AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017469.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017469.01.T01 MTR_3g107995 72.449 392 34 4 1 318 1 392 0.0 513
MsG0380017469.01.T01 MTR_1g011380 49.555 337 92 7 44 305 70 403 8.17e-94 284
MsG0380017469.01.T01 MTR_4g102870 31.293 294 119 10 66 287 78 360 1.55e-26 108
MsG0380017469.01.T01 MTR_8g105330 28.409 264 133 6 77 287 69 329 2.13e-25 104
MsG0380017469.01.T01 MTR_5g096410 34.252 254 141 5 59 288 76 327 4.55e-25 103
MsG0380017469.01.T01 MTR_5g096410 34.100 261 141 6 59 288 76 336 4.35e-24 100
MsG0380017469.01.T01 MTR_5g096410 33.712 264 141 6 59 288 76 339 1.01e-23 99.8
MsG0380017469.01.T01 MTR_5g010720 38.931 131 56 3 178 287 249 376 2.87e-22 96.3
MsG0380017469.01.T01 MTR_7g076010 39.683 126 52 3 182 287 235 356 2.81e-21 93.2
MsG0380017469.01.T01 MTR_1g032440 34.400 125 60 2 182 287 222 343 2.59e-18 84.7
MsG0380017469.01.T01 MTR_7g088500 27.155 232 138 7 86 287 60 290 7.40e-17 79.7
MsG0380017469.01.T01 MTR_3g078450 39.583 96 46 4 209 298 76 165 3.73e-15 73.6
MsG0380017469.01.T01 MTR_4g116460 46.970 66 34 1 223 287 464 529 6.23e-14 72.8
MsG0380017469.01.T01 MTR_4g116460 46.970 66 34 1 223 287 421 486 6.40e-14 72.4
MsG0380017469.01.T01 MTR_7g116180 42.308 78 39 2 209 285 67 139 2.47e-13 67.8
MsG0380017469.01.T01 MTR_1g114240 37.805 82 44 1 206 287 258 332 2.58e-13 70.1
MsG0380017469.01.T01 MTR_1g114240 37.805 82 44 1 206 287 252 326 2.71e-13 70.1
MsG0380017469.01.T01 MTR_8g037150 37.647 85 42 2 206 287 164 240 3.68e-13 68.6
MsG0380017469.01.T01 MTR_3g110190 31.818 132 68 5 175 293 21 143 4.33e-13 69.3
MsG0380017469.01.T01 MTR_1g070425 42.308 78 39 2 209 285 68 140 4.69e-13 67.0
MsG0380017469.01.T01 MTR_7g088560 32.168 143 70 4 170 287 41 181 5.07e-13 67.0
MsG0380017469.01.T01 MTR_7g096690 37.778 90 51 3 207 295 68 153 7.10e-13 68.6
MsG0380017469.01.T01 MTR_5g026260 37.975 79 41 3 210 287 479 550 1.30e-12 68.6
MsG0380017469.01.T01 MTR_4g065670 38.824 85 41 2 206 287 164 240 1.50e-12 66.6
MsG0380017469.01.T01 MTR_4g065670 38.824 85 41 2 206 287 171 247 1.54e-12 67.0
MsG0380017469.01.T01 MTR_7g079290 39.080 87 48 2 200 285 116 198 2.75e-12 65.5
MsG0380017469.01.T01 MTR_8g072020 37.838 74 38 2 215 287 424 490 3.16e-12 67.4
MsG0380017469.01.T01 MTR_8g072020 37.838 74 38 2 215 287 385 451 3.17e-12 67.4
MsG0380017469.01.T01 MTR_3g078470 40.244 82 42 3 205 285 72 147 4.02e-12 65.1
MsG0380017469.01.T01 MTR_7g116200 34.783 92 49 3 195 285 55 136 1.06e-11 62.8
MsG0380017469.01.T01 MTR_5g092790 36.170 94 50 4 200 291 149 234 1.27e-11 63.9
MsG0380017469.01.T01 MTR_7g116220 36.145 83 47 2 208 289 69 146 1.40e-11 62.8
MsG0380017469.01.T01 MTR_3g086630 48.000 50 24 2 237 285 101 149 1.42e-11 62.0
MsG0380017469.01.T01 MTR_7g088570 33.058 121 57 4 191 287 167 287 2.24e-11 63.9
MsG0380017469.01.T01 MTR_1g090480 28.082 146 82 6 159 285 4 145 3.37e-11 61.2
MsG0380017469.01.T01 MTR_8g019710 40.260 77 40 3 243 314 54 129 3.82e-11 60.5
MsG0380017469.01.T01 MTR_8g066740 31.915 94 59 2 196 288 63 152 3.86e-11 63.2
MsG0380017469.01.T01 MTR_1g056350 32.967 91 54 3 209 297 74 159 4.55e-11 61.2
MsG0380017469.01.T01 MTR_2g044570 40.845 71 36 2 218 287 63 128 4.97e-11 62.8
MsG0380017469.01.T01 MTR_1g074190 34.021 97 56 3 192 287 87 176 7.56e-11 62.8
MsG0380017469.01.T01 MTR_4g129420 36.250 80 43 2 209 287 117 189 8.06e-11 63.2
MsG0380017469.01.T01 MTR_1g043410 35.106 94 53 3 208 300 93 179 8.15e-11 62.4
MsG0380017469.01.T01 MTR_3g099650 34.568 81 47 3 208 287 106 181 8.72e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017469.01.T01 AT4G32600 44.348 345 100 8 60 314 107 449 3.20e-81 253
MsG0380017469.01.T01 AT4G32600 44.348 345 100 8 60 314 107 449 3.20e-81 253
MsG0380017469.01.T01 AT1G80400 41.121 321 112 8 46 290 83 402 3.04e-73 231
MsG0380017469.01.T01 AT4G26580 32.246 276 146 9 43 287 68 333 4.77e-28 111
MsG0380017469.01.T01 AT4G26580 32.246 276 146 9 43 287 68 333 4.77e-28 111
MsG0380017469.01.T01 AT5G55970 31.518 257 148 5 59 287 85 341 1.08e-27 110
MsG0380017469.01.T01 AT5G55970 31.518 257 148 5 59 287 85 341 1.08e-27 110
MsG0380017469.01.T01 AT3G61180 29.252 294 131 8 66 290 85 370 4.06e-26 107
MsG0380017469.01.T01 AT4G11680 27.972 286 135 8 66 290 110 385 4.61e-26 107
MsG0380017469.01.T01 AT1G68070 26.838 272 145 8 66 287 69 336 8.14e-25 102
MsG0380017469.01.T01 AT1G63170 40.299 134 53 4 178 287 239 369 8.44e-23 97.8
MsG0380017469.01.T01 AT4G11680 25.714 315 134 8 66 290 110 414 8.94e-23 98.2
MsG0380017469.01.T01 AT1G12760 40.909 132 53 4 178 287 269 397 9.16e-23 98.2
MsG0380017469.01.T01 AT1G12760 40.909 132 53 4 178 287 198 326 9.94e-23 97.1
MsG0380017469.01.T01 AT2G01735 24.211 285 152 7 66 292 78 356 8.64e-21 92.0
MsG0380017469.01.T01 AT3G19910 39.759 83 41 2 206 287 258 332 2.19e-15 76.3
MsG0380017469.01.T01 AT5G45290 41.772 79 36 3 210 287 466 535 8.32e-13 69.3
MsG0380017469.01.T01 AT5G57750 46.479 71 30 2 215 284 101 164 9.19e-13 66.6
MsG0380017469.01.T01 AT3G63530 36.585 82 47 1 206 287 165 241 1.59e-12 66.6
MsG0380017469.01.T01 AT3G63530 36.585 82 47 1 206 287 165 241 1.59e-12 66.6
MsG0380017469.01.T01 AT5G66070 35.632 87 43 3 203 287 146 221 2.70e-12 65.9
MsG0380017469.01.T01 AT5G66070 35.632 87 43 3 203 287 146 221 2.70e-12 65.9
MsG0380017469.01.T01 AT5G27420 31.000 100 61 4 208 304 94 188 4.63e-12 66.6
MsG0380017469.01.T01 AT5G66070 35.632 87 43 3 203 287 170 245 5.48e-12 65.1
MsG0380017469.01.T01 AT2G15530 41.429 70 36 1 222 286 630 699 1.02e-11 66.2
MsG0380017469.01.T01 AT2G15530 41.429 70 36 1 222 286 630 699 1.02e-11 66.2
MsG0380017469.01.T01 AT2G15530 41.429 70 36 1 222 286 630 699 1.02e-11 66.2
MsG0380017469.01.T01 AT2G15530 41.429 70 36 1 222 286 630 699 1.02e-11 66.2
MsG0380017469.01.T01 AT2G15530 41.429 70 36 1 222 286 630 699 1.02e-11 66.2
MsG0380017469.01.T01 AT5G45290 40.000 80 37 3 210 287 466 536 1.08e-11 65.9
MsG0380017469.01.T01 AT2G15530 41.429 70 36 1 222 286 608 677 1.14e-11 65.9
MsG0380017469.01.T01 AT3G05200 32.955 88 53 3 205 291 95 177 1.60e-11 65.1
MsG0380017469.01.T01 AT4G09560 44.286 70 31 2 218 286 216 278 2.19e-11 64.7
MsG0380017469.01.T01 AT1G22670 33.600 125 75 5 178 299 170 289 2.66e-11 64.3
MsG0380017469.01.T01 AT2G35910 31.868 91 52 3 209 297 121 203 2.76e-11 62.8
MsG0380017469.01.T01 AT5G06490 32.530 83 54 2 204 285 91 172 2.96e-11 62.4
MsG0380017469.01.T01 AT1G04360 35.802 81 50 2 208 287 100 179 3.14e-11 63.9
MsG0380017469.01.T01 AT4G09120 31.579 114 66 6 181 287 60 168 3.81e-11 63.5
MsG0380017469.01.T01 AT1G35330 31.068 103 59 4 207 302 98 195 4.22e-11 63.5
MsG0380017469.01.T01 AT5G43420 31.405 121 60 4 206 307 95 211 5.58e-11 63.2
MsG0380017469.01.T01 AT1G74620 33.333 126 56 5 194 291 107 232 6.26e-11 62.0
MsG0380017469.01.T01 AT2G35000 34.568 81 47 3 208 287 105 180 6.90e-11 63.2

Find 102 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCCATTGAATTCAGGATTT+TGG 0.140574 3:+96626197 MsG0380017469.01.T01:CDS
TTAATTATAATTAGGTAATT+AGG 0.197476 3:-96625764 None:intergenic
GATGCTTGTTTAAGATTAAA+AGG 0.235247 3:-96625868 None:intergenic
TTATTTGATTGTTGGATTAA+AGG 0.254252 3:-96625726 None:intergenic
ACCAACAAAGGGGTGAAAAT+AGG 0.255829 3:+96628361 MsG0380017469.01.T01:CDS
GAGAAAGGTTAATTATAATT+AGG 0.260386 3:-96625772 None:intergenic
TGATGGAGCTCGATTATTTA+TGG 0.264035 3:-96626503 None:intergenic
TTTCCCTTCCTTTGCTCCTT+TGG 0.264223 3:+96626350 MsG0380017469.01.T01:CDS
GCGAGTTGGTAAAGCATTAA+TGG 0.264394 3:-96627538 None:intergenic
TCTGAATCTTAGTACATCTT+TGG 0.273210 3:+96628498 MsG0380017469.01.T01:three_prime_UTR
GGTTTCTTTCTTCTACCATT+TGG 0.289844 3:+96625650 MsG0380017469.01.T01:five_prime_UTR
TCAAGGACTGATGATCCTTC+TGG 0.301545 3:+96626412 MsG0380017469.01.T01:CDS
TATTTGATTGTTGGATTAAA+GGG 0.305330 3:-96625725 None:intergenic
TGGATAGTTGGTTATGCTTC+CGG 0.317279 3:+96626319 MsG0380017469.01.T01:CDS
TCTTTCCTTCTCTGTTTGAT+AGG 0.324836 3:+96625582 MsG0380017469.01.T01:five_prime_UTR
AGTAGGAGCCCATTGAATTC+AGG 0.333864 3:+96626190 MsG0380017469.01.T01:CDS
TCTAATTCAACCGCAATTCA+TGG 0.338444 3:+96626445 MsG0380017469.01.T01:CDS
CTTGTATAATATCCACCCTT+GGG 0.347311 3:+96627472 MsG0380017469.01.T01:CDS
CCTTGGGGTCACAGAGGATT+TGG 0.350630 3:+96627488 MsG0380017469.01.T01:CDS
AATTAATCACCCTCGGGTTC+AGG 0.355219 3:+96625840 MsG0380017469.01.T01:five_prime_UTR
CACGATTCCACCTCAATAAC+TGG 0.361890 3:-96627609 None:intergenic
CTTCGAAGGATCATTGTTGA+TGG 0.364274 3:+96626006 MsG0380017469.01.T01:exon
CCATTGTTCGCTTGGATAGT+TGG 0.374335 3:+96626307 MsG0380017469.01.T01:CDS
GTCAATTTCACTCTTGCAAA+GGG 0.378753 3:-96628301 None:intergenic
AGGATCATCAGTCCTTGAAT+TGG 0.392061 3:-96626407 None:intergenic
CCAACAAAGGGGTGAAAATA+GGG 0.399522 3:+96628362 MsG0380017469.01.T01:CDS
CCTTGTATAATATCCACCCT+TGG 0.409208 3:+96627471 MsG0380017469.01.T01:CDS
GAGGAGGCGGGCGGAATAGT+AGG 0.411715 3:+96626173 MsG0380017469.01.T01:CDS
GGATTCAGAGGTTGCGCCTC+GGG 0.411785 3:-96627517 None:intergenic
TGATCCTTCGAAGGAATCAT+TGG 0.417026 3:-96625996 None:intergenic
CACATGCTCCATTGTTCGCT+TGG 0.417150 3:+96626299 MsG0380017469.01.T01:CDS
ATCCAAAATCCTGAATTCAA+TGG 0.419174 3:-96626199 None:intergenic
AGGAAGGGAAACAACGCAAC+CGG 0.434893 3:-96626338 None:intergenic
TCCAAAATCCTGAATTCAAT+GGG 0.440310 3:-96626198 None:intergenic
CAAGGACTGATGATCCTTCT+GGG 0.441742 3:+96626413 MsG0380017469.01.T01:CDS
GTTCATCTCAAACCAATTCA+AGG 0.445319 3:+96626395 MsG0380017469.01.T01:CDS
GCTCCATCACGACCGATGAA+TGG 0.446530 3:+96626517 MsG0380017469.01.T01:CDS
TTTATATTATGACGAGGTAC+TGG 0.449175 3:-96628400 None:intergenic
TTATGTTAATTAATCACCCT+CGG 0.453838 3:+96625833 MsG0380017469.01.T01:five_prime_UTR
CGTCAATTTCACTCTTGCAA+AGG 0.469162 3:-96628302 None:intergenic
TTTCTTACTTTCAGTTGTAT+CGG 0.481743 3:+96627402 MsG0380017469.01.T01:intron
AATTCCAATGATTCCTTCGA+AGG 0.484170 3:+96625992 MsG0380017469.01.T01:five_prime_UTR
TGTTTGATAGGAAGAGATAA+AGG 0.492253 3:+96625594 MsG0380017469.01.T01:five_prime_UTR
AGGAAAATGCCAACCAACAA+AGG 0.499543 3:+96628349 MsG0380017469.01.T01:CDS
TCATCGCCACGACGAGGAGG+CGG 0.501962 3:+96626160 MsG0380017469.01.T01:CDS
GAGGAAGCGGAGGCAACAAC+AGG 0.503324 3:-96626481 None:intergenic
TATTGTTAAGCATAGAATGA+AGG 0.509485 3:-96627436 None:intergenic
GGAAAATGCCAACCAACAAA+GGG 0.510291 3:+96628350 MsG0380017469.01.T01:CDS
AAGCATTCAAAGAATCCAAA+TGG 0.513092 3:-96625665 None:intergenic
CATCGCCACGACGAGGAGGC+GGG 0.518166 3:+96626161 MsG0380017469.01.T01:CDS
TATGTTAATTAATCACCCTC+GGG 0.520374 3:+96625834 MsG0380017469.01.T01:five_prime_UTR
TCGATTATTTATGGAGGAAG+CGG 0.521052 3:-96626494 None:intergenic
CTTCCATTCATCGGTCGTGA+TGG 0.538045 3:-96626520 None:intergenic
CAATTTCACTCTTGCAAAGG+GGG 0.541072 3:-96628299 None:intergenic
TGGATTCAGAGGTTGCGCCT+CGG 0.548851 3:-96627518 None:intergenic
TTGATTGTTGGATTAAAGGG+AGG 0.550966 3:-96625722 None:intergenic
TGACAACACTCCAGTTATTG+AGG 0.550970 3:+96627599 MsG0380017469.01.T01:CDS
ATTGTTAAGCATAGAATGAA+GGG 0.551045 3:-96627435 None:intergenic
TAAAGCATTAATGGATTCAG+AGG 0.555509 3:-96627529 None:intergenic
TAATTAACACAGAAAACACT+TGG 0.555902 3:+96625942 MsG0380017469.01.T01:five_prime_UTR
AGGCAGAGAGAAATGATGAA+TGG 0.557080 3:-96625555 None:intergenic
CCAAGGGTGGATATTATACA+AGG 0.561987 3:-96627471 None:intergenic
ATCATCTTCGCCATGAATTG+CGG 0.562197 3:-96626455 None:intergenic
ATGCTATACCTTCCATTCAT+CGG 0.562259 3:-96626529 None:intergenic
TGTAACAAGACCAATTATTG+AGG 0.565056 3:+96628329 MsG0380017469.01.T01:CDS
ATCGCCAAAGGAGCAAAGGA+AGG 0.565918 3:-96626354 None:intergenic
ACAGAGAGTGCGTAGACAAG+TGG 0.567300 3:+96628256 MsG0380017469.01.T01:CDS
CCAACTATCCAAGCGAACAA+TGG 0.573012 3:-96626307 None:intergenic
CTCTAGCAAAATATCGCCAA+AGG 0.577418 3:-96626366 None:intergenic
CCAAATCCTCTGTGACCCCA+AGG 0.584015 3:-96627488 None:intergenic
CTCTTCCTATCAAACAGAGA+AGG 0.587104 3:-96625587 None:intergenic
AACAGAGAAGGAAAGAGCAA+AGG 0.592326 3:-96625575 None:intergenic
GGTGAAAATAGGGTTGAGAA+TGG 0.596582 3:+96628372 MsG0380017469.01.T01:CDS
CATCACGACCGATGAATGGA+AGG 0.597010 3:+96626521 MsG0380017469.01.T01:CDS
TTCCGCCCGCCTCCTCGTCG+TGG 0.598238 3:-96626166 None:intergenic
CATCAACAATGATCCTTCGA+AGG 0.598930 3:-96626005 None:intergenic
GGGTGGATATTATACAAGGA+AGG 0.602996 3:-96627467 None:intergenic
AAATATCGCCAAAGGAGCAA+AGG 0.611025 3:-96626358 None:intergenic
ATTATTTATGGAGGAAGCGG+AGG 0.613687 3:-96626491 None:intergenic
TCGCCAAAGGAGCAAAGGAA+GGG 0.614448 3:-96626353 None:intergenic
ATGTACTAAGATTCAGACAT+TGG 0.618091 3:-96628492 None:intergenic
CAAGCGAACAATGGAGCATG+TGG 0.618464 3:-96626298 None:intergenic
CGCCACGACGAGGAGGCGGG+CGG 0.618699 3:+96626164 MsG0380017469.01.T01:CDS
CATTCATCATCGCCACGACG+AGG 0.619208 3:+96626154 MsG0380017469.01.T01:CDS
ATCCTCTGTGACCCCAAGGG+TGG 0.626359 3:-96627484 None:intergenic
AAAGGTTATACCTGAACCCG+AGG 0.626570 3:-96625850 None:intergenic
AAGATTCAGACATTGGTCCA+AGG 0.627209 3:-96628485 None:intergenic
TTACACGATGTTGATGATGA+TGG 0.629591 3:+96626100 MsG0380017469.01.T01:CDS
TTAGAAAGAAGTGTCCCAGA+AGG 0.639215 3:-96626427 None:intergenic
CAAATCCTCTGTGACCCCAA+GGG 0.639399 3:-96627487 None:intergenic
TTGTATAATATCCACCCTTG+GGG 0.648305 3:+96627473 MsG0380017469.01.T01:CDS
TCAATTTCACTCTTGCAAAG+GGG 0.652559 3:-96628300 None:intergenic
TGGAGCTCGATTATTTATGG+AGG 0.661196 3:-96626500 None:intergenic
TATTCGTTTATATTATGACG+AGG 0.665128 3:-96628406 None:intergenic
TCATCATCGCCACGACGAGG+AGG 0.668148 3:+96626157 MsG0380017469.01.T01:CDS
TTGCTACATCAATGATGACA+TGG 0.670525 3:-96626042 None:intergenic
ACATCGTGTAATTGATGACG+AGG 0.672057 3:-96626088 None:intergenic
GAGGATTTGGCACAAACCCG+AGG 0.684806 3:+96627501 MsG0380017469.01.T01:CDS
TAATTGATGACGAGGAAGAG+TGG 0.693303 3:-96626080 None:intergenic
ATCCACCCTTGGGGTCACAG+AGG 0.700228 3:+96627482 MsG0380017469.01.T01:CDS
GAAAATGCCAACCAACAAAG+GGG 0.704074 3:+96628351 MsG0380017469.01.T01:CDS
AAGGTTATACCTGAACCCGA+GGG 0.708619 3:-96625849 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATGTAATTAAGAATA+AGG + Chr3:96626869-96626888 MsG0380017469.01.T01:intron 10.0%
!! CAAAAAAAAAAAAAAAAAAG+AGG - Chr3:96625631-96625650 None:intergenic 10.0%
!! TTAATTATAATTAGGTAATT+AGG - Chr3:96625767-96625786 None:intergenic 10.0%
!!! CTCTTTTTTTTTTTTTTTTT+TGG + Chr3:96625629-96625648 MsG0380017469.01.T01:five_prime_UTR 10.0%
!! AAAAAAAAAAAAAAAAGAGG+AGG - Chr3:96625628-96625647 None:intergenic 15.0%
!! ATAATTTAATTCAAATGGAT+TGG + Chr3:96626766-96626785 MsG0380017469.01.T01:intron 15.0%
!! CCATTTGAATTAAATTATTT+AGG - Chr3:96626764-96626783 None:intergenic 15.0%
!! CCTAAATAATTTAATTCAAA+TGG + Chr3:96626761-96626780 MsG0380017469.01.T01:intron 15.0%
!! TCTTTAAATACATTATAGTT+AGG + Chr3:96627737-96627756 MsG0380017469.01.T01:intron 15.0%
!!! ATACATTTTTATTTGATTGT+TGG - Chr3:96625737-96625756 None:intergenic 15.0%
!!! TATCATATATGTCTAATTTT+AGG + Chr3:96627793-96627812 MsG0380017469.01.T01:intron 15.0%
!! ACAAAAGAAAAAACCAAATA+GGG - Chr3:96627072-96627091 None:intergenic 20.0%
!! AGTAAGATGAAAAAACTTTA+TGG + Chr3:96626672-96626691 MsG0380017469.01.T01:intron 20.0%
!! GAGAAAGGTTAATTATAATT+AGG - Chr3:96625775-96625794 None:intergenic 20.0%
!! TATTGCAAAAAACAAATCTA+AGG - Chr3:96627213-96627232 None:intergenic 20.0%
!! TATTTGATTGTTGGATTAAA+GGG - Chr3:96625728-96625747 None:intergenic 20.0%
!! TTAGATCAATTGTCAAATAA+AGG - Chr3:96627765-96627784 None:intergenic 20.0%
!! TTATTTGATTGTTGGATTAA+AGG - Chr3:96625729-96625748 None:intergenic 20.0%
!!! ATTAAGTCTCTTTAACTTTT+TGG - Chr3:96627007-96627026 None:intergenic 20.0%
!!! TAGATTTGTTTTTTGCAATA+TGG + Chr3:96627213-96627232 MsG0380017469.01.T01:intron 20.0%
!!! TTAAGTCTCTTTAACTTTTT+GGG - Chr3:96627006-96627025 None:intergenic 20.0%
!!! TTATACACTTTGCATTTTTA+TGG + Chr3:96628429-96628448 MsG0380017469.01.T01:three_prime_UTR 20.0%
! AAATATAAAGAGTTCCTGAA+AGG - Chr3:96627316-96627335 None:intergenic 25.0%
! ACATAACCTGTAAAACAAAA+AGG - Chr3:96627376-96627395 None:intergenic 25.0%
! ATTGTTAAGCATAGAATGAA+GGG - Chr3:96627438-96627457 None:intergenic 25.0%
! GACAAAAGAAAAAACCAAAT+AGG - Chr3:96627073-96627092 None:intergenic 25.0%
! GATGTTATTGTAACAGAAAA+TGG - Chr3:96627942-96627961 None:intergenic 25.0%
! GGGCTATGATTATAATATTA+TGG - Chr3:96626986-96627005 None:intergenic 25.0%
! TAATTAACACAGAAAACACT+TGG + Chr3:96625942-96625961 MsG0380017469.01.T01:five_prime_UTR 25.0%
! TATACATACCGATACAAATT+AGG - Chr3:96627292-96627311 None:intergenic 25.0%
! TATTCGTTTATATTATGACG+AGG - Chr3:96628409-96628428 None:intergenic 25.0%
! TATTGTTAAGCATAGAATGA+AGG - Chr3:96627439-96627458 None:intergenic 25.0%
! TTATGTTAATTAATCACCCT+CGG + Chr3:96625833-96625852 MsG0380017469.01.T01:five_prime_UTR 25.0%
! TTTCTTACTTTCAGTTGTAT+CGG + Chr3:96627402-96627421 MsG0380017469.01.T01:intron 25.0%
!! CATATATGTCTAATTTTAGG+CGG + Chr3:96627796-96627815 MsG0380017469.01.T01:intron 25.0%
!! GATGCTTGTTTAAGATTAAA+AGG - Chr3:96625871-96625890 None:intergenic 25.0%
AAAAAAAAAAGAGGAGGAAG+TGG - Chr3:96625622-96625641 None:intergenic 30.0%
AAAAAAAAAGAGGAGGAAGT+GGG - Chr3:96625621-96625640 None:intergenic 30.0%
AACCTGTAAAACAAAAAGGA+AGG - Chr3:96627372-96627391 None:intergenic 30.0%
AAGAACTAGCATAAATGTCA+TGG - Chr3:96627721-96627740 None:intergenic 30.0%
AAGCATTCAAAGAATCCAAA+TGG - Chr3:96625668-96625687 None:intergenic 30.0%
AGACTTAATAATCCATCTGA+AGG + Chr3:96627018-96627037 MsG0380017469.01.T01:intron 30.0%
ATCCAAAATCCTGAATTCAA+TGG - Chr3:96626202-96626221 None:intergenic 30.0%
ATGCCCAAAACGTTATAATT+TGG - Chr3:96626837-96626856 None:intergenic 30.0%
ATGTACTAAGATTCAGACAT+TGG - Chr3:96628495-96628514 None:intergenic 30.0%
CTTAAATTGTTTCCTTCAGA+TGG - Chr3:96627033-96627052 None:intergenic 30.0%
CTTGTAGAAACTTGACAATT+AGG - Chr3:96628012-96628031 None:intergenic 30.0%
GTATGTTGAATTTCCCTATT+TGG + Chr3:96627056-96627075 MsG0380017469.01.T01:intron 30.0%
TATGTTAATTAATCACCCTC+GGG + Chr3:96625834-96625853 MsG0380017469.01.T01:five_prime_UTR 30.0%
TCCAAAATCCTGAATTCAAT+GGG - Chr3:96626201-96626220 None:intergenic 30.0%
TGCAAAAAACAAATCTAAGG+CGG - Chr3:96627210-96627229 None:intergenic 30.0%
TGCCCAAAACGTTATAATTT+GGG - Chr3:96626836-96626855 None:intergenic 30.0%
TGTAACAAGACCAATTATTG+AGG + Chr3:96628329-96628348 MsG0380017469.01.T01:CDS 30.0%
TGTTTGATAGGAAGAGATAA+AGG + Chr3:96625594-96625613 MsG0380017469.01.T01:five_prime_UTR 30.0%
TTTATATTATGACGAGGTAC+TGG - Chr3:96628403-96628422 None:intergenic 30.0%
! AGACTTTTTGTGTATTTGTG+TGG + Chr3:96626945-96626964 MsG0380017469.01.T01:intron 30.0%
! ATGATGCTCCTAATTTGTAT+CGG + Chr3:96627281-96627300 MsG0380017469.01.T01:intron 30.0%
! GCATTATTGTTGTTGTTCTT+TGG + Chr3:96626548-96626567 MsG0380017469.01.T01:intron 30.0%
! GTCCCAAATTATAACGTTTT+GGG + Chr3:96626831-96626850 MsG0380017469.01.T01:intron 30.0%
! TAATTTGTGTGTTTGTGTTC+AGG + Chr3:96628161-96628180 MsG0380017469.01.T01:intron 30.0%
! TACATCACTGTATGCATTTT+AGG + Chr3:96628050-96628069 MsG0380017469.01.T01:intron 30.0%
! TGTCCCAAATTATAACGTTT+TGG + Chr3:96626830-96626849 MsG0380017469.01.T01:intron 30.0%
! TGTTTGATGAGTTTTTCTAC+CGG + Chr3:96628118-96628137 MsG0380017469.01.T01:intron 30.0%
! TTGGCATTTTCCTCAATAAT+TGG - Chr3:96628342-96628361 None:intergenic 30.0%
! TTTTGTGTATTTGTGTGGTA+AGG + Chr3:96626950-96626969 MsG0380017469.01.T01:intron 30.0%
!! ATACAAATTAGGAGCATCAT+TGG - Chr3:96627281-96627300 None:intergenic 30.0%
!! TAAAGCATTAATGGATTCAG+AGG - Chr3:96627532-96627551 None:intergenic 30.0%
!!! TTTTGCAATATGGTTTGTTG+TGG + Chr3:96627223-96627242 MsG0380017469.01.T01:intron 30.0%
AAAAAAAAGAGGAGGAAGTG+GGG - Chr3:96625620-96625639 None:intergenic 35.0%
AAGTATTCCATGAGTAGCTT+CGG - Chr3:96627182-96627201 None:intergenic 35.0%
AATAATATCACAGTCATCGC+CGG - Chr3:96628140-96628159 None:intergenic 35.0%
AATTCCAATGATTCCTTCGA+AGG + Chr3:96625992-96626011 MsG0380017469.01.T01:five_prime_UTR 35.0%
ATGCTATACCTTCCATTCAT+CGG - Chr3:96626532-96626551 None:intergenic 35.0%
ATTGGTCCAAGGAAAAAAGT+GGG - Chr3:96628477-96628496 None:intergenic 35.0%
CTGTGAAAAAGATGTGAACA+TGG - Chr3:96628240-96628259 None:intergenic 35.0%
CTGTTACAATAACATCAAGC+TGG + Chr3:96627946-96627965 MsG0380017469.01.T01:intron 35.0%
CTTGTATAATATCCACCCTT+GGG + Chr3:96627472-96627491 MsG0380017469.01.T01:CDS 35.0%
GCTAATTTGACAAGCTATTC+TGG + Chr3:96626637-96626656 MsG0380017469.01.T01:intron 35.0%
GGTTTCTTTCTTCTACCATT+TGG + Chr3:96625650-96625669 MsG0380017469.01.T01:five_prime_UTR 35.0%
GTCAATTTCACTCTTGCAAA+GGG - Chr3:96628304-96628323 None:intergenic 35.0%
GTTCATCTCAAACCAATTCA+AGG + Chr3:96626395-96626414 MsG0380017469.01.T01:CDS 35.0%
TCAATTTCACTCTTGCAAAG+GGG - Chr3:96628303-96628322 None:intergenic 35.0%
TCGATTATTTATGGAGGAAG+CGG - Chr3:96626497-96626516 None:intergenic 35.0%
TCTAATTCAACCGCAATTCA+TGG + Chr3:96626445-96626464 MsG0380017469.01.T01:CDS 35.0%
TCTTTCCTTCTCTGTTTGAT+AGG + Chr3:96625582-96625601 MsG0380017469.01.T01:five_prime_UTR 35.0%
TGATGGAGCTCGATTATTTA+TGG - Chr3:96626506-96626525 None:intergenic 35.0%
TTGATTGTTGGATTAAAGGG+AGG - Chr3:96625725-96625744 None:intergenic 35.0%
TTGCTACATCAATGATGACA+TGG - Chr3:96626045-96626064 None:intergenic 35.0%
TTGTATAATATCCACCCTTG+GGG + Chr3:96627473-96627492 MsG0380017469.01.T01:CDS 35.0%
! TGTGGAAATGTGTGGATTTT+TGG + Chr3:96627241-96627260 MsG0380017469.01.T01:intron 35.0%
! TGTTGTTCTTTGGACTTGTT+TGG + Chr3:96626558-96626577 MsG0380017469.01.T01:intron 35.0%
!! ATCGTTTTGAATATGCGAGT+TGG - Chr3:96627555-96627574 None:intergenic 35.0%
!! TTACACGATGTTGATGATGA+TGG + Chr3:96626100-96626119 MsG0380017469.01.T01:CDS 35.0%
!!! CTCCTTCCTTTTTGTTTTAC+AGG + Chr3:96627367-96627386 MsG0380017469.01.T01:intron 35.0%
AAAAAAGTGGGCAAACAGGA+TGG - Chr3:96628465-96628484 None:intergenic 40.0%
AAATATCGCCAAAGGAGCAA+AGG - Chr3:96626361-96626380 None:intergenic 40.0%
AACAGAGAAGGAAAGAGCAA+AGG - Chr3:96625578-96625597 None:intergenic 40.0%
AAGATTCAGACATTGGTCCA+AGG - Chr3:96628488-96628507 None:intergenic 40.0%
AAGGAAAAAAGTGGGCAAAC+AGG - Chr3:96628469-96628488 None:intergenic 40.0%
ACAGAAAATGGCTTGATGCT+CGG - Chr3:96627930-96627949 None:intergenic 40.0%
ACCAACAAAGGGGTGAAAAT+AGG + Chr3:96628361-96628380 MsG0380017469.01.T01:CDS 40.0%
AGGAAAATGCCAACCAACAA+AGG + Chr3:96628349-96628368 MsG0380017469.01.T01:CDS 40.0%
AGGATCATCAGTCCTTGAAT+TGG - Chr3:96626410-96626429 None:intergenic 40.0%
ATCATCTTCGCCATGAATTG+CGG - Chr3:96626458-96626477 None:intergenic 40.0%
ATCGGTATGTATAGCCTTTC+AGG + Chr3:96627299-96627318 MsG0380017469.01.T01:intron 40.0%
ATTATTTATGGAGGAAGCGG+AGG - Chr3:96626494-96626513 None:intergenic 40.0%
CAATTTCACTCTTGCAAAGG+GGG - Chr3:96628302-96628321 None:intergenic 40.0%
CATCAACAATGATCCTTCGA+AGG - Chr3:96626008-96626027 None:intergenic 40.0%
CATTGGTCCAAGGAAAAAAG+TGG - Chr3:96628478-96628497 None:intergenic 40.0%
CCAACAAAGGGGTGAAAATA+GGG + Chr3:96628362-96628381 MsG0380017469.01.T01:CDS 40.0%
CCAAGGGTGGATATTATACA+AGG - Chr3:96627474-96627493 None:intergenic 40.0%
CCTTGTATAATATCCACCCT+TGG + Chr3:96627471-96627490 MsG0380017469.01.T01:CDS 40.0%
CGTCAATTTCACTCTTGCAA+AGG - Chr3:96628305-96628324 None:intergenic 40.0%
CTCTAGCAAAATATCGCCAA+AGG - Chr3:96626369-96626388 None:intergenic 40.0%
CTCTTCCTATCAAACAGAGA+AGG - Chr3:96625590-96625609 None:intergenic 40.0%
CTTCGAAGGATCATTGTTGA+TGG + Chr3:96626006-96626025 MsG0380017469.01.T01:exon 40.0%
GAAAAGGAACACATGATCTC+TGG + Chr3:96627644-96627663 MsG0380017469.01.T01:intron 40.0%
GAAAATGCCAACCAACAAAG+GGG + Chr3:96628351-96628370 MsG0380017469.01.T01:CDS 40.0%
GGAAAATGCCAACCAACAAA+GGG + Chr3:96628350-96628369 MsG0380017469.01.T01:CDS 40.0%
GGGTGGATATTATACAAGGA+AGG - Chr3:96627470-96627489 None:intergenic 40.0%
GGTGAAAATAGGGTTGAGAA+TGG + Chr3:96628372-96628391 MsG0380017469.01.T01:CDS 40.0%
TCGGTCTGCTAATTAAACGA+GGG - Chr3:96627163-96627182 None:intergenic 40.0%
TGACAACACTCCAGTTATTG+AGG + Chr3:96627599-96627618 MsG0380017469.01.T01:CDS 40.0%
TGATCCTTCGAAGGAATCAT+TGG - Chr3:96625999-96626018 None:intergenic 40.0%
TGGAGCTCGATTATTTATGG+AGG - Chr3:96626503-96626522 None:intergenic 40.0%
TGGATAGTTGGTTATGCTTC+CGG + Chr3:96626319-96626338 MsG0380017469.01.T01:CDS 40.0%
TTCGGTCTGCTAATTAAACG+AGG - Chr3:96627164-96627183 None:intergenic 40.0%
! ATTTTCACCCCTTTGTTGGT+TGG - Chr3:96628361-96628380 None:intergenic 40.0%
! GCCCATTGAATTCAGGATTT+TGG + Chr3:96626197-96626216 MsG0380017469.01.T01:CDS 40.0%
!! ACATCGTGTAATTGATGACG+AGG - Chr3:96626091-96626110 None:intergenic 40.0%
!! CAAATTAGGAGCATCATTGG+CGG - Chr3:96627278-96627297 None:intergenic 40.0%
!! GCGAGTTGGTAAAGCATTAA+TGG - Chr3:96627541-96627560 None:intergenic 40.0%
!! GGAAATGTGTGGATTTTTGG+AGG + Chr3:96627244-96627263 MsG0380017469.01.T01:intron 40.0%
!! TAATTGATGACGAGGAAGAG+TGG - Chr3:96626083-96626102 None:intergenic 40.0%
!! TGGTTTGTTGTGGAAATGTG+TGG + Chr3:96627233-96627252 MsG0380017469.01.T01:intron 40.0%
!! TTAGAAAGAAGTGTCCCAGA+AGG - Chr3:96626430-96626449 None:intergenic 40.0%
!!! TGTTTGCCCACTTTTTTCCT+TGG + Chr3:96628468-96628487 MsG0380017469.01.T01:three_prime_UTR 40.0%
AAAGGTTATACCTGAACCCG+AGG - Chr3:96625853-96625872 None:intergenic 45.0%
AAGGTTATACCTGAACCCGA+GGG - Chr3:96625852-96625871 None:intergenic 45.0%
AATTAATCACCCTCGGGTTC+AGG + Chr3:96625840-96625859 MsG0380017469.01.T01:five_prime_UTR 45.0%
AGAGAGAGAGAGAGAGAGAA+AGG - Chr3:96625790-96625809 None:intergenic 45.0%
AGTAGGAGCCCATTGAATTC+AGG + Chr3:96626190-96626209 MsG0380017469.01.T01:CDS 45.0%
CAACACTCCAGTTATTGAGG+TGG + Chr3:96627602-96627621 MsG0380017469.01.T01:intron 45.0%
CAAGGACTGATGATCCTTCT+GGG + Chr3:96626413-96626432 MsG0380017469.01.T01:CDS 45.0%
CACGATTCCACCTCAATAAC+TGG - Chr3:96627612-96627631 None:intergenic 45.0%
CAGTTATTGAGGTGGAATCG+TGG + Chr3:96627610-96627629 MsG0380017469.01.T01:intron 45.0%
CCAACTATCCAAGCGAACAA+TGG - Chr3:96626310-96626329 None:intergenic 45.0%
CCATTGTTCGCTTGGATAGT+TGG + Chr3:96626307-96626326 MsG0380017469.01.T01:CDS 45.0%
TCAAGGACTGATGATCCTTC+TGG + Chr3:96626412-96626431 MsG0380017469.01.T01:CDS 45.0%
TTTCCCTTCCTTTGCTCCTT+TGG + Chr3:96626350-96626369 MsG0380017469.01.T01:CDS 45.0%
! CCCTATTTTCACCCCTTTGT+TGG - Chr3:96628365-96628384 None:intergenic 45.0%
AGGAAGGGAAACAACGCAAC+CGG - Chr3:96626341-96626360 None:intergenic 50.0%
ATCGCCAAAGGAGCAAAGGA+AGG - Chr3:96626357-96626376 None:intergenic 50.0%
CAAATCCTCTGTGACCCCAA+GGG - Chr3:96627490-96627509 None:intergenic 50.0%
CAAGCGAACAATGGAGCATG+TGG - Chr3:96626301-96626320 None:intergenic 50.0%
CACATGCTCCATTGTTCGCT+TGG + Chr3:96626299-96626318 MsG0380017469.01.T01:CDS 50.0%
CATCACGACCGATGAATGGA+AGG + Chr3:96626521-96626540 MsG0380017469.01.T01:CDS 50.0%
CGTGGCTGAAGGAACTGAAA+AGG + Chr3:96627628-96627647 MsG0380017469.01.T01:intron 50.0%
CTTCCATTCATCGGTCGTGA+TGG - Chr3:96626523-96626542 None:intergenic 50.0%
TAGCAGACCGAAGCTACTCA+TGG + Chr3:96627172-96627191 MsG0380017469.01.T01:intron 50.0%
TCGCCAAAGGAGCAAAGGAA+GGG - Chr3:96626356-96626375 None:intergenic 50.0%
! ACAGAGAGTGCGTAGACAAG+TGG + Chr3:96628256-96628275 MsG0380017469.01.T01:CDS 50.0%
CATTCATCATCGCCACGACG+AGG + Chr3:96626154-96626173 MsG0380017469.01.T01:CDS 55.0%
CCAAATCCTCTGTGACCCCA+AGG - Chr3:96627491-96627510 None:intergenic 55.0%
CCTTGGGGTCACAGAGGATT+TGG + Chr3:96627488-96627507 MsG0380017469.01.T01:CDS 55.0%
GAGGATTTGGCACAAACCCG+AGG + Chr3:96627501-96627520 MsG0380017469.01.T01:CDS 55.0%
GCTCCATCACGACCGATGAA+TGG + Chr3:96626517-96626536 MsG0380017469.01.T01:CDS 55.0%
TGAGGTGGAATCGTGGCTGA+AGG + Chr3:96627617-96627636 MsG0380017469.01.T01:intron 55.0%
TGGATTCAGAGGTTGCGCCT+CGG - Chr3:96627521-96627540 None:intergenic 55.0%
ATCCACCCTTGGGGTCACAG+AGG + Chr3:96627482-96627501 MsG0380017469.01.T01:CDS 60.0%
ATCCTCTGTGACCCCAAGGG+TGG - Chr3:96627487-96627506 None:intergenic 60.0%
GAGGAAGCGGAGGCAACAAC+AGG - Chr3:96626484-96626503 None:intergenic 60.0%
GGATTCAGAGGTTGCGCCTC+GGG - Chr3:96627520-96627539 None:intergenic 60.0%
TCATCATCGCCACGACGAGG+AGG + Chr3:96626157-96626176 MsG0380017469.01.T01:CDS 60.0%
GAGGAGGCGGGCGGAATAGT+AGG + Chr3:96626173-96626192 MsG0380017469.01.T01:CDS 65.0%
TCATCGCCACGACGAGGAGG+CGG + Chr3:96626160-96626179 MsG0380017469.01.T01:CDS 65.0%
CATCGCCACGACGAGGAGGC+GGG + Chr3:96626161-96626180 MsG0380017469.01.T01:CDS 70.0%
TTCCGCCCGCCTCCTCGTCG+TGG - Chr3:96626169-96626188 None:intergenic 75.0%
! CGCCACGACGAGGAGGCGGG+CGG + Chr3:96626164-96626183 MsG0380017469.01.T01:CDS 80.0%
Chromosome Type Strat End Strand Name
Chr3 gene 96625557 96628519 96625557 ID=MsG0380017469.01;Name=MsG0380017469.01
Chr3 mRNA 96625557 96628519 96625557 ID=MsG0380017469.01.T01;Parent=MsG0380017469.01;Name=MsG0380017469.01.T01;_AED=0.48;_eAED=0.48;_QI=468|0|0.66|1|1|1|3|103|318
Chr3 exon 96625557 96626542 96625557 ID=MsG0380017469.01.T01:exon:27037;Parent=MsG0380017469.01.T01
Chr3 exon 96627416 96627620 96627416 ID=MsG0380017469.01.T01:exon:27038;Parent=MsG0380017469.01.T01
Chr3 exon 96628183 96628519 96628183 ID=MsG0380017469.01.T01:exon:27039;Parent=MsG0380017469.01.T01
Chr3 five_prime_UTR 96625557 96626024 96625557 ID=MsG0380017469.01.T01:five_prime_utr;Parent=MsG0380017469.01.T01
Chr3 CDS 96626025 96626542 96626025 ID=MsG0380017469.01.T01:cds;Parent=MsG0380017469.01.T01
Chr3 CDS 96627416 96627620 96627416 ID=MsG0380017469.01.T01:cds;Parent=MsG0380017469.01.T01
Chr3 CDS 96628183 96628416 96628183 ID=MsG0380017469.01.T01:cds;Parent=MsG0380017469.01.T01
Chr3 three_prime_UTR 96628417 96628519 96628417 ID=MsG0380017469.01.T01:three_prime_utr;Parent=MsG0380017469.01.T01
Gene Sequence

>MsG0380017469.01.T01

ATGGCAAACAATACTCACCATGTCATCATTGATGTAGCAACAACTTCTGAAACAACCACTCTTCCTCGTCATCAATTACACGATGTTGATGATGATGGTAGATTGCGTGTTTCACTTCAAACTTCAAATCATTCATCATCGCCACGACGAGGAGGCGGGCGGAATAGTAGGAGCCCATTGAATTCAGGATTTTGGATTTCTTTTGAATTTATTTTCACATTATCTCAAATTATTGCTTCTGTTATTGTTCTTAATTCATCAAGAGATGAGCATCCACATGCTCCATTGTTCGCTTGGATAGTTGGTTATGCTTCCGGTTGCGTTGTTTCCCTTCCTTTGCTCCTTTGGCGATATTTTGCTAGAGAGCAAAGTTCATCTCAAACCAATTCAAGGACTGATGATCCTTCTGGGACACTTCTTTCTAATTCAACCGCAATTCATGGCGAAGATGATGTTCCTGTTGTTGCCTCCGCTTCCTCCATAAATAATCGAGCTCCATCACGACCGATGAATGGAAGTTGTATCGGTTACGCAATGCCCTTCATTCTATGCTTAACAATATGTTGTTGCCTTCCTTGTATAATATCCACCCTTGGGGTCACAGAGGATTTGGCACAAACCCGAGGCGCAACCTCTGAATCCATTAATGCTTTACCAACTCGCATATTCAAAACGATGAAAAGTAAAACTAATGATGAATCTGACAACACTCCAGTTATTGAGGTTTGCTGCATATGCATAGCAAACTATGAAAACGACGATGAGTTAAGAGAGTTACCATGTTCACATCTTTTTCACAGAGAGTGCGTAGACAAGTGGTTGAAGATAAATGCATTATGCCCCCTTTGCAAGAGTGAAATTGACGAGAATGTAACAAGACCAATTATTGAGGAAAATGCCAACCAACAAAGGGGTGAAAATAGGGTTGAGAATGGTCTTGCCAGTACCTCGTCATAA
Protein sequence

>MsG0380017469.01.T01

MANNTHHVIIDVATTSETTTLPRHQLHDVDDDGRLRVSLQTSNHSSSPRRGGGRNSRSPLNSGFWISFEFIFTLSQIIASVIVLNSSRDEHPHAPLFAWIVGYASGCVVSLPLLLWRYFAREQSSSQTNSRTDDPSGTLLSNSTAIHGEDDVPVVASASSINNRAPSRPMNGSCIGYAMPFILCLTICCCLPCIISTLGVTEDLAQTRGATSESINALPTRIFKTMKSKTNDESDNTPVIEVCCICIANYENDDELRELPCSHLFHRECVDKWLKINALCPLCKSEIDENVTRPIIEENANQQRGENRVENGLASTSS*