AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017554.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017554.01.T01 MTR_3g108990 74.859 354 54 3 1 320 1 353 0.0 511
MsG0380017554.01.T01 MTR_3g109010 59.943 352 105 5 4 320 6 356 7.01e-143 409
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017554.01.T01 AT2G24580 52.101 357 132 4 2 320 5 360 1.21e-121 356

Find 104 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTCAACTTACCGGAAAA+TGG 0.208207 3:-97823122 MsG0380017554.01.T01:CDS
GAATGGGTTGAAGGTATATT+TGG 0.252986 3:-97822620 MsG0380017554.01.T01:CDS
TTTGGTAAGGTTTATGTATA+CGG 0.258322 3:-97822755 MsG0380017554.01.T01:CDS
TTTAAGATGGCTCCGGTTAT+TGG 0.277339 3:-97822456 MsG0380017554.01.T01:CDS
GAACCCCACGGTCTCTTATC+AGG 0.277612 3:+97822668 None:intergenic
TGGAGACTCATGTTTGTTAC+TGG 0.314415 3:-97822844 MsG0380017554.01.T01:CDS
CTTGCTGGTGGTTGAGGAGC+TGG 0.325773 3:+97823165 None:intergenic
CGAATTTGTCGGCAACTTGC+TGG 0.334129 3:+97823150 None:intergenic
TGTGATGATGAATGAGTTAA+AGG 0.351791 3:-97822642 MsG0380017554.01.T01:CDS
CATGAAGGTAAATTCGTAAT+TGG 0.356936 3:-97822806 MsG0380017554.01.T01:CDS
CGCCGGCAAATTCAACTTAC+CGG 0.363257 3:-97823129 MsG0380017554.01.T01:CDS
AATAAGTTAGTTAAAAGAAT+TGG 0.363920 3:-97822893 MsG0380017554.01.T01:CDS
TGTATACGGAACACCCGTTC+TGG 0.367868 3:-97822741 MsG0380017554.01.T01:CDS
TTCCGGTAAGTTGAATTTGC+CGG 0.375242 3:+97823127 None:intergenic
GTCAATATCTTACCAATAAC+CGG 0.400144 3:+97822444 None:intergenic
ATGGGCCCATGTCAAGGTGC+TGG 0.401428 3:+97823244 None:intergenic
TCAAAACCATTACTACCCTT+TGG 0.419758 3:-97823333 MsG0380017554.01.T01:CDS
TTCGGGTCATGGGTTTAAGA+TGG 0.432502 3:-97822469 MsG0380017554.01.T01:CDS
CGCTTACCAAGCTGCCAAAA+GGG 0.435208 3:-97823447 MsG0380017554.01.T01:CDS
AGGATGACTGGGTCGTTGAA+TGG 0.439447 3:+97823225 None:intergenic
CCGCTTACCAAGCTGCCAAA+AGG 0.442223 3:-97823448 MsG0380017554.01.T01:CDS
TTGATGAAAGCGGCGGTTCA+CGG 0.442976 3:-97822707 MsG0380017554.01.T01:CDS
TGATAAGAGACCGTGGGGTT+CGG 0.446371 3:-97822666 MsG0380017554.01.T01:CDS
TCAATCACAAAATCCTCATC+TGG 0.453932 3:+97822539 None:intergenic
GCTGGTGGTTGAGGAGCTGG+TGG 0.457134 3:+97823168 None:intergenic
GAATTTGCCGGCGAATTTGT+CGG 0.465102 3:+97823139 None:intergenic
CGGCAACTTGCTGGTGGTTG+AGG 0.471524 3:+97823159 None:intergenic
AATTCAACTTACCGGAAAAT+GGG 0.471808 3:-97823121 MsG0380017554.01.T01:intron
GGATGACTGGGTCGTTGAAT+GGG 0.476633 3:+97823226 None:intergenic
CCATCACCAAAGGGTAGTAA+TGG 0.479104 3:+97823327 None:intergenic
CTGGTGGTTGAGGAGCTGGT+GGG 0.479799 3:+97823169 None:intergenic
CAGTTTGATGTGATTATCGT+CGG 0.485107 3:-97823494 MsG0380017554.01.T01:CDS
TGGGCCCATGTCAAGGTGCT+GGG 0.488184 3:+97823245 None:intergenic
AAACCAGGATACTCCAGAAC+GGG 0.488893 3:+97822728 None:intergenic
TCGATAACGGAAAGGATGAC+TGG 0.499509 3:+97823213 None:intergenic
CACCACCGTGGCTCTTCCCA+CGG 0.500105 3:-97823386 MsG0380017554.01.T01:CDS
GAGTTAAAGGAATGGGTTGA+AGG 0.505787 3:-97822629 MsG0380017554.01.T01:CDS
AATAAACGTCGTAGCCCACT+TGG 0.507960 3:+97823274 None:intergenic
ACAAACTTGGAAAGAAGCTC+AGG 0.508961 3:-97823298 MsG0380017554.01.T01:CDS
ATCGTCGGAGCCGGCGTCAT+GGG 0.511916 3:-97823479 MsG0380017554.01.T01:CDS
CCATTACTACCCTTTGGTGA+TGG 0.515191 3:-97823327 MsG0380017554.01.T01:CDS
TGTTACTGGAGGATTAAAGA+AGG 0.516115 3:-97822830 MsG0380017554.01.T01:CDS
CAAAGCCCAGCACCTTGACA+TGG 0.516206 3:-97823250 MsG0380017554.01.T01:CDS
GTGATGGAATCATACAAACT+TGG 0.525102 3:-97823311 MsG0380017554.01.T01:CDS
CGTGGGAAGAGCCACGGTGG+TGG 0.526610 3:+97823387 None:intergenic
GATGTGATTATCGTCGGAGC+CGG 0.528057 3:-97823488 MsG0380017554.01.T01:CDS
TATCGTCGGAGCCGGCGTCA+TGG 0.528247 3:-97823480 MsG0380017554.01.T01:CDS
GGGTTGAAGGTATATTTGGT+GGG 0.530189 3:-97822616 MsG0380017554.01.T01:CDS
ACACCCGTTCTGGAGTATCC+TGG 0.533689 3:-97822731 MsG0380017554.01.T01:CDS
TCATGGGTTTAAGATGGCTC+CGG 0.534121 3:-97822463 MsG0380017554.01.T01:CDS
CGTTGAATGGGCCCATGTCA+AGG 0.534705 3:+97823238 None:intergenic
GAAGGTAAATTCGTAATTGG+TGG 0.537982 3:-97822803 MsG0380017554.01.T01:CDS
ATAGGTAGCACGAATGGTGC+GGG 0.538731 3:+97823358 None:intergenic
AAGTTAGTTAAAAGAATTGG+CGG 0.543718 3:-97822890 MsG0380017554.01.T01:CDS
ATGCAAGATTGTTTCACCAC+TGG 0.544545 3:+97822575 None:intergenic
AAGCGGCGGTTCACGGTGGT+CGG 0.560174 3:-97822700 MsG0380017554.01.T01:CDS
GATGAATGAGTTAAAGGAAT+GGG 0.561000 3:-97822636 MsG0380017554.01.T01:CDS
TGTATGATTCCATCACCAAA+GGG 0.565360 3:+97823318 None:intergenic
TGGTGGTTGAGGAGCTGGTG+GGG 0.569538 3:+97823170 None:intergenic
TTGTATGATTCCATCACCAA+AGG 0.570668 3:+97823317 None:intergenic
GTTACTGGAGGATTAAAGAA+GGG 0.571143 3:-97822829 MsG0380017554.01.T01:CDS
TTTCCGTTATCGAAAACTGC+CGG 0.577492 3:-97823203 MsG0380017554.01.T01:CDS
TTTGGCAGCTTGGTAAGCGG+TGG 0.578304 3:+97823451 None:intergenic
CGATAACGGAAAGGATGACT+GGG 0.583598 3:+97823214 None:intergenic
AGACTCATGTTTGTTACTGG+AGG 0.585228 3:-97822841 MsG0380017554.01.T01:CDS
AACCCCACGGTCTCTTATCA+GGG 0.589215 3:+97822669 None:intergenic
GGTTGAAGGTATATTTGGTG+GGG 0.591110 3:-97822615 MsG0380017554.01.T01:CDS
GAAAGACAACACAAAGGTGA+CGG 0.591577 3:-97823007 MsG0380017554.01.T01:intron
CGTGGTAACTGTTGGAGCGT+GGG 0.592036 3:-97822918 MsG0380017554.01.T01:CDS
CAAGTTGCCGACAAATTCGC+CGG 0.592904 3:-97823146 MsG0380017554.01.T01:CDS
TGGGTTGAAGGTATATTTGG+TGG 0.596963 3:-97822617 MsG0380017554.01.T01:CDS
TTGAATATAGGTAGCACGAA+TGG 0.600981 3:+97823352 None:intergenic
AGGATTAAAGAAGGGCATGA+AGG 0.601588 3:-97822821 MsG0380017554.01.T01:CDS
AAAGCCCAGCACCTTGACAT+GGG 0.605253 3:-97823249 MsG0380017554.01.T01:CDS
GAAAGAAGCTCAGGCCCAAG+TGG 0.608632 3:-97823289 MsG0380017554.01.T01:CDS
GCGAATGGTGAAAAGTTTCG+CGG 0.614581 3:-97822950 MsG0380017554.01.T01:CDS
TATAGGTAGCACGAATGGTG+CGG 0.617133 3:+97823357 None:intergenic
ATTTGTCGGCAACTTGCTGG+TGG 0.619796 3:+97823153 None:intergenic
GTAACAAACATGAGTCTCCA+CGG 0.623803 3:+97822847 None:intergenic
ATCAAACTGAGAATCCTCCA+TGG 0.630391 3:+97823508 None:intergenic
GCTTACCAAGCTGCCAAAAG+GGG 0.635400 3:-97823446 MsG0380017554.01.T01:CDS
GTATCCTGGTTTGATGAAAG+CGG 0.638868 3:-97822717 MsG0380017554.01.T01:CDS
TAACAAACATGAGTCTCCAC+GGG 0.640451 3:+97822848 None:intergenic
GCGTGGTAACTGTTGGAGCG+TGG 0.640546 3:-97822919 MsG0380017554.01.T01:CDS
TCCTGGTTTGATGAAAGCGG+CGG 0.643170 3:-97822714 MsG0380017554.01.T01:CDS
AATGGTGCGGGATTCACCGT+GGG 0.647649 3:+97823370 None:intergenic
TGATGAATGAGTTAAAGGAA+TGG 0.652223 3:-97822637 MsG0380017554.01.T01:CDS
TGTTGATTCAAGTGAGCCAG+TGG 0.653308 3:-97822591 MsG0380017554.01.T01:CDS
ATAAACGTCGTAGCCCACTT+GGG 0.656688 3:+97823275 None:intergenic
ATTCACCGTGGGAAGAGCCA+CGG 0.656819 3:+97823381 None:intergenic
TGACCCTGATAAGAGACCGT+GGG 0.660404 3:-97822672 MsG0380017554.01.T01:CDS
ACCGCCGCTTTCATCAAACC+AGG 0.661511 3:+97822713 None:intergenic
GTATTCAATGACACCAGATG+AGG 0.662964 3:-97822552 MsG0380017554.01.T01:CDS
TGAAATTCCGATAAAACCCG+TGG 0.665272 3:-97822864 MsG0380017554.01.T01:CDS
ATCATCACAACCGAACCCCA+CGG 0.667993 3:+97822656 None:intergenic
AAAGAAGCTCAGGCCCAAGT+GGG 0.673586 3:-97823288 MsG0380017554.01.T01:CDS
GAATGGTGCGGGATTCACCG+TGG 0.676672 3:+97823369 None:intergenic
GGTGGAACTTCCCATGACGC+CGG 0.677539 3:+97823469 None:intergenic
CACCGTGGGAAGAGCCACGG+TGG 0.685084 3:+97823384 None:intergenic
CAAACCAGGATACTCCAGAA+CGG 0.691879 3:+97822727 None:intergenic
GACCCTGATAAGAGACCGTG+GGG 0.710999 3:-97822671 MsG0380017554.01.T01:CDS
ATGAAAGCGGCGGTTCACGG+TGG 0.717613 3:-97822704 MsG0380017554.01.T01:CDS
GTGACCCTGATAAGAGACCG+TGG 0.727740 3:-97822673 MsG0380017554.01.T01:CDS
TTTGACTTTCTCCACCACCG+TGG 0.727973 3:-97823398 MsG0380017554.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAGTTAGTTAAAAGAAT+TGG - Chr3:97823058-97823077 MsG0380017554.01.T01:intron 15.0%
!!! GATTTTGTGATTGATTTTTT+GGG - Chr3:97823421-97823440 MsG0380017554.01.T01:CDS 20.0%
! AAGTTAGTTAAAAGAATTGG+CGG - Chr3:97823061-97823080 MsG0380017554.01.T01:intron 25.0%
! TTTGGTAAGGTTTATGTATA+CGG - Chr3:97823196-97823215 MsG0380017554.01.T01:CDS 25.0%
!! TTTGGAAAAAATGTGGTTTT+GGG - Chr3:97823451-97823470 MsG0380017554.01.T01:CDS 25.0%
!!! GGATTTTGTGATTGATTTTT+TGG - Chr3:97823420-97823439 MsG0380017554.01.T01:CDS 25.0%
!!! GTAGTAATGGTTTTGAATAT+AGG + Chr3:97822614-97822633 None:intergenic 25.0%
AAATTCAACTTACCGGAAAA+TGG - Chr3:97822829-97822848 MsG0380017554.01.T01:CDS 30.0%
AATTCAACTTACCGGAAAAT+GGG - Chr3:97822830-97822849 MsG0380017554.01.T01:CDS 30.0%
CATGAAGGTAAATTCGTAAT+TGG - Chr3:97823145-97823164 MsG0380017554.01.T01:CDS 30.0%
GATGAATGAGTTAAAGGAAT+GGG - Chr3:97823315-97823334 MsG0380017554.01.T01:CDS 30.0%
TGATGAATGAGTTAAAGGAA+TGG - Chr3:97823314-97823333 MsG0380017554.01.T01:CDS 30.0%
! GTTTGGAAAAAATGTGGTTT+TGG - Chr3:97823450-97823469 MsG0380017554.01.T01:CDS 30.0%
! TGTGATGATGAATGAGTTAA+AGG - Chr3:97823309-97823328 MsG0380017554.01.T01:CDS 30.0%
!!! TGTTTTGAAAGACAACACAA+AGG - Chr3:97822938-97822957 MsG0380017554.01.T01:CDS 30.0%
!!! TTTGTGATTGATTTTTTGGG+TGG - Chr3:97823424-97823443 MsG0380017554.01.T01:CDS 30.0%
!!! TTTTGCTAGCTTTTTTGGTA+AGG - Chr3:97823183-97823202 MsG0380017554.01.T01:CDS 30.0%
AAAAAATGCGTGGTAACTGT+TGG - Chr3:97823025-97823044 MsG0380017554.01.T01:intron 35.0%
CAGTTTGATGTGATTATCGT+CGG - Chr3:97822457-97822476 MsG0380017554.01.T01:CDS 35.0%
CCAAAAAAGCTAGCAAAAGT+TGG + Chr3:97823181-97823200 None:intergenic 35.0%
GAAGGTAAATTCGTAATTGG+TGG - Chr3:97823148-97823167 MsG0380017554.01.T01:CDS 35.0%
GTTACTGGAGGATTAAAGAA+GGG - Chr3:97823122-97823141 MsG0380017554.01.T01:CDS 35.0%
TCAAAACCATTACTACCCTT+TGG - Chr3:97822618-97822637 MsG0380017554.01.T01:CDS 35.0%
TCAATCACAAAATCCTCATC+TGG + Chr3:97823415-97823434 None:intergenic 35.0%
TGGTGAGTTTGGAAAAAATG+TGG - Chr3:97823444-97823463 MsG0380017554.01.T01:CDS 35.0%
TGTATGATTCCATCACCAAA+GGG + Chr3:97822636-97822655 None:intergenic 35.0%
TGTTACTGGAGGATTAAAGA+AGG - Chr3:97823121-97823140 MsG0380017554.01.T01:intron 35.0%
TTGAATATAGGTAGCACGAA+TGG + Chr3:97822602-97822621 None:intergenic 35.0%
TTGTATGATTCCATCACCAA+AGG + Chr3:97822637-97822656 None:intergenic 35.0%
! GTGATGGAATCATACAAACT+TGG - Chr3:97822640-97822659 MsG0380017554.01.T01:CDS 35.0%
!! GAATGGGTTGAAGGTATATT+TGG - Chr3:97823331-97823350 MsG0380017554.01.T01:CDS 35.0%
!!! AAAAATGTGGTTTTGGGTGT+TGG - Chr3:97823457-97823476 MsG0380017554.01.T01:CDS 35.0%
!!! CCAACTTTTGCTAGCTTTTT+TGG - Chr3:97823178-97823197 MsG0380017554.01.T01:CDS 35.0%
ACAAACTTGGAAAGAAGCTC+AGG - Chr3:97822653-97822672 MsG0380017554.01.T01:CDS 40.0%
ATGCAAGATTGTTTCACCAC+TGG + Chr3:97823379-97823398 None:intergenic 40.0%
CAGACACTCGCTTACAAAAA+CGG - Chr3:97822912-97822931 MsG0380017554.01.T01:CDS 40.0%
GAAAGACAACACAAAGGTGA+CGG - Chr3:97822944-97822963 MsG0380017554.01.T01:CDS 40.0%
GTAACAAACATGAGTCTCCA+CGG + Chr3:97823107-97823126 None:intergenic 40.0%
GTATTCAATGACACCAGATG+AGG - Chr3:97823399-97823418 MsG0380017554.01.T01:CDS 40.0%
TAACAAACATGAGTCTCCAC+GGG + Chr3:97823106-97823125 None:intergenic 40.0%
TGAAATTCCGATAAAACCCG+TGG - Chr3:97823087-97823106 MsG0380017554.01.T01:intron 40.0%
TTTCCGTTATCGAAAACTGC+CGG - Chr3:97822748-97822767 MsG0380017554.01.T01:CDS 40.0%
! AGACTCATGTTTGTTACTGG+AGG - Chr3:97823110-97823129 MsG0380017554.01.T01:intron 40.0%
! AGGATTAAAGAAGGGCATGA+AGG - Chr3:97823130-97823149 MsG0380017554.01.T01:CDS 40.0%
! GGGTTGAAGGTATATTTGGT+GGG - Chr3:97823335-97823354 MsG0380017554.01.T01:CDS 40.0%
! GGTTGAAGGTATATTTGGTG+GGG - Chr3:97823336-97823355 MsG0380017554.01.T01:CDS 40.0%
! GTATCCTGGTTTGATGAAAG+CGG - Chr3:97823234-97823253 MsG0380017554.01.T01:CDS 40.0%
! GTTGTAGTTTTTACCGCGAA+TGG - Chr3:97822986-97823005 MsG0380017554.01.T01:CDS 40.0%
! TGGAGACTCATGTTTGTTAC+TGG - Chr3:97823107-97823126 MsG0380017554.01.T01:intron 40.0%
! TGGGTTGAAGGTATATTTGG+TGG - Chr3:97823334-97823353 MsG0380017554.01.T01:CDS 40.0%
! TTCCGGTAAGTTGAATTTGC+CGG + Chr3:97822827-97822846 None:intergenic 40.0%
! TTTAAGATGGCTCCGGTTAT+TGG - Chr3:97823495-97823514 MsG0380017554.01.T01:CDS 40.0%
! TTTCCGGCAGTTTTCGATAA+CGG + Chr3:97822754-97822773 None:intergenic 40.0%
!! GAGTTAAAGGAATGGGTTGA+AGG - Chr3:97823322-97823341 MsG0380017554.01.T01:CDS 40.0%
!! GGTGACGGATATAAAAACGA+CGG - Chr3:97822959-97822978 MsG0380017554.01.T01:CDS 40.0%
!!! CTGGTGGGGTATTTTTTTTC+CGG + Chr3:97822770-97822789 None:intergenic 40.0%
!!! GATTTTTTGGGTGGTGAGTT+TGG - Chr3:97823433-97823452 MsG0380017554.01.T01:CDS 40.0%
!!! TGGTTTTGGGTGTTGGTTTT+CGG - Chr3:97823464-97823483 MsG0380017554.01.T01:CDS 40.0%
AAACCAGGATACTCCAGAAC+GGG + Chr3:97823226-97823245 None:intergenic 45.0%
AATAAACGTCGTAGCCCACT+TGG + Chr3:97822680-97822699 None:intergenic 45.0%
ATAAACGTCGTAGCCCACTT+GGG + Chr3:97822679-97822698 None:intergenic 45.0%
CAAACCAGGATACTCCAGAA+CGG + Chr3:97823227-97823246 None:intergenic 45.0%
CAACTTACCGGAAAATGGGT+GGG - Chr3:97822834-97822853 MsG0380017554.01.T01:CDS 45.0%
CCATCACCAAAGGGTAGTAA+TGG + Chr3:97822627-97822646 None:intergenic 45.0%
CCATTACTACCCTTTGGTGA+TGG - Chr3:97822624-97822643 MsG0380017554.01.T01:CDS 45.0%
GAATTTGCCGGCGAATTTGT+CGG + Chr3:97822815-97822834 None:intergenic 45.0%
GACGGATATAAAAACGACGG+AGG - Chr3:97822962-97822981 MsG0380017554.01.T01:CDS 45.0%
GCGAATGGTGAAAAGTTTCG+CGG - Chr3:97823001-97823020 MsG0380017554.01.T01:CDS 45.0%
GTTTCGCGGTAAAAAATGCG+TGG - Chr3:97823015-97823034 MsG0380017554.01.T01:intron 45.0%
TATAGGTAGCACGAATGGTG+CGG + Chr3:97822597-97822616 None:intergenic 45.0%
TCAACTTACCGGAAAATGGG+TGG - Chr3:97822833-97822852 MsG0380017554.01.T01:CDS 45.0%
TTCGGGTCATGGGTTTAAGA+TGG - Chr3:97823482-97823501 MsG0380017554.01.T01:CDS 45.0%
! AAACATGGCAGTGGCTTTTG+TGG + Chr3:97822892-97822911 None:intergenic 45.0%
! AACATGGCAGTGGCTTTTGT+GGG + Chr3:97822891-97822910 None:intergenic 45.0%
! GCGAAACTTTTCACCATTCG+CGG + Chr3:97823002-97823021 None:intergenic 45.0%
! GTAAGCGAGTGTCTGAAACA+TGG + Chr3:97822907-97822926 None:intergenic 45.0%
! TCATGGGTTTAAGATGGCTC+CGG - Chr3:97823488-97823507 MsG0380017554.01.T01:CDS 45.0%
!! CGATAACGGAAAGGATGACT+GGG + Chr3:97822740-97822759 None:intergenic 45.0%
!! TCGATAACGGAAAGGATGAC+TGG + Chr3:97822741-97822760 None:intergenic 45.0%
!! TGAGTCTCCACGGGTTTTAT+CGG + Chr3:97823097-97823116 None:intergenic 45.0%
!! TGTTGATTCAAGTGAGCCAG+TGG - Chr3:97823360-97823379 MsG0380017554.01.T01:CDS 45.0%
!!! GAGTGTTTTGAGACCCCTTT+TGG + Chr3:97822521-97822540 None:intergenic 45.0%
!!! GGCAGTTTTCGATAACGGAA+AGG + Chr3:97822749-97822768 None:intergenic 45.0%
!!! GGTTTTGGGTGTTGGTTTTC+GGG - Chr3:97823465-97823484 MsG0380017554.01.T01:CDS 45.0%
AAAGAAGCTCAGGCCCAAGT+GGG - Chr3:97822663-97822682 MsG0380017554.01.T01:CDS 50.0%
AAAGCCCAGCACCTTGACAT+GGG - Chr3:97822702-97822721 MsG0380017554.01.T01:CDS 50.0%
AACCCCACGGTCTCTTATCA+GGG + Chr3:97823285-97823304 None:intergenic 50.0%
AGGATGACTGGGTCGTTGAA+TGG + Chr3:97822729-97822748 None:intergenic 50.0%
ATAGGTAGCACGAATGGTGC+GGG + Chr3:97822596-97822615 None:intergenic 50.0%
ATCATCACAACCGAACCCCA+CGG + Chr3:97823298-97823317 None:intergenic 50.0%
CAAGTTGCCGACAAATTCGC+CGG - Chr3:97822805-97822824 MsG0380017554.01.T01:CDS 50.0%
CGAATTTGTCGGCAACTTGC+TGG + Chr3:97822804-97822823 None:intergenic 50.0%
CGCCGGCAAATTCAACTTAC+CGG - Chr3:97822822-97822841 MsG0380017554.01.T01:CDS 50.0%
CGCTTACCAAGCTGCCAAAA+GGG - Chr3:97822504-97822523 MsG0380017554.01.T01:CDS 50.0%
GATGTGATTATCGTCGGAGC+CGG - Chr3:97822463-97822482 MsG0380017554.01.T01:CDS 50.0%
GCTTACCAAGCTGCCAAAAG+GGG - Chr3:97822505-97822524 MsG0380017554.01.T01:CDS 50.0%
GGATGACTGGGTCGTTGAAT+GGG + Chr3:97822728-97822747 None:intergenic 50.0%
TGACCCTGATAAGAGACCGT+GGG - Chr3:97823279-97823298 MsG0380017554.01.T01:CDS 50.0%
TGATAAGAGACCGTGGGGTT+CGG - Chr3:97823285-97823304 MsG0380017554.01.T01:CDS 50.0%
TGTATACGGAACACCCGTTC+TGG - Chr3:97823210-97823229 MsG0380017554.01.T01:CDS 50.0%
TTGATGAAAGCGGCGGTTCA+CGG - Chr3:97823244-97823263 MsG0380017554.01.T01:CDS 50.0%
! CCTTTTGGCAGCTTGGTAAG+CGG + Chr3:97822506-97822525 None:intergenic 50.0%
! GAGTGTCTGAAACATGGCAG+TGG + Chr3:97822901-97822920 None:intergenic 50.0%
! TCCTGGTTTGATGAAAGCGG+CGG - Chr3:97823237-97823256 MsG0380017554.01.T01:CDS 50.0%
! TTTGACTTTCTCCACCACCG+TGG - Chr3:97822553-97822572 MsG0380017554.01.T01:CDS 50.0%
!! ATTTGTCGGCAACTTGCTGG+TGG + Chr3:97822801-97822820 None:intergenic 50.0%
!!! GGTGTTGGTTTTCGGGTCAT+GGG - Chr3:97823472-97823491 MsG0380017554.01.T01:CDS 50.0%
AATGGTGCGGGATTCACCGT+GGG + Chr3:97822584-97822603 None:intergenic 55.0%
ATTCACCGTGGGAAGAGCCA+CGG + Chr3:97822573-97822592 None:intergenic 55.0%
CAAAGCCCAGCACCTTGACA+TGG - Chr3:97822701-97822720 MsG0380017554.01.T01:CDS 55.0%
CAGTATGCCACCGTGTTCAG+TGG + Chr3:97822865-97822884 None:intergenic 55.0%
CCGCTTACCAAGCTGCCAAA+AGG - Chr3:97822503-97822522 MsG0380017554.01.T01:CDS 55.0%
CGTGGTAACTGTTGGAGCGT+GGG - Chr3:97823033-97823052 MsG0380017554.01.T01:intron 55.0%
CGTTGAATGGGCCCATGTCA+AGG + Chr3:97822716-97822735 None:intergenic 55.0%
GAAAGAAGCTCAGGCCCAAG+TGG - Chr3:97822662-97822681 MsG0380017554.01.T01:CDS 55.0%
GAACCCCACGGTCTCTTATC+AGG + Chr3:97823286-97823305 None:intergenic 55.0%
GACCCTGATAAGAGACCGTG+GGG - Chr3:97823280-97823299 MsG0380017554.01.T01:CDS 55.0%
GTGACCCTGATAAGAGACCG+TGG - Chr3:97823278-97823297 MsG0380017554.01.T01:CDS 55.0%
GTGGGCTTGTCCACTGAACA+CGG - Chr3:97822852-97822871 MsG0380017554.01.T01:CDS 55.0%
TTTGGCAGCTTGGTAAGCGG+TGG + Chr3:97822503-97822522 None:intergenic 55.0%
! ACCGCCGCTTTCATCAAACC+AGG + Chr3:97823241-97823260 None:intergenic 55.0%
! GGACAAGCCCACCCATTTTC+CGG + Chr3:97822844-97822863 None:intergenic 55.0%
! TGAGACCCCTTTTGGCAGCT+TGG + Chr3:97822513-97822532 None:intergenic 55.0%
!! ACACCCGTTCTGGAGTATCC+TGG - Chr3:97823220-97823239 MsG0380017554.01.T01:CDS 55.0%
!!! GGGTGTTGGTTTTCGGGTCA+TGG - Chr3:97823471-97823490 MsG0380017554.01.T01:CDS 55.0%
ATGAAAGCGGCGGTTCACGG+TGG - Chr3:97823247-97823266 MsG0380017554.01.T01:CDS 60.0%
ATGGGCCCATGTCAAGGTGC+TGG + Chr3:97822710-97822729 None:intergenic 60.0%
CTGGTGGTTGAGGAGCTGGT+GGG + Chr3:97822785-97822804 None:intergenic 60.0%
CTTGCTGGTGGTTGAGGAGC+TGG + Chr3:97822789-97822808 None:intergenic 60.0%
GAATGGTGCGGGATTCACCG+TGG + Chr3:97822585-97822604 None:intergenic 60.0%
GCGTGGTAACTGTTGGAGCG+TGG - Chr3:97823032-97823051 MsG0380017554.01.T01:intron 60.0%
GGCTTGTCCACTGAACACGG+TGG - Chr3:97822855-97822874 MsG0380017554.01.T01:CDS 60.0%
GGTGGAACTTCCCATGACGC+CGG + Chr3:97822485-97822504 None:intergenic 60.0%
TGGTGGTTGAGGAGCTGGTG+GGG + Chr3:97822784-97822803 None:intergenic 60.0%
! TGGGCCCATGTCAAGGTGCT+GGG + Chr3:97822709-97822728 None:intergenic 60.0%
!! CGGCAACTTGCTGGTGGTTG+AGG + Chr3:97822795-97822814 None:intergenic 60.0%
AAGCGGCGGTTCACGGTGGT+CGG - Chr3:97823251-97823270 MsG0380017554.01.T01:CDS 65.0%
ATCGTCGGAGCCGGCGTCAT+GGG - Chr3:97822472-97822491 MsG0380017554.01.T01:CDS 65.0%
CACCACCGTGGCTCTTCCCA+CGG - Chr3:97822565-97822584 MsG0380017554.01.T01:CDS 65.0%
GCTGGTGGTTGAGGAGCTGG+TGG + Chr3:97822786-97822805 None:intergenic 65.0%
TATCGTCGGAGCCGGCGTCA+TGG - Chr3:97822471-97822490 MsG0380017554.01.T01:CDS 65.0%
CACCGTGGGAAGAGCCACGG+TGG + Chr3:97822570-97822589 None:intergenic 70.0%
CGTGGGAAGAGCCACGGTGG+TGG + Chr3:97822567-97822586 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 97822445 97823528 97822445 ID=MsG0380017554.01;Name=MsG0380017554.01
Chr3 mRNA 97822445 97823528 97822445 ID=MsG0380017554.01.T01;Parent=MsG0380017554.01;Name=MsG0380017554.01.T01;_AED=0.47;_eAED=0.49;_QI=0|0|0|1|1|1|2|0|328
Chr3 exon 97823122 97823528 97823122 ID=MsG0380017554.01.T01:exon:21376;Parent=MsG0380017554.01.T01
Chr3 exon 97822445 97823024 97822445 ID=MsG0380017554.01.T01:exon:21375;Parent=MsG0380017554.01.T01
Chr3 CDS 97823122 97823528 97823122 ID=MsG0380017554.01.T01:cds;Parent=MsG0380017554.01.T01
Chr3 CDS 97822445 97823024 97822445 ID=MsG0380017554.01.T01:cds;Parent=MsG0380017554.01.T01
Gene Sequence

>MsG0380017554.01.T01

ATGGAGGATTCTCAGTTTGATGTGATTATCGTCGGAGCCGGCGTCATGGGAAGTTCCACCGCTTACCAAGCTGCCAAAAGGGGTCTCAAAACACTCTTGCTTGAACAATTTGACTTTCTCCACCACCGTGGCTCTTCCCACGGTGAATCCCGCACCATTCGTGCTACCTATATTCAAAACCATTACTACCCTTTGGTGATGGAATCATACAAACTTGGAAAGAAGCTCAGGCCCAAGTGGGCTACGACGTTTATTTCAAAGCCCAGCACCTTGACATGGGCCCATTCAACGACCCAGTCATCCTTTCCGTTATCGAAAACTGCCGGAAAAAAAATACCCCACCAGCTCCTCAACCACCAGCAAGTTGCCGACAAATTCGCCGGCAAATTCAACTTACCGGAAAATGGACAACACAAAGGTGACGGATATAAAAACGACGGAGGTGTTGTAGTTTTTACCGCGAATGGTGAAAAGTTTCGCGGTAAAAAATGCGTGGTAACTGTTGGAGCGTGGGCAAATAAGTTAGTTAAAAGAATTGGCGGAGTTGAAATTCCGATAAAACCCGTGGAGACTCATGTTTGTTACTGGAGGATTAAAGAAGGGCATGAAGGTAAATTCGTAATTGGTGGCGATTTTCCAACTTTTGCTAGCTTTTTTGGTAAGGTTTATGTATACGGAACACCCGTTCTGGAGTATCCTGGTTTGATGAAAGCGGCGGTTCACGGTGGTCGGTTGTGTGACCCTGATAAGAGACCGTGGGGTTCGGTTGTGATGATGAATGAGTTAAAGGAATGGGTTGAAGGTATATTTGGTGGGGTTGTTGATTCAAGTGAGCCAGTGGTGAAACAATCTTGCATGTATTCAATGACACCAGATGAGGATTTTGTGATTGATTTTTTGGGTGGTGAGTTTGGAAAAAATGTGGTTTTGGGTGTTGGTTTTCGGGTCATGGGTTTAAGATGGCTCCGGTTATTGGTAAGATATTGA
Protein sequence

>MsG0380017554.01.T01

MEDSQFDVIIVGAGVMGSSTAYQAAKRGLKTLLLEQFDFLHHRGSSHGESRTIRATYIQNHYYPLVMESYKLGKKLRPKWATTFISKPSTLTWAHSTTQSSFPLSKTAGKKIPHQLLNHQQVADKFAGKFNLPENGQHKGDGYKNDGGVVVFTANGEKFRGKKCVVTVGAWANKLVKRIGGVEIPIKPVETHVCYWRIKEGHEGKFVIGGDFPTFASFFGKVYVYGTPVLEYPGLMKAAVHGGRLCDPDKRPWGSVVMMNELKEWVEGIFGGVVDSSEPVVKQSCMYSMTPDEDFVIDFLGGEFGKNVVLGVGFRVMGLRWLRLLVRY*