AlfalfaGEDB | MsG0380016954.01

M. sativa cultivar ZhongmuNo.1 / MsG0380016954.01

KEGG: -
GO: -
PFAM: PF14968

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016954.01.T01	XP_039687676.1	92.202	436	28	2	1	433	1	433	0	832

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016954.01.T01	F4JRR5	47.059	425	195	10	22	432	6	414	2.21E-116	361

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016954.01.T01	G7J3W4	92.202	436	28	2	1	433	1	433	0.0	832

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0380016954.01	MsG0480019294.01	0.831485	1.625682e-55	1.766640e-52

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016954.01.T01	MTR_3g099220	92.202	436	28	2	1	433	1	433	0.0	832
MsG0380016954.01.T01	MTR_2g045240	91.743	436	30	2	1	433	1	433	0.0	828
MsG0380016954.01.T01	MTR_2g045245	91.743	436	30	2	1	433	1	433	0.0	828
MsG0380016954.01.T01	MTR_3g099200	98.867	353	4	0	434	786	17	369	0.0	731
MsG0380016954.01.T01	MTR_3g099200	99.689	322	1	0	465	786	1	322	0.0	671
MsG0380016954.01.T01	MTR_4g102890	74.438	356	65	6	436	782	15	353	0.0	525
MsG0380016954.01.T01	MTR_4g102890	76.087	322	54	5	467	782	1	305	1.53e-169	491
MsG0380016954.01.T01	MTR_4g104060	71.429	350	75	6	436	777	12	344	1.50e-166	485
MsG0380016954.01.T01	MTR_4g104060	71.470	347	74	6	439	777	1	330	2.86e-165	481
MsG0380016954.01.T01	MTR_4g102890	76.307	287	45	5	502	782	1	270	1.05e-148	436

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016954.01.T01	AT4G24900	47.156	422	196	9	22	432	6	411	6.07e-119	365
MsG0380016954.01.T01	AT4G24900	47.059	425	195	10	22	432	6	414	2.25e-117	361
MsG0380016954.01.T01	AT2G23520	29.208	202	126	5	583	772	182	378	4.65e-17	86.7
MsG0380016954.01.T01	AT5G66950	32.787	183	102	7	604	772	201	376	6.05e-17	86.3
MsG0380016954.01.T01	AT5G51920	27.126	247	147	9	554	782	128	359	4.10e-16	82.8
MsG0380016954.01.T01	AT4G37100	28.922	204	124	7	583	772	186	382	5.61e-16	83.2
MsG0380016954.01.T01	AT4G22980	30.055	183	113	5	602	774	153	330	2.97e-14	77.0

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Find 200 sgRNAs with CRISPR-Local

Find 484 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGCAGCGGCTCTAAGT+TGG	0.503334	3:+89941755	MsG0380016954.01.T01:five_prime_UTR
AAAAGAATCCTTTGATAATG+AGG	0.462400	3:+89942183	MsG0380016954.01.T01:exon
AAAAGAGGGGAGAGATTGTG+AGG	0.596176	3:+89944256	MsG0380016954.01.T01:CDS
AAAAGGCAAGTGATTCTTGA+AGG	0.453246	3:-89948156	None:intergenic
AAAAGGGAAAGTCACCAAGA+GGG	0.676816	3:+89947494	MsG0380016954.01.T01:CDS
AAACACACCAGAAGCGATTA+CGG	0.390716	3:-89942445	None:intergenic
AAAGAATCCTTTGATAATGA+GGG	0.541061	3:+89942184	MsG0380016954.01.T01:exon
AAAGGCAAAACAACATTTGA+AGG	0.492186	3:-89943006	None:intergenic
AAAGTGGTCAGCGGAGAGAG+CGG	0.667269	3:+89943723	MsG0380016954.01.T01:CDS
AACAAGAAATCCTCATTTAC+TGG	0.292904	3:+89947622	MsG0380016954.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGCAAAACAACATTTGA+AGG	-	Chr3:89943009-89943028	None:intergenic	30.0%
AAATGACATTTCCAATAGAC+AGG	-	Chr3:89943185-89943204	None:intergenic	30.0%
AACAAGAAATCCTCATTTAC+TGG	+	Chr3:89947622-89947641	MsG0380016954.01.T01:CDS	30.0%
AATAACTCCAAACGAATATC+TGG	+	Chr3:89946489-89946508	MsG0380016954.01.T01:intron	30.0%
AATGACATTTCCAATAGACA+GGG	-	Chr3:89943184-89943203	None:intergenic	30.0%
AGAAAGTTACCCTTTCATTA+AGG	+	Chr3:89947768-89947787	MsG0380016954.01.T01:CDS	30.0%
AGTAGTTTCCCTTAATGAAA+GGG	-	Chr3:89947780-89947799	None:intergenic	30.0%
AGTCTCAAATTTGAAAAGGA+TGG	-	Chr3:89942050-89942069	None:intergenic	30.0%
AGTTAAGTCAAAACTTTAGG+AGG	+	Chr3:89947914-89947933	MsG0380016954.01.T01:CDS	30.0%
ATATAGCAGGTTCTTGATAA+TGG	+	Chr3:89943699-89943718	MsG0380016954.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	89941484	89948233	89941484	ID=MsG0380016954.01;Name=MsG0380016954.01
Chr3	mRNA	89941484	89948233	89941484	ID=MsG0380016954.01.T01;Parent=MsG0380016954.01;Name=MsG0380016954.01.T01;_AED=0.47;_eAED=0.47;_QI=343\|0.62\|0.66\|1\|0.87\|0.77\|9\|0\|786
Chr3	exon	89941484	89941800	89941484	ID=MsG0380016954.01.T01:exon:3315;Parent=MsG0380016954.01.T01
Chr3	exon	89942174	89942510	89942174	ID=MsG0380016954.01.T01:exon:3316;Parent=MsG0380016954.01.T01
Chr3	exon	89942599	89942725	89942599	ID=MsG0380016954.01.T01:exon:3317;Parent=MsG0380016954.01.T01
Chr3	exon	89942844	89943171	89942844	ID=MsG0380016954.01.T01:exon:3318;Parent=MsG0380016954.01.T01
Chr3	exon	89943290	89943363	89943290	ID=MsG0380016954.01.T01:exon:3319;Parent=MsG0380016954.01.T01
Chr3	exon	89943708	89943744	89943708	ID=MsG0380016954.01.T01:exon:3320;Parent=MsG0380016954.01.T01
Chr3	exon	89944022	89944443	89944022	ID=MsG0380016954.01.T01:exon:3321;Parent=MsG0380016954.01.T01
Chr3	exon	89947070	89947174	89947070	ID=MsG0380016954.01.T01:exon:3322;Parent=MsG0380016954.01.T01
Chr3	exon	89947277	89948233	89947277	ID=MsG0380016954.01.T01:exon:3323;Parent=MsG0380016954.01.T01
Chr3	five_prime_UTR	89941484	89941800	89941484	ID=MsG0380016954.01.T01:five_prime_utr;Parent=MsG0380016954.01.T01
Chr3	five_prime_UTR	89942174	89942199	89942174	ID=MsG0380016954.01.T01:five_prime_utr;Parent=MsG0380016954.01.T01
Chr3	CDS	89942200	89942510	89942200	ID=MsG0380016954.01.T01:cds;Parent=MsG0380016954.01.T01
Chr3	CDS	89942599	89942725	89942599	ID=MsG0380016954.01.T01:cds;Parent=MsG0380016954.01.T01
Chr3	CDS	89942844	89943171	89942844	ID=MsG0380016954.01.T01:cds;Parent=MsG0380016954.01.T01
Chr3	CDS	89943290	89943363	89943290	ID=MsG0380016954.01.T01:cds;Parent=MsG0380016954.01.T01
Chr3	CDS	89943708	89943744	89943708	ID=MsG0380016954.01.T01:cds;Parent=MsG0380016954.01.T01
Chr3	CDS	89944022	89944443	89944022	ID=MsG0380016954.01.T01:cds;Parent=MsG0380016954.01.T01
Chr3	CDS	89947070	89947174	89947070	ID=MsG0380016954.01.T01:cds;Parent=MsG0380016954.01.T01
Chr3	CDS	89947277	89948233	89947277	ID=MsG0380016954.01.T01:cds;Parent=MsG0380016954.01.T01

Gene Sequence

>MsG0380016954.01.T01

ATGAGGGACCGATCTGAGAGCAAGAGCCGGAGTTCCAAGCCTAAAGCAAGCACAAGGGAGAAGAAGAAAAGCGAGTTTGAGTTCTGTAAGGTCTGCAAAATAAATCACGACCAAGGTCTTCGCCACAAATATTTTCCTAAGCACAAACAATCCCTTTCCACCTTTCTCTCTCGCGTCAAAAACAAACTCTCCGATGTTCGCTTCTTCCTCAAAACACCTTCCCCTCTTACTCCTCAACTTGATTCCCGTAATCGCTTCTGGTGTGTTTTCTGTGACCAAGATATTGATGAGCTCTCCAGTTCTTTTGCCTGTGAAAATGCGATTCGTCACCTAGCAAGTGTACAACATGTGAATAAGTTGAAGCACTTCTTTTGGAAATATGGTGGCACAGTGGATCAGCTGGATGTGTTTACAGTTTCTGATAATGACGTTGCAAAGTGGGACAAGAGGTGCACGACCCTTAAAAAAGAAGCTTCATTGCAAAATGAGGAAAGTCCTGGAGCAGTTTTTGGACCTTCAAGTGATATCCATAATCAATCGAACAATGAAAATATTGATAGTTTTGAAAATAATATTTATTCCAATTCTGTGAACTCGTATCCTTCAAATGTTGTTTTGCCTTTACACTGCCACACGAATGAGTATCAGGTATCCTCTTCAGGACACTCTGGAGTTGGAAATACTGGCCTTTTAGATATTGGTAAATCTTCTTTACCTTCGGAAGCGTGCTCCAGTGTGAATACCCTTGCTTTGCAGGATTTTGCAGCTGAATGGAGAAGCCACAAACTCCCTTATAATGGTGGACAATGGTCAAGCGATGGATACTCATGTAATAAAGCGGTTCTTGATAATGGTAAAGTGGTCAGCGGAGAGAGCGGTATACAAATGCTCACCCGTATTTCTTTTGTGCCTGCTGAAAATGGTGGTGGAAACGTTCATTCTGGAGCACCTCCGCCTTGGTTTGAAACAACTGAGGGAGTTCAGATGCACCCGATGCCTGTTTTAGGAGACCTTGTCTCCCATTCAAACAAGTCAGGGAAGAACAAAAAGTTGAATCCTAAACGCGTTGGAGCTTCTTGGGCAGAAAAGAGAAAGATTGAAATGGAGATGGAAAAGAGGGGAGAGATTGTGAGGAAAGAATGTGATGCCAACTGGCTTCCTAATTTTGGTAGAGTCTGGCAATCTGGTAGCAGAAGAGAATCCAGAAAAGAATTTGAAAAGGAGAAACAAGAGTTGTCAAATGTTGAAGCTCAACCTGAGATGCCAATCAAGATACAACCTTATATTAGCAAAAGAATGGTAACATATCCGGAGGTTGTAGAAAATGAAGTCAAGGACATTAAGAAAGGTGCAGCACATAAAATAATTGCAGAAAGTTGCAAATCAAACAGCATGGTCTTAAAGAAAGGACATGCAATGATTCCAGCTCACATCATAGCTGAAGCGATATCAACTATCCGCGAATTCGATATTAGATGGTCAGGTCCAATCACACCAAAAGAAATGGAATATGTTGAACAGTATGTGCTAGCAAAGTATCCAGAATATTCAAGGTTGATTGAAGGAGATGGAAATGGGATAGACATGTCTACCTTTATCATCAATGAAGAACCTTTAGATGAAAAGGGAAAGTCACCAAGAGGGACTCCTAGTCCTAGAGATTCTTCTTCATATACATTTGGTAGTAGTCTACCTGAATCTGACAGGGCCAAGATTCAATTGGAGCAATCAAGGTTACTTGATATTCTCAACAAGAAATCCTCATTTACTGGAAGTTTCATATCGATCCCGGAAATTCAAGCTCAAAATAAGGTTTTGAAGCATTACGGTTTGACAGATGATGAATACCTTGTTCTCTTCACTCCAGGCTACAAGGATGCTATGATGTTGGTAGGAGAAAGTTACCCTTTCATTAAGGGAAACTACTACATGACCATTCTTGATCAAGAAGAAGATTTTATAAAGGAATTTGCTTGTTTTAAGGAGTCAAAGGTTATCCCTGCACCAAAGACTTGGTTGGACTTGAGGATTAAAGGGTCTCAGTTAAGTCAAAACTTTAGGAGGAGGTGTAAGATCAGTCCAAAAGGCTTATTCTCTTATCCAGCAGATGCTAGTGGAACAATGCATTGGATCTCAGAAGCTCACAGGAACAATTGGCATGTGCTGCTTGATGCCTCTGCTTATGTAGTTGGAAAGGATCGGCTACATCTCGCGCTTCACCGCCCTGATTTTGTGATCTGTAGTCTTGATAACAACACTCATTCCAGTAACACTAATTCCAATCCTTCAAGAATCACTTGCCTTTTAGTCAGAAAGGAATCCTTTGACACATCAGCTGCTTCATCTCAGGTAGTTGAATGA

Protein sequence

>MsG0380016954.01.T01

MRDRSESKSRSSKPKASTREKKKSEFEFCKVCKINHDQGLRHKYFPKHKQSLSTFLSRVKNKLSDVRFFLKTPSPLTPQLDSRNRFWCVFCDQDIDELSSSFACENAIRHLASVQHVNKLKHFFWKYGGTVDQLDVFTVSDNDVAKWDKRCTTLKKEASLQNEESPGAVFGPSSDIHNQSNNENIDSFENNIYSNSVNSYPSNVVLPLHCHTNEYQVSSSGHSGVGNTGLLDIGKSSLPSEACSSVNTLALQDFAAEWRSHKLPYNGGQWSSDGYSCNKAVLDNGKVVSGESGIQMLTRISFVPAENGGGNVHSGAPPPWFETTEGVQMHPMPVLGDLVSHSNKSGKNKKLNPKRVGASWAEKRKIEMEMEKRGEIVRKECDANWLPNFGRVWQSGSRRESRKEFEKEKQELSNVEAQPEMPIKIQPYISKRMVTYPEVVENEVKDIKKGAAHKIIAESCKSNSMVLKKGHAMIPAHIIAEAISTIREFDIRWSGPITPKEMEYVEQYVLAKYPEYSRLIEGDGNGIDMSTFIINEEPLDEKGKSPRGTPSPRDSSSYTFGSSLPESDRAKIQLEQSRLLDILNKKSSFTGSFISIPEIQAQNKVLKHYGLTDDEYLVLFTPGYKDAMMLVGESYPFIKGNYYMTILDQEEDFIKEFACFKESKVIPAPKTWLDLRIKGSQLSQNFRRRCKISPKGLFSYPADASGTMHWISEAHRNNWHVLLDASAYVVGKDRLHLALHRPDFVICSLDNNTHSSNTNSNPSRITCLLVRKESFDTSAASSQVVE*