Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016793.01.T01 | KEH35587.1 | 90.485 | 536 | 25 | 2 | 1 | 511 | 1 | 535 | 0 | 842 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016793.01.T01 | F4J8V5 | 48.555 | 519 | 201 | 15 | 11 | 491 | 14 | 504 | 3.52E-84 | 275 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016793.01.T01 | A0A072V173 | 90.485 | 536 | 25 | 2 | 1 | 511 | 1 | 535 | 0.0 | 842 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0380012125.01 | MsG0380016793.01 | 0.803511 | 3.366799e-49 | 1.695135e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016793.01.T01 | MTR_3g095570 | 90.485 | 536 | 25 | 2 | 1 | 511 | 1 | 535 | 0.0 | 842 |
| MsG0380016793.01.T01 | MTR_3g095570 | 90.891 | 516 | 21 | 2 | 1 | 491 | 1 | 515 | 0.0 | 808 |
| MsG0380016793.01.T01 | MTR_3g095570 | 89.847 | 522 | 27 | 2 | 1 | 497 | 1 | 521 | 0.0 | 805 |
| MsG0380016793.01.T01 | MTR_8g093050 | 47.772 | 404 | 159 | 12 | 1 | 365 | 1 | 391 | 3.37e-90 | 287 |
| MsG0380016793.01.T01 | MTR_8g093050 | 60.656 | 61 | 21 | 1 | 431 | 491 | 388 | 445 | 1.32e-15 | 80.1 |
| MsG0380016793.01.T01 | MTR_8g093050 | 48.533 | 375 | 144 | 10 | 1 | 339 | 1 | 362 | 2.63e-88 | 282 |
| MsG0380016793.01.T01 | MTR_8g093050 | 57.353 | 68 | 26 | 1 | 424 | 491 | 355 | 419 | 2.30e-16 | 82.4 |
| MsG0380016793.01.T01 | MTR_5g068710 | 33.714 | 525 | 256 | 18 | 1 | 484 | 1 | 474 | 1.58e-65 | 223 |
| MsG0380016793.01.T01 | MTR_5g068710 | 33.846 | 520 | 252 | 18 | 6 | 484 | 5 | 473 | 4.38e-65 | 221 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016793.01.T01 | AT3G18770 | 48.555 | 519 | 201 | 15 | 11 | 491 | 14 | 504 | 3.59e-85 | 275 |
| MsG0380016793.01.T01 | AT3G49590 | 30.220 | 546 | 262 | 16 | 10 | 484 | 9 | 506 | 8.51e-48 | 175 |
| MsG0380016793.01.T01 | AT3G49590 | 30.075 | 532 | 266 | 16 | 10 | 484 | 9 | 491 | 3.82e-46 | 170 |
| MsG0380016793.01.T01 | AT3G49590 | 30.075 | 532 | 266 | 16 | 10 | 484 | 9 | 491 | 3.82e-46 | 170 |
Find 101 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATCACCTATCTATAGTT+TGG | 0.232743 | 3:-87983007 | MsG0380016793.01.T01:CDS |
| GAACCTTTGGAGAGAAATTA+AGG | 0.234169 | 3:+87983849 | None:intergenic |
| AGAAACCCCTTTGAAGAATT+AGG | 0.243271 | 3:-87983809 | MsG0380016793.01.T01:CDS |
| GCTTCTTGTTTAGTAGTAAA+TGG | 0.254563 | 3:+87983510 | None:intergenic |
| TTATGAAAGCAAGAAAATTA+AGG | 0.283270 | 3:-87983738 | MsG0380016793.01.T01:CDS |
| TTCTGGTAGGCTGTGTTTAT+CGG | 0.301005 | 3:-87983448 | MsG0380016793.01.T01:CDS |
| TAGATTGAACCATTTGTCTC+TGG | 0.302069 | 3:+87983970 | None:intergenic |
| TCATCACCTATCTATAGTTT+GGG | 0.303996 | 3:-87983006 | MsG0380016793.01.T01:CDS |
| CAACTATGTCTCCTCGAAAA+TGG | 0.326218 | 3:+87983258 | None:intergenic |
| AATTGTGGTTGATGTTGTTT+TGG | 0.332000 | 3:-87983882 | MsG0380016793.01.T01:CDS |
| TTTACAAAAGATCGAACCTT+TGG | 0.360433 | 3:+87983836 | None:intergenic |
| GAGCTCTAGCAGGTCTTATC+AGG | 0.364942 | 3:-87982604 | MsG0380016793.01.T01:CDS |
| GAATTAGCAACTTCAGCATT+AGG | 0.366731 | 3:+87982931 | None:intergenic |
| GTGCACCTTGAAATTCTAAT+AGG | 0.367047 | 3:+87982868 | None:intergenic |
| TTCACCTTCACCTACACATT+CGG | 0.390828 | 3:-87983190 | MsG0380016793.01.T01:CDS |
| ATGAGAAGATTGTTGAAAGA+TGG | 0.400050 | 3:-87983769 | MsG0380016793.01.T01:CDS |
| GAGGGAGATGGAGAGAAATT+CGG | 0.400789 | 3:+87983039 | None:intergenic |
| CTACTCCTATTAGAATTTCA+AGG | 0.412567 | 3:-87982873 | MsG0380016793.01.T01:CDS |
| ACTCCTGTGGATACTAATTC+TGG | 0.420684 | 3:-87983465 | MsG0380016793.01.T01:CDS |
| AAAACAACATCAACCACAAT+TGG | 0.420756 | 3:+87983884 | None:intergenic |
| TCTTGTAGTGTTTGCAGTGT+TGG | 0.448276 | 3:+87983703 | None:intergenic |
| ATAAGACCTGCTAGAGCTCC+TGG | 0.452474 | 3:+87982608 | None:intergenic |
| TGTGGAGACAAAGGAGTTGT+TGG | 0.454147 | 3:+87983387 | None:intergenic |
| ATGATGCAACATACCTTCTC+AGG | 0.465690 | 3:+87982799 | None:intergenic |
| TAAGTTTGTGTTCACTCCTG+TGG | 0.467225 | 3:-87983478 | MsG0380016793.01.T01:CDS |
| GATGAAGAAGGAGAGGGAGA+TGG | 0.469660 | 3:+87983027 | None:intergenic |
| CACTTGAAAACGCTGACCTA+TGG | 0.470379 | 3:-87983925 | MsG0380016793.01.T01:CDS |
| AATGACCCCAAACTATAGAT+AGG | 0.476662 | 3:+87983000 | None:intergenic |
| AGGTGATGATGAAGAAGGAG+AGG | 0.478454 | 3:+87983020 | None:intergenic |
| CCCTTTGAAGAATTAGGAGG+TGG | 0.478837 | 3:-87983803 | MsG0380016793.01.T01:CDS |
| GTTTCTAATGCTAGCTCTCA+AGG | 0.480022 | 3:-87983153 | MsG0380016793.01.T01:CDS |
| TCGTCATCATCCACGTCAAA+AGG | 0.481721 | 3:+87982552 | None:intergenic |
| GTATGTTTCTGATGTGAGTT+CGG | 0.485339 | 3:-87983412 | MsG0380016793.01.T01:CDS |
| AAACCTTAATTTCTCTCCAA+AGG | 0.489105 | 3:-87983852 | MsG0380016793.01.T01:CDS |
| CCACCTCCTAATTCTTCAAA+GGG | 0.489333 | 3:+87983803 | None:intergenic |
| TTATGCCTACTGCTATGTCC+AGG | 0.490854 | 3:+87982907 | None:intergenic |
| TGTGATGGCATTCTAACAAC+AGG | 0.493637 | 3:+87983303 | None:intergenic |
| AGATTGAACCATTTGTCTCT+GGG | 0.504376 | 3:+87983971 | None:intergenic |
| TCGGTAGTCCTTTGACTGAT+CGG | 0.505474 | 3:-87983347 | MsG0380016793.01.T01:CDS |
| GAAGATTATTGTGGCGCCAT+AGG | 0.506592 | 3:+87983909 | None:intergenic |
| GCTGAAGTTGCTAATTCCCC+TGG | 0.511353 | 3:-87982925 | MsG0380016793.01.T01:CDS |
| TTTCGTCACTAAAATTCGTA+GGG | 0.514776 | 3:-87982505 | MsG0380016793.01.T01:CDS |
| CTCTTGATTCTATGATTATG+TGG | 0.516420 | 3:+87984074 | None:intergenic |
| GACATTTCACTTGGATGAGG+AGG | 0.516778 | 3:+87983108 | None:intergenic |
| GGTGATGATGAAGAAGGAGA+GGG | 0.521681 | 3:+87983021 | None:intergenic |
| CCCACCTCCTAATTCTTCAA+AGG | 0.522947 | 3:+87983802 | None:intergenic |
| TGAAGCAAAGACATTTCACT+TGG | 0.523242 | 3:+87983099 | None:intergenic |
| GTGACGAAATACCTGCTGCC+TGG | 0.524562 | 3:+87982519 | None:intergenic |
| CTTCTGAGACGGAGAGAAGT+AGG | 0.524609 | 3:-87982846 | MsG0380016793.01.T01:CDS |
| GATGACGATACAACGGATCC+AGG | 0.530434 | 3:-87982537 | MsG0380016793.01.T01:CDS |
| GTGTTCGACCCAGAGACAAA+TGG | 0.534628 | 3:-87983979 | MsG0380016793.01.T01:CDS |
| CAATAATCTTCAGCCAATTG+TGG | 0.545469 | 3:-87983897 | MsG0380016793.01.T01:CDS |
| ATTTCGTCACTAAAATTCGT+AGG | 0.547052 | 3:-87982506 | MsG0380016793.01.T01:CDS |
| TTCAAGGTGCACTTCTGAGA+CGG | 0.551391 | 3:-87982857 | MsG0380016793.01.T01:CDS |
| TAGATAGGTGATGATGAAGA+AGG | 0.554958 | 3:+87983015 | None:intergenic |
| GAATAATAATTAACTGTAGG+AGG | 0.556994 | 3:+87983210 | None:intergenic |
| AAAGACATTTCACTTGGATG+AGG | 0.562423 | 3:+87983105 | None:intergenic |
| GGTGAATAATAATTAACTGT+AGG | 0.562951 | 3:+87983207 | None:intergenic |
| TCAGCATTAGGTATGTTGAC+AGG | 0.567209 | 3:+87982943 | None:intergenic |
| GAAGATGAAGAAGTTGAAGA+TGG | 0.569202 | 3:+87984010 | None:intergenic |
| ATACAACGGATCCAGGCAGC+AGG | 0.570876 | 3:-87982530 | MsG0380016793.01.T01:CDS |
| ACATAATCAGTTATAACTTG+TGG | 0.573505 | 3:+87983369 | None:intergenic |
| GCATCAACTACTTATATCAA+AGG | 0.577119 | 3:+87982456 | None:intergenic |
| GTTATAACTTGTGGAGACAA+AGG | 0.588424 | 3:+87983378 | None:intergenic |
| CTACCAGAATTAGTATCCAC+AGG | 0.589896 | 3:+87983462 | None:intergenic |
| TGCTTCAGTTTGAGCGTGTG+AGG | 0.590550 | 3:+87984141 | None:intergenic |
| CTCGAAAATGGCAATGACGA+CGG | 0.592943 | 3:+87983270 | None:intergenic |
| CTCATCAACCGATCAGTCAA+AGG | 0.593790 | 3:+87983339 | None:intergenic |
| TGCTGTAGGACATTCTCTGA+GGG | 0.593823 | 3:+87983946 | None:intergenic |
| GACGGAGAAGAGCCATGTGA+TGG | 0.601182 | 3:+87983288 | None:intergenic |
| TATGCCTACTGCTATGTCCA+GGG | 0.601199 | 3:+87982908 | None:intergenic |
| GAAATTCTAATAGGAGTAGA+CGG | 0.601578 | 3:+87982877 | None:intergenic |
| GATGGAGAGAAATTCGGTGA+GGG | 0.602678 | 3:+87983045 | None:intergenic |
| CTTTGACTGATCGGTTGATG+AGG | 0.605573 | 3:-87983338 | MsG0380016793.01.T01:CDS |
| ACATTCGGAATCACACACAT+TGG | 0.606208 | 3:-87983175 | MsG0380016793.01.T01:CDS |
| ATCATGCATTATGCCTGAGA+AGG | 0.611310 | 3:-87982812 | MsG0380016793.01.T01:intron |
| CTGTGGATACTAATTCTGGT+AGG | 0.618588 | 3:-87983461 | MsG0380016793.01.T01:CDS |
| TCTGGGTCGAACACTTGATG+AGG | 0.624098 | 3:+87983988 | None:intergenic |
| GGATGAGGAGGCAAACTAGA+GGG | 0.624466 | 3:+87983120 | None:intergenic |
| AGATGGAGAGAAATTCGGTG+AGG | 0.625978 | 3:+87983044 | None:intergenic |
| ATTCCCCTGGACATAGCAGT+AGG | 0.629111 | 3:-87982912 | MsG0380016793.01.T01:CDS |
| AACCCCTTTGAAGAATTAGG+AGG | 0.632921 | 3:-87983806 | MsG0380016793.01.T01:CDS |
| CAATTGGCTGAAGATTATTG+TGG | 0.637979 | 3:+87983900 | None:intergenic |
| CCTTTGAAGAATTAGGAGGT+GGG | 0.638950 | 3:-87983802 | MsG0380016793.01.T01:CDS |
| ACACTGCAAACACTACAAGA+AGG | 0.644134 | 3:-87983700 | MsG0380016793.01.T01:intron |
| GTTGTTAGAATGCCATCACA+TGG | 0.644232 | 3:-87983300 | MsG0380016793.01.T01:CDS |
| GAACTCACATCAGAAACATA+CGG | 0.644354 | 3:+87983414 | None:intergenic |
| ATTCTAACAACAGGAAGCGA+CGG | 0.649152 | 3:+87983312 | None:intergenic |
| TTCGTCACTAAAATTCGTAG+GGG | 0.649970 | 3:-87982504 | MsG0380016793.01.T01:CDS |
| ATGCCTACTGCTATGTCCAG+GGG | 0.650548 | 3:+87982909 | None:intergenic |
| GTGCTGTAGGACATTCTCTG+AGG | 0.655266 | 3:+87983945 | None:intergenic |
| CAAGTTATAACTGATTATGT+CGG | 0.655806 | 3:-87983366 | MsG0380016793.01.T01:CDS |
| CATCACCTATCTATAGTTTG+GGG | 0.658312 | 3:-87983005 | MsG0380016793.01.T01:CDS |
| CACCTCCTAATTCTTCAAAG+GGG | 0.662367 | 3:+87983804 | None:intergenic |
| TGAGGAGGCAAACTAGAGGG+TGG | 0.663076 | 3:+87983123 | None:intergenic |
| TGGATGAGGAGGCAAACTAG+AGG | 0.668714 | 3:+87983119 | None:intergenic |
| CGTGGATGATGACGATACAA+CGG | 0.685449 | 3:-87982544 | MsG0380016793.01.T01:CDS |
| GTGTGTGATTCCGAATGTGT+AGG | 0.689442 | 3:+87983180 | None:intergenic |
| GATTCCGAATGTGTAGGTGA+AGG | 0.732416 | 3:+87983186 | None:intergenic |
| CTCCTGGAAAATGAAATCTG+TGG | 0.734408 | 3:+87982624 | None:intergenic |
| ATTCTAATAGGAGTAGACGG+CGG | 0.805061 | 3:+87982880 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAAACATTCAATATGAT+TGG | + | Chr3:87983859-87983878 | None:intergenic | 20.0% |
| !! | TTATGAAAGCAAGAAAATTA+AGG | - | Chr3:87982883-87982902 | MsG0380016793.01.T01:CDS | 20.0% |
| ! | AAGAAATCTACTTTGCTTTA+AGG | - | Chr3:87982974-87982993 | MsG0380016793.01.T01:CDS | 25.0% |
| ! | ACATAATCAGTTATAACTTG+TGG | + | Chr3:87983255-87983274 | None:intergenic | 25.0% |
| ! | CAAGTTATAACTGATTATGT+CGG | - | Chr3:87983255-87983274 | MsG0380016793.01.T01:CDS | 25.0% |
| ! | GAATAATAATTAACTGTAGG+AGG | + | Chr3:87983414-87983433 | None:intergenic | 25.0% |
| ! | GGTGAATAATAATTAACTGT+AGG | + | Chr3:87983417-87983436 | None:intergenic | 25.0% |
| ! | TCCTTAAAAATCTTAAAAGC+AGG | + | Chr3:87983027-87983046 | None:intergenic | 25.0% |
| !!! | ACCTGCTTTTAAGATTTTTA+AGG | - | Chr3:87983023-87983042 | MsG0380016793.01.T01:CDS | 25.0% |
| !!! | TTCATCTTACTGTTGTTTTT+TGG | - | Chr3:87983898-87983917 | MsG0380016793.01.T01:CDS | 25.0% |
| AAAACAACATCAACCACAAT+TGG | + | Chr3:87982740-87982759 | None:intergenic | 30.0% | |
| AAACCTTAATTTCTCTCCAA+AGG | - | Chr3:87982769-87982788 | MsG0380016793.01.T01:intron | 30.0% | |
| ATCATCACCTATCTATAGTT+TGG | - | Chr3:87983614-87983633 | MsG0380016793.01.T01:intron | 30.0% | |
| ATGAGAAGATTGTTGAAAGA+TGG | - | Chr3:87982852-87982871 | MsG0380016793.01.T01:CDS | 30.0% | |
| ATTTCGTCACTAAAATTCGT+AGG | - | Chr3:87984115-87984134 | MsG0380016793.01.T01:CDS | 30.0% | |
| CTACTCCTATTAGAATTTCA+AGG | - | Chr3:87983748-87983767 | MsG0380016793.01.T01:CDS | 30.0% | |
| CTCTTGATTCTATGATTATG+TGG | + | Chr3:87982550-87982569 | None:intergenic | 30.0% | |
| GAAATTCTAATAGGAGTAGA+CGG | + | Chr3:87983747-87983766 | None:intergenic | 30.0% | |
| TCATCACCTATCTATAGTTT+GGG | - | Chr3:87983615-87983634 | MsG0380016793.01.T01:intron | 30.0% | |
| TTTACAAAAGATCGAACCTT+TGG | + | Chr3:87982788-87982807 | None:intergenic | 30.0% | |
| TTTCGTCACTAAAATTCGTA+GGG | - | Chr3:87984116-87984135 | MsG0380016793.01.T01:CDS | 30.0% | |
| ! | GCTTCTTGTTTAGTAGTAAA+TGG | + | Chr3:87983114-87983133 | None:intergenic | 30.0% |
| ! | TCTGCATAGATGTTTTCTAT+TGG | - | Chr3:87983922-87983941 | MsG0380016793.01.T01:CDS | 30.0% |
| !! | AATTGTGGTTGATGTTGTTT+TGG | - | Chr3:87982739-87982758 | MsG0380016793.01.T01:intron | 30.0% |
| !! | GATGAGTCTAAAAAGTATTC+TGG | - | Chr3:87983949-87983968 | MsG0380016793.01.T01:CDS | 30.0% |
| AAAGACATTTCACTTGGATG+AGG | + | Chr3:87983519-87983538 | None:intergenic | 35.0% | |
| AATGACCCCAAACTATAGAT+AGG | + | Chr3:87983624-87983643 | None:intergenic | 35.0% | |
| AGATTGAACCATTTGTCTCT+GGG | + | Chr3:87982653-87982672 | None:intergenic | 35.0% | |
| CAATAATCTTCAGCCAATTG+TGG | - | Chr3:87982724-87982743 | MsG0380016793.01.T01:intron | 35.0% | |
| CAATTGGCTGAAGATTATTG+TGG | + | Chr3:87982724-87982743 | None:intergenic | 35.0% | |
| CATCACCTATCTATAGTTTG+GGG | - | Chr3:87983616-87983635 | MsG0380016793.01.T01:intron | 35.0% | |
| GAACTCACATCAGAAACATA+CGG | + | Chr3:87983210-87983229 | None:intergenic | 35.0% | |
| GAAGATGAAGAAGTTGAAGA+TGG | + | Chr3:87982614-87982633 | None:intergenic | 35.0% | |
| GAATTAGCAACTTCAGCATT+AGG | + | Chr3:87983693-87983712 | None:intergenic | 35.0% | |
| GTGCACCTTGAAATTCTAAT+AGG | + | Chr3:87983756-87983775 | None:intergenic | 35.0% | |
| TAGATTGAACCATTTGTCTC+TGG | + | Chr3:87982654-87982673 | None:intergenic | 35.0% | |
| TGAAGCAAAGACATTTCACT+TGG | + | Chr3:87983525-87983544 | None:intergenic | 35.0% | |
| TTCGTCACTAAAATTCGTAG+GGG | - | Chr3:87984117-87984136 | MsG0380016793.01.T01:CDS | 35.0% | |
| ! | AGAAACCCCTTTGAAGAATT+AGG | - | Chr3:87982812-87982831 | MsG0380016793.01.T01:intron | 35.0% |
| ! | GAACCTTTGGAGAGAAATTA+AGG | + | Chr3:87982775-87982794 | None:intergenic | 35.0% |
| ! | GTATGTTTCTGATGTGAGTT+CGG | - | Chr3:87983209-87983228 | MsG0380016793.01.T01:CDS | 35.0% |
| ! | GTTATAACTTGTGGAGACAA+AGG | + | Chr3:87983246-87983265 | None:intergenic | 35.0% |
| ! | TAGATAGGTGATGATGAAGA+AGG | + | Chr3:87983609-87983628 | None:intergenic | 35.0% |
| ACACTGCAAACACTACAAGA+AGG | - | Chr3:87982921-87982940 | MsG0380016793.01.T01:CDS | 40.0% | |
| ACATTCGGAATCACACACAT+TGG | - | Chr3:87983446-87983465 | MsG0380016793.01.T01:CDS | 40.0% | |
| ACTCCTGTGGATACTAATTC+TGG | - | Chr3:87983156-87983175 | MsG0380016793.01.T01:CDS | 40.0% | |
| ATCATGCATTATGCCTGAGA+AGG | - | Chr3:87983809-87983828 | MsG0380016793.01.T01:CDS | 40.0% | |
| ATGATGCAACATACCTTCTC+AGG | + | Chr3:87983825-87983844 | None:intergenic | 40.0% | |
| ATTCTAACAACAGGAAGCGA+CGG | + | Chr3:87983312-87983331 | None:intergenic | 40.0% | |
| ATTCTAATAGGAGTAGACGG+CGG | + | Chr3:87983744-87983763 | None:intergenic | 40.0% | |
| CAACTATGTCTCCTCGAAAA+TGG | + | Chr3:87983366-87983385 | None:intergenic | 40.0% | |
| CACCTCCTAATTCTTCAAAG+GGG | + | Chr3:87982820-87982839 | None:intergenic | 40.0% | |
| CCACCTCCTAATTCTTCAAA+GGG | + | Chr3:87982821-87982840 | None:intergenic | 40.0% | |
| CTACCAGAATTAGTATCCAC+AGG | + | Chr3:87983162-87983181 | None:intergenic | 40.0% | |
| CTCCTGGAAAATGAAATCTG+TGG | + | Chr3:87984000-87984019 | None:intergenic | 40.0% | |
| CTGTGGATACTAATTCTGGT+AGG | - | Chr3:87983160-87983179 | MsG0380016793.01.T01:CDS | 40.0% | |
| GTTGTTAGAATGCCATCACA+TGG | - | Chr3:87983321-87983340 | MsG0380016793.01.T01:CDS | 40.0% | |
| TAAGTTTGTGTTCACTCCTG+TGG | - | Chr3:87983143-87983162 | MsG0380016793.01.T01:CDS | 40.0% | |
| TCAGCATTAGGTATGTTGAC+AGG | + | Chr3:87983681-87983700 | None:intergenic | 40.0% | |
| TCTTGTAGTGTTTGCAGTGT+TGG | + | Chr3:87982921-87982940 | None:intergenic | 40.0% | |
| TGTGATGGCATTCTAACAAC+AGG | + | Chr3:87983321-87983340 | None:intergenic | 40.0% | |
| TTCACCTTCACCTACACATT+CGG | - | Chr3:87983431-87983450 | MsG0380016793.01.T01:CDS | 40.0% | |
| TTCTGGTAGGCTGTGTTTAT+CGG | - | Chr3:87983173-87983192 | MsG0380016793.01.T01:CDS | 40.0% | |
| ! | AACCCCTTTGAAGAATTAGG+AGG | - | Chr3:87982815-87982834 | MsG0380016793.01.T01:CDS | 40.0% |
| ! | CACCACAGATTTCATTTTCC+AGG | - | Chr3:87983995-87984014 | MsG0380016793.01.T01:CDS | 40.0% |
| ! | CCTTTGAAGAATTAGGAGGT+GGG | - | Chr3:87982819-87982838 | MsG0380016793.01.T01:CDS | 40.0% |
| ! | GTTTCTAATGCTAGCTCTCA+AGG | - | Chr3:87983468-87983487 | MsG0380016793.01.T01:CDS | 40.0% |
| ! | TTTCACATGTCCTTTTGACG+TGG | - | Chr3:87984059-87984078 | MsG0380016793.01.T01:CDS | 40.0% |
| !! | CATTTTCGAGGAGACATAGT+TGG | - | Chr3:87983364-87983383 | MsG0380016793.01.T01:CDS | 40.0% |
| CACTTGAAAACGCTGACCTA+TGG | - | Chr3:87982696-87982715 | MsG0380016793.01.T01:intron | 45.0% | |
| CCCACCTCCTAATTCTTCAA+AGG | + | Chr3:87982822-87982841 | None:intergenic | 45.0% | |
| CTCATCAACCGATCAGTCAA+AGG | + | Chr3:87983285-87983304 | None:intergenic | 45.0% | |
| CTCGAAAATGGCAATGACGA+CGG | + | Chr3:87983354-87983373 | None:intergenic | 45.0% | |
| GAAGATTATTGTGGCGCCAT+AGG | + | Chr3:87982715-87982734 | None:intergenic | 45.0% | |
| GACATTTCACTTGGATGAGG+AGG | + | Chr3:87983516-87983535 | None:intergenic | 45.0% | |
| GAGGGAGATGGAGAGAAATT+CGG | + | Chr3:87983585-87983604 | None:intergenic | 45.0% | |
| GATTCCGAATGTGTAGGTGA+AGG | + | Chr3:87983438-87983457 | None:intergenic | 45.0% | |
| GTGTGTGATTCCGAATGTGT+AGG | + | Chr3:87983444-87983463 | None:intergenic | 45.0% | |
| TATGCCTACTGCTATGTCCA+GGG | + | Chr3:87983716-87983735 | None:intergenic | 45.0% | |
| TCGGTAGTCCTTTGACTGAT+CGG | - | Chr3:87983274-87983293 | MsG0380016793.01.T01:CDS | 45.0% | |
| TCGTCATCATCCACGTCAAA+AGG | + | Chr3:87984072-87984091 | None:intergenic | 45.0% | |
| TGCTGTAGGACATTCTCTGA+GGG | + | Chr3:87982678-87982697 | None:intergenic | 45.0% | |
| TGTGGAGACAAAGGAGTTGT+TGG | + | Chr3:87983237-87983256 | None:intergenic | 45.0% | |
| TTATGCCTACTGCTATGTCC+AGG | + | Chr3:87983717-87983736 | None:intergenic | 45.0% | |
| ! | AGATGGAGAGAAATTCGGTG+AGG | + | Chr3:87983580-87983599 | None:intergenic | 45.0% |
| ! | AGGTGATGATGAAGAAGGAG+AGG | + | Chr3:87983604-87983623 | None:intergenic | 45.0% |
| ! | CCCTTTGAAGAATTAGGAGG+TGG | - | Chr3:87982818-87982837 | MsG0380016793.01.T01:CDS | 45.0% |
| ! | CGTGGATGATGACGATACAA+CGG | - | Chr3:87984077-87984096 | MsG0380016793.01.T01:CDS | 45.0% |
| ! | CTTTGACTGATCGGTTGATG+AGG | - | Chr3:87983283-87983302 | MsG0380016793.01.T01:CDS | 45.0% |
| ! | GATGGAGAGAAATTCGGTGA+GGG | + | Chr3:87983579-87983598 | None:intergenic | 45.0% |
| ! | GGTGATGATGAAGAAGGAGA+GGG | + | Chr3:87983603-87983622 | None:intergenic | 45.0% |
| ! | TTCAAGGTGCACTTCTGAGA+CGG | - | Chr3:87983764-87983783 | MsG0380016793.01.T01:CDS | 45.0% |
| !!! | TCAGCGTTTTCAAGTGCTGT+AGG | + | Chr3:87982692-87982711 | None:intergenic | 45.0% |
| ATAAGACCTGCTAGAGCTCC+TGG | + | Chr3:87984016-87984035 | None:intergenic | 50.0% | |
| ATGCCTACTGCTATGTCCAG+GGG | + | Chr3:87983715-87983734 | None:intergenic | 50.0% | |
| ATTCCCCTGGACATAGCAGT+AGG | - | Chr3:87983709-87983728 | MsG0380016793.01.T01:CDS | 50.0% | |
| GATGAAGAAGGAGAGGGAGA+TGG | + | Chr3:87983597-87983616 | None:intergenic | 50.0% | |
| GATGACGATACAACGGATCC+AGG | - | Chr3:87984084-87984103 | MsG0380016793.01.T01:CDS | 50.0% | |
| GCTGAAGTTGCTAATTCCCC+TGG | - | Chr3:87983696-87983715 | MsG0380016793.01.T01:intron | 50.0% | |
| GGATGAGGAGGCAAACTAGA+GGG | + | Chr3:87983504-87983523 | None:intergenic | 50.0% | |
| GTGCTGTAGGACATTCTCTG+AGG | + | Chr3:87982679-87982698 | None:intergenic | 50.0% | |
| GTGTTCGACCCAGAGACAAA+TGG | - | Chr3:87982642-87982661 | MsG0380016793.01.T01:CDS | 50.0% | |
| TCTGGGTCGAACACTTGATG+AGG | + | Chr3:87982636-87982655 | None:intergenic | 50.0% | |
| TGCTTCAGTTTGAGCGTGTG+AGG | + | Chr3:87982483-87982502 | None:intergenic | 50.0% | |
| TGGATGAGGAGGCAAACTAG+AGG | + | Chr3:87983505-87983524 | None:intergenic | 50.0% | |
| ! | GAGCTCTAGCAGGTCTTATC+AGG | - | Chr3:87984017-87984036 | MsG0380016793.01.T01:CDS | 50.0% |
| !! | CATTTTCCAGGAGCTCTAGC+AGG | - | Chr3:87984007-87984026 | MsG0380016793.01.T01:CDS | 50.0% |
| !! | CTTCTGAGACGGAGAGAAGT+AGG | - | Chr3:87983775-87983794 | MsG0380016793.01.T01:CDS | 50.0% |
| !!! | CGTCGTCATTGCCATTTTCG+AGG | - | Chr3:87983352-87983371 | MsG0380016793.01.T01:CDS | 50.0% |
| ATACAACGGATCCAGGCAGC+AGG | - | Chr3:87984091-87984110 | MsG0380016793.01.T01:CDS | 55.0% | |
| GACGGAGAAGAGCCATGTGA+TGG | + | Chr3:87983336-87983355 | None:intergenic | 55.0% | |
| GTGACGAAATACCTGCTGCC+TGG | + | Chr3:87984105-87984124 | None:intergenic | 55.0% | |
| TGAGGAGGCAAACTAGAGGG+TGG | + | Chr3:87983501-87983520 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 87982467 | 87984176 | 87982467 | ID=MsG0380016793.01;Name=MsG0380016793.01 |
| Chr3 | mRNA | 87982467 | 87984176 | 87982467 | ID=MsG0380016793.01.T01;Parent=MsG0380016793.01;Name=MsG0380016793.01.T01;_AED=0.44;_eAED=0.46;_QI=0|0.5|0|1|1|1|3|0|511 |
| Chr3 | exon | 87983701 | 87984176 | 87983701 | ID=MsG0380016793.01.T01:exon:22411;Parent=MsG0380016793.01.T01 |
| Chr3 | exon | 87982813 | 87983626 | 87982813 | ID=MsG0380016793.01.T01:exon:22410;Parent=MsG0380016793.01.T01 |
| Chr3 | exon | 87982467 | 87982712 | 87982467 | ID=MsG0380016793.01.T01:exon:22409;Parent=MsG0380016793.01.T01 |
| Chr3 | CDS | 87983701 | 87984176 | 87983701 | ID=MsG0380016793.01.T01:cds;Parent=MsG0380016793.01.T01 |
| Chr3 | CDS | 87982813 | 87983626 | 87982813 | ID=MsG0380016793.01.T01:cds;Parent=MsG0380016793.01.T01 |
| Chr3 | CDS | 87982467 | 87982712 | 87982467 | ID=MsG0380016793.01.T01:cds;Parent=MsG0380016793.01.T01 |
| Gene Sequence |
| Protein sequence |
