Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016966.01.T01 | XP_003602791.2 | 91.901 | 284 | 18 | 2 | 34 | 317 | 24 | 302 | 9.04E-113 | 339 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016966.01.T01 | Q9C5D3 | 68.902 | 164 | 50 | 1 | 45 | 207 | 74 | 237 | 1.90E-60 | 199 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016966.01.T01 | G7J3E1 | 91.901 | 284 | 18 | 2 | 34 | 317 | 24 | 302 | 4.32e-113 | 339 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0380016966.01 | MsG0580026047.01 | 0.814785 | 1.290841e-51 | 8.742718e-49 |
| MsG0280008417.01 | MsG0380016966.01 | 0.806097 | 9.703243e-50 | 5.221092e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016966.01.T01 | MTR_3g099040 | 91.901 | 284 | 18 | 2 | 34 | 317 | 24 | 302 | 1.10e-116 | 339 |
| MsG0380016966.01.T01 | MTR_3g099030 | 68.070 | 285 | 50 | 4 | 33 | 317 | 23 | 266 | 1.86e-97 | 288 |
| MsG0380016966.01.T01 | MTR_8g096700 | 55.326 | 291 | 95 | 8 | 43 | 317 | 50 | 321 | 2.23e-79 | 244 |
| MsG0380016966.01.T01 | MTR_4g006650 | 87.413 | 143 | 14 | 1 | 34 | 176 | 157 | 295 | 2.21e-60 | 196 |
| MsG0380016966.01.T01 | MTR_2g026685 | 47.101 | 276 | 107 | 5 | 43 | 317 | 32 | 269 | 1.86e-50 | 168 |
| MsG0380016966.01.T01 | MTR_2g026685 | 47.101 | 276 | 107 | 5 | 43 | 317 | 33 | 270 | 1.91e-50 | 168 |
| MsG0380016966.01.T01 | MTR_2g026685 | 47.566 | 267 | 101 | 5 | 52 | 317 | 1 | 229 | 8.12e-48 | 160 |
| MsG0380016966.01.T01 | MTR_3g093020 | 35.161 | 310 | 164 | 7 | 15 | 316 | 3 | 283 | 1.41e-37 | 135 |
| MsG0380016966.01.T01 | MTR_3g435930 | 32.967 | 273 | 119 | 8 | 46 | 317 | 28 | 237 | 3.41e-32 | 120 |
| MsG0380016966.01.T01 | MTR_5g069180 | 37.654 | 162 | 88 | 3 | 47 | 206 | 56 | 206 | 7.30e-28 | 110 |
| MsG0380016966.01.T01 | MTR_4g057765 | 30.070 | 286 | 155 | 8 | 47 | 317 | 69 | 324 | 6.32e-27 | 108 |
| MsG0380016966.01.T01 | MTR_1g063210 | 31.609 | 348 | 171 | 9 | 20 | 317 | 3 | 333 | 1.28e-25 | 104 |
| MsG0380016966.01.T01 | MTR_2g095480 | 35.032 | 157 | 100 | 1 | 43 | 199 | 64 | 218 | 5.98e-25 | 103 |
| MsG0380016966.01.T01 | MTR_7g101930 | 27.647 | 340 | 173 | 8 | 46 | 317 | 15 | 349 | 1.08e-20 | 91.3 |
| MsG0380016966.01.T01 | MTR_0041s0140 | 31.156 | 199 | 106 | 5 | 46 | 220 | 15 | 206 | 1.18e-15 | 75.9 |
| MsG0380016966.01.T01 | MTR_8g018747 | 46.774 | 62 | 33 | 0 | 145 | 206 | 23 | 84 | 1.93e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016966.01.T01 | AT5G50740 | 46.739 | 276 | 122 | 4 | 46 | 317 | 29 | 283 | 4.19e-71 | 222 |
| MsG0380016966.01.T01 | AT5G50740 | 46.739 | 276 | 122 | 4 | 46 | 317 | 29 | 283 | 4.19e-71 | 222 |
| MsG0380016966.01.T01 | AT5G50740 | 46.739 | 276 | 122 | 4 | 46 | 317 | 36 | 290 | 7.92e-71 | 221 |
| MsG0380016966.01.T01 | AT5G63530 | 68.902 | 164 | 50 | 1 | 45 | 207 | 59 | 222 | 1.15e-61 | 199 |
| MsG0380016966.01.T01 | AT5G63530 | 68.902 | 164 | 50 | 1 | 45 | 207 | 74 | 237 | 1.94e-61 | 199 |
| MsG0380016966.01.T01 | AT5G50740 | 58.197 | 122 | 51 | 0 | 46 | 167 | 29 | 150 | 1.03e-42 | 145 |
| MsG0380016966.01.T01 | AT5G50740 | 58.197 | 122 | 51 | 0 | 46 | 167 | 36 | 157 | 1.93e-42 | 144 |
| MsG0380016966.01.T01 | AT3G02960 | 32.177 | 317 | 144 | 8 | 1 | 317 | 1 | 246 | 3.37e-42 | 146 |
| MsG0380016966.01.T01 | AT5G24580 | 30.847 | 295 | 146 | 6 | 46 | 316 | 57 | 317 | 1.98e-33 | 125 |
| MsG0380016966.01.T01 | AT5G24580 | 30.847 | 295 | 146 | 6 | 46 | 316 | 58 | 318 | 2.46e-33 | 125 |
| MsG0380016966.01.T01 | AT5G24580 | 30.847 | 295 | 146 | 6 | 46 | 316 | 58 | 318 | 2.46e-33 | 125 |
| MsG0380016966.01.T01 | AT5G24580 | 29.831 | 295 | 146 | 7 | 46 | 316 | 58 | 315 | 6.74e-30 | 116 |
| MsG0380016966.01.T01 | AT2G36950 | 32.840 | 338 | 158 | 12 | 46 | 317 | 52 | 386 | 7.90e-28 | 111 |
| MsG0380016966.01.T01 | AT5G03380 | 27.778 | 396 | 182 | 12 | 20 | 317 | 3 | 392 | 9.09e-25 | 103 |
| MsG0380016966.01.T01 | AT5G24580 | 29.545 | 264 | 128 | 6 | 77 | 316 | 2 | 231 | 1.19e-23 | 97.4 |
| MsG0380016966.01.T01 | AT5G03380 | 27.717 | 368 | 165 | 11 | 48 | 317 | 1 | 365 | 2.41e-23 | 99.0 |
| MsG0380016966.01.T01 | AT1G29000 | 33.750 | 160 | 103 | 2 | 49 | 206 | 20 | 178 | 1.33e-21 | 92.8 |
| MsG0380016966.01.T01 | AT1G29000 | 33.750 | 160 | 103 | 2 | 49 | 206 | 20 | 178 | 1.33e-21 | 92.8 |
| MsG0380016966.01.T01 | AT5G60800 | 29.310 | 174 | 110 | 3 | 42 | 204 | 24 | 195 | 1.40e-13 | 70.5 |
| MsG0380016966.01.T01 | AT5G60800 | 29.310 | 174 | 110 | 3 | 42 | 204 | 24 | 195 | 2.21e-13 | 70.1 |
Find 82 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAATGCATGTGAACTTTA+AGG | 0.123803 | 3:-90105207 | None:intergenic |
| TATGCAGGATATCCAATTTC+TGG | 0.228734 | 3:-90106262 | None:intergenic |
| AGCAGAGCCATTGAAGGTTT+TGG | 0.240236 | 3:+90104934 | MsG0380016966.01.T01:CDS |
| TCTTCTTTCTTCTCCTCTTC+AGG | 0.262478 | 3:-90105055 | None:intergenic |
| TTGTATGCATACCCAGAAAT+TGG | 0.264045 | 3:+90106250 | MsG0380016966.01.T01:CDS |
| CACATGACACTGCACGCATT+TGG | 0.330281 | 3:-90106361 | None:intergenic |
| GAATATGTGTACAAGAGAAT+TGG | 0.337745 | 3:+90106007 | MsG0380016966.01.T01:CDS |
| TTTCTCCTCTTCTTGTGGCT+TGG | 0.353064 | 3:-90106149 | None:intergenic |
| GGCGCCGGTGGCGGTGGTGG+AGG | 0.378419 | 3:-90106316 | None:intergenic |
| GAGTTCAGAAGAAGAGTCAT+AGG | 0.384792 | 3:+90104960 | MsG0380016966.01.T01:CDS |
| TGTGGCGCCGGTGGCGGTGG+TGG | 0.385547 | 3:-90106319 | None:intergenic |
| ACATGACACTGCACGCATTT+GGG | 0.396441 | 3:-90106360 | None:intergenic |
| ACATATTCAACCAGCATTGT+TGG | 0.400300 | 3:-90105992 | None:intergenic |
| AATATGTGTACAAGAGAATT+GGG | 0.410323 | 3:+90106008 | MsG0380016966.01.T01:CDS |
| ATTTGTGGCGCCGGTGGCGG+TGG | 0.411514 | 3:-90106322 | None:intergenic |
| TTGACTCGCAGGAGTGGAAT+TGG | 0.430688 | 3:+90105919 | MsG0380016966.01.T01:intron |
| AACACCTGGAAAATCTTTCA+AGG | 0.431319 | 3:-90104858 | None:intergenic |
| ATCTCTGCCGGAGGCGGTGG+AGG | 0.439963 | 3:-90104782 | None:intergenic |
| GCGCCGGTGGCGGTGGTGGA+GGG | 0.441430 | 3:-90106315 | None:intergenic |
| TTTCCTCCTCAGGAGCAGTT+GGG | 0.442294 | 3:-90105006 | None:intergenic |
| TTCTCATCACTGAACATTTG+TGG | 0.463049 | 3:-90106337 | None:intergenic |
| AACAGATTGCAAATCTCATA+TGG | 0.468470 | 3:+90104892 | MsG0380016966.01.T01:CDS |
| GCTTCTTTCTCCTCTTCTTG+TGG | 0.477080 | 3:-90106154 | None:intergenic |
| GAAGGAAGAGAAAGTGGAGG+AGG | 0.477809 | 3:+90106048 | MsG0380016966.01.T01:CDS |
| AACATTTGTGGCGCCGGTGG+CGG | 0.479452 | 3:-90106325 | None:intergenic |
| ATAATCTCTGCCGGAGGCGG+TGG | 0.484381 | 3:-90104785 | None:intergenic |
| TGAGCATGATAGTAAGCAGC+TGG | 0.486591 | 3:-90106286 | None:intergenic |
| AGCATAATCTCTGCCGGAGG+CGG | 0.487601 | 3:-90104788 | None:intergenic |
| TGATGTTCCTCCACCGCCTC+CGG | 0.487719 | 3:+90104775 | MsG0380016966.01.T01:CDS |
| ACTCTCTCCAAAACCTTCAA+TGG | 0.491679 | 3:-90104941 | None:intergenic |
| AGAGAAAGCAGAGCCATTGA+AGG | 0.492377 | 3:+90104928 | MsG0380016966.01.T01:CDS |
| AGAGGAGAAAGTTGAAGAAG+TGG | 0.492702 | 3:+90106096 | MsG0380016966.01.T01:CDS |
| AGAAGAGACAAATGTGGAAG+AGG | 0.493464 | 3:+90106186 | MsG0380016966.01.T01:CDS |
| TAGTAAGCAGCTGGGTATGC+AGG | 0.497299 | 3:-90106277 | None:intergenic |
| ATGCAGGATATCCAATTTCT+GGG | 0.498068 | 3:-90106261 | None:intergenic |
| GATCATGAAGGAAGAGAAAG+TGG | 0.506766 | 3:+90106042 | MsG0380016966.01.T01:CDS |
| TCTTTCAATACCTCGCCCAT+TGG | 0.512665 | 3:-90104540 | None:intergenic |
| TAAAGAAGAAGGAGAGGGTG+AGG | 0.520661 | 3:+90106126 | MsG0380016966.01.T01:CDS |
| AACTCTGAGGTAAGTGTGAA+GGG | 0.521530 | 3:+90105959 | MsG0380016966.01.T01:CDS |
| TGAGGCCAAGCCACAAGAAG+AGG | 0.523115 | 3:+90106144 | MsG0380016966.01.T01:CDS |
| CTGAACATTTGTGGCGCCGG+TGG | 0.526503 | 3:-90106328 | None:intergenic |
| GTGGCTGAGAATAAAGAAGA+AGG | 0.526744 | 3:+90106115 | MsG0380016966.01.T01:CDS |
| TCCTCAGGAGCAGTTGGGAT+CGG | 0.529318 | 3:-90105001 | None:intergenic |
| ATACCCTCCACCACCGCCAC+CGG | 0.533504 | 3:+90106312 | MsG0380016966.01.T01:CDS |
| TCTCATATGGTGGTTGTGAA+AGG | 0.544258 | 3:+90104905 | MsG0380016966.01.T01:CDS |
| TCCGATCCCAACTGCTCCTG+AGG | 0.547732 | 3:+90105000 | MsG0380016966.01.T01:CDS |
| TGAGAATAAAGAAGAAGGAG+AGG | 0.548774 | 3:+90106120 | MsG0380016966.01.T01:CDS |
| ACTTTCAGCATAATCTCTGC+CGG | 0.558570 | 3:-90104794 | None:intergenic |
| TCACTGAACATTTGTGGCGC+CGG | 0.561801 | 3:-90106331 | None:intergenic |
| TGGGTATGCATACAAATCCA+TGG | 0.565942 | 3:-90106242 | None:intergenic |
| AAAAGTTGCTGAGGAAGAGA+AGG | 0.566341 | 3:+90105027 | MsG0380016966.01.T01:CDS |
| GAACTCTGAGGTAAGTGTGA+AGG | 0.574142 | 3:+90105958 | MsG0380016966.01.T01:CDS |
| CATGCATTGTGAAGCTTGTG+CGG | 0.582190 | 3:+90105219 | MsG0380016966.01.T01:CDS |
| ACTCGCAGGAGTGGAATTGG+TGG | 0.583118 | 3:+90105922 | MsG0380016966.01.T01:intron |
| AGAGAAGGCTGCACCTGAAG+AGG | 0.583611 | 3:+90105042 | MsG0380016966.01.T01:CDS |
| TATGCATACAAATCCATGGA+TGG | 0.594682 | 3:-90106238 | None:intergenic |
| TGCATTGTGAAAGCTGTGCT+CGG | 0.595120 | 3:+90104822 | MsG0380016966.01.T01:CDS |
| ATACTACTATAATCCATCCA+TGG | 0.596587 | 3:+90106225 | MsG0380016966.01.T01:CDS |
| TTAGGAAGAGAAGAAAACAG+AGG | 0.601871 | 3:+90104673 | MsG0380016966.01.T01:intron |
| GAGAATAAAGAAGAAGGAGA+GGG | 0.601967 | 3:+90106121 | MsG0380016966.01.T01:CDS |
| GTTATCACATCTTCAACACC+TGG | 0.604591 | 3:-90104872 | None:intergenic |
| CTCTGAGGTAAGTGTGAAGG+GGG | 0.606360 | 3:+90105961 | MsG0380016966.01.T01:CDS |
| GGAAGAAGAAACCAAGCCAG+AGG | 0.606884 | 3:+90104736 | MsG0380016966.01.T01:CDS |
| GATCCCAACTGCTCCTGAGG+AGG | 0.607543 | 3:+90105003 | MsG0380016966.01.T01:CDS |
| CATGAAGGAAGAGAAAGTGG+AGG | 0.610980 | 3:+90106045 | MsG0380016966.01.T01:CDS |
| AGAGGAAAGTAAGACAGAGG+AGG | 0.613057 | 3:+90104691 | MsG0380016966.01.T01:CDS |
| TCAGAAGAAGAGTCATAGGA+AGG | 0.616480 | 3:+90104964 | MsG0380016966.01.T01:CDS |
| GTAACTAACACCAATGGGCG+AGG | 0.617267 | 3:+90104530 | None:intergenic |
| GGTGTATGATCCAACAATGC+TGG | 0.619988 | 3:+90105982 | MsG0380016966.01.T01:CDS |
| TGAAGAGGAGAAGAAAGAAG+AGG | 0.625518 | 3:+90105057 | MsG0380016966.01.T01:CDS |
| AGGACAACAATCACAATCTG+AGG | 0.626532 | 3:-90105187 | None:intergenic |
| AACAGAGGAAAGTAAGACAG+AGG | 0.628055 | 3:+90104688 | MsG0380016966.01.T01:CDS |
| GGAGGAGGAAGCCAAAGCCG+AGG | 0.633720 | 3:+90106063 | MsG0380016966.01.T01:CDS |
| GAAGCATGCAGTGATCATGA+AGG | 0.653325 | 3:+90106030 | MsG0380016966.01.T01:CDS |
| TACTGTAGAAGAGACAAATG+TGG | 0.655441 | 3:+90106180 | MsG0380016966.01.T01:CDS |
| GCTGTGCTCGGAAAGTTCGT+CGG | 0.656979 | 3:+90104834 | MsG0380016966.01.T01:CDS |
| GAGCATGATAGTAAGCAGCT+GGG | 0.661089 | 3:-90106285 | None:intergenic |
| ACTCTGAGGTAAGTGTGAAG+GGG | 0.663378 | 3:+90105960 | MsG0380016966.01.T01:CDS |
| TTCAGCATAATCTCTGCCGG+AGG | 0.675417 | 3:-90104791 | None:intergenic |
| AGATTGCAAATCTCATATGG+TGG | 0.675547 | 3:+90104895 | MsG0380016966.01.T01:CDS |
| AACTGATCTGAAGAACTCTG+AGG | 0.714880 | 3:+90105946 | MsG0380016966.01.T01:CDS |
| GCATTGTGAAGCTTGTGCGG+AGG | 0.759739 | 3:+90105222 | MsG0380016966.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTAATTTCATTTATCTA+TGG | + | Chr3:90104618-90104637 | MsG0380016966.01.T01:intron | 10.0% |
| !! | ATAAAAGAGAAGTTAAATAT+TGG | - | Chr3:90105285-90105304 | None:intergenic | 15.0% |
| !!! | ATTGTATAATCTTATTTAGT+AGG | + | Chr3:90105836-90105855 | MsG0380016966.01.T01:intron | 15.0% |
| !!! | TCAGTTTTTTTTTTTTACTA+TGG | + | Chr3:90105497-90105516 | MsG0380016966.01.T01:intron | 15.0% |
| !!! | TTGTATAATCTTATTTAGTA+GGG | + | Chr3:90105837-90105856 | MsG0380016966.01.T01:intron | 15.0% |
| !!! | TTTTTTTTTTTTACTATGGT+AGG | + | Chr3:90105501-90105520 | MsG0380016966.01.T01:intron | 15.0% |
| !! | AATTATGTGATTTAATTGAC+CGG | + | Chr3:90105631-90105650 | MsG0380016966.01.T01:intron | 20.0% |
| !! | ACAAATTCAATTGGTTAATT+TGG | + | Chr3:90105371-90105390 | MsG0380016966.01.T01:intron | 20.0% |
| !! | ACTTAACTAACAAATTCAAT+TGG | + | Chr3:90105362-90105381 | MsG0380016966.01.T01:intron | 20.0% |
| !! | ATGGTTAAATCAATTTAATC+CGG | - | Chr3:90105424-90105443 | None:intergenic | 20.0% |
| !! | ATTATTATTGAAATAAGCAG+TGG | + | Chr3:90105874-90105893 | MsG0380016966.01.T01:intron | 20.0% |
| !!! | AACTAATGTTTTAACAAACT+CGG | - | Chr3:90105773-90105792 | None:intergenic | 20.0% |
| !!! | ATTGACTTACAAAGAAAAAA+CGG | - | Chr3:90105458-90105477 | None:intergenic | 20.0% |
| !!! | CTTTTATTTACAAAATCAGA+TGG | + | Chr3:90105298-90105317 | MsG0380016966.01.T01:intron | 20.0% |
| !!! | TGTATAATCTTATTTAGTAG+GGG | + | Chr3:90105838-90105857 | MsG0380016966.01.T01:intron | 20.0% |
| ! | AAACGGATACTAAAAATGAA+TGG | + | Chr3:90105253-90105272 | MsG0380016966.01.T01:CDS | 25.0% |
| ! | AAGAGAAGTTAAATATTGGA+CGG | - | Chr3:90105281-90105300 | None:intergenic | 25.0% |
| ! | AATATGTGTACAAGAGAATT+GGG | + | Chr3:90106008-90106027 | MsG0380016966.01.T01:CDS | 25.0% |
| ! | AATTTGATTCAGCATTCAAT+TGG | - | Chr3:90105811-90105830 | None:intergenic | 25.0% |
| ! | GACTTAGTATAGTAAAAAAC+CGG | - | Chr3:90105690-90105709 | None:intergenic | 25.0% |
| !! | GGATTAAATTGATTTAACCA+TGG | + | Chr3:90105423-90105442 | MsG0380016966.01.T01:intron | 25.0% |
| !! | TAAATTGATTTAACCATGGT+TGG | + | Chr3:90105427-90105446 | MsG0380016966.01.T01:intron | 25.0% |
| AACAGATTGCAAATCTCATA+TGG | + | Chr3:90104892-90104911 | MsG0380016966.01.T01:CDS | 30.0% | |
| ACCAATGTAATTATTACGCA+CGG | + | Chr3:90105559-90105578 | MsG0380016966.01.T01:intron | 30.0% | |
| ACCAATTAAATCATTATGCG+CGG | + | Chr3:90105654-90105673 | MsG0380016966.01.T01:intron | 30.0% | |
| ATACTACTATAATCCATCCA+TGG | + | Chr3:90106225-90106244 | MsG0380016966.01.T01:CDS | 30.0% | |
| GAATATGTGTACAAGAGAAT+TGG | + | Chr3:90106007-90106026 | MsG0380016966.01.T01:CDS | 30.0% | |
| GCATAATGATTTAATTGGTC+CGG | - | Chr3:90105653-90105672 | None:intergenic | 30.0% | |
| TTTGTAAGTCAATTATAGCG+CGG | + | Chr3:90105465-90105484 | MsG0380016966.01.T01:intron | 30.0% | |
| ! | AGAAAAAAAGCATAACTCCA+CGG | - | Chr3:90105158-90105177 | None:intergenic | 30.0% |
| AAAAAACAGAGGAACCGAAA+AGG | + | Chr3:90104714-90104733 | MsG0380016966.01.T01:CDS | 35.0% | |
| AAAAACAGAGGAACCGAAAA+GGG | + | Chr3:90104715-90104734 | MsG0380016966.01.T01:CDS | 35.0% | |
| AACACCTGGAAAATCTTTCA+AGG | - | Chr3:90104861-90104880 | None:intergenic | 35.0% | |
| ACATATTCAACCAGCATTGT+TGG | - | Chr3:90105995-90106014 | None:intergenic | 35.0% | |
| ACCAACTAAATCATTGTGTG+CGG | + | Chr3:90105737-90105756 | MsG0380016966.01.T01:intron | 35.0% | |
| AGATTGCAAATCTCATATGG+TGG | + | Chr3:90104895-90104914 | MsG0380016966.01.T01:CDS | 35.0% | |
| ATACTATCGTTTGACTGAAC+CGG | + | Chr3:90105402-90105421 | MsG0380016966.01.T01:intron | 35.0% | |
| ATGCAGGATATCCAATTTCT+GGG | - | Chr3:90106264-90106283 | None:intergenic | 35.0% | |
| CACAATGCATGTGAACTTTA+AGG | - | Chr3:90105210-90105229 | None:intergenic | 35.0% | |
| GAGAATAAAGAAGAAGGAGA+GGG | + | Chr3:90106121-90106140 | MsG0380016966.01.T01:CDS | 35.0% | |
| TACTGTAGAAGAGACAAATG+TGG | + | Chr3:90106180-90106199 | MsG0380016966.01.T01:CDS | 35.0% | |
| TATGCAGGATATCCAATTTC+TGG | - | Chr3:90106265-90106284 | None:intergenic | 35.0% | |
| TATGCATACAAATCCATGGA+TGG | - | Chr3:90106241-90106260 | None:intergenic | 35.0% | |
| TCCGCGCATAATGATTTAAT+TGG | - | Chr3:90105658-90105677 | None:intergenic | 35.0% | |
| TCCGTGCGTAATAATTACAT+TGG | - | Chr3:90105563-90105582 | None:intergenic | 35.0% | |
| TGAGAATAAAGAAGAAGGAG+AGG | + | Chr3:90106120-90106139 | MsG0380016966.01.T01:CDS | 35.0% | |
| TTAGGAAGAGAAGAAAACAG+AGG | + | Chr3:90104673-90104692 | MsG0380016966.01.T01:intron | 35.0% | |
| TTCTCATCACTGAACATTTG+TGG | - | Chr3:90106340-90106359 | None:intergenic | 35.0% | |
| TTGTATGCATACCCAGAAAT+TGG | + | Chr3:90106250-90106269 | MsG0380016966.01.T01:CDS | 35.0% | |
| ! | TTGGTTTCTTCTTCCCTTTT+CGG | - | Chr3:90104731-90104750 | None:intergenic | 35.0% |
| AAAAGTTGCTGAGGAAGAGA+AGG | + | Chr3:90105027-90105046 | MsG0380016966.01.T01:CDS | 40.0% | |
| AACAGAGGAAAGTAAGACAG+AGG | + | Chr3:90104688-90104707 | MsG0380016966.01.T01:CDS | 40.0% | |
| AACTGATCTGAAGAACTCTG+AGG | + | Chr3:90105946-90105965 | MsG0380016966.01.T01:CDS | 40.0% | |
| ACTCTCTCCAAAACCTTCAA+TGG | - | Chr3:90104944-90104963 | None:intergenic | 40.0% | |
| ACTTTCAGCATAATCTCTGC+CGG | - | Chr3:90104797-90104816 | None:intergenic | 40.0% | |
| AGAAGAGACAAATGTGGAAG+AGG | + | Chr3:90106186-90106205 | MsG0380016966.01.T01:CDS | 40.0% | |
| AGAGGAGAAAGTTGAAGAAG+TGG | + | Chr3:90106096-90106115 | MsG0380016966.01.T01:CDS | 40.0% | |
| AGGACAACAATCACAATCTG+AGG | - | Chr3:90105190-90105209 | None:intergenic | 40.0% | |
| GAGTTCAGAAGAAGAGTCAT+AGG | + | Chr3:90104960-90104979 | MsG0380016966.01.T01:CDS | 40.0% | |
| GATCATGAAGGAAGAGAAAG+TGG | + | Chr3:90106042-90106061 | MsG0380016966.01.T01:CDS | 40.0% | |
| GATTTGATCCTTTGAATCCG+TGG | + | Chr3:90105138-90105157 | MsG0380016966.01.T01:intron | 40.0% | |
| GTGGCTGAGAATAAAGAAGA+AGG | + | Chr3:90106115-90106134 | MsG0380016966.01.T01:CDS | 40.0% | |
| GTTATCACATCTTCAACACC+TGG | - | Chr3:90104875-90104894 | None:intergenic | 40.0% | |
| TAAGCAGTGGAATAATGAGC+TGG | + | Chr3:90105887-90105906 | MsG0380016966.01.T01:intron | 40.0% | |
| TCAGAAGAAGAGTCATAGGA+AGG | + | Chr3:90104964-90104983 | MsG0380016966.01.T01:CDS | 40.0% | |
| TCCGCACACAATGATTTAGT+TGG | - | Chr3:90105741-90105760 | None:intergenic | 40.0% | |
| TCTCATATGGTGGTTGTGAA+AGG | + | Chr3:90104905-90104924 | MsG0380016966.01.T01:CDS | 40.0% | |
| TCTTCTTTCTTCTCCTCTTC+AGG | - | Chr3:90105058-90105077 | None:intergenic | 40.0% | |
| TGAAGAGGAGAAGAAAGAAG+AGG | + | Chr3:90105057-90105076 | MsG0380016966.01.T01:CDS | 40.0% | |
| TGGGTATGCATACAAATCCA+TGG | - | Chr3:90106245-90106264 | None:intergenic | 40.0% | |
| !! | AACTCTGAGGTAAGTGTGAA+GGG | + | Chr3:90105959-90105978 | MsG0380016966.01.T01:CDS | 40.0% |
| !! | ATCTTTTGTTTCCTCTGGCT+TGG | - | Chr3:90104750-90104769 | None:intergenic | 40.0% |
| !! | GCTTCATCTTTTGTTTCCTC+TGG | - | Chr3:90104755-90104774 | None:intergenic | 40.0% |
| !!! | CTCCTCTTTTTTCTCTTCCT+CGG | - | Chr3:90106083-90106102 | None:intergenic | 40.0% |
| !!! | TTTTTTCTCTTCCTCGGCTT+TGG | - | Chr3:90106077-90106096 | None:intergenic | 40.0% |
| AAAAACGGCTCAACCAACCA+TGG | - | Chr3:90105443-90105462 | None:intergenic | 45.0% | |
| ACATGACACTGCACGCATTT+GGG | - | Chr3:90106363-90106382 | None:intergenic | 45.0% | |
| AGAGAAAGCAGAGCCATTGA+AGG | + | Chr3:90104928-90104947 | MsG0380016966.01.T01:CDS | 45.0% | |
| AGAGGAAAGTAAGACAGAGG+AGG | + | Chr3:90104691-90104710 | MsG0380016966.01.T01:CDS | 45.0% | |
| AGCCGAGGAAGAGAAAAAAG+AGG | + | Chr3:90106078-90106097 | MsG0380016966.01.T01:CDS | 45.0% | |
| CATGAAGGAAGAGAAAGTGG+AGG | + | Chr3:90106045-90106064 | MsG0380016966.01.T01:CDS | 45.0% | |
| CATGCATTGTGAAGCTTGTG+CGG | + | Chr3:90105219-90105238 | MsG0380016966.01.T01:CDS | 45.0% | |
| GAAGCATGCAGTGATCATGA+AGG | + | Chr3:90106030-90106049 | MsG0380016966.01.T01:CDS | 45.0% | |
| GACAGAGGAGGAAAAAACAG+AGG | + | Chr3:90104703-90104722 | MsG0380016966.01.T01:CDS | 45.0% | |
| GAGCATGATAGTAAGCAGCT+GGG | - | Chr3:90106288-90106307 | None:intergenic | 45.0% | |
| GCATAACTCCACGGATTCAA+AGG | - | Chr3:90105149-90105168 | None:intergenic | 45.0% | |
| GCTTCTTTCTCCTCTTCTTG+TGG | - | Chr3:90106157-90106176 | None:intergenic | 45.0% | |
| GGTGTATGATCCAACAATGC+TGG | + | Chr3:90105982-90106001 | MsG0380016966.01.T01:CDS | 45.0% | |
| GTGCGGAGGAGATCAAAAAA+CGG | + | Chr3:90105236-90105255 | MsG0380016966.01.T01:CDS | 45.0% | |
| TAAAGAAGAAGGAGAGGGTG+AGG | + | Chr3:90106126-90106145 | MsG0380016966.01.T01:CDS | 45.0% | |
| TATGCGCGGAATATCATGTC+CGG | + | Chr3:90105668-90105687 | MsG0380016966.01.T01:intron | 45.0% | |
| TGAGCATGATAGTAAGCAGC+TGG | - | Chr3:90106289-90106308 | None:intergenic | 45.0% | |
| TGAGGAGGAAAAAGTTGCTG+AGG | + | Chr3:90105018-90105037 | MsG0380016966.01.T01:CDS | 45.0% | |
| TGCATTGTGAAAGCTGTGCT+CGG | + | Chr3:90104822-90104841 | MsG0380016966.01.T01:CDS | 45.0% | |
| TTTCTCCTCTTCTTGTGGCT+TGG | - | Chr3:90106152-90106171 | None:intergenic | 45.0% | |
| ! | AGCAGAGCCATTGAAGGTTT+TGG | + | Chr3:90104934-90104953 | MsG0380016966.01.T01:CDS | 45.0% |
| ! | CGGTCCTTGAAAGATTTTCC+AGG | + | Chr3:90104854-90104873 | MsG0380016966.01.T01:CDS | 45.0% |
| !! | ACTCTGAGGTAAGTGTGAAG+GGG | + | Chr3:90105960-90105979 | MsG0380016966.01.T01:CDS | 45.0% |
| !! | ATGTAATTGACTCGCAGGAG+TGG | + | Chr3:90105913-90105932 | MsG0380016966.01.T01:intron | 45.0% |
| !! | GAACTCTGAGGTAAGTGTGA+AGG | + | Chr3:90105958-90105977 | MsG0380016966.01.T01:CDS | 45.0% |
| !! | GGTTGATGTAATTGACTCGC+AGG | + | Chr3:90105908-90105927 | MsG0380016966.01.T01:intron | 45.0% |
| !! | TCAGCAACTTTTTCCTCCTC+AGG | - | Chr3:90105019-90105038 | None:intergenic | 45.0% |
| !!! | AATTTTTTTTTTTTTTGTTT+AGG | + | Chr3:90104655-90104674 | MsG0380016966.01.T01:intron | 5.0% |
| CACATGACACTGCACGCATT+TGG | - | Chr3:90106364-90106383 | None:intergenic | 50.0% | |
| GAAGGAAGAGAAAGTGGAGG+AGG | + | Chr3:90106048-90106067 | MsG0380016966.01.T01:CDS | 50.0% | |
| GGAAGAAGAAACCAAGCCAG+AGG | + | Chr3:90104736-90104755 | MsG0380016966.01.T01:CDS | 50.0% | |
| TAGTAAGCAGCTGGGTATGC+AGG | - | Chr3:90106280-90106299 | None:intergenic | 50.0% | |
| TCACTGAACATTTGTGGCGC+CGG | - | Chr3:90106334-90106353 | None:intergenic | 50.0% | |
| TTCAGCATAATCTCTGCCGG+AGG | - | Chr3:90104794-90104813 | None:intergenic | 50.0% | |
| TTTCCTCCTCAGGAGCAGTT+GGG | - | Chr3:90105009-90105028 | None:intergenic | 50.0% | |
| ! | TTGACTCGCAGGAGTGGAAT+TGG | + | Chr3:90105919-90105938 | MsG0380016966.01.T01:intron | 50.0% |
| ! | TTTTCCTCCTCAGGAGCAGT+TGG | - | Chr3:90105010-90105029 | None:intergenic | 50.0% |
| !! | CTCTGAGGTAAGTGTGAAGG+GGG | + | Chr3:90105961-90105980 | MsG0380016966.01.T01:CDS | 50.0% |
| ACTCGCAGGAGTGGAATTGG+TGG | + | Chr3:90105922-90105941 | MsG0380016966.01.T01:intron | 55.0% | |
| AGAGAAGGCTGCACCTGAAG+AGG | + | Chr3:90105042-90105061 | MsG0380016966.01.T01:CDS | 55.0% | |
| AGCATAATCTCTGCCGGAGG+CGG | - | Chr3:90104791-90104810 | None:intergenic | 55.0% | |
| GCATTGTGAAGCTTGTGCGG+AGG | + | Chr3:90105222-90105241 | MsG0380016966.01.T01:CDS | 55.0% | |
| GCTGTGCTCGGAAAGTTCGT+CGG | + | Chr3:90104834-90104853 | MsG0380016966.01.T01:CDS | 55.0% | |
| TCCTCAGGAGCAGTTGGGAT+CGG | - | Chr3:90105004-90105023 | None:intergenic | 55.0% | |
| TGAGGCCAAGCCACAAGAAG+AGG | + | Chr3:90106144-90106163 | MsG0380016966.01.T01:CDS | 55.0% | |
| ATAATCTCTGCCGGAGGCGG+TGG | - | Chr3:90104788-90104807 | None:intergenic | 60.0% | |
| GATCCCAACTGCTCCTGAGG+AGG | + | Chr3:90105003-90105022 | MsG0380016966.01.T01:CDS | 60.0% | |
| TCCGATCCCAACTGCTCCTG+AGG | + | Chr3:90105000-90105019 | MsG0380016966.01.T01:CDS | 60.0% | |
| TGATGTTCCTCCACCGCCTC+CGG | + | Chr3:90104775-90104794 | MsG0380016966.01.T01:CDS | 60.0% | |
| ! | CTGAACATTTGTGGCGCCGG+TGG | - | Chr3:90106331-90106350 | None:intergenic | 60.0% |
| !! | AACATTTGTGGCGCCGGTGG+CGG | - | Chr3:90106328-90106347 | None:intergenic | 60.0% |
| ATACCCTCCACCACCGCCAC+CGG | + | Chr3:90106312-90106331 | MsG0380016966.01.T01:CDS | 65.0% | |
| GGAGGAGGAAGCCAAAGCCG+AGG | + | Chr3:90106063-90106082 | MsG0380016966.01.T01:CDS | 65.0% | |
| ATCTCTGCCGGAGGCGGTGG+AGG | - | Chr3:90104785-90104804 | None:intergenic | 70.0% | |
| !! | ATTTGTGGCGCCGGTGGCGG+TGG | - | Chr3:90106325-90106344 | None:intergenic | 70.0% |
| !!! | GCGCCGGTGGCGGTGGTGGA+GGG | - | Chr3:90106318-90106337 | None:intergenic | 80.0% |
| !!! | TGTGGCGCCGGTGGCGGTGG+TGG | - | Chr3:90106322-90106341 | None:intergenic | 80.0% |
| !!! | GGCGCCGGTGGCGGTGGTGG+AGG | - | Chr3:90106319-90106338 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 90104543 | 90106384 | 90104543 | ID=MsG0380016966.01;Name=MsG0380016966.01 |
| Chr3 | mRNA | 90104543 | 90106384 | 90104543 | ID=MsG0380016966.01.T01;Parent=MsG0380016966.01;Name=MsG0380016966.01.T01;_AED=0.45;_eAED=0.46;_QI=0|0.66|0.25|1|1|1|4|0|317 |
| Chr3 | exon | 90104543 | 90104551 | 90104543 | ID=MsG0380016966.01.T01:exon:25232;Parent=MsG0380016966.01.T01 |
| Chr3 | exon | 90104677 | 90105078 | 90104677 | ID=MsG0380016966.01.T01:exon:25233;Parent=MsG0380016966.01.T01 |
| Chr3 | exon | 90105187 | 90105274 | 90105187 | ID=MsG0380016966.01.T01:exon:25234;Parent=MsG0380016966.01.T01 |
| Chr3 | exon | 90105930 | 90106384 | 90105930 | ID=MsG0380016966.01.T01:exon:25235;Parent=MsG0380016966.01.T01 |
| Chr3 | CDS | 90104543 | 90104551 | 90104543 | ID=MsG0380016966.01.T01:cds;Parent=MsG0380016966.01.T01 |
| Chr3 | CDS | 90104677 | 90105078 | 90104677 | ID=MsG0380016966.01.T01:cds;Parent=MsG0380016966.01.T01 |
| Chr3 | CDS | 90105187 | 90105274 | 90105187 | ID=MsG0380016966.01.T01:cds;Parent=MsG0380016966.01.T01 |
| Chr3 | CDS | 90105930 | 90106384 | 90105930 | ID=MsG0380016966.01.T01:cds;Parent=MsG0380016966.01.T01 |
| Gene Sequence |
| Protein sequence |
