AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016781.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016781.01.T01 MTR_3g095380 96.714 213 7 0 1 213 1 213 3.82e-151 430
MsG0380016781.01.T01 MTR_3g095380 84.211 38 6 0 319 356 281 318 1.11e-11 65.9
MsG0380016781.01.T01 MTR_3g095380 96.714 213 7 0 1 213 1 213 1.21e-150 430
MsG0380016781.01.T01 MTR_3g095380 92.208 77 6 0 319 395 281 357 5.32e-41 148
MsG0380016781.01.T01 MTR_7g089140 31.163 215 119 5 3 200 9 211 1.11e-21 95.1
MsG0380016781.01.T01 MTR_7g089140 31.163 215 119 5 3 200 6 208 1.18e-21 95.1
MsG0380016781.01.T01 MTR_7g089140 34.434 212 116 8 3 200 6 208 1.66e-20 93.2
MsG0380016781.01.T01 MTR_7g089140 34.434 212 116 8 3 200 9 211 1.69e-20 93.2
MsG0380016781.01.T01 MTR_6g041880 52.000 75 34 2 52 126 7 79 5.87e-14 67.4
MsG0380016781.01.T02 MTR_3g095380 96.714 213 7 0 1 213 1 213 3.82e-151 430
MsG0380016781.01.T02 MTR_3g095380 84.211 38 6 0 319 356 281 318 1.11e-11 65.9
MsG0380016781.01.T02 MTR_3g095380 96.714 213 7 0 1 213 1 213 1.21e-150 430
MsG0380016781.01.T02 MTR_3g095380 92.208 77 6 0 319 395 281 357 5.32e-41 148
MsG0380016781.01.T02 MTR_7g089140 31.163 215 119 5 3 200 9 211 1.11e-21 95.1
MsG0380016781.01.T02 MTR_7g089140 31.163 215 119 5 3 200 6 208 1.18e-21 95.1
MsG0380016781.01.T02 MTR_7g089140 34.434 212 116 8 3 200 6 208 1.66e-20 93.2
MsG0380016781.01.T02 MTR_7g089140 34.434 212 116 8 3 200 9 211 1.69e-20 93.2
MsG0380016781.01.T02 MTR_6g041880 52.000 75 34 2 52 126 7 79 5.87e-14 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016781.01.T01 AT5G09850 57.005 207 80 4 1 202 1 203 2.92e-65 212
MsG0380016781.01.T01 AT5G09850 57.005 207 80 4 1 202 1 203 6.84e-65 211
MsG0380016781.01.T01 AT5G09850 55.000 80 28 3 316 395 282 353 2.87e-17 82.8
MsG0380016781.01.T01 AT5G09850 57.005 207 80 4 1 202 1 203 6.84e-65 211
MsG0380016781.01.T01 AT5G09850 55.000 80 28 3 316 395 282 353 2.87e-17 82.8
MsG0380016781.01.T01 AT5G09850 57.005 207 80 4 1 202 1 203 6.84e-65 211
MsG0380016781.01.T01 AT5G09850 55.000 80 28 3 316 395 282 353 2.87e-17 82.8
MsG0380016781.01.T01 AT5G09850 57.005 207 80 4 1 202 1 203 6.84e-65 211
MsG0380016781.01.T01 AT5G09850 55.000 80 28 3 316 395 282 353 2.87e-17 82.8
MsG0380016781.01.T01 AT5G05140 31.132 212 128 6 3 199 7 215 7.10e-16 79.3
MsG0380016781.01.T01 AT3G10820 29.500 200 117 6 1 199 8 184 1.17e-13 73.2
MsG0380016781.01.T01 AT3G10820 29.500 200 117 6 1 199 8 184 1.77e-13 72.0
MsG0380016781.01.T02 AT5G09850 57.005 207 80 4 1 202 1 203 2.92e-65 212
MsG0380016781.01.T02 AT5G09850 57.005 207 80 4 1 202 1 203 6.84e-65 211
MsG0380016781.01.T02 AT5G09850 55.000 80 28 3 316 395 282 353 2.87e-17 82.8
MsG0380016781.01.T02 AT5G09850 57.005 207 80 4 1 202 1 203 6.84e-65 211
MsG0380016781.01.T02 AT5G09850 55.000 80 28 3 316 395 282 353 2.87e-17 82.8
MsG0380016781.01.T02 AT5G09850 57.005 207 80 4 1 202 1 203 6.84e-65 211
MsG0380016781.01.T02 AT5G09850 55.000 80 28 3 316 395 282 353 2.87e-17 82.8
MsG0380016781.01.T02 AT5G09850 57.005 207 80 4 1 202 1 203 6.84e-65 211
MsG0380016781.01.T02 AT5G09850 55.000 80 28 3 316 395 282 353 2.87e-17 82.8
MsG0380016781.01.T02 AT5G05140 31.132 212 128 6 3 199 7 215 7.10e-16 79.3
MsG0380016781.01.T02 AT3G10820 29.500 200 117 6 1 199 8 184 1.17e-13 73.2
MsG0380016781.01.T02 AT3G10820 29.500 200 117 6 1 199 8 184 1.77e-13 72.0

Find 65 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGAAATGATACAGTTTAT+TGG 0.184961 3:-87866704 None:intergenic
GACTGTTCTCTTTCTTGATT+TGG 0.252210 3:-87867289 None:intergenic
CGCAACGAATTTCGATGAAT+TGG 0.261510 3:-87867036 None:intergenic
GTAGATCTGAGAAGGAATTT+AGG 0.268466 3:-87866748 None:intergenic
GTTGACCTCCGTCGCAATTC+TGG 0.284508 3:-87867247 None:intergenic
AGAGAGTAATGAGAATTAAA+AGG 0.294396 3:-87866780 None:intergenic
ACACGGCGGGCGTTGACGTC+TGG 0.362780 3:+87867105 MsG0380016781.01.T01:CDS
CCGCGGCGCGGTTGTCGTTC+CGG 0.369159 3:-87867323 None:intergenic
ATGAGAATTGTTTAATTTGA+AGG 0.390079 3:-87866568 None:intergenic
ACCCACAAACACAAGTTGTT+TGG 0.397818 3:-87866487 None:intergenic
AGTTCAGATCTGAAGGTAAA+CGG 0.443251 3:-87866825 None:intergenic
CGCGATCTCCGTCGCTGCGC+AGG 0.445659 3:+87867142 MsG0380016781.01.T01:CDS
CTTGTGTTTGTGGGTGGAGC+TGG 0.463665 3:+87866495 MsG0380016781.01.T01:five_prime_UTR
CCGTCGCAATTCTGGCAAAT+CGG 0.468609 3:-87867239 None:intergenic
GCTTCTAGAAGATCCTCATC+AGG 0.474811 3:+87867466 MsG0380016781.01.T01:CDS
ACCAAACAACTTGTGTTTGT+GGG 0.481471 3:+87866486 MsG0380016781.01.T01:five_prime_UTR
TGAGAATTGTTTAATTTGAA+GGG 0.481613 3:-87866567 None:intergenic
TTTCCTTCAGACTGCGGCGT+CGG 0.501959 3:-87867362 None:intergenic
CACCAAACAACTTGTGTTTG+TGG 0.502814 3:+87866485 MsG0380016781.01.T01:five_prime_UTR
ATTGTTTAGTTCAGATCTGA+AGG 0.504505 3:-87866832 None:intergenic
ATCTGAGAAGGAATTTAGGT+TGG 0.509149 3:-87866744 None:intergenic
TAAGAATTGTAGATCTGAGA+AGG 0.518399 3:-87866756 None:intergenic
ATTCTTCCTTCATTCACCAC+CGG 0.521919 3:+87866525 MsG0380016781.01.T01:five_prime_UTR
CCTTCAGACTGCGGCGTCGG+AGG 0.522259 3:-87867359 None:intergenic
TGTCGTTCCGGACTCAGACT+AGG 0.527954 3:-87867311 None:intergenic
ATAACGCCGGTGAGCTAAAG+AGG 0.531488 3:+87867165 MsG0380016781.01.T01:CDS
GAACAGTCCTAGTCTGAGTC+CGG 0.534784 3:+87867304 MsG0380016781.01.T01:CDS
CCTCCGACGCCGCAGTCTGA+AGG 0.534970 3:+87867359 MsG0380016781.01.T01:CDS
TGGTAGCCGGTGGTGAATGA+AGG 0.539530 3:-87866531 None:intergenic
GATTGAAGAAATCAAAGAGA+TGG 0.540858 3:-87866992 None:intergenic
GGCGTTATCCTGCGCAGCGA+CGG 0.566982 3:-87867150 None:intergenic
GAGGAGAAGAGACGGAATCG+TGG 0.579304 3:+87867184 MsG0380016781.01.T01:CDS
GAGCTAAAGAGGAGAAGAGA+CGG 0.582096 3:+87867176 MsG0380016781.01.T01:CDS
CGATCTATATTACACACGGC+GGG 0.584757 3:+87867092 MsG0380016781.01.T01:CDS
GAACGACAACCGCGCCGCGG+CGG 0.588629 3:+87867326 MsG0380016781.01.T01:CDS
TCTTCTCCTCTTTAGCTCAC+CGG 0.592478 3:-87867171 None:intergenic
TCATCAAACAAACCACCGTA+AGG 0.594373 3:-87867413 None:intergenic
TTGCACAAGTAGTATGCTAG+TGG 0.596440 3:-87866680 None:intergenic
GATGAGGAGATAGATCCTTA+CGG 0.597718 3:+87867398 MsG0380016781.01.T01:CDS
CCGCCGTGTGTAATATAGAT+CGG 0.605511 3:-87867091 None:intergenic
TAATTAAACAAAACCTGATG+AGG 0.606618 3:-87867479 None:intergenic
AAACGAAGACGGTGAAGATG+AGG 0.609578 3:+87867382 MsG0380016781.01.T01:CDS
GAAGAAGCTCCGCCGCGGCG+CGG 0.611025 3:-87867335 None:intergenic
CTGCGCAGCGACGGAGATCG+CGG 0.611264 3:-87867141 None:intergenic
CCGATTTGCCAGAATTGCGA+CGG 0.612546 3:+87867239 MsG0380016781.01.T01:CDS
CGGAAATCGTCCAAATCCAT+CGG 0.620451 3:-87867071 None:intergenic
CAGTCTGAAGGAAACGAAGA+CGG 0.636870 3:+87867371 MsG0380016781.01.T01:CDS
TGCACAAGTAGTATGCTAGT+GGG 0.636892 3:-87866679 None:intergenic
ATTTGCCAGAATTGCGACGG+AGG 0.638773 3:+87867242 MsG0380016781.01.T01:CDS
GCGTCTCTACGCTGCCACCA+CGG 0.639790 3:+87867208 MsG0380016781.01.T01:CDS
TGTGGGCTAAGGGAGGTGAA+CGG 0.642256 3:-87866444 None:intergenic
CCGGAACGACAACCGCGCCG+CGG 0.654440 3:+87867323 MsG0380016781.01.T01:CDS
GTCGCTGCGCAGGATAACGC+CGG 0.655654 3:+87867152 MsG0380016781.01.T01:CDS
AAACAACTTGTGTTTGTGGG+TGG 0.656542 3:+87866489 MsG0380016781.01.T01:five_prime_UTR
TGTATGTGTACAGTGGTAGC+CGG 0.670468 3:-87866544 None:intergenic
TCTTCGTTTCCTTCAGACTG+CGG 0.687107 3:-87867368 None:intergenic
GAGGAGAAGAAGCTCCGCCG+CGG 0.688012 3:-87867340 None:intergenic
TTTCCGATCTATATTACACA+CGG 0.691280 3:+87867088 MsG0380016781.01.T01:CDS
AATCGGAGTAACCTCCGTGG+TGG 0.706021 3:-87867222 None:intergenic
TGAAGGGTGTATGTGTACAG+TGG 0.717242 3:-87866551 None:intergenic
GAGGAGATAGATCCTTACGG+TGG 0.724438 3:+87867401 MsG0380016781.01.T01:CDS
ATGTGTACAGTGGTAGCCGG+TGG 0.729782 3:-87866541 None:intergenic
CCGATCTATATTACACACGG+CGG 0.755687 3:+87867091 MsG0380016781.01.T01:CDS
GCAAATCGGAGTAACCTCCG+TGG 0.764862 3:-87867225 None:intergenic
TCTCTACGCTGCCACCACGG+AGG 0.775314 3:+87867211 MsG0380016781.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAATAAAAAAAATT+GGG - Chr3:87866861-87866880 None:intergenic 0.0%
!! TAAAATAAAATAAAAAAAAT+TGG - Chr3:87866862-87866881 None:intergenic 0.0%
!!! TTTTTTTTTATTTTTTTTTT+TGG - Chr3:87866961-87866980 None:intergenic 0.0%
!!! TATAAACATATTTTTTCTTG+TGG + Chr3:87869074-87869093 MsG0380016781.01.T01:three_prime_UTR 15.0%
!! AAAAAATATGTTTATAGCGA+GGG - Chr3:87869070-87869089 None:intergenic 20.0%
!! ATTGAAATGATACAGTTTAT+TGG - Chr3:87866707-87866726 None:intergenic 20.0%
!!! AACAAATTTTCAACCATTAT+CGG - Chr3:87868741-87868760 None:intergenic 20.0%
!!! ATGAGAATTGTTTAATTTGA+AGG - Chr3:87866571-87866590 None:intergenic 20.0%
!!! ATGGGTAATGTTAATATTTT+GGG + Chr3:87868020-87868039 MsG0380016781.01.T01:CDS 20.0%
!!! CTTCAGTGATTATTTAATTT+AGG - Chr3:87869110-87869129 None:intergenic 20.0%
!!! GATTTGTTTTTTATTTGTGT+AGG + Chr3:87867759-87867778 MsG0380016781.01.T01:intron 20.0%
!!! TGAGAATTGTTTAATTTGAA+GGG - Chr3:87866570-87866589 None:intergenic 20.0%
!!! TTTTTGTTAAAGTTTGTTGT+TGG + Chr3:87868552-87868571 MsG0380016781.01.T01:intron 20.0%
! AAAAAAGCAAAGAACAATTC+AGG + Chr3:87868837-87868856 MsG0380016781.01.T01:CDS 25.0%
! ACTTCACAAAATTAACACTA+GGG - Chr3:87868601-87868620 None:intergenic 25.0%
! AGAGAGTAATGAGAATTAAA+AGG - Chr3:87866783-87866802 None:intergenic 25.0%
! GAAAAAATATGTTTATAGCG+AGG - Chr3:87869071-87869090 None:intergenic 25.0%
! GTTAAAAAGTAGGAAGTTAA+AGG + Chr3:87868058-87868077 MsG0380016781.01.T01:intron 25.0%
! TAATTAAACAAAACCTGATG+AGG - Chr3:87867482-87867501 None:intergenic 25.0%
! TTGTCAAAGAGTTAAAAAGT+AGG + Chr3:87868048-87868067 MsG0380016781.01.T01:intron 25.0%
!! CATGGGTAATGTTAATATTT+TGG + Chr3:87868019-87868038 MsG0380016781.01.T01:CDS 25.0%
!! TAAACAGTTTTCTTTTCTTC+TGG + Chr3:87866650-87866669 MsG0380016781.01.T01:five_prime_UTR 25.0%
!!! GAAAGAAATTGTTGATGATT+GGG + Chr3:87867962-87867981 MsG0380016781.01.T01:CDS 25.0%
!!! GAAGATGTTTTTTGTTTTGT+GGG - Chr3:87866464-87866483 None:intergenic 25.0%
!!! GTGAATTTTTGATTATGTGT+AGG + Chr3:87867934-87867953 MsG0380016781.01.T01:intron 25.0%
ATCAACCAAATGCAAACAAA+AGG - Chr3:87868358-87868377 None:intergenic 30.0%
ATTCGTGTGAAATTCGTTAA+TGG + Chr3:87868090-87868109 MsG0380016781.01.T01:intron 30.0%
CAACAAGGTTAAAGGAATAT+TGG - Chr3:87868332-87868351 None:intergenic 30.0%
CACTTCACAAAATTAACACT+AGG - Chr3:87868602-87868621 None:intergenic 30.0%
CTTCACAAAATTAACACTAG+GGG - Chr3:87868600-87868619 None:intergenic 30.0%
GATTGAAGAAATCAAAGAGA+TGG - Chr3:87866995-87867014 None:intergenic 30.0%
TAAACAACACACGAAACTTT+AGG - Chr3:87868813-87868832 None:intergenic 30.0%
TAAGAATTGTAGATCTGAGA+AGG - Chr3:87866759-87866778 None:intergenic 30.0%
TATTACATTCCAAGAGTTGA+AGG + Chr3:87867644-87867663 MsG0380016781.01.T01:CDS 30.0%
TTGAGAAATTGCATGAACAA+TGG - Chr3:87868971-87868990 None:intergenic 30.0%
TTTCCGATCTATATTACACA+CGG + Chr3:87867088-87867107 MsG0380016781.01.T01:CDS 30.0%
! ATTGTTTAGTTCAGATCTGA+AGG - Chr3:87866835-87866854 None:intergenic 30.0%
!! GGAAAGAAATTGTTGATGAT+TGG + Chr3:87867961-87867980 MsG0380016781.01.T01:CDS 30.0%
!! TTTTGATTATGTGTAGGAAG+TGG + Chr3:87867940-87867959 MsG0380016781.01.T01:intron 30.0%
!!! AATGCTGTTTTTTGTAGCAT+TGG + Chr3:87867903-87867922 MsG0380016781.01.T01:intron 30.0%
!!! ACTGATTTAGGTTTTGGTTT+TGG - Chr3:87868445-87868464 None:intergenic 30.0%
!!! CGAAGATGTTTTTTGTTTTG+TGG - Chr3:87866465-87866484 None:intergenic 30.0%
!!! TTTTTTGTTTTGTGGGCTAA+GGG - Chr3:87866457-87866476 None:intergenic 30.0%
AAGTAGGAAGTTAAAGGAGT+TGG + Chr3:87868064-87868083 MsG0380016781.01.T01:intron 35.0%
AATCAATCACCTTCAACTCT+TGG - Chr3:87867656-87867675 None:intergenic 35.0%
ACCAAACAACTTGTGTTTGT+GGG + Chr3:87866486-87866505 MsG0380016781.01.T01:five_prime_UTR 35.0%
AGTTCAGATCTGAAGGTAAA+CGG - Chr3:87866828-87866847 None:intergenic 35.0%
ATCTGAGAAGGAATTTAGGT+TGG - Chr3:87866747-87866766 None:intergenic 35.0%
ATTCAAAACCGTACATTCTG+AGG - Chr3:87868531-87868550 None:intergenic 35.0%
CCTAAGTCAAAAGCAAAGAA+TGG + Chr3:87868880-87868899 MsG0380016781.01.T01:CDS 35.0%
GACTGTTCTCTTTCTTGATT+TGG - Chr3:87867292-87867311 None:intergenic 35.0%
GTAGATCTGAGAAGGAATTT+AGG - Chr3:87866751-87866770 None:intergenic 35.0%
TATTCAACATTTGCAGCTGA+TGG + Chr3:87868123-87868142 MsG0380016781.01.T01:intron 35.0%
TCAGTCTGAAGATACTTTGA+TGG + Chr3:87867593-87867612 MsG0380016781.01.T01:intron 35.0%
TTGTGTAGGAAACTGACATA+GGG + Chr3:87867773-87867792 MsG0380016781.01.T01:intron 35.0%
TTTGTGTAGGAAACTGACAT+AGG + Chr3:87867772-87867791 MsG0380016781.01.T01:intron 35.0%
!! AAAGGCATCAACAAGGTTAA+AGG - Chr3:87868340-87868359 None:intergenic 35.0%
!! TGATGCCTTTTGTTTGCATT+TGG + Chr3:87868350-87868369 MsG0380016781.01.T01:intron 35.0%
!! TTACGATTTTCCGATGGATT+TGG + Chr3:87867061-87867080 MsG0380016781.01.T01:exon 35.0%
!! TTTTGTTTGCTGACACAGAT+GGG + Chr3:87868383-87868402 MsG0380016781.01.T01:intron 35.0%
!! TTTTTGTTTGCTGACACAGA+TGG + Chr3:87868382-87868401 MsG0380016781.01.T01:intron 35.0%
!!! CCATTCTTTGCTTTTGACTT+AGG - Chr3:87868883-87868902 None:intergenic 35.0%
!!! GTTTTTTGTTTTGTGGGCTA+AGG - Chr3:87866458-87866477 None:intergenic 35.0%
!!! TTTTGGTTTTGGTTCAGCTT+CGG - Chr3:87868434-87868453 None:intergenic 35.0%
AAACAACTTGTGTTTGTGGG+TGG + Chr3:87866489-87866508 MsG0380016781.01.T01:five_prime_UTR 40.0%
AACTACAAAGAGGCCGATAA+TGG + Chr3:87868725-87868744 MsG0380016781.01.T01:CDS 40.0%
AATCGACGAACATTGCTTGA+TGG - Chr3:87867826-87867845 None:intergenic 40.0%
ACCCACAAACACAAGTTGTT+TGG - Chr3:87866490-87866509 None:intergenic 40.0%
ACCTGATGATTATGCCCATT+TGG - Chr3:87868174-87868193 None:intergenic 40.0%
ATCAAGCAATGTTCGTCGAT+TGG + Chr3:87867825-87867844 MsG0380016781.01.T01:CDS 40.0%
ATTCTTCCTTCATTCACCAC+CGG + Chr3:87866525-87866544 MsG0380016781.01.T01:five_prime_UTR 40.0%
CACCAAACAACTTGTGTTTG+TGG + Chr3:87866485-87866504 MsG0380016781.01.T01:five_prime_UTR 40.0%
CCTGATGATTATGCCCATTT+GGG - Chr3:87868173-87868192 None:intergenic 40.0%
CGCAACGAATTTCGATGAAT+TGG - Chr3:87867039-87867058 None:intergenic 40.0%
CTATTCTCACTGTGTGGATT+TGG - Chr3:87868300-87868319 None:intergenic 40.0%
CTGATGATTATGCCCATTTG+GGG - Chr3:87868172-87868191 None:intergenic 40.0%
GATGAGGAGATAGATCCTTA+CGG + Chr3:87867398-87867417 MsG0380016781.01.T01:CDS 40.0%
GATGGAGTTGCTACAAAATC+TGG + Chr3:87867611-87867630 MsG0380016781.01.T01:CDS 40.0%
GCAAAGAACAATTCAGGTGA+TGG + Chr3:87868843-87868862 MsG0380016781.01.T01:CDS 40.0%
TACTTTGCAAAGCACAAAGG+TGG + Chr3:87868904-87868923 MsG0380016781.01.T01:CDS 40.0%
TCATCAAACAAACCACCGTA+AGG - Chr3:87867416-87867435 None:intergenic 40.0%
TCTCTGTCTCTGCAATCATT+CGG - Chr3:87868642-87868661 None:intergenic 40.0%
TGAAGCAGAATCCACAAAGA+GGG + Chr3:87867985-87868004 MsG0380016781.01.T01:CDS 40.0%
TGCACAAGTAGTATGCTAGT+GGG - Chr3:87866682-87866701 None:intergenic 40.0%
TTGCACAAGTAGTATGCTAG+TGG - Chr3:87866683-87866702 None:intergenic 40.0%
! GGTTACTTTGCAAAGCACAA+AGG + Chr3:87868901-87868920 MsG0380016781.01.T01:CDS 40.0%
! GTAGAAATAGCTTGTGCTGT+GGG + Chr3:87868993-87869012 MsG0380016781.01.T01:three_prime_UTR 40.0%
! TAGAAATAGCTTGTGCTGTG+GGG + Chr3:87868994-87869013 MsG0380016781.01.T01:three_prime_UTR 40.0%
! TCTTTGCGAGGAACTGATTT+AGG - Chr3:87868457-87868476 None:intergenic 40.0%
! TGCGATTTACGATTTTCCGA+TGG + Chr3:87867055-87867074 MsG0380016781.01.T01:exon 40.0%
! TGTAGAAATAGCTTGTGCTG+TGG + Chr3:87868992-87869011 MsG0380016781.01.T01:three_prime_UTR 40.0%
! TTTGGAGAGTACGCAAAATC+AGG - Chr3:87868282-87868301 None:intergenic 40.0%
!! AGAGCAATTTTGATGCAGAG+AGG + Chr3:87868672-87868691 MsG0380016781.01.T01:CDS 40.0%
!! CGAGGAACTGATTTAGGTTT+TGG - Chr3:87868451-87868470 None:intergenic 40.0%
!! GCAAACAAAAGGCATCAACA+AGG - Chr3:87868347-87868366 None:intergenic 40.0%
AAACGAAGACGGTGAAGATG+AGG + Chr3:87867382-87867401 MsG0380016781.01.T01:CDS 45.0%
AGCGAGGGAAAAAAATCCAG+AGG - Chr3:87869055-87869074 None:intergenic 45.0%
ATGATTATGCCCATTTGGGG+TGG - Chr3:87868169-87868188 None:intergenic 45.0%
CAGATGCTATTCTCACTGTG+TGG - Chr3:87868306-87868325 None:intergenic 45.0%
CAGTCTGAAGGAAACGAAGA+CGG + Chr3:87867371-87867390 MsG0380016781.01.T01:CDS 45.0%
CCCAAATGGGCATAATCATC+AGG + Chr3:87868170-87868189 MsG0380016781.01.T01:CDS 45.0%
CCGATCTATATTACACACGG+CGG + Chr3:87867091-87867110 MsG0380016781.01.T01:CDS 45.0%
CCGCCGTGTGTAATATAGAT+CGG - Chr3:87867094-87867113 None:intergenic 45.0%
CGATCTATATTACACACGGC+GGG + Chr3:87867092-87867111 MsG0380016781.01.T01:CDS 45.0%
CGGAAATCGTCCAAATCCAT+CGG - Chr3:87867074-87867093 None:intergenic 45.0%
GAGCTAAAGAGGAGAAGAGA+CGG + Chr3:87867176-87867195 MsG0380016781.01.T01:CDS 45.0%
GCGAGGGAAAAAAATCCAGA+GGG - Chr3:87869054-87869073 None:intergenic 45.0%
GCTTCAAGCGAACTACAAAG+AGG + Chr3:87868715-87868734 MsG0380016781.01.T01:CDS 45.0%
GGAGTTGCTACAAAATCTGG+TGG + Chr3:87867614-87867633 MsG0380016781.01.T01:CDS 45.0%
GTGAAGCAGAATCCACAAAG+AGG + Chr3:87867984-87868003 MsG0380016781.01.T01:CDS 45.0%
TCTTCGTTTCCTTCAGACTG+CGG - Chr3:87867371-87867390 None:intergenic 45.0%
TGCAGAAAACCACCCCAAAT+GGG + Chr3:87868157-87868176 MsG0380016781.01.T01:CDS 45.0%
TGTAGGAAACTGACATAGGG+AGG + Chr3:87867776-87867795 MsG0380016781.01.T01:intron 45.0%
TGTATGTGTACAGTGGTAGC+CGG - Chr3:87866547-87866566 None:intergenic 45.0%
TTGCAGAAAACCACCCCAAA+TGG + Chr3:87868156-87868175 MsG0380016781.01.T01:CDS 45.0%
TTTGCAAAGCACAAAGGTGG+TGG + Chr3:87868907-87868926 MsG0380016781.01.T01:CDS 45.0%
! AGAAATAGCTTGTGCTGTGG+GGG + Chr3:87868995-87869014 MsG0380016781.01.T01:three_prime_UTR 45.0%
! GCTTCTAGAAGATCCTCATC+AGG + Chr3:87867466-87867485 MsG0380016781.01.T01:CDS 45.0%
! TCTTCTCCTCTTTAGCTCAC+CGG - Chr3:87867174-87867193 None:intergenic 45.0%
! TGAAGGGTGTATGTGTACAG+TGG - Chr3:87866554-87866573 None:intergenic 45.0%
!! AAGAGGGAAAAGCACTCTCA+TGG + Chr3:87868001-87868020 MsG0380016781.01.T01:CDS 45.0%
!! AGAGGGAAAAGCACTCTCAT+GGG + Chr3:87868002-87868021 MsG0380016781.01.T01:CDS 45.0%
!! AGAGTGCTTTTCCCTCTTTG+TGG - Chr3:87867999-87868018 None:intergenic 45.0%
!! TTTGGGGTGGTTTTCTGCAA+AGG - Chr3:87868156-87868175 None:intergenic 45.0%
!!! TTTGTTTTGTGGGCTAAGGG+AGG - Chr3:87866454-87866473 None:intergenic 45.0%
AAGACCCACCTCCAAAACCA+AGG + Chr3:87868473-87868492 MsG0380016781.01.T01:CDS 50.0%
ATAACGCCGGTGAGCTAAAG+AGG + Chr3:87867165-87867184 MsG0380016781.01.T01:CDS 50.0%
ATTTGCCAGAATTGCGACGG+AGG + Chr3:87867242-87867261 MsG0380016781.01.T01:CDS 50.0%
CAGAGGGATGAACACGTTTG+AGG - Chr3:87869038-87869057 None:intergenic 50.0%
CCGTCGCAATTCTGGCAAAT+CGG - Chr3:87867242-87867261 None:intergenic 50.0%
CCTCTGCTCCTCAGAATGTA+CGG + Chr3:87868520-87868539 MsG0380016781.01.T01:CDS 50.0%
CTCAAACGTGTTCATCCCTC+TGG + Chr3:87869036-87869055 MsG0380016781.01.T01:three_prime_UTR 50.0%
GAACAGTCCTAGTCTGAGTC+CGG + Chr3:87867304-87867323 MsG0380016781.01.T01:CDS 50.0%
GAGGAGATAGATCCTTACGG+TGG + Chr3:87867401-87867420 MsG0380016781.01.T01:CDS 50.0%
GGAGGTGAACGGACAAAAAC+TGG - Chr3:87866436-87866455 None:intergenic 50.0%
! AAAGGTGGTGGCAGTTCTCA+AGG + Chr3:87868919-87868938 MsG0380016781.01.T01:CDS 50.0%
! ACATTCTGAGGAGCAGAGGT+AGG - Chr3:87868519-87868538 None:intergenic 50.0%
! ATTCTGAGGAGCAGAGGTAG+GGG - Chr3:87868517-87868536 None:intergenic 50.0%
! CATTCTGAGGAGCAGAGGTA+GGG - Chr3:87868518-87868537 None:intergenic 50.0%
! CCGATTTGCCAGAATTGCGA+CGG + Chr3:87867239-87867258 MsG0380016781.01.T01:CDS 50.0%
!! GGCTTGCTGCTGCAAGAAAA+CGG + Chr3:87868693-87868712 MsG0380016781.01.T01:CDS 50.0%
!! GTTCAGCTTCGGAGGTGTTA+CGG - Chr3:87868423-87868442 None:intergenic 50.0%
!!! ATGGCCTTGGTTTTGGAGGT+GGG - Chr3:87868480-87868499 None:intergenic 50.0%
!!! TGGTTTTGGTTCAGCTTCGG+AGG - Chr3:87868431-87868450 None:intergenic 50.0%
AATCGGAGTAACCTCCGTGG+TGG - Chr3:87867225-87867244 None:intergenic 55.0%
AGAGGTAGGGGCAGTAACTG+GGG - Chr3:87868505-87868524 None:intergenic 55.0%
AGCTTGTGCTGTGGGGGATT+GGG + Chr3:87869001-87869020 MsG0380016781.01.T01:three_prime_UTR 55.0%
ATGTGTACAGTGGTAGCCGG+TGG - Chr3:87866544-87866563 None:intergenic 55.0%
CAGAGGTAGGGGCAGTAACT+GGG - Chr3:87868506-87868525 None:intergenic 55.0%
CTTGTGTTTGTGGGTGGAGC+TGG + Chr3:87866495-87866514 MsG0380016781.01.T01:five_prime_UTR 55.0%
GAGGAGAAGAGACGGAATCG+TGG + Chr3:87867184-87867203 MsG0380016781.01.T01:CDS 55.0%
GCAAATCGGAGTAACCTCCG+TGG - Chr3:87867228-87867247 None:intergenic 55.0%
GTGGTGGCAGTTCTCAAGGA+AGG + Chr3:87868923-87868942 MsG0380016781.01.T01:CDS 55.0%
GTTCTCAAGGAAGGCAGCAC+TGG + Chr3:87868932-87868951 MsG0380016781.01.T01:CDS 55.0%
GTTGACCTCCGTCGCAATTC+TGG - Chr3:87867250-87867269 None:intergenic 55.0%
TGGTAGCCGGTGGTGAATGA+AGG - Chr3:87866534-87866553 None:intergenic 55.0%
TGTCGTTCCGGACTCAGACT+AGG - Chr3:87867314-87867333 None:intergenic 55.0%
TTTCCTTCAGACTGCGGCGT+CGG - Chr3:87867365-87867384 None:intergenic 55.0%
TTTGGAGGTGGGTCTTTGCG+AGG - Chr3:87868469-87868488 None:intergenic 55.0%
! CCGTACATTCTGAGGAGCAG+AGG - Chr3:87868523-87868542 None:intergenic 55.0%
! TAGCTTGTGCTGTGGGGGAT+TGG + Chr3:87869000-87869019 MsG0380016781.01.T01:three_prime_UTR 55.0%
! TGTGGGCTAAGGGAGGTGAA+CGG - Chr3:87866447-87866466 None:intergenic 55.0%
!! AGCTTCGGAGGTGTTACGGT+CGG - Chr3:87868419-87868438 None:intergenic 55.0%
!!! GATGGCCTTGGTTTTGGAGG+TGG - Chr3:87868481-87868500 None:intergenic 55.0%
AGGTAGGGGCAGTAACTGGG+GGG - Chr3:87868503-87868522 None:intergenic 60.0%
AGTAACTGGGGGGATGGCCT+TGG - Chr3:87868493-87868512 None:intergenic 60.0%
GAGGTAGGGGCAGTAACTGG+GGG - Chr3:87868504-87868523 None:intergenic 60.0%
GCAGAGGTAGGGGCAGTAAC+TGG - Chr3:87868507-87868526 None:intergenic 60.0%
GCTGACACAGATGGGAGCTC+TGG + Chr3:87868391-87868410 MsG0380016781.01.T01:intron 60.0%
!! TGGGGGGATGGCCTTGGTTT+TGG - Chr3:87868487-87868506 None:intergenic 60.0%
!!! GGGGATGGCCTTGGTTTTGG+AGG - Chr3:87868484-87868503 None:intergenic 60.0%
AGGGGCAGTAACTGGGGGGA+TGG - Chr3:87868499-87868518 None:intergenic 65.0%
GAGGAGAAGAAGCTCCGCCG+CGG - Chr3:87867343-87867362 None:intergenic 65.0%
GCGTCTCTACGCTGCCACCA+CGG + Chr3:87867208-87867227 MsG0380016781.01.T01:CDS 65.0%
GGCGTTATCCTGCGCAGCGA+CGG - Chr3:87867153-87867172 None:intergenic 65.0%
GTCGCTGCGCAGGATAACGC+CGG + Chr3:87867152-87867171 MsG0380016781.01.T01:CDS 65.0%
TCTCTACGCTGCCACCACGG+AGG + Chr3:87867211-87867230 MsG0380016781.01.T01:CDS 65.0%
CCTCCGACGCCGCAGTCTGA+AGG + Chr3:87867359-87867378 MsG0380016781.01.T01:CDS 70.0%
CTGCGCAGCGACGGAGATCG+CGG - Chr3:87867144-87867163 None:intergenic 70.0%
! CCTTCAGACTGCGGCGTCGG+AGG - Chr3:87867362-87867381 None:intergenic 70.0%
!! ACACGGCGGGCGTTGACGTC+TGG + Chr3:87867105-87867124 MsG0380016781.01.T01:CDS 70.0%
CCGCGGCGCGGTTGTCGTTC+CGG - Chr3:87867326-87867345 None:intergenic 75.0%
CCGGAACGACAACCGCGCCG+CGG + Chr3:87867323-87867342 MsG0380016781.01.T01:CDS 75.0%
CGCGATCTCCGTCGCTGCGC+AGG + Chr3:87867142-87867161 MsG0380016781.01.T01:CDS 75.0%
GAACGACAACCGCGCCGCGG+CGG + Chr3:87867326-87867345 MsG0380016781.01.T01:CDS 75.0%
GAAGAAGCTCCGCCGCGGCG+CGG - Chr3:87867338-87867357 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 87866435 87869143 87866435 ID=MsG0380016781.01;Name=MsG0380016781.01
Chr3 mRNA 87866435 87869143 87866435 ID=MsG0380016781.01.T01;Parent=MsG0380016781.01;Name=MsG0380016781.01.T01;_AED=0.23;_eAED=0.23;_QI=613|0.75|0.66|1|0.62|0.33|9|186|395
Chr3 exon 87866435 87866969 87866435 ID=MsG0380016781.01.T01:exon:22660;Parent=MsG0380016781.01.T01
Chr3 exon 87866996 87867487 87866996 ID=MsG0380016781.01.T01:exon:22661;Parent=MsG0380016781.01.T01
Chr3 five_prime_UTR 87866435 87866969 87866435 ID=MsG0380016781.01.T01:five_prime_utr;Parent=MsG0380016781.01.T01
Chr3 five_prime_UTR 87866996 87867073 87866996 ID=MsG0380016781.01.T01:five_prime_utr;Parent=MsG0380016781.01.T01
Chr3 CDS 87867074 87867487 87867074 ID=MsG0380016781.01.T01:cds;Parent=MsG0380016781.01.T01
Chr3 CDS 87867597 87867665 87867597 ID=MsG0380016781.01.T01:cds;Parent=MsG0380016781.01.T01
Chr3 CDS 87867781 87867863 87867781 ID=MsG0380016781.01.T01:cds;Parent=MsG0380016781.01.T01
Chr3 CDS 87867956 87868049 87867956 ID=MsG0380016781.01.T01:cds;Parent=MsG0380016781.01.T01
Chr3 CDS 87868139 87868309 87868139 ID=MsG0380016781.01.T01:cds;Parent=MsG0380016781.01.T01
Chr3 CDS 87868401 87868541 87868401 ID=MsG0380016781.01.T01:cds;Parent=MsG0380016781.01.T01
Chr3 CDS 87868653 87868746 87868653 ID=MsG0380016781.01.T01:cds;Parent=MsG0380016781.01.T01
Chr3 CDS 87868836 87868957 87868836 ID=MsG0380016781.01.T01:cds;Parent=MsG0380016781.01.T01
Chr3 three_prime_UTR 87868958 87869143 87868958 ID=MsG0380016781.01.T01:three_prime_utr;Parent=MsG0380016781.01.T01
Chr3 mRNA 87866678 87869143 87866678 ID=MsG0380016781.01.T02;Parent=MsG0380016781.01;Name=MsG0380016781.01.T02;_AED=0.26;_eAED=0.26;_QI=396|0.71|0.62|1|0.71|0.5|8|186|395
Chr3 exon 87866678 87867487 87866678 ID=MsG0380016781.01.T02:exon:22669;Parent=MsG0380016781.01.T02
Chr3 five_prime_UTR 87866678 87867073 87866678 ID=MsG0380016781.01.T02:five_prime_utr;Parent=MsG0380016781.01.T02
Chr3 CDS 87867074 87867487 87867074 ID=MsG0380016781.01.T02:cds;Parent=MsG0380016781.01.T02
Chr3 CDS 87867597 87867665 87867597 ID=MsG0380016781.01.T02:cds;Parent=MsG0380016781.01.T02
Chr3 CDS 87867781 87867863 87867781 ID=MsG0380016781.01.T02:cds;Parent=MsG0380016781.01.T02
Chr3 CDS 87867956 87868049 87867956 ID=MsG0380016781.01.T02:cds;Parent=MsG0380016781.01.T02
Chr3 CDS 87868139 87868309 87868139 ID=MsG0380016781.01.T02:cds;Parent=MsG0380016781.01.T02
Chr3 CDS 87868401 87868541 87868401 ID=MsG0380016781.01.T02:cds;Parent=MsG0380016781.01.T02
Chr3 CDS 87868653 87868746 87868653 ID=MsG0380016781.01.T02:cds;Parent=MsG0380016781.01.T02
Chr3 CDS 87868836 87868957 87868836 ID=MsG0380016781.01.T02:cds;Parent=MsG0380016781.01.T02
Chr3 three_prime_UTR 87868958 87869143 87868958 ID=MsG0380016781.01.T02:three_prime_utr;Parent=MsG0380016781.01.T02
Gene Sequence

>MsG0380016781.01.T01

ATGGATTTGGACGATTTCCGATCTATATTACACACGGCGGGCGTTGACGTCTGGATGTTCATCGACACCGCGATCTCCGTCGCTGCGCAGGATAACGCCGGTGAGCTAAAGAGGAGAAGAGACGGAATCGTGGAGCGTCTCTACGCTGCCACCACGGAGGTTACTCCGATTTGCCAGAATTGCGACGGAGGTCAACGTCTTGTGACAAACGATAACCAAATCAAGAAAGAGAACAGTCCTAGTCTGAGTCCGGAACGACAACCGCGCCGCGGCGGAGCTTCTTCTCCTCCGACGCCGCAGTCTGAAGGAAACGAAGACGGTGAAGATGAGGAGATAGATCCTTACGGTGGTTTGTTTGATGATGAACAGAAGAAGATTCTAGAGATTAAAGAGCTTCTAGAAGATCCTCATCAGTCTGAAGATACTTTGATGGAGTTGCTACAAAATCTGGTGGATATTGATATTACATTCCAAGAGTTGAAGGAAACTGACATAGGGAGGAACGTGAATCAGTTGCGAAAACATCCATCAAGCAATGTTCGTCGATTGGTGAAGCTACTTGTCAAGAAGTGGAAAGAAATTGTTGATGATTGGGTGAAGCAGAATCCACAAAGAGGGAAAAGCACTCTCATGGGTAATGTTAATATTTTGGGAGTATTTCTGATGGAGACTCTCCTTTGCAGAAAACCACCCCAAATGGGCATAATCATCAGGTCAAAGAAATCTTTTATTCTATTTGCTTTTGAAAAGTTGAAGCAATTAAGCTTGCTAATGTTGTGTTTTATTCGTTTATGCAGATTCCTGATTTTGCGTACTCTCCAAATCCACACAATGGGAGCTCTGGTTCCGACCGTAACACCTCCGAAGCTGAACCAAAACCAAAACCTAAATCAGTTCCTCGCAAAGACCCACCTCCAAAACCAAGGCCATCCCCCCAGTTACTGCCCCTACCTCTGCTCCTCAGAATGTACGAGACAGAGAGAACAGAAAGAGAGCAATTTTGATGCAGAGAGGCTTGCTGCTGCAAGAAAACGGCTTCAAGCGAACTACAAAGAGGCCGATAATGCAAAAAAGCAAAGAACAATTCAGGTGATGGACATACATGAGTTACCTAAGTCAAAAGCAAAGAATGGTTACTTTGCAAAGCACAAAGGTGGTGGCAGTTCTCAAGGAAGGCAGCACTGGTGA

>MsG0380016781.01.T02

ATGGATTTGGACGATTTCCGATCTATATTACACACGGCGGGCGTTGACGTCTGGATGTTCATCGACACCGCGATCTCCGTCGCTGCGCAGGATAACGCCGGTGAGCTAAAGAGGAGAAGAGACGGAATCGTGGAGCGTCTCTACGCTGCCACCACGGAGGTTACTCCGATTTGCCAGAATTGCGACGGAGGTCAACGTCTTGTGACAAACGATAACCAAATCAAGAAAGAGAACAGTCCTAGTCTGAGTCCGGAACGACAACCGCGCCGCGGCGGAGCTTCTTCTCCTCCGACGCCGCAGTCTGAAGGAAACGAAGACGGTGAAGATGAGGAGATAGATCCTTACGGTGGTTTGTTTGATGATGAACAGAAGAAGATTCTAGAGATTAAAGAGCTTCTAGAAGATCCTCATCAGTCTGAAGATACTTTGATGGAGTTGCTACAAAATCTGGTGGATATTGATATTACATTCCAAGAGTTGAAGGAAACTGACATAGGGAGGAACGTGAATCAGTTGCGAAAACATCCATCAAGCAATGTTCGTCGATTGGTGAAGCTACTTGTCAAGAAGTGGAAAGAAATTGTTGATGATTGGGTGAAGCAGAATCCACAAAGAGGGAAAAGCACTCTCATGGGTAATGTTAATATTTTGGGAGTATTTCTGATGGAGACTCTCCTTTGCAGAAAACCACCCCAAATGGGCATAATCATCAGGTCAAAGAAATCTTTTATTCTATTTGCTTTTGAAAAGTTGAAGCAATTAAGCTTGCTAATGTTGTGTTTTATTCGTTTATGCAGATTCCTGATTTTGCGTACTCTCCAAATCCACACAATGGGAGCTCTGGTTCCGACCGTAACACCTCCGAAGCTGAACCAAAACCAAAACCTAAATCAGTTCCTCGCAAAGACCCACCTCCAAAACCAAGGCCATCCCCCCAGTTACTGCCCCTACCTCTGCTCCTCAGAATGTACGAGACAGAGAGAACAGAAAGAGAGCAATTTTGATGCAGAGAGGCTTGCTGCTGCAAGAAAACGGCTTCAAGCGAACTACAAAGAGGCCGATAATGCAAAAAAGCAAAGAACAATTCAGGTGATGGACATACATGAGTTACCTAAGTCAAAAGCAAAGAATGGTTACTTTGCAAAGCACAAAGGTGGTGGCAGTTCTCAAGGAAGGCAGCACTGGTGA
Protein sequence

>MsG0380016781.01.T01

MDLDDFRSILHTAGVDVWMFIDTAISVAAQDNAGELKRRRDGIVERLYAATTEVTPICQNCDGGQRLVTNDNQIKKENSPSLSPERQPRRGGASSPPTPQSEGNEDGEDEEIDPYGGLFDDEQKKILEIKELLEDPHQSEDTLMELLQNLVDIDITFQELKETDIGRNVNQLRKHPSSNVRRLVKLLVKKWKEIVDDWVKQNPQRGKSTLMGNVNILGVFLMETLLCRKPPQMGIIIRSKKSFILFAFEKLKQLSLLMLCFIRLCRFLILRTLQIHTMGALVPTVTPPKLNQNQNLNQFLAKTHLQNQGHPPSYCPYLCSSECTRQREQKESNFDAERLAAARKRLQANYKEADNAKKQRTIQVMDIHELPKSKAKNGYFAKHKGGGSSQGRQHW*

>MsG0380016781.01.T02

MDLDDFRSILHTAGVDVWMFIDTAISVAAQDNAGELKRRRDGIVERLYAATTEVTPICQNCDGGQRLVTNDNQIKKENSPSLSPERQPRRGGASSPPTPQSEGNEDGEDEEIDPYGGLFDDEQKKILEIKELLEDPHQSEDTLMELLQNLVDIDITFQELKETDIGRNVNQLRKHPSSNVRRLVKLLVKKWKEIVDDWVKQNPQRGKSTLMGNVNILGVFLMETLLCRKPPQMGIIIRSKKSFILFAFEKLKQLSLLMLCFIRLCRFLILRTLQIHTMGALVPTVTPPKLNQNQNLNQFLAKTHLQNQGHPPSYCPYLCSSECTRQREQKESNFDAERLAAARKRLQANYKEADNAKKQRTIQVMDIHELPKSKAKNGYFAKHKGGGSSQGRQHW*