsG0380016470.01.T01:CDS
GATCTAGTTGTGAAGTTGCC+AGG 0.494140 3:-83903994 MsG0380016470.01.T01:CDS
TATCCTTCTGGTGATGGACG+CGG 0.498312 3:-83903326 MsG0380016470.01.T01:CDS
ACACGATGGAGAAGAAGATT+GGG 0.500088 3:-83907452 MsG0380016470.01.T01:intron
ACAATTCATTCTCCAATTGA+GGG 0.500289 3:+83900616 None:intergenic
AATTTAACTTTGGGTTGGCC+TGG 0.501987 3:+83903976 None:intergenic
ATATGCTTCCAATTCTCAAA+CGG 0.502822 3:-83901153 MsG0380016470.01.T01:CDS
TGTTGGAGTGTTGTTTGTGG+TGG 0.503160 3:-83904070 MsG0380016470.01.T01:CDS
GCCATATGGACAACCTTCTA+GGG 0.514262 3:-83900695 MsG0380016470.01.T01:CDS
ATTATAATCAAGAATGGCAT+TGG 0.521613 3:+83902365 None:intergenic
CTATTCAGCTCCTTTGTGCA+TGG 0.523679 3:-83900664 MsG0380016470.01.T01:CDS
TTATTAGAATGGGAAAGTGT+TGG 0.524595 3:-83904095 MsG0380016470.01.T01:CDS
TCTGAACCTCAGGCAGGTTG+AGG 0.529529 3:+83901714 None:intergenic
GGTCCGGGATGTTCCTCTAT+CGG 0.532762 3:-83903380 MsG0380016470.01.T01:CDS
ATGAGCATTATAATCAAGAA+TGG 0.534017 3:+83902359 None:intergenic
AACATTGGTGACGCCTCCAC+AGG 0.534280 3:-83902928 MsG0380016470.01.T01:intron
ATTACCTCCATTGAGCCATA+GGG 0.535044 3:+83903852 None:intergenic
TCACAACTAGATCTTCAATT+GGG 0.535707 3:+83904004 None:intergenic
GTACTAATCTGCCATATCCA+TGG 0.541288 3:-83901673 MsG0380016470.01.T01:CDS
GGTGGCATATGGAAGCTTGT+TGG 0.550255 3:-83904052 MsG0380016470.01.T01:CDS
TGAAGAAGAAAGTAGTTGGT+GGG 0.561144 3:-83907495 MsG0380016470.01.T01:CDS
ATACGTTATGAGTAGTTGCA+TGG 0.562834 3:+83902011 None:intergenic
GCAGATTAGTACGGTTGGCA+TGG 0.563219 3:+83901684 None:intergenic
AGAATGGCATTGGCTAATTG+AGG 0.563874 3:+83902375 None:intergenic
CAACCTGCCTGAGGTTCAGA+AGG 0.564507 3:-83901711 MsG0380016470.01.T01:CDS
GAGCCTTCTGAACCTCAGGC+AGG 0.567516 3:+83901708 None:intergenic
GGTAGAGGGTGTGCTTTGTG+AGG 0.567635 3:-83904136 MsG0380016470.01.T01:CDS
ATGAAGAAGAAAGTAGTTGG+TGG 0.568335 3:-83907496 MsG0380016470.01.T01:CDS
GTAGAGGGTGTGCTTTGTGA+GGG 0.570343 3:-83904135 MsG0380016470.01.T01:CDS
ACAATGAAGAAGAAAGTAGT+TGG 0.571898 3:-83907499 MsG0380016470.01.T01:CDS
AGTTTGGTTCCACAAAGGGC+AGG 0.573792 3:-83900905 MsG0380016470.01.T01:intron
GGATGTTCCTCTATCGGAGG+AGG 0.577355 3:-83903374 MsG0380016470.01.T01:CDS
TATGACCAACCAACTCCAGC+GGG 0.579633 3:+83902973 None:intergenic
ATATGGCAGATTAGTACGGT+TGG 0.580186 3:+83901679 None:intergenic
AGTCTCCCGCTGGAGTTGGT+TGG 0.582374 3:-83902978 MsG0380016470.01.T01:CDS
ATGGATATGGCAGATTAGTA+CGG 0.582412 3:+83901675 None:intergenic
GCATGTGTAGGCTGGAGGTT+GGG 0.585017 3:-83900776 MsG0380016470.01.T01:intron
ATTGGAAGCATATTAGCGTA+AGG 0.588336 3:+83901163 None:intergenic
TAACAACAATTGGGGTAGAA+GGG 0.589048 3:-83904029 MsG0380016470.01.T01:CDS
TACGTTATGAGTAGTTGCAT+GGG 0.589405 3:+83902012 None:intergenic
TGCATGTGTAGGCTGGAGGT+TGG 0.590249 3:-83900777 MsG0380016470.01.T01:intron
AGTGTTCGAGAACCTAGTAA+TGG 0.592866 3:+83900979 None:intergenic
CCATTGAGCCATAGGGTGAG+AGG 0.592895 3:+83903859 None:intergenic
GTTGATATAGATATAAAACA+TGG 0.595163 3:-83903934 MsG0380016470.01.T01:CDS
TGTAAGAGGAGCGGGTCACA+TGG 0.600160 3:-83900719 MsG0380016470.01.T01:CDS
TACTCACTACACATGCCCCA+TGG 0.601045 3:+83901656 None:intergenic
TATAGAGTTTGGTTCCACAA+AGG 0.604917 3:-83900910 MsG0380016470.01.T01:CDS
TAATTACCTCAACCTGCCTG+AGG 0.606984 3:-83901720 MsG0380016470.01.T01:CDS
GTGACCCGCTCCTCTTACAG+TGG 0.608929 3:+83900723 None:intergenic
CCTCCGATAGAGGAACATCC+CGG 0.613367 3:+83903377 None:intergenic
ATCTAACTTTGTACCTGTGG+AGG 0.614408 3:+83902915 None:intergenic
CAATCTCTTTCCATGCACAA+AGG 0.621559 3:+83900654 None:intergenic
GAGTTCTACTAATAGGTAGA+GGG 0.622507 3:-83904150 MsG0380016470.01.T01:intron
TTGATATAGATATAAAACAT+GGG 0.633528 3:-83903933 MsG0380016470.01.T01:CDS
TTTCGCCACTGTAAGAGGAG+CGG 0.634648 3:-83900728 MsG0380016470.01.T01:CDS
CCGGGATGTTCCTCTATCGG+AGG 0.639230 3:-83903377 MsG0380016470.01.T01:CDS
CTCACCCTATGGCTCAATGG+AGG 0.646306 3:-83903856 MsG0380016470.01.T01:intron
TATGAATATTACTGGTCACA+CGG 0.646588 3:-83902094 MsG0380016470.01.T01:CDS
CAGCGGGAGACTCCACAAAG+AGG 0.654135 3:+83902989 None:intergenic
AGACCGCGTCCATCACCAGA+AGG 0.655604 3:+83903323 None:intergenic
AGGAAGAAGAAGAAACACGA+TGG 0.673690 3:-83907466 MsG0380016470.01.T01:CDS
CTTGTTGGTAACAACAATTG+GGG 0.679916 3:-83904037 MsG0380016470.01.T01:CDS
ATATAGATATAAAACATGGG+AGG 0.711528 3:-83903930 MsG0380016470.01.T01:CDS
TTAATGCATGTGTAGGCTGG+AGG 0.712606 3:-83900781 MsG0380016470.01.T01:intron
GTATGACCAACCAACTCCAG+CGG 0.719006 3:+83902972 None:intergenic
ACTAATCTGCCATATCCATG+GGG 0.764052 3:-83901671 MsG0380016470.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATGCAAATAAAAAAA+AGG + Chr3:83903548-83903567 None:intergenic 10.0%
!! AAAATAGTTTAATTGAAAAT+TGG - Chr3:83901081-83901100 MsG0380016470.01.T01:intron 10.0%
!! AAACGATAAATTATTAAATT+TGG + Chr3:83905478-83905497 None:intergenic 10.0%
!! ATAAATAAATTGTTCTTTAT+TGG - Chr3:83904683-83904702 MsG0380016470.01.T01:intron 10.0%
!! ATACAATATTAATATTAATC+TGG - Chr3:83903899-83903918 MsG0380016470.01.T01:CDS 10.0%
!! CTTTGATATATAAATATTAT+TGG - Chr3:83906641-83906660 MsG0380016470.01.T01:intron 10.0%
!! TAACAAGATTAAATAAATTT+AGG + Chr3:83900939-83900958 None:intergenic 10.0%
!! TCTTAAAAAAAATATTAATC+TGG - Chr3:83903928-83903947 MsG0380016470.01.T01:CDS 10.0%
!!! AATATAAGATTATTTTAACA+AGG + Chr3:83901701-83901720 None:intergenic 10.0%
!!! AATTTGTTAGTTTTATTATT+AGG - Chr3:83905301-83905320 MsG0380016470.01.T01:intron 10.0%
!!! GATTAATATTTTTTTTAAGA+AGG + Chr3:83903928-83903947 None:intergenic 10.0%
!!! TATATATGTTTTTTTTTACA+AGG + Chr3:83902347-83902366 None:intergenic 10.0%
!! ACAATATATATTATACGTAA+GGG - Chr3:83903010-83903029 MsG0380016470.01.T01:intron 15.0%
!! AGTTATTAGAATTATTAGAA+TGG - Chr3:83904011-83904030 MsG0380016470.01.T01:CDS 15.0%
!! ATACTAGAAACAAAAATAAA+GGG + Chr3:83902942-83902961 None:intergenic 15.0%
!! ATTTAATATATCATGTGAAT+TGG + Chr3:83905827-83905846 None:intergenic 15.0%
!! GACCAAAATAAAAATATAAA+TGG - Chr3:83903377-83903396 MsG0380016470.01.T01:CDS 15.0%
!! GTATATAACAATTAATTGAT+TGG + Chr3:83901782-83901801 None:intergenic 15.0%
!! GTTATTAGAATTATTAGAAT+GGG - Chr3:83904012-83904031 MsG0380016470.01.T01:CDS 15.0%
!! TATACTAGAAACAAAAATAA+AGG + Chr3:83902943-83902962 None:intergenic 15.0%
!! TCATAATAATTTAACAAGTA+TGG + Chr3:83907093-83907112 None:intergenic 15.0%
!! TTGATATAGATATAAAACAT+GGG - Chr3:83904184-83904203 MsG0380016470.01.T01:intron 15.0%
!! TTGTTAAATTATTATGATAG+TGG - Chr3:83907096-83907115 MsG0380016470.01.T01:intron 15.0%
!! TTTCAATATGCAAAAAAATT+AGG + Chr3:83907265-83907284 None:intergenic 15.0%
!!! AAATTTTTGTATGTTATACA+TGG - Chr3:83905278-83905297 MsG0380016470.01.T01:intron 15.0%
!!! ATATAAGAGTATTAAACATA+TGG - Chr3:83902362-83902381 MsG0380016470.01.T01:CDS 15.0%
!!! CACCATTTATATTTTTATTT+TGG + Chr3:83903382-83903401 None:intergenic 15.0%
!!! TATATTTTTATTTTGGTCAA+GGG + Chr3:83903375-83903394 None:intergenic 15.0%
!!! TTAAATTAATTTTGTCTACA+AGG + Chr3:83906543-83906562 None:intergenic 15.0%
!!! TTATATTTTTATTTTGGTCA+AGG + Chr3:83903376-83903395 None:intergenic 15.0%
!! AAAAATTAAATTTAGTGTCG+TGG - Chr3:83905507-83905526 MsG0380016470.01.T01:intron 20.0%
!! AATAAATTGTTCTTTATTGG+AGG - Chr3:83904686-83904705 MsG0380016470.01.T01:intron 20.0%
!! AATTTGATTATTGTGTTTGT+TGG + Chr3:83905455-83905474 None:intergenic 20.0%
!! AGAGATATAATTGATATGAA+TGG - Chr3:83906684-83906703 MsG0380016470.01.T01:intron 20.0%
!! AGTATGCAAATAAATTATTG+TGG + Chr3:83903574-83903593 None:intergenic 20.0%
!! ATAAATTGTTCTTTATTGGA+GGG - Chr3:83904687-83904706 MsG0380016470.01.T01:intron 20.0%
!! ATAATTTAACAAGTATGGTA+AGG + Chr3:83907088-83907107 None:intergenic 20.0%
!! CAACATACGAAATTAAATAA+AGG + Chr3:83904356-83904375 None:intergenic 20.0%
!! CAATATTAATATTAATCTGG+TGG - Chr3:83903902-83903921 MsG0380016470.01.T01:CDS 20.0%
!! GAAATCCAAAAATAAGTTAA+GGG - Chr3:83900895-83900914 MsG0380016470.01.T01:intron 20.0%
!! GACAATATATATTATACGTA+AGG - Chr3:83903009-83903028 MsG0380016470.01.T01:intron 20.0%
!! GAGAATACATAAAATACATT+AGG + Chr3:83903283-83903302 None:intergenic 20.0%
!! GTAGAACTCTAATTAAATAA+TGG + Chr3:83903956-83903975 None:intergenic 20.0%
!! GTTGATATAGATATAAAACA+TGG - Chr3:83904183-83904202 MsG0380016470.01.T01:intron 20.0%
!! TAAAAAATTAATGCATGTGT+AGG - Chr3:83907329-83907348 MsG0380016470.01.T01:intron 20.0%
!! TCAAAATCATATTCCAATAT+GGG - Chr3:83906992-83907011 MsG0380016470.01.T01:intron 20.0%
!! TGAAATCCAAAAATAAGTTA+AGG - Chr3:83900894-83900913 MsG0380016470.01.T01:intron 20.0%
!! TGAATGGAGTTTATAAATAT+AGG - Chr3:83906700-83906719 MsG0380016470.01.T01:intron 20.0%
!! TTAATTAGAGTTCTACTAAT+AGG - Chr3:83903960-83903979 MsG0380016470.01.T01:CDS 20.0%
!! TTATTGTAATTGTCTTTATG+AGG - Chr3:83902969-83902988 MsG0380016470.01.T01:CDS 20.0%
!! TTCAAAATCATATTCCAATA+TGG - Chr3:83906991-83907010 MsG0380016470.01.T01:intron 20.0%
!! TTGATATTTGAGAATTATGT+GGG - Chr3:83905046-83905065 MsG0380016470.01.T01:intron 20.0%
!! TTGTCAAATAATTTAGTAGT+TGG + Chr3:83903040-83903059 None:intergenic 20.0%
!! TTTAGGCTTAATTAATCATT+TGG + Chr3:83900922-83900941 None:intergenic 20.0%
!! TTTGATATTTGAGAATTATG+TGG - Chr3:83905045-83905064 MsG0380016470.01.T01:intron 20.0%
!!! AATTAGAATAAAGTTTTGCA+TGG - Chr3:83902692-83902711 MsG0380016470.01.T01:intron 20.0%
!!! ACGACACTAAATTTAATTTT+TGG + Chr3:83905508-83905527 None:intergenic 20.0%
!!! AGATATTGACTACATAAATT+TGG + Chr3:83905236-83905255 None:intergenic 20.0%
!!! ATATTGACTGAATTTAACTT+TGG + Chr3:83904154-83904173 None:intergenic 20.0%
!!! ATATTTTAAGTTTAATCGGT+AGG - Chr3:83903064-83903083 MsG0380016470.01.T01:intron 20.0%
!!! ATTAACTTGGTTAATTTTCT+AGG - Chr3:83904716-83904735 MsG0380016470.01.T01:intron 20.0%
!!! ATTGAAAATTGATTTGAGTA+TGG - Chr3:83907278-83907297 MsG0380016470.01.T01:intron 20.0%
!!! CAACATTTTTTAAGTTTAAC+CGG - Chr3:83903105-83903124 MsG0380016470.01.T01:intron 20.0%
!!! GATTTTCTTGATATCAATTT+TGG + Chr3:83902727-83902746 None:intergenic 20.0%
!!! TAGTCTAATAATGTTGATTT+GGG + Chr3:83902785-83902804 None:intergenic 20.0%
!!! TATTGACTGAATTTAACTTT+GGG + Chr3:83904153-83904172 None:intergenic 20.0%
!!! TTAGTCTAATAATGTTGATT+TGG + Chr3:83902786-83902805 None:intergenic 20.0%
!!! TTTAGACATTCTTTTTTTCA+AGG - Chr3:83902486-83902505 MsG0380016470.01.T01:intron 20.0%
! AAAATCACAATCATTCCTAA+TGG + Chr3:83906075-83906094 None:intergenic 25.0%
! AAATATTCAATTTAGCAGAG+AGG - Chr3:83905534-83905553 MsG0380016470.01.T01:intron 25.0%
! AAGCAACATATGAATATTAC+TGG - Chr3:83906015-83906034 MsG0380016470.01.T01:intron 25.0%
! ACAACTTCTGATTATAACAT+TGG - Chr3:83905174-83905193 MsG0380016470.01.T01:intron 25.0%
! ACATGAACAATATATAAGTC+AGG + Chr3:83905082-83905101 None:intergenic 25.0%
! AGAAACACCAAGAAAAAAAA+AGG + Chr3:83902523-83902542 None:intergenic 25.0%
! AGAAATCAGATTGAAAAAGA+TGG - Chr3:83906235-83906254 MsG0380016470.01.T01:intron 25.0%
! AGATGATTTGAATTTGATGT+AGG + Chr3:83904653-83904672 None:intergenic 25.0%
! ATATAGATATAAAACATGGG+AGG - Chr3:83904187-83904206 MsG0380016470.01.T01:intron 25.0%
! ATATTCCAATATGGGTTTAT+AGG - Chr3:83907000-83907019 MsG0380016470.01.T01:intron 25.0%
! ATGAGCATTATAATCAAGAA+TGG + Chr3:83905761-83905780 None:intergenic 25.0%
! ATTATAATCAAGAATGGCAT+TGG + Chr3:83905755-83905774 None:intergenic 25.0%
! CAAATTCAAATCATCTTACA+AGG - Chr3:83904657-83904676 MsG0380016470.01.T01:intron 25.0%
! CATAAAGAGTTAATTGAACA+TGG - Chr3:83902101-83902120 MsG0380016470.01.T01:CDS 25.0%
! CGGTTAAACTTAAAAAATGT+TGG + Chr3:83903107-83903126 None:intergenic 25.0%
! CTTTATGTCTTGAATCAAAA+TGG + Chr3:83902088-83902107 None:intergenic 25.0%
! GTAAAGAAGTGAGAAAATTA+GGG + Chr3:83900701-83900720 None:intergenic 25.0%
! TAAATTGTTCTTTATTGGAG+GGG - Chr3:83904688-83904707 MsG0380016470.01.T01:intron 25.0%
! TCAAAACCACTTGTATTTAT+AGG + Chr3:83901442-83901461 None:intergenic 25.0%
! TGAAATTATGCATTTCAGTT+TGG + Chr3:83902903-83902922 None:intergenic 25.0%
! TTAATTTATTCATGCATCTG+AGG - Chr3:83903602-83903621 MsG0380016470.01.T01:intron 25.0%
! TTATCCTTTGAATGAGATAT+TGG + Chr3:83901152-83901171 None:intergenic 25.0%
! TTCCAATCTAACAAAGTTAA+GGG + Chr3:83905965-83905984 None:intergenic 25.0%
! TTTCCAATCTAACAAAGTTA+AGG + Chr3:83905966-83905985 None:intergenic 25.0%
! TTTGTTTATTTCATTGATGC+AGG - Chr3:83906325-83906344 MsG0380016470.01.T01:intron 25.0%
!! AATCAAACAAGAGTTTTACA+AGG - Chr3:83903185-83903204 MsG0380016470.01.T01:intron 25.0%
!! ATGATATAATTTTGTCAAGC+TGG + Chr3:83904503-83904522 None:intergenic 25.0%
!! CAATTCCATTTTCTTCAAAA+AGG + Chr3:83903728-83903747 None:intergenic 25.0%
!! GAAATCAAGTGTGAATTTTA+TGG - Chr3:83902156-83902175 MsG0380016470.01.T01:intron 25.0%
!! GTGAATTTTATGGTAAAACT+TGG - Chr3:83902166-83902185 MsG0380016470.01.T01:intron 25.0%
!! TAATTGAAAATTGGTGTCTT+GGG - Chr3:83901090-83901109 MsG0380016470.01.T01:intron 25.0%
!! TCTTACATACTAACATTTTC+AGG - Chr3:83905709-83905728 MsG0380016470.01.T01:intron 25.0%
!! TTAATTGAAAATTGGTGTCT+TGG - Chr3:83901089-83901108 MsG0380016470.01.T01:intron 25.0%
!! TTGTTATCATGAAGTTTTAC+CGG - Chr3:83906508-83906527 MsG0380016470.01.T01:intron 25.0%
!! TTTGAGACAGTTTAAAGTTA+GGG - Chr3:83900863-83900882 MsG0380016470.01.T01:intron 25.0%
!! TTTTATGTTGAACTTGAAAC+TGG + Chr3:83905788-83905807 None:intergenic 25.0%
!!! AGTTTCAAGTTCAACATAAA+AGG - Chr3:83905787-83905806 MsG0380016470.01.T01:intron 25.0%
!!! ATAAATACAAGTGGTTTTGA+AGG - Chr3:83901442-83901461 MsG0380016470.01.T01:intron 25.0%
!!! ATTTCGTATGTTGATAGTAT+AGG - Chr3:83904363-83904382 MsG0380016470.01.T01:intron 25.0%
!!! ATTTTTTAAGTTTAACCGGT+AGG - Chr3:83903109-83903128 MsG0380016470.01.T01:intron 25.0%
!!! ATTTTTTCATTCAGCTTCAT+TGG + Chr3:83902419-83902438 None:intergenic 25.0%
!!! CTTATTTTTGGATTTCAGTT+TGG + Chr3:83900891-83900910 None:intergenic 25.0%
!!! CTTTTTGAAGAAAATGGAAT+TGG - Chr3:83903726-83903745 MsG0380016470.01.T01:intron 25.0%
!!! TCTCTTCTATTATTTTGTTG+AGG - Chr3:83904212-83904231 MsG0380016470.01.T01:intron 25.0%
!!! TGTTTCCTTTTTGAAGAAAA+TGG - Chr3:83903720-83903739 MsG0380016470.01.T01:intron 25.0%
!!! TTCTTGATATCAATTTTGGT+AGG + Chr3:83902723-83902742 None:intergenic 25.0%
!!! TTTAAGCAGTTGTTTTATCT+TGG + Chr3:83901596-83901615 None:intergenic 25.0%
AAAAACCAACGACAATCTAA+TGG + Chr3:83903229-83903248 None:intergenic 30.0%
AAAACCTATGTCATCATTTC+TGG - Chr3:83905597-83905616 MsG0380016470.01.T01:intron 30.0%
AAAATAAAATTGTGCGTGCA+AGG + Chr3:83904598-83904617 None:intergenic 30.0%
AACCATCAAATTTACTAGCT+AGG - Chr3:83906770-83906789 MsG0380016470.01.T01:intron 30.0%
AACCCTTGCACAAATTATAT+CGG + Chr3:83903435-83903454 None:intergenic 30.0%
AACTACCTATAAACCCATAT+TGG + Chr3:83907008-83907027 None:intergenic 30.0%
AACTTTAAACTGTCTCAAAG+TGG + Chr3:83900862-83900881 None:intergenic 30.0%
AAGAGTGAAAATAGAGTTGT+TGG + Chr3:83901399-83901418 None:intergenic 30.0%
ACAAAGCAAATTTCAAGATC+AGG - Chr3:83904939-83904958 MsG0380016470.01.T01:intron 30.0%
ACGCTGTTAGATCATAATAT+TGG + Chr3:83903150-83903169 None:intergenic 30.0%
ACTGCTAGAAAGAAAGAAAA+AGG + Chr3:83904556-83904575 None:intergenic 30.0%
AGTGAAATCAATTGAGACTT+TGG - Chr3:83901355-83901374 MsG0380016470.01.T01:intron 30.0%
ATATGCTTCCAATTCTCAAA+CGG - Chr3:83906964-83906983 MsG0380016470.01.T01:intron 30.0%
ATCATGTGAATTGGATCTTA+CGG + Chr3:83905818-83905837 None:intergenic 30.0%
ATGTGTTTAGTTGTAACTTC+TGG - Chr3:83902823-83902842 MsG0380016470.01.T01:intron 30.0%
ATTCACACACATAATATGTG+TGG + Chr3:83903487-83903506 None:intergenic 30.0%
CAATGCATTACAATCATCAA+CGG - Chr3:83902036-83902055 MsG0380016470.01.T01:CDS 30.0%
GAGTATTAAACATATGGAAG+AGG - Chr3:83902368-83902387 MsG0380016470.01.T01:CDS 30.0%
GGTAAAGAAGTGAGAAAATT+AGG + Chr3:83900702-83900721 None:intergenic 30.0%
GTTAAATTCAGTCAATATGC+TGG - Chr3:83904156-83904175 MsG0380016470.01.T01:intron 30.0%
TAAAAAAAAGGAGACGTGTT+TGG + Chr3:83903536-83903555 None:intergenic 30.0%
TAAATCCATTAGATTGTCGT+TGG - Chr3:83903221-83903240 MsG0380016470.01.T01:intron 30.0%
TAGGCAAAAGAACACAATTA+AGG + Chr3:83905664-83905683 None:intergenic 30.0%
TATGAATATTACTGGTCACA+CGG - Chr3:83906023-83906042 MsG0380016470.01.T01:intron 30.0%
TCACAACTAGATCTTCAATT+GGG + Chr3:83904116-83904135 None:intergenic 30.0%
TCATCACCTATAAATACAAG+TGG - Chr3:83901433-83901452 MsG0380016470.01.T01:intron 30.0%
TCTCCTTGTAATCAATTGAT+AGG - Chr3:83900743-83900762 MsG0380016470.01.T01:CDS 30.0%
TGAACATGAAAAATCATGGA+GGG + Chr3:83902063-83902082 None:intergenic 30.0%
TGAGGTTAACTAAGTTAGTA+TGG - Chr3:83902987-83903006 MsG0380016470.01.T01:CDS 30.0%
TTACAGACTCATATAGAGTT+TGG - Chr3:83907196-83907215 MsG0380016470.01.T01:intron 30.0%
TTCACAACTAGATCTTCAAT+TGG + Chr3:83904117-83904136 None:intergenic 30.0%
TTCCCTTAACTTTGTTAGAT+TGG - Chr3:83905960-83905979 MsG0380016470.01.T01:intron 30.0%
TTCCTAGCTAGTAAATTTGA+TGG + Chr3:83906775-83906794 None:intergenic 30.0%
TTTGACAAAAACCAACAGAA+GGG - Chr3:83900803-83900822 MsG0380016470.01.T01:intron 30.0%
! ACTACATGAAAGCAAGATTT+TGG + Chr3:83904887-83904906 None:intergenic 30.0%
! ATATAATTTGTGCAAGGGTT+GGG - Chr3:83903435-83903454 MsG0380016470.01.T01:intron 30.0%
! GATAAACGGAGGTATAATTA+AGG - Chr3:83900834-83900853 MsG0380016470.01.T01:intron 30.0%
! TCTAGATGACGTTCTTTTAT+CGG - Chr3:83902453-83902472 MsG0380016470.01.T01:intron 30.0%
! TGTTATCATGAAGTTTTACC+GGG - Chr3:83906509-83906528 MsG0380016470.01.T01:intron 30.0%
! TTATTAGAATGGGAAAGTGT+TGG - Chr3:83904022-83904041 MsG0380016470.01.T01:CDS 30.0%
! TTGAGACAGTTTAAAGTTAG+GGG - Chr3:83900864-83900883 MsG0380016470.01.T01:intron 30.0%
! TTTTGACAAAAACCAACAGA+AGG - Chr3:83900802-83900821 MsG0380016470.01.T01:intron 30.0%
!! CTTTGAGACAGTTTAAAGTT+AGG - Chr3:83900862-83900881 MsG0380016470.01.T01:intron 30.0%
!! TACATGAGCTGTTATTTCTT+CGG + Chr3:83906892-83906911 None:intergenic 30.0%
!! TTGGTCCCTTAACTTATTTT+TGG + Chr3:83900903-83900922 None:intergenic 30.0%
!! TTTTTCTTTCTTTCTAGCAG+TGG - Chr3:83904555-83904574 MsG0380016470.01.T01:intron 30.0%
!!! CTATATATTTGTGCCACTTT+TGG - Chr3:83905861-83905880 MsG0380016470.01.T01:intron 30.0%
AAATTAATGCATGTGTAGGC+TGG - Chr3:83907333-83907352 MsG0380016470.01.T01:intron 35.0%
AACACTACTAAACCCTCAAT+TGG - Chr3:83907489-83907508 MsG0380016470.01.T01:CDS 35.0%
AAGGCCAATATCTCATTCAA+AGG - Chr3:83901145-83901164 MsG0380016470.01.T01:CDS 35.0%
AATAGATGTAATGCCCTAGA+AGG + Chr3:83907438-83907457 None:intergenic 35.0%
AATCATTCTCCAGAACATTC+TGG - Chr3:83901755-83901774 MsG0380016470.01.T01:CDS 35.0%
AATTCAAAGTCCTGGAATAC+AGG - Chr3:83904824-83904843 MsG0380016470.01.T01:intron 35.0%
ACATAATATGTGTGGAGAAG+TGG + Chr3:83903479-83903498 None:intergenic 35.0%
ACCCTTGCACAAATTATATC+GGG + Chr3:83903434-83903453 None:intergenic 35.0%
ACTTCAGATGATAGTTGTCT+TGG - Chr3:83901826-83901845 MsG0380016470.01.T01:intron 35.0%
AGAGTTCTACTAATAGGTAG+AGG - Chr3:83903966-83903985 MsG0380016470.01.T01:CDS 35.0%
AGCTTCATTGGAGTTTAGAT+AGG + Chr3:83902407-83902426 None:intergenic 35.0%
AGGAAAAACTTGTGACAACA+AGG + Chr3:83904336-83904355 None:intergenic 35.0%
AGTTTCCTTCATACAAATCG+AGG - Chr3:83905396-83905415 MsG0380016470.01.T01:intron 35.0%
ATAATATGTGTGGAGAAGTG+GGG + Chr3:83903477-83903496 None:intergenic 35.0%
ATACGTTATGAGTAGTTGCA+TGG + Chr3:83906109-83906128 None:intergenic 35.0%
ATATATTTACCTGCCCTTTG+TGG + Chr3:83907224-83907243 None:intergenic 35.0%
ATCAATAACACCCATGTCTT+TGG + Chr3:83901992-83902011 None:intergenic 35.0%
ATGAAGAAGAAAGTAGTTGG+TGG - Chr3:83900621-83900640 MsG0380016470.01.T01:CDS 35.0%
ATGGATATGGCAGATTAGTA+CGG + Chr3:83906445-83906464 None:intergenic 35.0%
ATTGAGGGTTTAGTAGTGTT+TGG + Chr3:83907489-83907508 None:intergenic 35.0%
ATTTCTTGTTCAGCTATAGC+TGG + Chr3:83906221-83906240 None:intergenic 35.0%
CAAATCTAACTTTGTACCTG+TGG + Chr3:83905208-83905227 None:intergenic 35.0%
CAAATTAGTCGAGCTGAATA+TGG + Chr3:83902629-83902648 None:intergenic 35.0%
CACCAAGAAAAAAAAAGGCT+CGG + Chr3:83902518-83902537 None:intergenic 35.0%
CATAATATGTGTGGAGAAGT+GGG + Chr3:83903478-83903497 None:intergenic 35.0%
CATATACATACCTGTATTCC+AGG + Chr3:83904837-83904856 None:intergenic 35.0%
CATGCAAGAACTAGATATAG+CGG - Chr3:83901853-83901872 MsG0380016470.01.T01:intron 35.0%
GAAAACACTTGACCATATAC+TGG + Chr3:83903514-83903533 None:intergenic 35.0%
GAACATGAAAAATCATGGAG+GGG + Chr3:83902062-83902081 None:intergenic 35.0%
GACAATAAAACCACCTGATT+TGG + Chr3:83904460-83904479 None:intergenic 35.0%
GAGTTCTACTAATAGGTAGA+GGG - Chr3:83903967-83903986 MsG0380016470.01.T01:CDS 35.0%
GATTCAGTTGTTCCATTACT+AGG - Chr3:83907126-83907145 MsG0380016470.01.T01:intron 35.0%
GGAAAAACTTGTGACAACAA+GGG + Chr3:83904335-83904354 None:intergenic 35.0%
GGAATGATTTCGGATGAAAT+TGG - Chr3:83906044-83906063 MsG0380016470.01.T01:intron 35.0%
GGCAGAACATAATAATCCAA+AGG + Chr3:83906270-83906289 None:intergenic 35.0%
GGTGTGAACATGAAAAATCA+TGG + Chr3:83902067-83902086 None:intergenic 35.0%
GTGAACATGAAAAATCATGG+AGG + Chr3:83902064-83902083 None:intergenic 35.0%
TAACAACAATTGGGGTAGAA+GGG - Chr3:83904088-83904107 MsG0380016470.01.T01:CDS 35.0%
TACGAAGAAATTCAAAGTCC+TGG - Chr3:83904816-83904835 MsG0380016470.01.T01:intron 35.0%
TACGTTATGAGTAGTTGCAT+GGG + Chr3:83906108-83906127 None:intergenic 35.0%
TACTAATCTGCCATATCCAT+GGG - Chr3:83906445-83906464 MsG0380016470.01.T01:intron 35.0%
TAGATGAAGCCAGAAAAACT+TGG + Chr3:83901910-83901929 None:intergenic 35.0%
TAGCGGAGTCTTAAGAAATA+GGG - Chr3:83901870-83901889 MsG0380016470.01.T01:intron 35.0%
TATACCTCCGTTTATCAAAG+TGG + Chr3:83900830-83900849 None:intergenic 35.0%
TGAACTATCCGTTTGAGAAT+TGG + Chr3:83906975-83906994 None:intergenic 35.0%
TGAAGAAGAAAGTAGTTGGT+GGG - Chr3:83900622-83900641 MsG0380016470.01.T01:CDS 35.0%
TGGAGGGGAATTAATTAACT+TGG - Chr3:83904703-83904722 MsG0380016470.01.T01:intron 35.0%
! AACCCGATATAATTTGTGCA+AGG - Chr3:83903429-83903448 MsG0380016470.01.T01:intron 35.0%
! AACTTCCTCGATTTGTATGA+AGG + Chr3:83905404-83905423 None:intergenic 35.0%
! AAGATGGTAACTTTTGCCTT+TGG - Chr3:83906251-83906270 MsG0380016470.01.T01:intron 35.0%
! AATTTTCCTAGCGGCATTTT+TGG + Chr3:83906150-83906169 None:intergenic 35.0%
! ACCCGATATAATTTGTGCAA+GGG - Chr3:83903430-83903449 MsG0380016470.01.T01:intron 35.0%
! ATAGAGTTTGGTTCCACAAA+GGG - Chr3:83907208-83907227 MsG0380016470.01.T01:intron 35.0%
! ATAGCGGAGTCTTAAGAAAT+AGG - Chr3:83901869-83901888 MsG0380016470.01.T01:intron 35.0%
! ATTGGAAGCATATTAGCGTA+AGG + Chr3:83906957-83906976 None:intergenic 35.0%
! ATTTTCACTCTTGATCACCA+AGG - Chr3:83901407-83901426 MsG0380016470.01.T01:intron 35.0%
! CTAGATGACGTTCTTTTATC+GGG - Chr3:83902454-83902473 MsG0380016470.01.T01:intron 35.0%
! CTTGGTTAATTTTCTAGGTC+CGG - Chr3:83904721-83904740 MsG0380016470.01.T01:intron 35.0%
! GAAAATGGAATTGGCTCAAA+TGG - Chr3:83903735-83903754 MsG0380016470.01.T01:intron 35.0%
! GACTGAATTTAACTTTGGGT+TGG + Chr3:83904149-83904168 None:intergenic 35.0%
! GATATAATTTGTGCAAGGGT+TGG - Chr3:83903434-83903453 MsG0380016470.01.T01:intron 35.0%
! GGTGTTTCTTTTCTGTCTTT+AGG - Chr3:83902534-83902553 MsG0380016470.01.T01:intron 35.0%
! GTAATGGAACAACTGAATCT+TGG + Chr3:83907125-83907144 None:intergenic 35.0%
! TAGTTGTAACTTCTGGTTAG+AGG - Chr3:83902830-83902849 MsG0380016470.01.T01:intron 35.0%
! TATAGAGTTTGGTTCCACAA+AGG - Chr3:83907207-83907226 MsG0380016470.01.T01:intron 35.0%
! TTCTACATGCCAAGTTTTTC+TGG - Chr3:83901898-83901917 MsG0380016470.01.T01:CDS 35.0%
! TTGGTTAATTTTCTAGGTCC+GGG - Chr3:83904722-83904741 MsG0380016470.01.T01:intron 35.0%
!! AACCATTCTCTAGAACATTC+TGG - Chr3:83901674-83901693 MsG0380016470.01.T01:CDS 35.0%
!! AGCTTGTTGGTAACAACAAT+TGG - Chr3:83904078-83904097 MsG0380016470.01.T01:CDS 35.0%
!! ATGAAATTGGTCTTGCCATT+AGG - Chr3:83906057-83906076 MsG0380016470.01.T01:intron 35.0%
!! CTTGTTGGTAACAACAATTG+GGG - Chr3:83904080-83904099 MsG0380016470.01.T01:CDS 35.0%
!! GCTTGTTGGTAACAACAATT+GGG - Chr3:83904079-83904098 MsG0380016470.01.T01:CDS 35.0%
!! TAAAACCACCTGATTTGGTT+AGG + Chr3:83904455-83904474 None:intergenic 35.0%
!!! AGGAAGAGTGTGTTTTTAGT+AGG - Chr3:83902554-83902573 MsG0380016470.01.T01:intron 35.0%
!!! TTCCGAGCCTTTTTTTTTCT+TGG - Chr3:83902513-83902532 MsG0380016470.01.T01:intron 35.0%
AACACGATGGAGAAGAAGAT+TGG - Chr3:83900664-83900683 MsG0380016470.01.T01:CDS 40.0%
AACGTTAACTTTGTCCATGC+TGG + Chr3:83900782-83900801 None:intergenic 40.0%
ACACGATGGAGAAGAAGATT+GGG - Chr3:83900665-83900684 MsG0380016470.01.T01:CDS 40.0%
ACACTTGACCATATACTGGT+TGG + Chr3:83903510-83903529 None:intergenic 40.0%
ACTAATCTGCCATATCCATG+GGG - Chr3:83906446-83906465 MsG0380016470.01.T01:intron 40.0%
AGATCTTCTTCAGAGTGATG+CGG - Chr3:83902234-83902253 MsG0380016470.01.T01:intron 40.0%
AGGAAGAAGAAGAAACACGA+TGG - Chr3:83900651-83900670 MsG0380016470.01.T01:CDS 40.0%
AGTCGATCACAAGTGATCAT+AGG + Chr3:83905683-83905702 None:intergenic 40.0%
AGTGTTCGAGAACCTAGTAA+TGG + Chr3:83907141-83907160 None:intergenic 40.0%
AGTTTCCAATCTCCTCTTTG+TGG - Chr3:83905116-83905135 MsG0380016470.01.T01:intron 40.0%
ATACACGATCAGTCCAAAAG+TGG + Chr3:83905877-83905896 None:intergenic 40.0%
ATATGGCAGATTAGTACGGT+TGG + Chr3:83906441-83906460 None:intergenic 40.0%
ATCTAACTTTGTACCTGTGG+AGG + Chr3:83905205-83905224 None:intergenic 40.0%
ATTACCTCCATTGAGCCATA+GGG + Chr3:83904268-83904287 None:intergenic 40.0%
CAATCCCACCATCAATTTGT+GGG - Chr3:83902656-83902675 MsG0380016470.01.T01:intron 40.0%
CAATCTCTTTCCATGCACAA+AGG + Chr3:83907466-83907485 None:intergenic 40.0%
CACGTATTTAGTCACTACGT+CGG + Chr3:83905024-83905043 None:intergenic 40.0%
CAGAGTCTGTTCTCATTTGA+TGG - Chr3:83903319-83903338 MsG0380016470.01.T01:CDS 40.0%
CAGTCTTTCCCACAAATTGA+TGG + Chr3:83902667-83902686 None:intergenic 40.0%
CCATCACCAGAAGGATAAAA+TGG + Chr3:83904788-83904807 None:intergenic 40.0%
GAAGGGACCACTTTGATAAA+CGG - Chr3:83900820-83900839 MsG0380016470.01.T01:intron 40.0%
GGGCCTATCAATTGATTACA+AGG + Chr3:83900749-83900768 None:intergenic 40.0%
GTAACAACAATTGGGGTAGA+AGG - Chr3:83904087-83904106 MsG0380016470.01.T01:CDS 40.0%
GTACTAATCTGCCATATCCA+TGG - Chr3:83906444-83906463 MsG0380016470.01.T01:intron 40.0%
GTGTGAATCCAACCAGTATA+TGG - Chr3:83903499-83903518 MsG0380016470.01.T01:intron 40.0%
TACCAACTGAGCTACACTTA+CGG + Chr3:83903407-83903426 None:intergenic 40.0%
TATCTTGGACCAGAATGTTC+TGG + Chr3:83901581-83901600 None:intergenic 40.0%
TATTACCTCCATTGAGCCAT+AGG + Chr3:83904269-83904288 None:intergenic 40.0%
TCAATCCCACCATCAATTTG+TGG - Chr3:83902655-83902674 MsG0380016470.01.T01:intron 40.0%
TCAGCCAGAAATGATGACAT+AGG + Chr3:83905604-83905623 None:intergenic 40.0%
TCGAGCTGAATATGGAGTTT+AGG + Chr3:83902621-83902640 None:intergenic 40.0%
TCTTTCCCACAAATTGATGG+TGG + Chr3:83902664-83902683 None:intergenic 40.0%
TTCACACTTGATTTCCCTCT+CGG + Chr3:83902151-83902170 None:intergenic 40.0%
TTCAGCTCGACTAATTTGAG+AGG - Chr3:83902631-83902650 MsG0380016470.01.T01:intron 40.0%
TTGATTGGACCAGAATGTTC+TGG + Chr3:83901767-83901786 None:intergenic 40.0%
TTGTATAGAGCTCGACATAG+AGG + Chr3:83901948-83901967 None:intergenic 40.0%
TTTATAGGTGATGAGTGCCT+TGG + Chr3:83901427-83901446 None:intergenic 40.0%
! ATTCAAAGGATAAGAGCACG+TGG - Chr3:83901159-83901178 MsG0380016470.01.T01:CDS 40.0%
! CACGATCCATTTTCAGAAGT+GGG + Chr3:83905989-83906008 None:intergenic 40.0%
! CAGGAACAAAAGCATGTCAT+TGG + Chr3:83905360-83905379 None:intergenic 40.0%
! CCATTTTATCCTTCTGGTGA+TGG - Chr3:83904785-83904804 MsG0380016470.01.T01:intron 40.0%
! CTTTCCCACAAATTGATGGT+GGG + Chr3:83902663-83902682 None:intergenic 40.0%
! TCACGATCCATTTTCAGAAG+TGG + Chr3:83905990-83906009 None:intergenic 40.0%
! TGCTTTTGTTCCTGCTGAAA+TGG - Chr3:83905366-83905385 MsG0380016470.01.T01:intron 40.0%
! TGGAAACCCACTTCTGAAAA+TGG - Chr3:83905980-83905999 MsG0380016470.01.T01:intron 40.0%
! TTGATTTTCGCCACTGTAAG+AGG - Chr3:83907384-83907403 MsG0380016470.01.T01:intron 40.0%
! TTGGGTCCATTTTATCCTTC+TGG - Chr3:83904779-83904798 MsG0380016470.01.T01:intron 40.0%
!! AATTTAACTTTGGGTTGGCC+TGG + Chr3:83904144-83904163 None:intergenic 40.0%
!! AGAATGGCATTGGCTAATTG+AGG + Chr3:83905745-83905764 None:intergenic 40.0%
!! AGGGAGCATATGCATTTTGA+TGG + Chr3:83903356-83903375 None:intergenic 40.0%
!! ATGGGAAAGTGTTGGTTTGT+TGG - Chr3:83904030-83904049 MsG0380016470.01.T01:CDS 40.0%
!! GACATGGGTGTTATTGATCT+TGG - Chr3:83901994-83902013 MsG0380016470.01.T01:CDS 40.0%
!! GACCAGAATGTTCTAGAGAA+TGG + Chr3:83901679-83901698 None:intergenic 40.0%
!! GTTTGTTGGAGTGTTGTTTG+TGG - Chr3:83904044-83904063 MsG0380016470.01.T01:CDS 40.0%
!! TCGAGGAAGTTGTTTCTTAC+CGG - Chr3:83905413-83905432 MsG0380016470.01.T01:intron 40.0%
!!! AGGAGGTGCTTTTACTGAAT+TGG - Chr3:83904760-83904779 MsG0380016470.01.T01:intron 40.0%
!!! GGAGGTGCTTTTACTGAATT+GGG - Chr3:83904761-83904780 MsG0380016470.01.T01:intron 40.0%
AAAGAAAGGTTCGACCCACT+TGG - Chr3:83901116-83901135 MsG0380016470.01.T01:intron 45.0%
AACCACGTCAGCAGTACAAA+AGG + Chr3:83900724-83900743 None:intergenic 45.0%
AAGGAGCTCAACGTTAGAGA+AGG + Chr3:83902194-83902213 None:intergenic 45.0%
AAGTGGGTCGAACCTTTCTT+TGG + Chr3:83901117-83901136 None:intergenic 45.0%
AATCAATTGATAGGCCCACG+TGG - Chr3:83900752-83900771 MsG0380016470.01.T01:CDS 45.0%
ACAAAAAGCCTCTCACCCTA+TGG - Chr3:83904250-83904269 MsG0380016470.01.T01:intron 45.0%
ACCAACTGAGCTACACTTAC+GGG + Chr3:83903406-83903425 None:intergenic 45.0%
ACCACGTCAGCAGTACAAAA+GGG + Chr3:83900723-83900742 None:intergenic 45.0%
ACTTCTCGTACCATTTCAGC+AGG + Chr3:83905379-83905398 None:intergenic 45.0%
AGACTCCACAAAGAGGAGAT+TGG + Chr3:83905124-83905143 None:intergenic 45.0%
AGTGGGTCGAACCTTTCTTT+GGG + Chr3:83901116-83901135 None:intergenic 45.0%
AGTTAGTCACACTATCCGAG+AGG - Chr3:83902133-83902152 MsG0380016470.01.T01:CDS 45.0%
ATACTGCCTCCAGAACATTC+TGG - Chr3:83901569-83901588 MsG0380016470.01.T01:intron 45.0%
ATCAAAGTGGTCCCTTCTGT+TGG + Chr3:83900817-83900836 None:intergenic 45.0%
ATGGAGAAGAAGATTGGGTG+AGG - Chr3:83900670-83900689 MsG0380016470.01.T01:CDS 45.0%
CTACTCCTAACCAAATCAGG+TGG - Chr3:83904447-83904466 MsG0380016470.01.T01:intron 45.0%
CTATTCAGCTCCTTTGTGCA+TGG - Chr3:83907453-83907472 MsG0380016470.01.T01:CDS 45.0%
CTCTTGCTAGCCAAAGACAT+GGG - Chr3:83901979-83901998 MsG0380016470.01.T01:CDS 45.0%
CTGGTCACACGGAATGATTT+CGG - Chr3:83906034-83906053 MsG0380016470.01.T01:intron 45.0%
GATCTAGTTGTGAAGTTGCC+AGG - Chr3:83904123-83904142 MsG0380016470.01.T01:CDS 45.0%
GATCTTCTTCAGAGTGATGC+GGG - Chr3:83902235-83902254 MsG0380016470.01.T01:intron 45.0%
GCCATATGGACAACCTTCTA+GGG - Chr3:83907422-83907441 MsG0380016470.01.T01:intron 45.0%
GTCCTACTCCTAACCAAATC+AGG - Chr3:83904444-83904463 MsG0380016470.01.T01:intron 45.0%
GTTAGTCACACTATCCGAGA+GGG - Chr3:83902134-83902153 MsG0380016470.01.T01:CDS 45.0%
TAATTACCTCAACCTGCCTG+AGG - Chr3:83906397-83906416 MsG0380016470.01.T01:intron 45.0%
TCTCGCAAGTAACACAAGCA+AGG - Chr3:83901278-83901297 MsG0380016470.01.T01:intron 45.0%
TGCCATATGGACAACCTTCT+AGG - Chr3:83907421-83907440 MsG0380016470.01.T01:intron 45.0%
TTAATGCATGTGTAGGCTGG+AGG - Chr3:83907336-83907355 MsG0380016470.01.T01:intron 45.0%
! ACTCTGAAGAAGATCTGCTG+GGG + Chr3:83902230-83902249 None:intergenic 45.0%
! CACTCTGAAGAAGATCTGCT+GGG + Chr3:83902231-83902250 None:intergenic 45.0%
! CTCGCTCACAATTTTCCTAG+CGG + Chr3:83906159-83906178 None:intergenic 45.0%
! GAGTTGTTGCTTGTTGAGCT+AGG + Chr3:83901240-83901259 None:intergenic 45.0%
! TCACTCTGAAGAAGATCTGC+TGG + Chr3:83902232-83902251 None:intergenic 45.0%
!! AGAAAGTAGTTGGTGGGAGA+AGG - Chr3:83900628-83900647 MsG0380016470.01.T01:CDS 45.0%
!! CACCTGATTTGGTTAGGAGT+AGG + Chr3:83904449-83904468 None:intergenic 45.0%
!! GTGTTGTTTGTGGTGGCATA+TGG - Chr3:83904054-83904073 MsG0380016470.01.T01:CDS 45.0%
!! TGTTGGAGTGTTGTTTGTGG+TGG - Chr3:83904047-83904066 MsG0380016470.01.T01:CDS 45.0%
!! TTGGCCTTTTTGCTCCAAGT+GGG + Chr3:83901133-83901152 None:intergenic 45.0%
!!! ATTGGCCTTTTTGCTCCAAG+TGG + Chr3:83901134-83901153 None:intergenic 45.0%
!! AATTATAAAAAAAATATCAT+TGG + Chr3:83906291-83906310 None:intergenic 5.0%
!!! AAATATATTTTAAGTTTAAT+CGG - Chr3:83903060-83903079 MsG0380016470.01.T01:intron 5.0%
!!! ATAAAGTAATATATTTTATT+TGG + Chr3:83903881-83903900 None:intergenic 5.0%
!!! ATAATTTTTTAATTTGTTTT+TGG - Chr3:83905331-83905350 MsG0380016470.01.T01:intron 5.0%
!!! TAATAATAATAATTTTATGA+TGG - Chr3:83904284-83904303 MsG0380016470.01.T01:intron 5.0%
!!! TTATTTATTTTATACATTTT+TGG - Chr3:83907056-83907075 MsG0380016470.01.T01:intron 5.0%
!!! TTTCTTTTTAAAAATTAAAT+TGG + Chr3:83903789-83903808 None:intergenic 5.0%
ACGAAGCCAAAAATGCCGCT+AGG - Chr3:83906141-83906160 MsG0380016470.01.T01:intron 50.0%
CCATGTCTTTGGCTAGCAAG+AGG + Chr3:83901981-83902000 None:intergenic 50.0%
CCTCTTGCTAGCCAAAGACA+TGG - Chr3:83901978-83901997 MsG0380016470.01.T01:CDS 50.0%
CTACACATGCCCCATGGATA+TGG + Chr3:83906458-83906477 None:intergenic 50.0%
CTTACCGGAGAAAGCTATGC+AGG - Chr3:83905428-83905447 MsG0380016470.01.T01:intron 50.0%
CTTGGACCAGAATGTTCTGG+AGG + Chr3:83901578-83901597 None:intergenic 50.0%
GCAGATTAGTACGGTTGGCA+TGG + Chr3:83906436-83906455 None:intergenic 50.0%
GCCCTAGAAGGTTGTCCATA+TGG + Chr3:83907426-83907445 None:intergenic 50.0%
GGAGGTTGGGTAACTGAGTA+TGG - Chr3:83907354-83907373 MsG0380016470.01.T01:intron 50.0%
GGGACCACTTTGATAAACGG+AGG - Chr3:83900823-83900842 MsG0380016470.01.T01:intron 50.0%
GGTGGCATATGGAAGCTTGT+TGG - Chr3:83904065-83904084 MsG0380016470.01.T01:CDS 50.0%
GGTGTGCTTTGTGAGGGAAT+TGG - Chr3:83903988-83904007 MsG0380016470.01.T01:CDS 50.0%
GTATGACCAACCAACTCCAG+CGG + Chr3:83905148-83905167 None:intergenic 50.0%
TACTCACTACACATGCCCCA+TGG + Chr3:83906464-83906483 None:intergenic 50.0%
TATGACCAACCAACTCCAGC+GGG + Chr3:83905147-83905166 None:intergenic 50.0%
TCCCGTAAGTGTAGCTCAGT+TGG - Chr3:83903402-83903421 MsG0380016470.01.T01:intron 50.0%
TCGACCCACTTGGAGCAAAA+AGG - Chr3:83901126-83901145 MsG0380016470.01.T01:CDS 50.0%
TGGACCTGCATAGCTTTCTC+CGG + Chr3:83905435-83905454 None:intergenic 50.0%
TTTCGCCACTGTAAGAGGAG+CGG - Chr3:83907389-83907408 MsG0380016470.01.T01:intron 50.0%
! ACCCTTTTGTACTGCTGACG+TGG - Chr3:83900719-83900738 MsG0380016470.01.T01:CDS 50.0%
! AGGGTGAGAGGCTTTTTGTG+AGG + Chr3:83904249-83904268 None:intergenic 50.0%
! AGTTTGGTTCCACAAAGGGC+AGG - Chr3:83907212-83907231 MsG0380016470.01.T01:intron 50.0%
! CTCTGAAGAAGATCTGCTGG+GGG + Chr3:83902229-83902248 None:intergenic 50.0%
! GAACGTCATCTAGAGCGTGT+CGG + Chr3:83902447-83902466 None:intergenic 50.0%
! GGGTGAGAGGCTTTTTGTGA+GGG + Chr3:83904248-83904267 None:intergenic 50.0%
! GTAGAGGGTGTGCTTTGTGA+GGG - Chr3:83903982-83904001 MsG0380016470.01.T01:CDS 50.0%
! TGAGAGGCTTTTTGTGAGGG+AGG + Chr3:83904245-83904264 None:intergenic 50.0%
!! AAAAGCACCTCCTCCGATAG+AGG + Chr3:83904753-83904772 None:intergenic 50.0%
!! AAGTAGTTGGTGGGAGAAGG+AGG - Chr3:83900631-83900650 MsG0380016470.01.T01:CDS 50.0%
!! GGATAAGAGCACGTGGCTTT+TGG - Chr3:83901166-83901185 MsG0380016470.01.T01:CDS 50.0%
!! GTCTACAAGGTGCTGATACC+CGG + Chr3:83906530-83906549 None:intergenic 50.0%
!! TATCCTTCTGGTGATGGACG+CGG - Chr3:83904791-83904810 MsG0380016470.01.T01:intron 50.0%
CAACCTGCCTGAGGTTCAGA+AGG - Chr3:83906406-83906425 MsG0380016470.01.T01:intron 55.0%
CAGCATCGCTAGACTCCTAC+CGG + Chr3:83903127-83903146 None:intergenic 55.0%
CCATTGAGCCATAGGGTGAG+AGG + Chr3:83904261-83904280 None:intergenic 55.0%
CCTCCGATAGAGGAACATCC+CGG + Chr3:83904743-83904762 None:intergenic 55.0%
CCTCTCACCCTATGGCTCAA+TGG - Chr3:83904258-83904277 MsG0380016470.01.T01:intron 55.0%
CTCACCCTATGGCTCAATGG+AGG - Chr3:83904261-83904280 MsG0380016470.01.T01:intron 55.0%
CTGGGGGAGAATCGTGACAA+AGG + Chr3:83902213-83902232 None:intergenic 55.0%
CTTCTTCAGAGTGATGCGGG+AGG - Chr3:83902238-83902257 MsG0380016470.01.T01:intron 55.0%
GCATGTGTAGGCTGGAGGTT+GGG - Chr3:83907341-83907360 MsG0380016470.01.T01:intron 55.0%
GGATGTTCCTCTATCGGAGG+AGG - Chr3:83904743-83904762 MsG0380016470.01.T01:intron 55.0%
GGTCCGGGATGTTCCTCTAT+CGG - Chr3:83904737-83904756 MsG0380016470.01.T01:intron 55.0%
GGTGTCTTGGGCCCAAAGAA+AGG - Chr3:83901102-83901121 MsG0380016470.01.T01:intron 55.0%
GTGTGGAGAAGTGGGGAATC+CGG + Chr3:83903470-83903489 None:intergenic 55.0%
TCCATGCTGGCATTCCACGT+GGG + Chr3:83900769-83900788 None:intergenic 55.0%
TCTGAACCTCAGGCAGGTTG+AGG + Chr3:83906406-83906425 None:intergenic 55.0%
TGCATGTGTAGGCTGGAGGT+TGG - Chr3:83907340-83907359 MsG0380016470.01.T01:intron 55.0%
TGGAGAGCCTTCTGAACCTC+AGG + Chr3:83906416-83906435 None:intergenic 55.0%
TGTAAGAGGAGCGGGTCACA+TGG - Chr3:83907398-83907417 MsG0380016470.01.T01:intron 55.0%
TGTGGAGAAGTGGGGAATCC+GGG + Chr3:83903469-83903488 None:intergenic 55.0%
TTCGCCACTGTAAGAGGAGC+GGG - Chr3:83907390-83907409 MsG0380016470.01.T01:intron 55.0%
! GAGGCTTTTTGTGAGGGAGG+TGG + Chr3:83904242-83904261 None:intergenic 55.0%
! GGTAGAGGGTGTGCTTTGTG+AGG - Chr3:83903981-83904000 MsG0380016470.01.T01:CDS 55.0%
!! AACATTGGTGACGCCTCCAC+AGG - Chr3:83905189-83905208 MsG0380016470.01.T01:intron 55.0%
AAGGGTTGGGACTCGAACCC+CGG - Chr3:83903448-83903467 MsG0380016470.01.T01:intron 60.0%
AGACCGCGTCCATCACCAGA+AGG + Chr3:83904797-83904816 None:intergenic 60.0%
CAGCGGGAGACTCCACAAAG+AGG + Chr3:83905131-83905150 None:intergenic 60.0%
CCGGGATGTTCCTCTATCGG+AGG - Chr3:83904740-83904759 MsG0380016470.01.T01:intron 60.0%
CTCTTTGTGGAGTCTCCCGC+TGG - Chr3:83905129-83905148 MsG0380016470.01.T01:intron 60.0%
GAGCCTTCTGAACCTCAGGC+AGG + Chr3:83906412-83906431 None:intergenic 60.0%
GTCCATGCTGGCATTCCACG+TGG + Chr3:83900770-83900789 None:intergenic 60.0%
GTGACCCGCTCCTCTTACAG+TGG + Chr3:83907397-83907416 None:intergenic 60.0%
GTGGAGAAGTGGGGAATCCG+GGG + Chr3:83903468-83903487 None:intergenic 60.0%
! AGTCTCCCGCTGGAGTTGGT+TGG - Chr3:83905139-83905158 MsG0380016470.01.T01:intron 60.0%
!! GCGGGTCACATGGTGCCATA+TGG - Chr3:83907408-83907427 MsG0380016470.01.T01:intron 60.0%
GCCCACGTGGAATGCCAGCA+TGG - Chr3:83900765-83900784 MsG0380016470.01.T01:CDS 65.0%
GTGGAGTCTCCCGCTGGAGT+TGG - Chr3:83905135-83905154 MsG0380016470.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 83900621 83907518 83900621 ID=MsG0380016470.01;Name=MsG0380016470.01
Chr3 mRNA 83900621 83907518 83900621 ID=MsG0380016470.01.T01;Parent=MsG0380016470.01;Name=MsG0380016470.01.T01;_AED=0.42;_eAED=0.43;_QI=0|0|0|0.9|0.88|0.8|10|0|481
Chr3 exon 83907453 83907518 83907453 ID=MsG0380016470.01.T01:exon:14163;Parent=MsG0380016470.01.T01
Chr3 exon 83903857 83904157 83903857 ID=MsG0380016470.01.T01:exon:14162;Parent=MsG0380016470.01.T01
Chr3 exon 83903294 83903401 83903294 ID=MsG0380016470.01.T01:exon:14161;Parent=MsG0380016470.01.T01
Chr3 exon 83902929 83903021 83902929 ID=MsG0380016470.01.T01:exon:14160;Parent=MsG0380016470.01.T01
Chr3 exon 83902323 83902408 83902323 ID=MsG0380016470.01.T01:exon:14159;Parent=MsG0380016470.01.T01
Chr3 exon 83901883 83902161 83901883 ID=MsG0380016470.01.T01:exon:14158;Parent=MsG0380016470.01.T01
Chr3 exon 83901659 83901792 83901659 ID=MsG0380016470.01.T01:exon:14157;Parent=MsG0380016470.01.T01
Chr3 exon 83901118 83901210 83901118 ID=MsG0380016470.01.T01:exon:14156;Parent=MsG0380016470.01.T01
Chr3 exon 83900906 83901023 83900906 ID=MsG0380016470.01.T01:exon:14155;Parent=MsG0380016470.01.T01
Chr3 exon 83900621 83900788 83900621 ID=MsG0380016470.01.T01:exon:14154;Parent=MsG0380016470.01.T01
Chr3 CDS 83907453 83907518 83907453 ID=MsG0380016470.01.T01:cds;Parent=MsG0380016470.01.T01
Chr3 CDS 83903857 83904157 83903857 ID=MsG0380016470.01.T01:cds;Parent=MsG0380016470.01.T01
Chr3 CDS 83903294 83903401 83903294 ID=MsG0380016470.01.T01:cds;Parent=MsG0380016470.01.T01
Chr3 CDS 83902929 83903021 83902929 ID=MsG0380016470.01.T01:cds;Parent=MsG0380016470.01.T01
Chr3 CDS 83902323 83902408 83902323 ID=MsG0380016470.01.T01:cds;Parent=MsG0380016470.01.T01
Chr3 CDS 83901883 83902161 83901883 ID=MsG0380016470.01.T01:cds;Parent=MsG0380016470.01.T01
Chr3 CDS 83901659 83901792 83901659 ID=MsG0380016470.01.T01:cds;Parent=MsG0380016470.01.T01
Chr3 CDS 83901118 83901210 83901118 ID=MsG0380016470.01.T01:cds;Parent=MsG0380016470.01.T01
Chr3 CDS 83900906 83901023 83900906 ID=MsG0380016470.01.T01:cds;Parent=MsG0380016470.01.T01
Chr3 CDS 83900621 83900788 83900621 ID=MsG0380016470.01.T01:cds;Parent=MsG0380016470.01.T01
Gene Sequence

>MsG0380016470.01.T01

ATGAAGAAGAAAGTAGTTGGTGGGAGAAGGAGGAAGAAGAAGAAACACGATGGAGAAGAAGATTGGGTAGAGGGTGTGCTTTGTGAGGGAATTGGAGTTATTAGAATTATTAGAATGGGAAAGTGTTGGTTTGTTGGAGTGTTGTTTGTGGTGGCATATGGAAGCTTGTTGGTAACAACAATTGGGGTAGAAGGGTACCCAATTGAAGATCTAGTTGTGAAGTTGCCAGGCCAACCCAAAGTTAAATTCAGTCAATATGCTGGTTATGTTGATATAGATATAAAACATGGGAGGAGTCTCTTCTATTATTTTGTTGAGGCTGACCACCTCCCTCACAAAAAGCCTCTCACCCTATGGCTCAATGGAGGTCCGGGATGTTCCTCTATCGGAGGAGGTGCTTTTACTGAATTGGGTCCATTTTATCCTTCTGGTGATGGACGCGGTCTACGAAGAAATTCAAAGTCCTGGAATACAGTTTCCAATCTCCTCTTTGTGGAGTCTCCCGCTGGAGTTGGTTGGTCATACTCAAATACAACTTCTGATTATAACATTGGTGACGCCTCCACAGGACATTACATACCTCAATTAGCCAATGCCATTCTTGATTATAATGCTCATTCATCCAGTTTCAAGTTCAACATAAAAGGAGTTGCCATTGGAAACCCACTTCTGAAAATGGATCGTGATACACAAGCAACATATGAATATTACTGGTCACACGGAATGATTTCGGATGAAATTGGTCTTGCCATTAGGAATGATTGTGATTTTGATGATCATACCCATGCAACTACTCATAACGTATCTAAATCATGCAACGAAGCCAAAAATGCCGCTAGGAAAATTGTGAGCGAGTATGTAGACAACTATGATGTGATTCTTGATGTGTGTTATCCAGCTATAGCTGAACAAGAAATCAGATTGAAAAAGATGGCTACTAAAATAAGTTTAAGTGTAGACGTTTGTATAGATTATGAAAGCTTTAATTACCTCAACCTGCCTGAGGTTCAGAAGGCTCTCCATGCCAACCGTACTAATCTGCCATATCCATGGGGCATGTGTAGTGATGTTTTGAATTACAGCAAGACAGATCCTTACGCTAATATGCTTCCAATTCTCAAACGGATAGTTCAAAATCATATTCCAATATGGGTTTATAGTGGAGACCAAGATTCAGTTGTTCCATTACTAGGTTCTCGAACACTCATTCGTGAACTAGCTCATGACTTGAAATTCAAGATTACAGACTCATATAGAGTTTGGTTCCACAAAGGGCAGGCTGGAGGTTGGGTAACTGAGTATGGAAATTTGTTGATTTTCGCCACTGTAAGAGGAGCGGGTCACATGGTGCCATATGGACAACCTTCTAGGGCATTACATCTATTCAGCTCCTTTGTGCATGGAAAGAGATTGCCAAACACTACTAAACCCTCAATTGGAGAATGA
Protein sequence

>MsG0380016470.01.T01

MKKKVVGGRRRKKKKHDGEEDWVEGVLCEGIGVIRIIRMGKCWFVGVLFVVAYGSLLVTTIGVEGYPIEDLVVKLPGQPKVKFSQYAGYVDIDIKHGRSLFYYFVEADHLPHKKPLTLWLNGGPGCSSIGGGAFTELGPFYPSGDGRGLRRNSKSWNTVSNLLFVESPAGVGWSYSNTTSDYNIGDASTGHYIPQLANAILDYNAHSSSFKFNIKGVAIGNPLLKMDRDTQATYEYYWSHGMISDEIGLAIRNDCDFDDHTHATTHNVSKSCNEAKNAARKIVSEYVDNYDVILDVCYPAIAEQEIRLKKMATKISLSVDVCIDYESFNYLNLPEVQKALHANRTNLPYPWGMCSDVLNYSKTDPYANMLPILKRIVQNHIPIWVYSGDQDSVVPLLGSRTLIRELAHDLKFKITDSYRVWFHKGQAGGWVTEYGNLLIFATVRGAGHMVPYGQPSRALHLFSSFVHGKRLPNTTKPSIGE*