AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017347.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017347.01.T01 MTR_3g105730 63.426 216 4 3 49 189 1 216 1.72e-80 242
MsG0380017347.01.T01 MTR_1g014640 54.583 240 27 4 32 189 20 259 8.49e-75 229
MsG0380017347.01.T01 MTR_1g013400 54.583 240 27 4 32 189 20 259 8.49e-75 229
MsG0380017347.01.T01 MTR_3g105730 66.864 169 3 3 49 171 1 162 2.06e-63 196
MsG0380017347.01.T01 MTR_3g105730 58.201 189 4 3 76 189 6 194 3.43e-60 189
MsG0380017347.01.T01 MTR_1g115570 42.500 200 38 3 67 189 75 274 1.16e-38 136
MsG0380017347.01.T01 MTR_3g091060 37.056 197 49 3 68 189 80 276 4.35e-29 111
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017347.01.T01 AT4G31750 59.259 216 12 4 49 189 1 215 2.27e-71 219
MsG0380017347.01.T01 AT4G31750 59.259 216 12 4 49 189 1 215 3.92e-71 218
MsG0380017347.01.T01 AT4G31750 59.259 216 12 4 49 189 1 215 3.92e-71 218
MsG0380017347.01.T01 AT5G24940 53.704 216 24 4 49 189 1 215 1.22e-63 203
MsG0380017347.01.T01 AT5G10740 51.852 216 28 4 49 189 1 215 7.74e-60 191
MsG0380017347.01.T01 AT5G10740 51.852 216 28 4 49 189 1 215 7.74e-60 191
MsG0380017347.01.T01 AT1G43900 39.698 199 40 4 71 189 107 305 2.44e-33 122
MsG0380017347.01.T01 AT5G53140 35.468 203 55 4 65 191 83 285 8.60e-30 114
MsG0380017347.01.T01 AT5G53140 35.468 203 55 4 65 191 83 285 8.60e-30 114

Find 43 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATATTGCAGTTGTAATA+TGG 0.223036 3:-95220833 MsG0380017347.01.T01:CDS
TAATTAATGTACTATAGTTT+TGG 0.301052 3:+95221361 None:intergenic
GTAGACATATACCTGAATTC+TGG 0.324335 3:+95217766 None:intergenic
CTTGCTGTCTCTCGTGCATT+TGG 0.330364 3:-95217823 MsG0380017347.01.T01:CDS
CGGTCAGCGGTGGCGGTCTC+AGG 0.349611 3:-95220753 MsG0380017347.01.T01:intron
TTGTTGCTGATCCAGAATTC+AGG 0.369939 3:-95217777 MsG0380017347.01.T01:CDS
ACCATCAACACCGTCAATTC+TGG 0.393237 3:+95219920 None:intergenic
TCCATTGAAGATCTCTTGCC+AGG 0.411700 3:+95219957 None:intergenic
ATTCAGGTATATGTCTACTA+TGG 0.416468 3:-95217761 MsG0380017347.01.T01:CDS
CAAACGATCGCCAACTAGAA+TGG 0.427351 3:+95219170 None:intergenic
TTGCAAATGTTGGAGACTCC+AGG 0.434546 3:-95219143 MsG0380017347.01.T01:CDS
CACAATGGAAAGTTTAGCTA+TGG 0.445062 3:-95219993 MsG0380017347.01.T01:CDS
GATGGACCGGTCAGCGGTGG+CGG 0.451633 3:-95220760 MsG0380017347.01.T01:CDS
CGTTTGCTTGTTGCAAATGT+TGG 0.452880 3:-95219153 MsG0380017347.01.T01:CDS
TATGGGTATGCTAGCTCGCC+TGG 0.469009 3:-95219975 MsG0380017347.01.T01:CDS
AAATATTGCAGTTGTAATAT+GGG 0.474583 3:-95220832 MsG0380017347.01.T01:CDS
TTTACAGGAACTTGGAGAGT+TGG 0.480844 3:-95217853 MsG0380017347.01.T01:intron
GTTATATGCAGAGGCGGTAA+TGG 0.491548 3:-95219117 MsG0380017347.01.T01:intron
CCACATGAAATAGTCAAGAA+TGG 0.498671 3:+95217728 None:intergenic
ACAGGAACTTGGAGAGTTGG+AGG 0.502260 3:-95217850 MsG0380017347.01.T01:intron
ACCAGAATTGACGGTGTTGA+TGG 0.510608 3:-95219921 MsG0380017347.01.T01:CDS
GCCTCTGCATATAACGGCCC+TGG 0.511126 3:+95219125 None:intergenic
GCCTGGCAAGAGATCTTCAA+TGG 0.518466 3:-95219958 MsG0380017347.01.T01:CDS
GGTGTTGATGGTGAAATTGT+TGG 0.538738 3:-95219909 MsG0380017347.01.T01:CDS
CTGAGACCGCCACCGCTGAC+CGG 0.540884 3:+95220754 None:intergenic
GCATCTACCGCCATTCTAGT+TGG 0.543601 3:-95219180 MsG0380017347.01.T01:CDS
AAACAACATCACAAAGATGC+AGG 0.553915 3:-95219210 MsG0380017347.01.T01:CDS
TACCATCAAAGACTCCGAAA+AGG 0.557789 3:+95219886 None:intergenic
CAGGTCCGTGCTATAGATGA+TGG 0.565112 3:-95220778 MsG0380017347.01.T01:CDS
CATCATCTATAGCACGGACC+TGG 0.569833 3:+95220779 None:intergenic
TTGATAAGAATACTAAACAT+AGG 0.571441 3:+95221417 None:intergenic
ATTACCGCCTCTGCATATAA+CGG 0.580883 3:+95219119 None:intergenic
CCGTGCTATAGATGATGGAC+CGG 0.584948 3:-95220773 MsG0380017347.01.T01:CDS
AGCACGGACCTGGCTTGTTG+AGG 0.592387 3:+95220789 None:intergenic
ACAATGGAAAGTTTAGCTAT+GGG 0.597313 3:-95219992 MsG0380017347.01.T01:CDS
TGCAAATGTTGGAGACTCCA+GGG 0.600937 3:-95219142 MsG0380017347.01.T01:CDS
TCCAGGGCCGTTATATGCAG+AGG 0.616040 3:-95219126 MsG0380017347.01.T01:CDS
GATGATGGACCGGTCAGCGG+TGG 0.621402 3:-95220763 MsG0380017347.01.T01:CDS
ATAGATGATGGACCGGTCAG+CGG 0.638923 3:-95220766 MsG0380017347.01.T01:CDS
CCGGTCCATCATCTATAGCA+CGG 0.659296 3:+95220773 None:intergenic
ATTTGTACATGTAGTCACAA+TGG 0.664058 3:-95220008 MsG0380017347.01.T01:intron
AGGGCCGTTATATGCAGAGG+CGG 0.697345 3:-95219123 MsG0380017347.01.T01:CDS
ACGATCGCCAACTAGAATGG+CGG 0.716614 3:+95219173 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTTTTGAAAAAAATATATT+GGG + Chr3:95217890-95217909 None:intergenic 10.0%
!!! TTCTTTTGAAAAAAATATAT+TGG + Chr3:95217891-95217910 None:intergenic 10.0%
!!! TTGATAAATATTATTTTTAC+AGG - Chr3:95221293-95221312 MsG0380017347.01.T01:intron 10.0%
!!! TTTTTTTCAAAAGAAAATAT+AGG - Chr3:95217896-95217915 MsG0380017347.01.T01:intron 10.0%
!! AATATGAAATAATTCTTACA+CGG + Chr3:95219671-95219690 None:intergenic 15.0%
!! TATATTATGAAAAACTTAAG+AGG + Chr3:95220643-95220662 None:intergenic 15.0%
!!! AAATTTTATACATAAGTTGT+GGG - Chr3:95219024-95219043 MsG0380017347.01.T01:intron 15.0%
!!! ATATTTTTCACTAATCAATT+TGG + Chr3:95220510-95220529 None:intergenic 15.0%
!!! CATAAATTTTACAATTGATA+TGG + Chr3:95218133-95218152 None:intergenic 15.0%
!!! TAAATTTTATACATAAGTTG+TGG - Chr3:95219023-95219042 MsG0380017347.01.T01:intron 15.0%
!!! TAATTAATGTACTATAGTTT+TGG + Chr3:95217803-95217822 None:intergenic 15.0%
!! AAATATTGCAGTTGTAATAT+GGG - Chr3:95218329-95218348 MsG0380017347.01.T01:intron 20.0%
!! ACTAAACAATTATTCCTATA+TGG + Chr3:95219617-95219636 None:intergenic 20.0%
!! AGTTATAGACAAGTTTATAT+AGG + Chr3:95219700-95219719 None:intergenic 20.0%
!! GTATATATATATATGAGCTA+TGG - Chr3:95220951-95220970 MsG0380017347.01.T01:intron 20.0%
!! TGAAAAAAATATATTGGGTT+AGG + Chr3:95217885-95217904 None:intergenic 20.0%
!! TTGATAAGAATACTAAACAT+AGG + Chr3:95217747-95217766 None:intergenic 20.0%
!! TTTACAATTGATATGGTTAA+TGG + Chr3:95218126-95218145 None:intergenic 20.0%
!!! ATAGGGTTCTAAATTATTTA+AGG + Chr3:95220314-95220333 None:intergenic 20.0%
!!! ATATTATTTTTACAGGAACT+TGG - Chr3:95221300-95221319 MsG0380017347.01.T01:intron 20.0%
! AATTTATAGTCGATGTCATT+TGG - Chr3:95220383-95220402 MsG0380017347.01.T01:intron 25.0%
! ATAATATCTTGAATGCATGT+TGG + Chr3:95218505-95218524 None:intergenic 25.0%
! ATTGTTGAACAAACAAACTA+TGG - Chr3:95217964-95217983 MsG0380017347.01.T01:intron 25.0%
! CATTGACAATTCAAAATTTC+TGG + Chr3:95220268-95220287 None:intergenic 25.0%
! CGAAAAATTGAATACGTTAA+CGG - Chr3:95218897-95218916 MsG0380017347.01.T01:intron 25.0%
! GAAAAGCAAGAGTTATTATA+TGG + Chr3:95219883-95219902 None:intergenic 25.0%
! GAAATATTGCAGTTGTAATA+TGG - Chr3:95218328-95218347 MsG0380017347.01.T01:intron 25.0%
! GTTAATGGTAGAAGAAAAAA+GGG + Chr3:95218111-95218130 None:intergenic 25.0%
! GTTCAAAAATAACAACAAAG+AGG + Chr3:95219583-95219602 None:intergenic 25.0%
! TAAAAGAGACTTAACTTACA+CGG + Chr3:95218714-95218733 None:intergenic 25.0%
! TGATTTCAGATATTCATTGT+CGG + Chr3:95219930-95219949 None:intergenic 25.0%
! TTAGTGTATTATATGATGCA+TGG - Chr3:95220881-95220900 MsG0380017347.01.T01:CDS 25.0%
! TTATTCCTATATGGAATAAC+TGG + Chr3:95219608-95219627 None:intergenic 25.0%
! TTGTTGAACAAACAAACTAT+GGG - Chr3:95217965-95217984 MsG0380017347.01.T01:intron 25.0%
! TTTCCATTGCTTACAATATT+CGG - Chr3:95219431-95219450 MsG0380017347.01.T01:intron 25.0%
!! AAAAAACTAGTCTGTGTTAT+AGG - Chr3:95218956-95218975 MsG0380017347.01.T01:intron 25.0%
!! AACATTTTCTACAGAAGTTA+TGG + Chr3:95220749-95220768 None:intergenic 25.0%
!! AACTTGTCTATAACTCTTTT+AGG - Chr3:95219705-95219724 MsG0380017347.01.T01:intron 25.0%
!! ATATGCAAATCAACACATTT+TGG + Chr3:95218458-95218477 None:intergenic 25.0%
!! CAATTTTCTCCTTAGATTAT+AGG - Chr3:95218867-95218886 MsG0380017347.01.T01:intron 25.0%
!! CGTTAACGTATTCAATTTTT+CGG + Chr3:95218899-95218918 None:intergenic 25.0%
!! GTTATGGAAACAAAAACTTT+TGG + Chr3:95220733-95220752 None:intergenic 25.0%
!! TAAATCAAATTTTTGTGTGC+AGG - Chr3:95218175-95218194 MsG0380017347.01.T01:intron 25.0%
!! TATTCAAGAGAAAGTTGTTT+TGG + Chr3:95218816-95218835 None:intergenic 25.0%
!! TGTAAGCAATGGAAAATTTT+TGG + Chr3:95219426-95219445 None:intergenic 25.0%
!!! ATTCAAGAGAAAGTTGTTTT+GGG + Chr3:95218815-95218834 None:intergenic 25.0%
!!! TTGGATTCATTCATTGATTT+GGG - Chr3:95219071-95219090 MsG0380017347.01.T01:intron 25.0%
!!! TTTCTCTAATTTTTTTCTCC+TGG - Chr3:95219310-95219329 MsG0380017347.01.T01:intron 25.0%
AAGTAGTTGTACACAAAAGA+TGG - Chr3:95218740-95218759 MsG0380017347.01.T01:intron 30.0%
ACAATGGAAAGTTTAGCTAT+GGG - Chr3:95219169-95219188 MsG0380017347.01.T01:CDS 30.0%
ACACTAATGTTATGATCACT+TGG - Chr3:95218238-95218257 MsG0380017347.01.T01:intron 30.0%
ACCTTCAAAAAATTCTTTCG+CGG + Chr3:95219506-95219525 None:intergenic 30.0%
AGTGATCATAACATTAGTGT+AGG + Chr3:95218238-95218257 None:intergenic 30.0%
ATGACCCTACTAAAAGAATA+GGG + Chr3:95220331-95220350 None:intergenic 30.0%
ATGAGCTATGGAAAATATAG+TGG - Chr3:95220963-95220982 MsG0380017347.01.T01:intron 30.0%
ATTCAGGTATATGTCTACTA+TGG - Chr3:95221400-95221419 MsG0380017347.01.T01:CDS 30.0%
ATTTGTACATGTAGTCACAA+TGG - Chr3:95219153-95219172 MsG0380017347.01.T01:CDS 30.0%
CAAAAATAACAACAAAGAGG+AGG + Chr3:95219580-95219599 None:intergenic 30.0%
CATTCTACTTCTACATAAGA+AGG + Chr3:95221095-95221114 None:intergenic 30.0%
CCAACAAAAGGTTTGTAAAT+TGG + Chr3:95219532-95219551 None:intergenic 30.0%
GGTTAATGGTAGAAGAAAAA+AGG + Chr3:95218112-95218131 None:intergenic 30.0%
GTGATCATAACATTAGTGTA+GGG + Chr3:95218237-95218256 None:intergenic 30.0%
TGAGCTATGGAAAATATAGT+GGG - Chr3:95220964-95220983 MsG0380017347.01.T01:intron 30.0%
TTATCCTCGATATTATGTCT+CGG - Chr3:95218602-95218621 MsG0380017347.01.T01:intron 30.0%
TTATGATCACTTGGAATCTT+TGG - Chr3:95218247-95218266 MsG0380017347.01.T01:intron 30.0%
TTTCCGAATATTGTAAGCAA+TGG + Chr3:95219437-95219456 None:intergenic 30.0%
! AGAACCCTATTCTTTTAGTA+GGG - Chr3:95220324-95220343 MsG0380017347.01.T01:intron 30.0%
! AGATAACAAACAAGTTGAAG+AGG + Chr3:95220479-95220498 None:intergenic 30.0%
! ATTCCCTTGTGAAAGATTTT+CGG + Chr3:95219359-95219378 None:intergenic 30.0%
! CCAATTTACAAACCTTTTGT+TGG - Chr3:95219529-95219548 MsG0380017347.01.T01:intron 30.0%
! CTTGGATTCATTCATTGATT+TGG - Chr3:95219070-95219089 MsG0380017347.01.T01:intron 30.0%
! GTGCTTTTCTTTCATCATTT+TGG - Chr3:95218294-95218313 MsG0380017347.01.T01:intron 30.0%
! TACTTTTAGACATCATTGCT+TGG - Chr3:95219052-95219071 MsG0380017347.01.T01:intron 30.0%
! TAGAACCCTATTCTTTTAGT+AGG - Chr3:95220323-95220342 MsG0380017347.01.T01:intron 30.0%
! TTTTATGAGACCAGAATTGA+CGG - Chr3:95219231-95219250 MsG0380017347.01.T01:intron 30.0%
!! TCTATAACTCTTTTAGGTCA+TGG - Chr3:95219711-95219730 MsG0380017347.01.T01:intron 30.0%
!! TGGATTCATTCATTGATTTG+GGG - Chr3:95219072-95219091 MsG0380017347.01.T01:intron 30.0%
!! TGGTGTCAGAAATGAATTTT+GGG + Chr3:95219793-95219812 None:intergenic 30.0%
!!! TTGGTGTCAGAAATGAATTT+TGG + Chr3:95219794-95219813 None:intergenic 30.0%
AAACAACATCACAAAGATGC+AGG - Chr3:95219951-95219970 MsG0380017347.01.T01:CDS 35.0%
AACCTCCAGTTATTCCATAT+AGG - Chr3:95219600-95219619 MsG0380017347.01.T01:intron 35.0%
AATGGTAGAAGAAAAAAGGG+AGG + Chr3:95218108-95218127 None:intergenic 35.0%
AGCTATGGAAAATATAGTGG+GGG - Chr3:95220966-95220985 MsG0380017347.01.T01:intron 35.0%
ATGATTATATGCATCAGCTG+TGG + Chr3:95219905-95219924 None:intergenic 35.0%
ATGCATGTTGGCAAATGATA+CGG + Chr3:95218493-95218512 None:intergenic 35.0%
ATGCCGAAAATCTTTCACAA+GGG - Chr3:95219353-95219372 MsG0380017347.01.T01:intron 35.0%
ATGGTAGAAGAAAAAAGGGA+GGG + Chr3:95218107-95218126 None:intergenic 35.0%
CACAATGGAAAGTTTAGCTA+TGG - Chr3:95219168-95219187 MsG0380017347.01.T01:CDS 35.0%
GAGCTATGGAAAATATAGTG+GGG - Chr3:95220965-95220984 MsG0380017347.01.T01:intron 35.0%
GATGACCCTACTAAAAGAAT+AGG + Chr3:95220332-95220351 None:intergenic 35.0%
GTAGACATATACCTGAATTC+TGG + Chr3:95221398-95221417 None:intergenic 35.0%
GTATGCATGAAAACTATACG+TGG - Chr3:95220853-95220872 MsG0380017347.01.T01:CDS 35.0%
TATGCCGAAAATCTTTCACA+AGG - Chr3:95219352-95219371 MsG0380017347.01.T01:intron 35.0%
TCTTGTCTTTAGCCAACAAA+AGG + Chr3:95219544-95219563 None:intergenic 35.0%
TGTTAGTGCACGAGTAAAAA+TGG - Chr3:95220219-95220238 MsG0380017347.01.T01:intron 35.0%
TTCAAAAAATTCTTTCGCGG+TGG + Chr3:95219503-95219522 None:intergenic 35.0%
TTCCTATATGGAATAACTGG+AGG + Chr3:95219605-95219624 None:intergenic 35.0%
TTTCCAATCAAAATTCGACC+AGG + Chr3:95219331-95219350 None:intergenic 35.0%
! GAACATACCTATTGCTGATT+TGG + Chr3:95219813-95219832 None:intergenic 35.0%
! TCTTACACGGTTTATTTCTC+AGG + Chr3:95219658-95219677 None:intergenic 35.0%
!! ATAACTCTTTTAGGTCATGG+CGG - Chr3:95219714-95219733 MsG0380017347.01.T01:intron 35.0%
!! GGATTCATTCATTGATTTGG+GGG - Chr3:95219073-95219092 MsG0380017347.01.T01:intron 35.0%
!!! ACCGCGAAAGAATTTTTTGA+AGG - Chr3:95219502-95219521 MsG0380017347.01.T01:intron 35.0%
AAAAAGGGAGGGAAAAAGAG+AGG + Chr3:95218096-95218115 None:intergenic 40.0%
AGGGAAAAAGAGAGGAAGTT+AGG + Chr3:95218088-95218107 None:intergenic 40.0%
AGTGCACGAGTAAAAATGGT+AGG - Chr3:95220223-95220242 MsG0380017347.01.T01:intron 40.0%
ATTACCGCCTCTGCATATAA+CGG + Chr3:95220045-95220064 None:intergenic 40.0%
CGGACACAACCTATAATCTA+AGG + Chr3:95218879-95218898 None:intergenic 40.0%
CTAGTCTGTGTTATAGGTTG+AGG - Chr3:95218962-95218981 MsG0380017347.01.T01:intron 40.0%
CTTTCTATCTTCCCTTTCTC+AGG - Chr3:95218060-95218079 MsG0380017347.01.T01:intron 40.0%
GAAGTTAGGTACCTGAGAAA+GGG + Chr3:95218074-95218093 None:intergenic 40.0%
GAGAGTTGAGAAAACAGAAG+AGG + Chr3:95218025-95218044 None:intergenic 40.0%
GCATCTCTCACATCTTTATG+TGG + Chr3:95220706-95220725 None:intergenic 40.0%
GTGCACGAGTAAAAATGGTA+GGG - Chr3:95220224-95220243 MsG0380017347.01.T01:intron 40.0%
TACACCGAGACATAATATCG+AGG + Chr3:95218609-95218628 None:intergenic 40.0%
TACCATCAAAGACTCCGAAA+AGG + Chr3:95219278-95219297 None:intergenic 40.0%
TCTGACACCAAATCAGCAAT+AGG - Chr3:95219803-95219822 MsG0380017347.01.T01:intron 40.0%
TTCACAAGGGAATCATGTCA+TGG - Chr3:95219366-95219385 MsG0380017347.01.T01:intron 40.0%
TTGTTGCTGATCCAGAATTC+AGG - Chr3:95221384-95221403 MsG0380017347.01.T01:CDS 40.0%
TTTACAGGAACTTGGAGAGT+TGG - Chr3:95221308-95221327 MsG0380017347.01.T01:intron 40.0%
! CGTTTGCTTGTTGCAAATGT+TGG - Chr3:95220008-95220027 MsG0380017347.01.T01:intron 40.0%
! TACAAGAAAGCACGATTGGA+AGG + Chr3:95221133-95221152 None:intergenic 40.0%
! TTGCTACAAGAAAGCACGAT+TGG + Chr3:95221137-95221156 None:intergenic 40.0%
!! CATTGATTTGGGGGAAAAGA+GGG - Chr3:95219082-95219101 MsG0380017347.01.T01:intron 40.0%
!! GGTGTTGATGGTGAAATTGT+TGG - Chr3:95219252-95219271 MsG0380017347.01.T01:intron 40.0%
!! TCATTGATTTGGGGGAAAAG+AGG - Chr3:95219081-95219100 MsG0380017347.01.T01:intron 40.0%
!! TCTCCTGGTCGAATTTTGAT+TGG - Chr3:95219325-95219344 MsG0380017347.01.T01:intron 40.0%
!!! GGTGAAATTGTTGGCCTTTT+CGG - Chr3:95219261-95219280 MsG0380017347.01.T01:intron 40.0%
ACCAAACTGATGAGAGGCAA+AGG - Chr3:95221184-95221203 MsG0380017347.01.T01:intron 45.0%
ACCATCAACACCGTCAATTC+TGG + Chr3:95219244-95219263 None:intergenic 45.0%
AGGCAAAGGATTGAAGATGC+AGG - Chr3:95221198-95221217 MsG0380017347.01.T01:intron 45.0%
CAAACGATCGCCAACTAGAA+TGG + Chr3:95219994-95220013 None:intergenic 45.0%
CAAAGGATTGAAGATGCAGG+AGG - Chr3:95221201-95221220 MsG0380017347.01.T01:intron 45.0%
CAAGCCCACAAAGACTATAC+TGG - Chr3:95220991-95221010 MsG0380017347.01.T01:intron 45.0%
GAGACTTAACTTACACGGAC+AGG + Chr3:95218709-95218728 None:intergenic 45.0%
GATCACTTGGAATCTTTGGC+AGG - Chr3:95218251-95218270 MsG0380017347.01.T01:intron 45.0%
GGAAGTTAGGTACCTGAGAA+AGG + Chr3:95218075-95218094 None:intergenic 45.0%
GGAGCCAGTATAGTCTTTGT+GGG + Chr3:95220998-95221017 None:intergenic 45.0%
GTTATATGCAGAGGCGGTAA+TGG - Chr3:95220044-95220063 MsG0380017347.01.T01:intron 45.0%
TCCATTGAAGATCTCTTGCC+AGG + Chr3:95219207-95219226 None:intergenic 45.0%
TCCTTTGCCTCTCATCAGTT+TGG + Chr3:95221188-95221207 None:intergenic 45.0%
TGCAAATGTTGGAGACTCCA+GGG - Chr3:95220019-95220038 MsG0380017347.01.T01:intron 45.0%
TTGCAAATGTTGGAGACTCC+AGG - Chr3:95220018-95220037 MsG0380017347.01.T01:intron 45.0%
! ACCAGAATTGACGGTGTTGA+TGG - Chr3:95219240-95219259 MsG0380017347.01.T01:intron 45.0%
!! AGATGCAGGAGGCTTGTTAT+TGG - Chr3:95221212-95221231 MsG0380017347.01.T01:intron 45.0%
!! AGTTTTGTCCTCAACAAGCC+AGG - Chr3:95218364-95218383 MsG0380017347.01.T01:intron 45.0%
!! GATGCAGGAGGCTTGTTATT+GGG - Chr3:95221213-95221232 MsG0380017347.01.T01:intron 45.0%
AATGGTAGGGATGCATCCAG+TGG - Chr3:95220237-95220256 MsG0380017347.01.T01:intron 50.0%
ACAGGAACTTGGAGAGTTGG+AGG - Chr3:95221311-95221330 MsG0380017347.01.T01:intron 50.0%
ACGATCGCCAACTAGAATGG+CGG + Chr3:95219991-95220010 None:intergenic 50.0%
AGCCAGACCAAACTGATGAG+AGG - Chr3:95221178-95221197 MsG0380017347.01.T01:intron 50.0%
ATACACGATGCATCCAGTGG+CGG + Chr3:95221019-95221038 None:intergenic 50.0%
CAGGTCCGTGCTATAGATGA+TGG - Chr3:95218383-95218402 MsG0380017347.01.T01:intron 50.0%
CATAAAGACCATGCAGCGAC+AGG + Chr3:95219842-95219861 None:intergenic 50.0%
CATCATCTATAGCACGGACC+TGG + Chr3:95218385-95218404 None:intergenic 50.0%
CCGGTCCATCATCTATAGCA+CGG + Chr3:95218391-95218410 None:intergenic 50.0%
CGGAGCCAGTATAGTCTTTG+TGG + Chr3:95220999-95221018 None:intergenic 50.0%
GCATCTACCGCCATTCTAGT+TGG - Chr3:95219981-95220000 MsG0380017347.01.T01:CDS 50.0%
GCCTGGCAAGAGATCTTCAA+TGG - Chr3:95219203-95219222 MsG0380017347.01.T01:CDS 50.0%
TGCATACACGATGCATCCAG+TGG + Chr3:95221022-95221041 None:intergenic 50.0%
TGCCTCTCATCAGTTTGGTC+TGG + Chr3:95221183-95221202 None:intergenic 50.0%
! CTTGCTGTCTCTCGTGCATT+TGG - Chr3:95221338-95221357 MsG0380017347.01.T01:intron 50.0%
! GGCCTTTTCGGAGTCTTTGA+TGG - Chr3:95219273-95219292 MsG0380017347.01.T01:intron 50.0%
!! AAAATTTCTGGCTCCGCCAC+TGG + Chr3:95220256-95220275 None:intergenic 50.0%
!! ATAGATGATGGACCGGTCAG+CGG - Chr3:95218395-95218414 MsG0380017347.01.T01:intron 50.0%
!! CCGTGCTATAGATGATGGAC+CGG - Chr3:95218388-95218407 MsG0380017347.01.T01:intron 50.0%
!! GGCTTGTTATTGGGCTGGTA+AGG - Chr3:95221222-95221241 MsG0380017347.01.T01:intron 50.0%
AAAGACCATGCAGCGACAGG+TGG + Chr3:95219839-95219858 None:intergenic 55.0%
AGGGCCGTTATATGCAGAGG+CGG - Chr3:95220038-95220057 MsG0380017347.01.T01:intron 55.0%
TATGGGTATGCTAGCTCGCC+TGG - Chr3:95219186-95219205 MsG0380017347.01.T01:CDS 55.0%
TCCAGGGCCGTTATATGCAG+AGG - Chr3:95220035-95220054 MsG0380017347.01.T01:intron 55.0%
!! CAGGAGGCTTGTTATTGGGC+TGG - Chr3:95221217-95221236 MsG0380017347.01.T01:intron 55.0%
GCCTCTGCATATAACGGCCC+TGG + Chr3:95220039-95220058 None:intergenic 60.0%
GGTAGGGATGCATCCAGTGG+CGG - Chr3:95220240-95220259 MsG0380017347.01.T01:intron 60.0%
TCTCTCCACCTGTCGCTGCA+TGG - Chr3:95219831-95219850 MsG0380017347.01.T01:intron 60.0%
TTTCGCGGTGGCAGAGAACG+AGG + Chr3:95219491-95219510 None:intergenic 60.0%
!! AGCACGGACCTGGCTTGTTG+AGG + Chr3:95218375-95218394 None:intergenic 60.0%
!! GACTATACTGGCTCCGCCAC+TGG - Chr3:95221003-95221022 MsG0380017347.01.T01:intron 60.0%
!! GATGATGGACCGGTCAGCGG+TGG - Chr3:95218398-95218417 MsG0380017347.01.T01:intron 65.0%
CTGAGACCGCCACCGCTGAC+CGG + Chr3:95218410-95218429 None:intergenic 70.0%
GATGGACCGGTCAGCGGTGG+CGG - Chr3:95218401-95218420 MsG0380017347.01.T01:intron 70.0%
! CGGTCAGCGGTGGCGGTCTC+AGG - Chr3:95218408-95218427 MsG0380017347.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 95217741 95221442 95217741 ID=MsG0380017347.01;Name=MsG0380017347.01
Chr3 mRNA 95217741 95221442 95217741 ID=MsG0380017347.01.T01;Parent=MsG0380017347.01;Name=MsG0380017347.01.T01;_AED=0.50;_eAED=0.59;_QI=0|0.25|0.2|1|0.25|0.4|5|0|200
Chr3 exon 95221373 95221442 95221373 ID=MsG0380017347.01.T01:exon:17383;Parent=MsG0380017347.01.T01
Chr3 exon 95220754 95220910 95220754 ID=MsG0380017347.01.T01:exon:17382;Parent=MsG0380017347.01.T01
Chr3 exon 95219884 95220016 95219884 ID=MsG0380017347.01.T01:exon:17381;Parent=MsG0380017347.01.T01
Chr3 exon 95219118 95219232 95219118 ID=MsG0380017347.01.T01:exon:17380;Parent=MsG0380017347.01.T01
Chr3 exon 95217741 95217868 95217741 ID=MsG0380017347.01.T01:exon:17379;Parent=MsG0380017347.01.T01
Chr3 CDS 95221373 95221442 95221373 ID=MsG0380017347.01.T01:cds;Parent=MsG0380017347.01.T01
Chr3 CDS 95220754 95220910 95220754 ID=MsG0380017347.01.T01:cds;Parent=MsG0380017347.01.T01
Chr3 CDS 95219884 95220016 95219884 ID=MsG0380017347.01.T01:cds;Parent=MsG0380017347.01.T01
Chr3 CDS 95219118 95219232 95219118 ID=MsG0380017347.01.T01:cds;Parent=MsG0380017347.01.T01
Chr3 CDS 95217741 95217868 95217741 ID=MsG0380017347.01.T01:cds;Parent=MsG0380017347.01.T01
Gene Sequence

>MsG0380017347.01.T01

ATGCCTATGTTTAGTATTCTTATCAACATCATTAATTCATTGATTGTTCAAGAATATCACCAAAACTATAGAAAAAATCAAATAAACAATAGTGCTTTTCTTTCATCATTTTGGTCAAAGAAAGAGAAATATTGCAGTTGTAATATGGGATATCTCAATTCAGTTTTGTCCTCAACAAGCCAGGTCCGTGCTATAGATGATGGACCGGTCAGCGGTGGCGGTCTCAGTCACAATGGAAAGTTTAGCTATGGGTATGCTAGCTCGCCTGGCAAGAGATCTTCAATGGAAGATTTTTATGAGACCAGAATTGACGGTGTTGATGGTGAAATTGTTGGCCTTTTCGGAGTCTTTGATGGTATAAAACAACATCACAAAGATGCAGGATCTACTGCATCTACCGCCATTCTAGTTGGCGATCGTTTGCTTGTTGCAAATGTTGGAGACTCCAGGGCCGTTATATGCAGAGGCGGTAATGGAACTTGGAGAGTTGGAGGTTTTCTTGCTGTCTCTCGTGCATTTGGTGATAGACTCTTGAAGCAGTATGTTGTTGCTGATCCAGAATTCAGGTATATGTCTACTATGGTTAGAGAAATCCATTCTTGA
Protein sequence

>MsG0380017347.01.T01

MPMFSILINIINSLIVQEYHQNYRKNQINNSAFLSSFWSKKEKYCSCNMGYLNSVLSSTSQVRAIDDGPVSGGGLSHNGKFSYGYASSPGKRSSMEDFYETRIDGVDGEIVGLFGVFDGIKQHHKDAGSTASTAILVGDRLLVANVGDSRAVICRGGNGTWRVGGFLAVSRAFGDRLLKQYVVADPEFRYMSTMVREIHS*