AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017832.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017832.01.T01 MTR_3g113160 91.176 306 23 3 1 305 1 303 0.0 561
MsG0380017832.01.T01 MTR_1g023340 77.698 278 58 1 27 304 35 308 2.28e-162 457
MsG0380017832.01.T01 MTR_1g023340 77.698 278 58 1 27 304 22 295 1.20e-161 456
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017832.01.T01 AT4G24160 82.772 267 46 0 24 290 53 319 8.30e-170 475
MsG0380017832.01.T01 AT4G24160 81.985 272 48 1 20 290 48 319 1.13e-168 475

Find 83 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATGTACAACACTTAATTT+TGG 0.224490 3:-101133117 MsG0380017832.01.T01:CDS
ACTGACCTTGAGCGCGTATT+TGG 0.229778 3:+101133246 None:intergenic
CCTACGCTTGTTATGGTTCA+TGG 0.238094 3:-101133688 MsG0380017832.01.T01:CDS
TAGTACTACTTACTTGATAA+TGG 0.269614 3:+101133934 None:intergenic
TTAGTAACAAACTCAGTCTT+TGG 0.271154 3:+101133062 None:intergenic
ATACTGCTTGGACATTCTTT+TGG 0.272412 3:-101133283 MsG0380017832.01.T01:CDS
GTGGCAGAGGTTTAGGTCCT+TGG 0.277706 3:-101131808 MsG0380017832.01.T01:intron
GAGCCGTTCTGAACCATCTA+TGG 0.283949 3:-101133019 MsG0380017832.01.T01:CDS
GAGAAAACGCGGCTCGTTAC+TGG 0.289319 3:+101133744 None:intergenic
TGCATTTGTGGCAGAGGTTT+AGG 0.300561 3:-101131815 MsG0380017832.01.T01:intron
TGGCAGAGGTTTAGGTCCTT+GGG 0.303425 3:-101131807 MsG0380017832.01.T01:intron
CTAATAATTAATTTGATCAT+AGG 0.311713 3:-101134129 MsG0380017832.01.T01:five_prime_UTR
TCATGGATACGCTGCTTCTC+AGG 0.312153 3:-101133671 MsG0380017832.01.T01:CDS
CATCGAAATCTAAAAGCTTC+TGG 0.316718 3:-101134021 MsG0380017832.01.T01:CDS
ATTAATTTGATCATAGGAAT+AGG 0.342374 3:-101134123 MsG0380017832.01.T01:five_prime_UTR
TGCGTATTGCGTAAGTAGTT+TGG 0.350893 3:-101134258 None:intergenic
GTATATTTGCGGACCATGTT+AGG 0.357715 3:+101131782 None:intergenic
TAAAATTAGATTCCCATAGA+TGG 0.360134 3:+101133006 None:intergenic
ATGCCCCTTCTTCAAAGGTT+TGG 0.374907 3:-101131526 MsG0380017832.01.T01:CDS
TGATTCTCCTACGCTTGTTA+TGG 0.377711 3:-101133695 MsG0380017832.01.T01:CDS
ATAACAAGCGTAGGAGAATC+AGG 0.396588 3:+101133697 None:intergenic
ATTAAGTGTTGTACATGCTC+AGG 0.405149 3:+101133122 None:intergenic
ACACAGCTCCCCACTAGCTT+TGG 0.405889 3:+101131584 None:intergenic
ATGTCCAAGCAGTATGAAAT+TGG 0.409418 3:+101133291 None:intergenic
GAATCAAGTCTGCTGCTAAC+TGG 0.413281 3:-101131713 MsG0380017832.01.T01:intron
ACCTAGCACTTGTATATTTG+CGG 0.422424 3:+101131771 None:intergenic
CTAGGATGCCCCTTCTTCAA+AGG 0.443647 3:-101131531 MsG0380017832.01.T01:CDS
GAGCGTGTTAACATAGGTTC+TGG 0.447895 3:-101133802 MsG0380017832.01.T01:CDS
GCTTCTGGTCTTCACTCCGT+TGG 0.462666 3:-101134006 MsG0380017832.01.T01:CDS
CTCCCGGCTCTAAAGTTAGA+TGG 0.468219 3:-101133777 MsG0380017832.01.T01:CDS
CTGACCAATTTCATACTGCT+TGG 0.468352 3:-101133295 MsG0380017832.01.T01:CDS
GATTGCCAAACCTTTGAAGA+AGG 0.482203 3:+101131521 None:intergenic
AGGTCCTTGGGGTCCTAACA+TGG 0.493507 3:-101131795 MsG0380017832.01.T01:CDS
CTTACTTGATAATGGAAAGA+AGG 0.504243 3:+101133942 None:intergenic
AACATAGGTTCTGGTCCTCC+CGG 0.504382 3:-101133793 MsG0380017832.01.T01:CDS
TTGCATTTGGAGCATTTGCT+AGG 0.504415 3:-101131549 MsG0380017832.01.T01:CDS
TTTGGATTGTCAGCGTTGGT+TGG 0.504522 3:-101134240 MsG0380017832.01.T01:five_prime_UTR
ATCATTGCTGTTGATCAACT+TGG 0.506443 3:-101133604 MsG0380017832.01.T01:CDS
AAATATACAAGTGCTAGGTT+TGG 0.514674 3:-101131767 MsG0380017832.01.T01:CDS
GTTTCTTCTGTAAACCCGGC+AGG 0.515353 3:+101133089 None:intergenic
CATGGATACGCTGCTTCTCA+GGG 0.521168 3:-101133670 MsG0380017832.01.T01:CDS
GTTCAAGAGCGTGTTAACAT+AGG 0.522283 3:-101133808 MsG0380017832.01.T01:CDS
GAACCATCTAACTTTAGAGC+CGG 0.525661 3:+101133774 None:intergenic
TAGGTTTGGTACACATTCAC+CGG 0.527573 3:-101131753 MsG0380017832.01.T01:CDS
AGATTATGTTTATCATACAT+TGG 0.527652 3:-101131610 MsG0380017832.01.T01:CDS
ATCTGTTTCTTCTGTAAACC+CGG 0.536750 3:+101133085 None:intergenic
CTTAAAACAGCTAATCAGAT+GGG 0.543225 3:+101131490 None:intergenic
TTCACATGTAAAAGTACTGA+AGG 0.544682 3:-101133459 MsG0380017832.01.T01:intron
ATTGCCAAACCTTTGAAGAA+GGG 0.549575 3:+101131522 None:intergenic
ACTTAAAACAGCTAATCAGA+TGG 0.550039 3:+101131489 None:intergenic
CATTGGCGGCCAAAGCTAGT+GGG 0.553970 3:-101131593 MsG0380017832.01.T01:CDS
AACCATCTAACTTTAGAGCC+GGG 0.560688 3:+101133775 None:intergenic
GGCAGAGGTTTAGGTCCTTG+GGG 0.564857 3:-101131806 MsG0380017832.01.T01:intron
ACATTGGCGGCCAAAGCTAG+TGG 0.568091 3:-101131594 MsG0380017832.01.T01:CDS
ATGATATGATCGGTTGAAGT+GGG 0.570401 3:+101133980 None:intergenic
TTGCCAAACCTTTGAAGAAG+GGG 0.577063 3:+101131523 None:intergenic
AAGTTTCGAGCAACATGGAA+GGG 0.587783 3:-101133041 MsG0380017832.01.T01:CDS
GTAGTTTGGATTGTCAGCGT+TGG 0.594368 3:-101134244 MsG0380017832.01.T01:five_prime_UTR
GCGGCTCGTTACTGGTTGAA+CGG 0.595132 3:+101133752 None:intergenic
AGCCGTTCTGAACCATCTAT+GGG 0.595543 3:-101133018 MsG0380017832.01.T01:CDS
TAAGTTTCGAGCAACATGGA+AGG 0.597296 3:-101133042 MsG0380017832.01.T01:CDS
TGCTTCCAAATACGCGCTCA+AGG 0.600744 3:-101133251 MsG0380017832.01.T01:intron
TTATGTTTATCATACATTGG+CGG 0.606664 3:-101131607 MsG0380017832.01.T01:CDS
TTAAGTGTTGTACATGCTCA+GGG 0.606900 3:+101133123 None:intergenic
GATGATATGATCGGTTGAAG+TGG 0.613666 3:+101133979 None:intergenic
ATCTTGCAGAAACTGAGGCA+TGG 0.614755 3:-101133357 MsG0380017832.01.T01:intron
ATCATAGGAATAGGATAGCG+TGG 0.615245 3:-101134114 MsG0380017832.01.T01:five_prime_UTR
CTCAGCGGCGATGATATGAT+CGG 0.621828 3:+101133970 None:intergenic
CCATGAACCATAACAAGCGT+AGG 0.627502 3:+101133688 None:intergenic
ACCGGCAAAACTGATTGAAG+AGG 0.627893 3:-101131735 MsG0380017832.01.T01:CDS
TCATTGCTGTTGATCAACTT+GGG 0.634448 3:-101133603 MsG0380017832.01.T01:intron
ATTGGCGGCCAAAGCTAGTG+GGG 0.638338 3:-101131592 MsG0380017832.01.T01:CDS
TCCGCAAATATACAAGTGCT+AGG 0.645840 3:-101131772 MsG0380017832.01.T01:CDS
CGGACCATGTTAGGACCCCA+AGG 0.646328 3:+101131791 None:intergenic
AGCAATGATTCTGAAACGAG+AGG 0.649538 3:+101133618 None:intergenic
TTACTAAGTTTCGAGCAACA+TGG 0.649865 3:-101133046 MsG0380017832.01.T01:CDS
GGAAAGAAGGCGTTTCTCAG+CGG 0.650667 3:+101133955 None:intergenic
TGTTGATCTTGCAGAAACTG+AGG 0.661163 3:-101133362 MsG0380017832.01.T01:intron
ATTAGACAAAACGACGACGT+CGG 0.664772 3:-101134055 MsG0380017832.01.T01:CDS
TTCCCATAGATGGTTCAGAA+CGG 0.677131 3:+101133016 None:intergenic
CGGTTGAAGTGGGAATCCAA+CGG 0.678476 3:+101133990 None:intergenic
GTAACAGTGTTGAGAAAACG+CGG 0.698377 3:+101133733 None:intergenic
CATCTAACTTTAGAGCCGGG+AGG 0.755218 3:+101133778 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTACAAATACATATTAA+AGG + Chr3:101133181-101133200 None:intergenic 10.0%
!! AATTTAAATAAATAGGTAAA+CGG + Chr3:101132367-101132386 None:intergenic 10.0%
!!! TTTAAATATATTTTTGCATT+TGG - Chr3:101134191-101134210 MsG0380017832.01.T01:five_prime_UTR 10.0%
!! ACAAAATAATATAACAATGT+TGG + Chr3:101133897-101133916 None:intergenic 15.0%
!! ACAACGAAATTTAAATAAAT+AGG + Chr3:101132374-101132393 None:intergenic 15.0%
!! TAATAACAATAAAAAGTGAT+TGG + Chr3:101133568-101133587 None:intergenic 15.0%
!! TTATTACTCAAATCAAATAT+GGG - Chr3:101133582-101133601 MsG0380017832.01.T01:intron 15.0%
!!! ACAATTTTCTGTTATTATAT+TGG - Chr3:101132919-101132938 MsG0380017832.01.T01:intron 15.0%
!!! CTAATAATTAATTTGATCAT+AGG - Chr3:101131624-101131643 MsG0380017832.01.T01:intron 15.0%
!! AAATGAATAAAATATGCATG+AGG + Chr3:101132600-101132619 None:intergenic 20.0%
!! ACAAATACATATTAAAGGAA+GGG + Chr3:101133176-101133195 None:intergenic 20.0%
!! AGATTATGTTTATCATACAT+TGG - Chr3:101134143-101134162 MsG0380017832.01.T01:five_prime_UTR 20.0%
!! CCATAGAATAAAGTATAAAA+TGG - Chr3:101133854-101133873 MsG0380017832.01.T01:intron 20.0%
!! GCAAGATATTAATTGATATA+TGG - Chr3:101134067-101134086 MsG0380017832.01.T01:CDS 20.0%
!! GTGAAAATATATAGAAATGA+AGG + Chr3:101132247-101132266 None:intergenic 20.0%
!! GTTATTACTCAAATCAAATA+TGG - Chr3:101133581-101133600 MsG0380017832.01.T01:intron 20.0%
!! TACAAATACATATTAAAGGA+AGG + Chr3:101133177-101133196 None:intergenic 20.0%
!! TATCAAAGGATGATAAAAAT+GGG + Chr3:101132815-101132834 None:intergenic 20.0%
!! TTATCAAAGGATGATAAAAA+TGG + Chr3:101132816-101132835 None:intergenic 20.0%
!!! ATATATGTTTTGTTTTGAAC+AGG + Chr3:101131563-101131582 None:intergenic 20.0%
!!! ATTAATTTGATCATAGGAAT+AGG - Chr3:101131630-101131649 MsG0380017832.01.T01:intron 20.0%
!!! CCATTTTATACTTTATTCTA+TGG + Chr3:101133857-101133876 None:intergenic 20.0%
!!! GTATACTTTTATTTATGAAG+AGG - Chr3:101132887-101132906 MsG0380017832.01.T01:intron 20.0%
!!! TCATAAATAAAAGTATACAC+AGG + Chr3:101132885-101132904 None:intergenic 20.0%
!!! TGTCTTTTTTTCTCTTATTA+TGG - Chr3:101133511-101133530 MsG0380017832.01.T01:intron 20.0%
!!! TTCTATATATTTTCACAGTT+GGG - Chr3:101132251-101132270 MsG0380017832.01.T01:intron 20.0%
!!! TTTCTATATATTTTCACAGT+TGG - Chr3:101132250-101132269 MsG0380017832.01.T01:intron 20.0%
! AAATCAAATATGGGATTAGA+GGG - Chr3:101133591-101133610 MsG0380017832.01.T01:intron 25.0%
! AATCTAGAGAATCTGAAAAA+TGG - Chr3:101131667-101131686 MsG0380017832.01.T01:intron 25.0%
! AGTTCTACTTAATAACTATC+TGG - Chr3:101133247-101133266 MsG0380017832.01.T01:intron 25.0%
! CAAAAAATTGTCAGGTAAAA+AGG - Chr3:101132775-101132794 MsG0380017832.01.T01:intron 25.0%
! GTAAAAGAAAGTTAAGAAGT+CGG + Chr3:101132570-101132589 None:intergenic 25.0%
! TAAAATTAGATTCCCATAGA+TGG + Chr3:101132750-101132769 None:intergenic 25.0%
! TAGTACTACTTACTTGATAA+TGG + Chr3:101131822-101131841 None:intergenic 25.0%
! TATCAGGTTTCAATAAATGA+GGG - Chr3:101133674-101133693 MsG0380017832.01.T01:CDS 25.0%
! TATTACTAACTCTTAAGTCA+TGG - Chr3:101133336-101133355 MsG0380017832.01.T01:CDS 25.0%
! TGTTTGTTTGTTTGTTTGTT+AGG - Chr3:101131905-101131924 MsG0380017832.01.T01:intron 25.0%
! TTATGTTTATCATACATTGG+CGG - Chr3:101134146-101134165 MsG0380017832.01.T01:five_prime_UTR 25.0%
! TTGTTATAACTGAAATTGAC+CGG - Chr3:101133200-101133219 MsG0380017832.01.T01:intron 25.0%
!! TATGAAATTGGTCAGATTTT+TGG + Chr3:101132453-101132472 None:intergenic 25.0%
!! TCTATATATTTTCACAGTTG+GGG - Chr3:101132252-101132271 MsG0380017832.01.T01:intron 25.0%
!! TTTTACCTGACAATTTTTTG+AGG + Chr3:101132775-101132794 None:intergenic 25.0%
!!! AATTTTCATTTCTGTTTCTG+TGG - Chr3:101133767-101133786 MsG0380017832.01.T01:CDS 25.0%
!!! TTCTGTTATTATATTGGTTC+TGG - Chr3:101132925-101132944 MsG0380017832.01.T01:intron 25.0%
!!! TTTTGTTTTGAACAGGTAAA+AGG + Chr3:101131556-101131575 None:intergenic 25.0%
AAATATACAAGTGCTAGGTT+TGG - Chr3:101133986-101134005 MsG0380017832.01.T01:CDS 30.0%
AATCAAATATGGGATTAGAG+GGG - Chr3:101133592-101133611 MsG0380017832.01.T01:intron 30.0%
AATGTGTGCTAACTTATCAA+AGG + Chr3:101132829-101132848 None:intergenic 30.0%
AGAGTCTTCTACTATATATC+AGG - Chr3:101132982-101133001 MsG0380017832.01.T01:intron 30.0%
CAAATCAAATATGGGATTAG+AGG - Chr3:101133590-101133609 MsG0380017832.01.T01:intron 30.0%
GAGTCTTCTACTATATATCA+GGG - Chr3:101132983-101133002 MsG0380017832.01.T01:intron 30.0%
GTAATCTTAAGTCAATATGC+CGG + Chr3:101133222-101133241 None:intergenic 30.0%
GTATCAGGTTTCAATAAATG+AGG - Chr3:101133673-101133692 MsG0380017832.01.T01:CDS 30.0%
TCAACCATTAATTAAGCCAA+GGG + Chr3:101133391-101133410 None:intergenic 30.0%
TTAATTAATGGTTGAGGACT+TGG - Chr3:101133396-101133415 MsG0380017832.01.T01:intron 30.0%
TTACACCTCAAAAAATTGTC+AGG - Chr3:101132767-101132786 MsG0380017832.01.T01:intron 30.0%
TTAGTAACAAACTCAGTCTT+TGG + Chr3:101132694-101132713 None:intergenic 30.0%
TTATTATGGTTACAAGCAGA+AGG - Chr3:101133525-101133544 MsG0380017832.01.T01:intron 30.0%
! AGTCATGGATGTAATCATTT+TGG - Chr3:101133351-101133370 MsG0380017832.01.T01:CDS 30.0%
! GCATGTACAACACTTAATTT+TGG - Chr3:101132636-101132655 MsG0380017832.01.T01:intron 30.0%
! GTACTTTTACATGTGAAATC+AGG + Chr3:101132291-101132310 None:intergenic 30.0%
! TGTACAACACTTAATTTTGG+TGG - Chr3:101132639-101132658 MsG0380017832.01.T01:intron 30.0%
! TTATGCTACTTCTAAGTATC+AGG - Chr3:101133658-101133677 MsG0380017832.01.T01:CDS 30.0%
! TTTGTTTGTTTGTTAGGACT+GGG - Chr3:101131919-101131938 MsG0380017832.01.T01:intron 30.0%
!! AGCTTTATTGTATATGAGCA+CGG - Chr3:101133488-101133507 MsG0380017832.01.T01:intron 30.0%
!! ATTTTAATGCAATGCAGCAA+TGG + Chr3:101132536-101132555 None:intergenic 30.0%
!! CTTACTTGATAATGGAAAGA+AGG + Chr3:101131814-101131833 None:intergenic 30.0%
!! GTACAACACTTAATTTTGGT+GGG - Chr3:101132640-101132659 MsG0380017832.01.T01:intron 30.0%
!! TTCACATGTAAAAGTACTGA+AGG - Chr3:101132294-101132313 MsG0380017832.01.T01:intron 30.0%
!!! AATCACCCTTACATGTTTTT+TGG - Chr3:101133807-101133826 MsG0380017832.01.T01:CDS 30.0%
!!! ATGGTTCATTGATTCTTTTG+AGG - Chr3:101132415-101132434 MsG0380017832.01.T01:intron 30.0%
!!! TCATTGATTCTTTTGAGGAA+TGG - Chr3:101132420-101132439 MsG0380017832.01.T01:intron 30.0%
AAAATATGCATGAGGTCGTT+TGG + Chr3:101132592-101132611 None:intergenic 35.0%
AAATATCATTCCACGAAGCA+TGG - Chr3:101133717-101133736 MsG0380017832.01.T01:CDS 35.0%
ACCTAGCACTTGTATATTTG+CGG + Chr3:101133985-101134004 None:intergenic 35.0%
AGAGTCATTCTTCTACTTGT+AGG - Chr3:101133617-101133636 MsG0380017832.01.T01:CDS 35.0%
ATACAATAAAGCTCTTGCCA+CGG + Chr3:101133481-101133500 None:intergenic 35.0%
ATGACCCTTGGCTTAATTAA+TGG - Chr3:101133384-101133403 MsG0380017832.01.T01:intron 35.0%
ATGAGGGAAAGCTAGAAAAA+TGG - Chr3:101133690-101133709 MsG0380017832.01.T01:CDS 35.0%
ATGATATGATCGGTTGAAGT+GGG + Chr3:101131776-101131795 None:intergenic 35.0%
ATGTCCAAGCAGTATGAAAT+TGG + Chr3:101132465-101132484 None:intergenic 35.0%
CATCGAAATCTAAAAGCTTC+TGG - Chr3:101131732-101131751 MsG0380017832.01.T01:CDS 35.0%
CTAGAGAATCTGAAAAATGG+CGG - Chr3:101131670-101131689 MsG0380017832.01.T01:intron 35.0%
CTCAACCATTAATTAAGCCA+AGG + Chr3:101133392-101133411 None:intergenic 35.0%
CTTGGCTTAATTAATGGTTG+AGG - Chr3:101133390-101133409 MsG0380017832.01.T01:intron 35.0%
GAGAACCTAAGTCAATATGT+CGG + Chr3:101133297-101133316 None:intergenic 35.0%
GTGACAATTCTCATGTTTGT+TGG + Chr3:101133833-101133852 None:intergenic 35.0%
GTTGGCCAAAAAACATGTAA+GGG + Chr3:101133815-101133834 None:intergenic 35.0%
TACTTTGTTGCTCGACTTTA+AGG - Chr3:101132338-101132357 MsG0380017832.01.T01:intron 35.0%
TGTTGGCCAAAAAACATGTA+AGG + Chr3:101133816-101133835 None:intergenic 35.0%
TTACTAAGTTTCGAGCAACA+TGG - Chr3:101132707-101132726 MsG0380017832.01.T01:intron 35.0%
! ATACTGCTTGGACATTCTTT+TGG - Chr3:101132470-101132489 MsG0380017832.01.T01:intron 35.0%
! ATATATTTTCACAGTTGGGG+CGG - Chr3:101132255-101132274 MsG0380017832.01.T01:intron 35.0%
! ATCATTGCTGTTGATCAACT+TGG - Chr3:101132149-101132168 MsG0380017832.01.T01:intron 35.0%
! ATCTGTTTCTTCTGTAAACC+CGG + Chr3:101132671-101132690 None:intergenic 35.0%
! ATTAAGTGTTGTACATGCTC+AGG + Chr3:101132634-101132653 None:intergenic 35.0%
! ATTGCCAAACCTTTGAAGAA+GGG + Chr3:101134234-101134253 None:intergenic 35.0%
! CAGTTTTTCTGATGCATTTG+TGG - Chr3:101133926-101133945 MsG0380017832.01.T01:intron 35.0%
! GGATGAATTTTTATGACCCT+TGG - Chr3:101133372-101133391 MsG0380017832.01.T01:intron 35.0%
! GTTTGTTTGTTTGTTAGGAC+TGG - Chr3:101131918-101131937 MsG0380017832.01.T01:intron 35.0%
! TCATTGCTGTTGATCAACTT+GGG - Chr3:101132150-101132169 MsG0380017832.01.T01:intron 35.0%
! TTAAGTGTTGTACATGCTCA+GGG + Chr3:101132633-101132652 None:intergenic 35.0%
!! TTGTCTTTGAAACGAAGTGT+TGG - Chr3:101133096-101133115 MsG0380017832.01.T01:CDS 35.0%
AAAATTCCTTCCCGATACCA+GGG + Chr3:101133753-101133772 None:intergenic 40.0%
AAGTTTCGAGCAACATGGAA+GGG - Chr3:101132712-101132731 MsG0380017832.01.T01:intron 40.0%
AGGTTCTCTTTGTCACTGTT+GGG - Chr3:101133309-101133328 MsG0380017832.01.T01:CDS 40.0%
AGTATCAACAAACTGAGGTG+AGG + Chr3:101132960-101132979 None:intergenic 40.0%
ATAACAAGCGTAGGAGAATC+AGG + Chr3:101132059-101132078 None:intergenic 40.0%
ATCATAGGAATAGGATAGCG+TGG - Chr3:101131639-101131658 MsG0380017832.01.T01:intron 40.0%
ATTAGACAAAACGACGACGT+CGG - Chr3:101131698-101131717 MsG0380017832.01.T01:intron 40.0%
CTGACCAATTTCATACTGCT+TGG - Chr3:101132458-101132477 MsG0380017832.01.T01:intron 40.0%
GATGATATGATCGGTTGAAG+TGG + Chr3:101131777-101131796 None:intergenic 40.0%
GTATATTTGCGGACCATGTT+AGG + Chr3:101133974-101133993 None:intergenic 40.0%
TAAAAAGTGATTGGCAACCC+AGG + Chr3:101133559-101133578 None:intergenic 40.0%
TAAGTTTCGAGCAACATGGA+AGG - Chr3:101132711-101132730 MsG0380017832.01.T01:intron 40.0%
TAGGTTCTCTTTGTCACTGT+TGG - Chr3:101133308-101133327 MsG0380017832.01.T01:CDS 40.0%
TCCGCAAATATACAAGTGCT+AGG - Chr3:101133981-101134000 MsG0380017832.01.T01:CDS 40.0%
TCTGCAGTATCAACAAACTG+AGG + Chr3:101132965-101132984 None:intergenic 40.0%
TGTTGATCTTGCAGAAACTG+AGG - Chr3:101132391-101132410 MsG0380017832.01.T01:intron 40.0%
TTCCCATAGATGGTTCAGAA+CGG + Chr3:101132740-101132759 None:intergenic 40.0%
! GATTGCCAAACCTTTGAAGA+AGG + Chr3:101134235-101134254 None:intergenic 40.0%
! GTAACAGTGTTGAGAAAACG+CGG + Chr3:101132023-101132042 None:intergenic 40.0%
! GTTCAAGAGCGTGTTAACAT+AGG - Chr3:101131945-101131964 MsG0380017832.01.T01:intron 40.0%
! TAGGTTTGGTACACATTCAC+CGG - Chr3:101134000-101134019 MsG0380017832.01.T01:CDS 40.0%
! TCCTCTTCAATCAGTTTTGC+CGG + Chr3:101134022-101134041 None:intergenic 40.0%
! TGATTCTCCTACGCTTGTTA+TGG - Chr3:101132058-101132077 MsG0380017832.01.T01:intron 40.0%
! TGTTTCTGTGGAATTAGCCA+TGG - Chr3:101133779-101133798 MsG0380017832.01.T01:CDS 40.0%
! TTGCATTTGGAGCATTTGCT+AGG - Chr3:101134204-101134223 MsG0380017832.01.T01:five_prime_UTR 40.0%
! TTGCCAAACCTTTGAAGAAG+GGG + Chr3:101134233-101134252 None:intergenic 40.0%
!! AACCATCTAACTTTAGAGCC+GGG + Chr3:101131981-101132000 None:intergenic 40.0%
!! AGCAATGATTCTGAAACGAG+AGG + Chr3:101132138-101132157 None:intergenic 40.0%
!! GAACCATCTAACTTTAGAGC+CGG + Chr3:101131982-101132001 None:intergenic 40.0%
!! GTAGACCGACATATTGACTT+AGG - Chr3:101133289-101133308 MsG0380017832.01.T01:CDS 40.0%
AAGTCTGCTGCTAACTGGTA+TGG - Chr3:101134045-101134064 MsG0380017832.01.T01:CDS 45.0%
AATCACCAATCCCTGGTATC+GGG - Chr3:101133740-101133759 MsG0380017832.01.T01:CDS 45.0%
AATGCATTTCGCACGAGTTC+AGG - Chr3:101133134-101133153 MsG0380017832.01.T01:intron 45.0%
ACCGGCAAAACTGATTGAAG+AGG - Chr3:101134018-101134037 MsG0380017832.01.T01:CDS 45.0%
ATCTTGCAGAAACTGAGGCA+TGG - Chr3:101132396-101132415 MsG0380017832.01.T01:intron 45.0%
ATGCCCCTTCTTCAAAGGTT+TGG - Chr3:101134227-101134246 MsG0380017832.01.T01:five_prime_UTR 45.0%
CCATGAACCATAACAAGCGT+AGG + Chr3:101132068-101132087 None:intergenic 45.0%
CGAGTTCAGGTCAATATTGC+TGG - Chr3:101133147-101133166 MsG0380017832.01.T01:intron 45.0%
CTGTGGAATTAGCCATGGAA+AGG - Chr3:101133784-101133803 MsG0380017832.01.T01:CDS 45.0%
GAAAATTCCTTCCCGATACC+AGG + Chr3:101133754-101133773 None:intergenic 45.0%
GAATCAAGTCTGCTGCTAAC+TGG - Chr3:101134040-101134059 MsG0380017832.01.T01:CDS 45.0%
GAATCACCAATCCCTGGTAT+CGG - Chr3:101133739-101133758 MsG0380017832.01.T01:CDS 45.0%
GAGCGTGTTAACATAGGTTC+TGG - Chr3:101131951-101131970 MsG0380017832.01.T01:intron 45.0%
GTAAGGGTGATTCCTTTCCA+TGG + Chr3:101133799-101133818 None:intergenic 45.0%
GTAGTTTGGATTGTCAGCGT+TGG - Chr3:101131509-101131528 MsG0380017832.01.T01:CDS 45.0%
GTGACCTCTTAGTCACATGA+AGG + Chr3:101133427-101133446 None:intergenic 45.0%
GTGAGAATGAGCATCTACAC+AGG + Chr3:101133053-101133072 None:intergenic 45.0%
GTTGCCTTCATGTGACTAAG+AGG - Chr3:101133420-101133439 MsG0380017832.01.T01:intron 45.0%
TGCATTTGTGGCAGAGGTTT+AGG - Chr3:101133938-101133957 MsG0380017832.01.T01:intron 45.0%
TGTGACTAAGAGGTCACAAG+TGG - Chr3:101133430-101133449 MsG0380017832.01.T01:intron 45.0%
TTCTGATGCATTTGTGGCAG+AGG - Chr3:101133932-101133951 MsG0380017832.01.T01:intron 45.0%
! AGCCGTTCTGAACCATCTAT+GGG - Chr3:101132735-101132754 MsG0380017832.01.T01:intron 45.0%
! ATTGGTGATTCCATGCTTCG+TGG + Chr3:101133730-101133749 None:intergenic 45.0%
! CTGCTTGGACATTCTTTTGG+TGG - Chr3:101132473-101132492 MsG0380017832.01.T01:intron 45.0%
!! CCTACGCTTGTTATGGTTCA+TGG - Chr3:101132065-101132084 MsG0380017832.01.T01:intron 45.0%
!! TTAATTTTGGTGGGACCTGC+CGG - Chr3:101132649-101132668 MsG0380017832.01.T01:intron 45.0%
!! TTTGGATTGTCAGCGTTGGT+TGG - Chr3:101131513-101131532 MsG0380017832.01.T01:CDS 45.0%
!!! TTATTTTAAATTTTAAGATT+AGG + Chr3:101133075-101133094 None:intergenic 5.0%
ACTGACCTTGAGCGCGTATT+TGG + Chr3:101132510-101132529 None:intergenic 50.0%
AGCATGGAATCACCAATCCC+TGG - Chr3:101133733-101133752 MsG0380017832.01.T01:CDS 50.0%
CACAAGTGGTAAGACTGCCT+GGG - Chr3:101133444-101133463 MsG0380017832.01.T01:intron 50.0%
CATGGATACGCTGCTTCTCA+GGG - Chr3:101132083-101132102 MsG0380017832.01.T01:intron 50.0%
CGGTTGAAGTGGGAATCCAA+CGG + Chr3:101131766-101131785 None:intergenic 50.0%
CTAGGATGCCCCTTCTTCAA+AGG - Chr3:101134222-101134241 MsG0380017832.01.T01:five_prime_UTR 50.0%
CTCAGCGGCGATGATATGAT+CGG + Chr3:101131786-101131805 None:intergenic 50.0%
GTTTCTTCTGTAAACCCGGC+AGG + Chr3:101132667-101132686 None:intergenic 50.0%
TCACAAGTGGTAAGACTGCC+TGG - Chr3:101133443-101133462 MsG0380017832.01.T01:intron 50.0%
TCATGGATACGCTGCTTCTC+AGG - Chr3:101132082-101132101 MsG0380017832.01.T01:intron 50.0%
TGCTTCCAAATACGCGCTCA+AGG - Chr3:101132502-101132521 MsG0380017832.01.T01:intron 50.0%
TGGCAGAGGTTTAGGTCCTT+GGG - Chr3:101133946-101133965 MsG0380017832.01.T01:intron 50.0%
! AACATAGGTTCTGGTCCTCC+CGG - Chr3:101131960-101131979 MsG0380017832.01.T01:intron 50.0%
! AAGCAGAAGGAGCTTGTTCC+TGG - Chr3:101133538-101133557 MsG0380017832.01.T01:intron 50.0%
! AGCAGAAGGAGCTTGTTCCT+GGG - Chr3:101133539-101133558 MsG0380017832.01.T01:intron 50.0%
! GAGCCGTTCTGAACCATCTA+TGG - Chr3:101132734-101132753 MsG0380017832.01.T01:intron 50.0%
!! CATCTAACTTTAGAGCCGGG+AGG + Chr3:101131978-101131997 None:intergenic 50.0%
!! CTCCCGGCTCTAAAGTTAGA+TGG - Chr3:101131976-101131995 MsG0380017832.01.T01:intron 50.0%
!! GGAAAGAAGGCGTTTCTCAG+CGG + Chr3:101131801-101131820 None:intergenic 50.0%
!! TAATTTTGGTGGGACCTGCC+GGG - Chr3:101132650-101132669 MsG0380017832.01.T01:intron 50.0%
ACATTGGCGGCCAAAGCTAG+TGG - Chr3:101134159-101134178 MsG0380017832.01.T01:five_prime_UTR 55.0%
AGGTCCTTGGGGTCCTAACA+TGG - Chr3:101133958-101133977 MsG0380017832.01.T01:CDS 55.0%
ATTGGCGGCCAAAGCTAGTG+GGG - Chr3:101134161-101134180 MsG0380017832.01.T01:five_prime_UTR 55.0%
CATTGGCGGCCAAAGCTAGT+GGG - Chr3:101134160-101134179 MsG0380017832.01.T01:five_prime_UTR 55.0%
CCACGGAAGAATCCTTTCCC+AGG + Chr3:101133464-101133483 None:intergenic 55.0%
CCTGGGAAAGGATTCTTCCG+TGG - Chr3:101133461-101133480 MsG0380017832.01.T01:CDS 55.0%
GAGAAAACGCGGCTCGTTAC+TGG + Chr3:101132012-101132031 None:intergenic 55.0%
GGCAGAGGTTTAGGTCCTTG+GGG - Chr3:101133947-101133966 MsG0380017832.01.T01:CDS 55.0%
GTGGCAGAGGTTTAGGTCCT+TGG - Chr3:101133945-101133964 MsG0380017832.01.T01:intron 55.0%
GTGGTAAGACTGCCTGGGAA+AGG - Chr3:101133449-101133468 MsG0380017832.01.T01:intron 55.0%
TCCTTCCCGATACCAGGGAT+TGG + Chr3:101133748-101133767 None:intergenic 55.0%
! ACACAGCTCCCCACTAGCTT+TGG + Chr3:101134172-101134191 None:intergenic 55.0%
! ACCAATCCCTGGTATCGGGA+AGG - Chr3:101133744-101133763 MsG0380017832.01.T01:CDS 55.0%
! GCGGCTCGTTACTGGTTGAA+CGG + Chr3:101132004-101132023 None:intergenic 55.0%
! GCTTCTGGTCTTCACTCCGT+TGG - Chr3:101131747-101131766 MsG0380017832.01.T01:CDS 55.0%
CGGACCATGTTAGGACCCCA+AGG + Chr3:101133965-101133984 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 101131500 101134275 101131500 ID=MsG0380017832.01;Name=MsG0380017832.01
Chr3 mRNA 101131500 101134275 101131500 ID=MsG0380017832.01.T01;Parent=MsG0380017832.01;Name=MsG0380017832.01.T01;_AED=0.49;_eAED=0.51;_QI=186|1|0.85|1|1|1|7|0|315
Chr3 exon 101131500 101131630 101131500 ID=MsG0380017832.01.T01:exon:25254;Parent=MsG0380017832.01.T01
Chr3 exon 101131714 101131823 101131714 ID=MsG0380017832.01.T01:exon:25253;Parent=MsG0380017832.01.T01
Chr3 exon 101132987 101133147 101132987 ID=MsG0380017832.01.T01:exon:25252;Parent=MsG0380017832.01.T01
Chr3 exon 101133252 101133370 101133252 ID=MsG0380017832.01.T01:exon:25251;Parent=MsG0380017832.01.T01
Chr3 exon 101133460 101133506 101133460 ID=MsG0380017832.01.T01:exon:25250;Parent=MsG0380017832.01.T01
Chr3 exon 101133604 101133840 101133604 ID=MsG0380017832.01.T01:exon:25249;Parent=MsG0380017832.01.T01
Chr3 exon 101133947 101134275 101133947 ID=MsG0380017832.01.T01:exon:25248;Parent=MsG0380017832.01.T01
Chr3 five_prime_UTR 101134090 101134275 101134090 ID=MsG0380017832.01.T01:five_prime_utr;Parent=MsG0380017832.01.T01
Chr3 CDS 101133947 101134089 101133947 ID=MsG0380017832.01.T01:cds;Parent=MsG0380017832.01.T01
Chr3 CDS 101133604 101133840 101133604 ID=MsG0380017832.01.T01:cds;Parent=MsG0380017832.01.T01
Chr3 CDS 101133460 101133506 101133460 ID=MsG0380017832.01.T01:cds;Parent=MsG0380017832.01.T01
Chr3 CDS 101133252 101133370 101133252 ID=MsG0380017832.01.T01:cds;Parent=MsG0380017832.01.T01
Chr3 CDS 101132987 101133147 101132987 ID=MsG0380017832.01.T01:cds;Parent=MsG0380017832.01.T01
Chr3 CDS 101131714 101131823 101131714 ID=MsG0380017832.01.T01:cds;Parent=MsG0380017832.01.T01
Chr3 CDS 101131500 101131630 101131500 ID=MsG0380017832.01.T01:cds;Parent=MsG0380017832.01.T01
Gene Sequence

>MsG0380017832.01.T01

ATGGCGGAAGAAATTAGACAAAACGACGACGTCGGTTCATCATCATCATCGAAATCTAAAAGCTTCTGGTCTTCACTCCGTTGGATTCCCACTTCAACCGATCATATCATCGCCGCTGAGAAACGCCTTCTTTCCATTATCAAGACTGGGTATGTTCAAGAGCGTGTTAACATAGGTTCTGGTCCTCCCGGCTCTAAAGTTAGATGGTTCCGTTCAACCAGTAACGAGCCGCGTTTTCTCAACACTGTTACATTTGATAGTAAACCTGATTCTCCTACGCTTGTTATGGTTCATGGATACGCTGCTTCTCAGGGTTTCTTCTTTCGCAATTTTGATGCTCTTGCCTCTCGTTTCAGAATCATTGCTGTTGATCAACTTGGTTGGGGCGGATCAAGCAGACCTGATTTCACATGTAAAAGTACTGAAGAAACTGAGGCATGGTTCATTGATTCTTTTGAGGAATGGAGAAAAGCCAAAAATCTGACCAATTTCATACTGCTTGGACATTCTTTTGGTGGTTATGTTGCTTCCAAATACGCGCTCAAGCACCCTGAGCATGTACAACACTTAATTTTGGTGGGACCTGCCGGGTTTACAGAAGAAACAGATCCAAAGACTGAGTTTGTTACTAAGTTTCGAGCAACATGGAAGGGAGCCGTTCTGAACCATCTATGGGAATCTAATTTTACACCTCAAAAAATTGTCAGAGGTTTAGGTCCTTGGGGTCCTAACATGGTCCGCAAATATACAAGTGCTAGGTTTGGTACACATTCACCGGCAAAACTGATTGAAGAGGAATCAAGTCTGCTGCTAACTGATTATGTTTATCATACATTGGCGGCCAAAGCTAGTGGGGAGCTGTGTTTAAATATATTTTTGCATTTGGAGCATTTGCTAGGATGCCCCTTCTTCAAAGGTTTGGCAATCATTCTCTTCCCATCTGATTAG
Protein sequence

>MsG0380017832.01.T01

MAEEIRQNDDVGSSSSSKSKSFWSSLRWIPTSTDHIIAAEKRLLSIIKTGYVQERVNIGSGPPGSKVRWFRSTSNEPRFLNTVTFDSKPDSPTLVMVHGYAASQGFFFRNFDALASRFRIIAVDQLGWGGSSRPDFTCKSTEETEAWFIDSFEEWRKAKNLTNFILLGHSFGGYVASKYALKHPEHVQHLILVGPAGFTEETDPKTEFVTKFRATWKGAVLNHLWESNFTPQKIVRGLGPWGPNMVRKYTSARFGTHSPAKLIEEESSLLLTDYVYHTLAAKASGELCLNIFLHLEHLLGCPFFKGLAIILFPSD*