AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017909.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017909.01.T01 MTR_3g115030 97.592 623 15 0 1 623 1 623 0.0 1266
MsG0380017909.01.T01 MTR_1g026380 78.060 629 132 3 1 623 55 683 0.0 1017
MsG0380017909.01.T01 MTR_1g026370 68.618 427 91 3 198 623 41 425 0.0 593
MsG0380017909.01.T01 MTR_1g115230 27.891 588 348 19 101 656 105 648 1.93e-47 178
MsG0380017909.01.T01 MTR_5g048280 23.860 658 377 22 24 594 59 679 1.34e-30 128
MsG0380017909.01.T01 MTR_8g079030 35.948 153 96 2 442 593 518 669 1.47e-20 97.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017909.01.T01 AT1G76140 77.023 618 142 0 6 623 73 690 0.0 1034
MsG0380017909.01.T01 AT1G76140 77.023 618 142 0 6 623 73 690 0.0 1034
MsG0380017909.01.T01 AT1G20380 72.408 627 170 1 1 624 1 627 0.0 981
MsG0380017909.01.T01 AT1G20380 73.118 465 125 0 160 624 1 465 0.0 736
MsG0380017909.01.T01 AT1G50380 24.313 691 427 23 11 652 8 651 1.32e-46 176
MsG0380017909.01.T01 AT1G50380 24.313 691 427 23 11 652 74 717 2.43e-46 176
MsG0380017909.01.T01 AT1G69020 33.566 143 94 1 453 595 493 634 2.61e-19 93.2
MsG0380017909.01.T01 AT1G69020 33.566 143 94 1 453 595 525 666 2.78e-19 92.8
MsG0380017909.01.T01 AT5G66960 34.043 141 92 1 453 593 536 675 7.11e-13 72.4

Find 162 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCCTCCAAACGAATATTT+AGG 0.117671 3:-102117954 None:intergenic
ATTCGTGGTGGTGGAGAATA+TGG 0.163223 3:+102119613 MsG0380017909.01.T01:CDS
ACTCGGACTAGCTTATATTT+TGG 0.218654 3:-102118820 None:intergenic
ACCTTCGATGCATAACTTTC+TGG 0.218698 3:-102119737 None:intergenic
AATGTTCATTGTTGCGAAAA+AGG 0.252900 3:+102119456 MsG0380017909.01.T01:CDS
CCATCTTCACTCAAGGCATT+TGG 0.263199 3:-102117253 None:intergenic
ATATATCAGCGGAAAATTAT+TGG 0.281264 3:+102120203 MsG0380017909.01.T01:intron
CATGCTTGGACCTCAGATTA+TGG 0.294369 3:+102120052 MsG0380017909.01.T01:CDS
GAACAACGCATGACACAAAT+TGG 0.295320 3:-102116207 None:intergenic
TTCCTCCAAACGAATATTTA+GGG 0.301529 3:-102117953 None:intergenic
TGTGATTGTTTCGTTAAGTT+TGG 0.304907 3:-102116583 None:intergenic
TCACACCCGTGTCTGTTATA+TGG 0.305529 3:+102119496 MsG0380017909.01.T01:CDS
TACTTATCGGCTCTTCTAAA+AGG 0.314513 3:-102116636 None:intergenic
CATCTTCACTCAAGGCATTT+GGG 0.329070 3:-102117252 None:intergenic
GAAAGGGTTTGTTGAGAAAC+AGG 0.331155 3:+102116518 MsG0380017909.01.T01:CDS
CAGTAGTACAGTTTGTTAAC+TGG 0.333458 3:-102118646 None:intergenic
TGTTGGTGCTTGCATAAATC+AGG 0.336647 3:+102119780 MsG0380017909.01.T01:CDS
TAAGCTAGTCCGAGTAGATT+TGG 0.349800 3:+102118828 MsG0380017909.01.T01:CDS
CCTTCGATGCATAACTTTCT+GGG 0.355840 3:-102119736 None:intergenic
AACAATGAACATTGGGATCT+TGG 0.362802 3:-102119446 None:intergenic
CCTTTCACTTCTTCAGCATC+AGG 0.363467 3:-102116501 None:intergenic
ATTGTACTCACAAAACATTT+AGG 0.364515 3:+102119568 MsG0380017909.01.T01:CDS
GATAATAAAGCATATGATAA+AGG 0.364685 3:-102117875 None:intergenic
TTAGTTCCAGTGGTAGTGAT+TGG 0.369107 3:+102117335 MsG0380017909.01.T01:CDS
CCGTGTCTGTTATATGGATA+TGG 0.375864 3:+102119502 MsG0380017909.01.T01:CDS
CTCACCCATGATAAAGTATC+AGG 0.390599 3:-102117400 None:intergenic
GTTATCATGTGTCCAGCTAA+TGG 0.391388 3:-102117513 None:intergenic
GAAAACCCTAAATATTCGTT+TGG 0.392760 3:+102117948 MsG0380017909.01.T01:CDS
TATCAGTGCAACCTGGGAAC+AGG 0.393410 3:+102119111 MsG0380017909.01.T01:CDS
ATCTTGGTACCATCTTTACT+AGG 0.394743 3:-102119430 None:intergenic
GGAGGAATTGTTACTGATGA+TGG 0.394917 3:+102117969 MsG0380017909.01.T01:CDS
AGAACATCAGCCCATGTGTT+TGG 0.397071 3:-102118856 None:intergenic
TTTGATGACTTCATTTCTGC+TGG 0.418535 3:+102119682 MsG0380017909.01.T01:CDS
GATGCATAACTTTCTGGGTT+GGG 0.421422 3:-102119731 None:intergenic
GTACAGAGACCTGAGCTCTT+TGG 0.425018 3:+102119895 MsG0380017909.01.T01:intron
GAGTCCGCATGTGCTGTAAA+TGG 0.429061 3:+102118904 MsG0380017909.01.T01:CDS
ATGGAAGTAAAAGTACTTAT+CGG 0.429112 3:-102116649 None:intergenic
TATCAATAAGTTTGACAAAA+GGG 0.434231 3:-102118726 None:intergenic
TGTTAGTGGAAGCGGGATAA+TGG 0.434299 3:+102120233 MsG0380017909.01.T01:CDS
TGAGCTCTTTGGCTGTGCAT+TGG 0.436966 3:+102119906 MsG0380017909.01.T01:CDS
GTGCTTGAAGGCCAGTGTTA+TGG 0.438027 3:-102116668 None:intergenic
TTATCAATAAGTTTGACAAA+AGG 0.440234 3:-102118727 None:intergenic
AGTGGTTGTTACCATCGATA+AGG 0.440898 3:-102116405 None:intergenic
ACAGGTTCAATTGACGAATT+CGG 0.443464 3:+102116536 MsG0380017909.01.T01:CDS
ATTGGCTCATGTTGGCGTTA+TGG 0.447955 3:+102119924 MsG0380017909.01.T01:CDS
CAAGTAAGAGACTTAAAATC+AGG 0.451702 3:+102118973 MsG0380017909.01.T01:CDS
CTCCGAGTTTCAAGTCAATC+AGG 0.455720 3:+102119185 MsG0380017909.01.T01:CDS
ACAAAGAGGAAGAGTTTCAT+TGG 0.457004 3:+102120083 MsG0380017909.01.T01:CDS
TTCTGTTCTATGCCGAAGAA+AGG 0.457239 3:-102116285 None:intergenic
ATTGTTACTCAGGTCATGCT+TGG 0.458027 3:+102120038 MsG0380017909.01.T01:intron
TCACGTAATATCTTCAGATC+AGG 0.458498 3:-102119138 None:intergenic
CGATGCATAACTTTCTGGGT+TGG 0.460252 3:-102119732 None:intergenic
GTTTGAACAATTCCCATATG+TGG 0.460873 3:+102120265 MsG0380017909.01.T01:CDS
GATCAGGAGTCCCTGTTCCC+AGG 0.461520 3:-102119122 None:intergenic
TAGTTCCAGTGGTAGTGATT+GGG 0.463735 3:+102117336 MsG0380017909.01.T01:CDS
AGAGAATGTCCTGTGCTTGA+AGG 0.472057 3:-102116680 None:intergenic
ACAAACCTATGGTAAATTTG+TGG 0.473864 3:-102119960 None:intergenic
TAAACTGTGCCAATGTCAAT+TGG 0.475125 3:-102119015 None:intergenic
GATGGAGAAGTGGTAGATGC+TGG 0.477294 3:+102117834 MsG0380017909.01.T01:CDS
GATATTGCAGAGGTTCGTTT+AGG 0.486994 3:-102116323 None:intergenic
AGCGGGATAATGGCAGGGTC+CGG 0.487345 3:+102120243 MsG0380017909.01.T01:CDS
TTACGTGAAATTGCAGTCCC+TGG 0.488900 3:+102119153 MsG0380017909.01.T01:CDS
TATCGTCTATCAGTGCAACC+TGG 0.489294 3:+102119104 MsG0380017909.01.T01:CDS
TTATTGGTAAGTGCTGTTAG+TGG 0.490542 3:+102120219 MsG0380017909.01.T01:CDS
AACCCTAAATATTCGTTTGG+AGG 0.493035 3:+102117951 MsG0380017909.01.T01:CDS
GTGGAGAATATGGGGAAGAA+TGG 0.493539 3:+102119623 MsG0380017909.01.T01:CDS
TTTACAAGCTTTCTGTCTCC+CGG 0.495034 3:+102119081 MsG0380017909.01.T01:CDS
GACATCACTTACTTGGGTGC+TGG 0.498134 3:-102117560 None:intergenic
TACGTGAAATTGCAGTCCCT+GGG 0.499626 3:+102119154 MsG0380017909.01.T01:CDS
TTCGTGGTGGTGGAGAATAT+GGG 0.500297 3:+102119614 MsG0380017909.01.T01:CDS
GTAAGTGCTGTTAGTGGAAG+CGG 0.500552 3:+102120225 MsG0380017909.01.T01:CDS
TACTGCATTGCGAATATTCG+TGG 0.503623 3:+102119598 MsG0380017909.01.T01:CDS
CTGAGCCTGATACTTTATCA+TGG 0.506192 3:+102117395 MsG0380017909.01.T01:CDS
CCATATGTGGATGGACGAAA+AGG 0.508268 3:+102120278 MsG0380017909.01.T01:CDS
CACACCCTTCGCTAATATAG+AGG 0.509249 3:-102118621 None:intergenic
CGGTTCCACAAATTTACCAT+AGG 0.509404 3:+102119955 MsG0380017909.01.T01:CDS
GGCTGTGCATTGGCTCATGT+TGG 0.510464 3:+102119916 MsG0380017909.01.T01:CDS
AGTGGAAGCGGGATAATGGC+AGG 0.510751 3:+102120237 MsG0380017909.01.T01:CDS
CCAAATGCCTTGAGTGAAGA+TGG 0.512197 3:+102117253 MsG0380017909.01.T01:CDS
GAGTGAAGATGCCAAGTACT+TGG 0.512289 3:+102117303 MsG0380017909.01.T01:CDS
GTGGTTGTTACCATCGATAA+GGG 0.513200 3:-102116404 None:intergenic
AAGCGCATAAGCCAAGTACT+TGG 0.519968 3:-102117314 None:intergenic
AGCAATGGTGGACTTCTTGT+TGG 0.523888 3:+102119763 MsG0380017909.01.T01:CDS
ACAGGACATTCTCTATGTCC+AGG 0.526352 3:+102116689 MsG0380017909.01.T01:CDS
CTCCTCCTCTATATTAGCGA+AGG 0.526676 3:+102118616 MsG0380017909.01.T01:CDS
TAGTTTGGAGGGAGAACCAC+AGG 0.530358 3:+102117219 MsG0380017909.01.T01:CDS
AATGCACAGCCAAAGAGCTC+AGG 0.531544 3:-102119904 None:intergenic
TGGTGAATACCTTGTGTCCA+CGG 0.533386 3:+102119702 MsG0380017909.01.T01:CDS
CATATGGGAATTGTTCAAAC+CGG 0.535702 3:-102120262 None:intergenic
CATCAACTGCCAATTGACAT+TGG 0.537917 3:+102119006 MsG0380017909.01.T01:CDS
TCAAGTAACTTACTATCAGT+TGG 0.539330 3:-102118930 None:intergenic
GAGTCGTCTCTGCGAGCCGC+GGG 0.539395 3:-102116345 None:intergenic
TAACACTGGCCTTCAAGCAC+AGG 0.543784 3:+102116671 MsG0380017909.01.T01:CDS
AGATGTTGAAATGTGAAAGA+AGG 0.547877 3:-102116255 None:intergenic
AATAAGTTTGACAAAAGGGA+GGG 0.548091 3:-102118722 None:intergenic
CCCAGAAAGTTATGCATCGA+AGG 0.551858 3:+102119736 MsG0380017909.01.T01:CDS
AGTCGCCCAATCACTACCAC+TGG 0.556942 3:-102117341 None:intergenic
TATAAAAGTGTTGCGTATCG+AGG 0.557739 3:+102117363 MsG0380017909.01.T01:CDS
TCCTCCTCTATATTAGCGAA+GGG 0.558762 3:+102118617 MsG0380017909.01.T01:CDS
CTGATGCTGAAGAAGTGAAA+GGG 0.561050 3:+102116502 MsG0380017909.01.T01:CDS
CCTGATGCTGAAGAAGTGAA+AGG 0.563636 3:+102116501 MsG0380017909.01.T01:CDS
AGTACATCTTTGTCAGACTC+TGG 0.565246 3:-102118880 None:intergenic
GAGGAATTGTTACTGATGAT+GGG 0.565555 3:+102117970 MsG0380017909.01.T01:CDS
TGCATCGAAGGTGGAAGCAA+TGG 0.565720 3:+102119748 MsG0380017909.01.T01:CDS
TTGGTTTCTCCAAATCTACT+CGG 0.566098 3:-102118837 None:intergenic
TTGGCGTTATGGACATGCTA+CGG 0.568137 3:+102119935 MsG0380017909.01.T01:CDS
ATGGAGAAGTGGTAGATGCT+GGG 0.570455 3:+102117835 MsG0380017909.01.T01:CDS
TGCACGGCGTGAAGATAATG+TGG 0.577932 3:+102119047 MsG0380017909.01.T01:CDS
GGGGAAGAATGGCATAAAGC+AGG 0.580032 3:+102119634 MsG0380017909.01.T01:CDS
ATCAGTGCAACCTGGGAACA+GGG 0.581043 3:+102119112 MsG0380017909.01.T01:CDS
GGGTATAACCCGTGGACACA+AGG 0.581061 3:-102119711 None:intergenic
GTTGCACTGATAGACGATAC+CGG 0.582502 3:-102119100 None:intergenic
AGAGTCGTCTCTGCGAGCCG+CGG 0.586403 3:-102116346 None:intergenic
GAACAATTCCCATATGTGGA+TGG 0.588419 3:+102120269 MsG0380017909.01.T01:CDS
CCATATCCATATAACAGACA+CGG 0.588695 3:-102119502 None:intergenic
ATAAGTTTGACAAAAGGGAG+GGG 0.588761 3:-102118721 None:intergenic
CATAGAACAGAACAATAGCA+TGG 0.589976 3:+102116296 MsG0380017909.01.T01:exon
TCGTGGTGGTGGAGAATATG+GGG 0.590290 3:+102119615 MsG0380017909.01.T01:CDS
TACAGTTCCATCTTCACTCA+AGG 0.591926 3:-102117260 None:intergenic
GGTGAATACCTTGTGTCCAC+GGG 0.591999 3:+102119703 MsG0380017909.01.T01:CDS
TCTTGGTACCATCTTTACTA+GGG 0.598543 3:-102119429 None:intergenic
AACTCGGAGCGATCAAACCC+AGG 0.600975 3:-102119171 None:intergenic
CTTACTTGGGTGCTGGATAG+CGG 0.601152 3:-102117553 None:intergenic
TAAGTGCTGTTAGTGGAAGC+GGG 0.602875 3:+102120226 MsG0380017909.01.T01:CDS
ATACTGTAGAGATGGAGAAG+TGG 0.604745 3:+102117824 MsG0380017909.01.T01:intron
GCTTATGCGCTTAGTTCCAG+TGG 0.605231 3:+102117325 MsG0380017909.01.T01:CDS
CAATAAGTTTGACAAAAGGG+AGG 0.615544 3:-102118723 None:intergenic
CAGTTTATGATATTTCTGCA+CGG 0.617175 3:+102119031 MsG0380017909.01.T01:CDS
ATTGCGAATATTCGTGGTGG+TGG 0.619449 3:+102119604 MsG0380017909.01.T01:CDS
GTTACCATTTACAGCACATG+CGG 0.620959 3:-102118908 None:intergenic
AGAAAGTTATGCATCGAAGG+TGG 0.621187 3:+102119739 MsG0380017909.01.T01:CDS
ATCGTCTATCAGTGCAACCT+GGG 0.624634 3:+102119105 MsG0380017909.01.T01:CDS
TTGTTACCATCGATAAGGGT+CGG 0.625434 3:-102116400 None:intergenic
AATTGGCAGTTGATGCAACA+AGG 0.625956 3:-102118998 None:intergenic
ATCGAAGGTGGAAGCAATGG+TGG 0.626239 3:+102119751 MsG0380017909.01.T01:CDS
TACCTGATTGACTTGAAACT+CGG 0.626953 3:-102119187 None:intergenic
TCTGGGTTGGGTATAACCCG+TGG 0.626963 3:-102119719 None:intergenic
GAACAGAACAATAGCATGGG+TGG 0.629768 3:+102116300 MsG0380017909.01.T01:exon
TTGCACTGATAGACGATACC+GGG 0.631013 3:-102119099 None:intergenic
GTCTGCACAACCATAATCTG+AGG 0.634336 3:-102120062 None:intergenic
TACAATGCGACTAACACTGA+AGG 0.640264 3:-102119551 None:intergenic
ATTTGGAGAAACCAAACACA+TGG 0.643157 3:+102118845 MsG0380017909.01.T01:CDS
TGAGCCTGATACTTTATCAT+GGG 0.645810 3:+102117396 MsG0380017909.01.T01:CDS
ATAGAACAGAACAATAGCAT+GGG 0.651501 3:+102116297 MsG0380017909.01.T01:exon
TTATGGTTGTGCAGACAAAG+AGG 0.652699 3:+102120069 MsG0380017909.01.T01:CDS
ACCCTTCGCTAATATAGAGG+AGG 0.652831 3:-102118618 None:intergenic
AAATCGCCGACCCTTATCGA+TGG 0.652884 3:+102116394 MsG0380017909.01.T01:CDS
CTAAAAGGAGCATCATAACG+AGG 0.655401 3:-102116621 None:intergenic
CGAGCCGCGGGATATTGCAG+AGG 0.656134 3:-102116333 None:intergenic
AATTGTTACTGATGATGGGA+AGG 0.656399 3:+102117974 MsG0380017909.01.T01:CDS
AGCTGGACACATGATAACAA+AGG 0.661177 3:+102117518 MsG0380017909.01.T01:CDS
GTGGAAGCGGGATAATGGCA+GGG 0.665449 3:+102120238 MsG0380017909.01.T01:CDS
CATATCCATATAACAGACAC+GGG 0.665897 3:-102119501 None:intergenic
ATCATGTGTCCAGCTAATGG+AGG 0.666044 3:-102117510 None:intergenic
ATGCGACTAACACTGAAGGA+TGG 0.667946 3:-102119547 None:intergenic
ACTCGGAGCGATCAAACCCA+GGG 0.675535 3:-102119170 None:intergenic
TGTCTGTTATATGGATATGG+TGG 0.678377 3:+102119505 MsG0380017909.01.T01:CDS
TTTGGGTCAAGCAAAACCTG+TGG 0.680717 3:-102117235 None:intergenic
TGCATTGCGAATATTCGTGG+TGG 0.694680 3:+102119601 MsG0380017909.01.T01:CDS
CGAACCTCTGCAATATCCCG+CGG 0.709263 3:+102116329 MsG0380017909.01.T01:CDS
TTTGGAGAAACCAAACACAT+GGG 0.715304 3:+102118846 MsG0380017909.01.T01:CDS
TCTGTCATTGACGATTACCA+TGG 0.715354 3:+102116366 MsG0380017909.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTAACAAAGTATAAATA+TGG + Chr3:102117638-102117657 MsG0380017909.01.T01:intron 10.0%
!! AAAACATTAAAAATCATCAA+TGG - Chr3:102117473-102117492 None:intergenic 15.0%
!! AAAAGAAAACAAAATCAAAA+TGG - Chr3:102120520-102120539 None:intergenic 15.0%
!! AAATTTATCCTTAATATTTC+AGG - Chr3:102120133-102120152 None:intergenic 15.0%
!! TCATTTATCAATCAATATAA+TGG + Chr3:102120660-102120679 MsG0380017909.01.T01:intron 15.0%
!!! AGTTCAATAATTATTTCTTA+AGG + Chr3:102120784-102120803 MsG0380017909.01.T01:intron 15.0%
!!! ATGCTTTATTATCATTTTTT+GGG + Chr3:102117885-102117904 MsG0380017909.01.T01:CDS 15.0%
!!! ATTTTTCTTTTCTTTTTTGA+AGG + Chr3:102116469-102116488 MsG0380017909.01.T01:intron 15.0%
!!! GTTCAATAATTATTTCTTAA+GGG + Chr3:102120785-102120804 MsG0380017909.01.T01:intron 15.0%
!!! GTTTACATTTTTAACTAATA+AGG + Chr3:102118792-102118811 MsG0380017909.01.T01:CDS 15.0%
!!! TATGCTTTATTATCATTTTT+TGG + Chr3:102117884-102117903 MsG0380017909.01.T01:CDS 15.0%
!!! TTCAATAATTATTTCTTAAG+GGG + Chr3:102120786-102120805 MsG0380017909.01.T01:intron 15.0%
!!! TTTTCTTTAATATATATCAG+CGG + Chr3:102120192-102120211 MsG0380017909.01.T01:intron 15.0%
!! AAGTTGTTACATTGTTAAAT+AGG + Chr3:102119293-102119312 MsG0380017909.01.T01:intron 20.0%
!! AATTAAGGGATATTAATCAA+AGG - Chr3:102120456-102120475 None:intergenic 20.0%
!! AGGATAAATTTCAATATGTT+AGG + Chr3:102120142-102120161 MsG0380017909.01.T01:intron 20.0%
!! ATAAGAATTCAAAACTATTC+AGG - Chr3:102118404-102118423 None:intergenic 20.0%
!! ATTAACAATAGTCCAATTAA+GGG - Chr3:102120470-102120489 None:intergenic 20.0%
!! CTATTATTATTTACTGCTTT+AGG + Chr3:102121064-102121083 MsG0380017909.01.T01:intron 20.0%
!! CTCTATAAATATCAAAATGA+TGG + Chr3:102120697-102120716 MsG0380017909.01.T01:intron 20.0%
!! GATAATAAAGCATATGATAA+AGG - Chr3:102117878-102117897 None:intergenic 20.0%
!! TAAAATAAGAAAACATGCAA+CGG + Chr3:102118059-102118078 MsG0380017909.01.T01:intron 20.0%
!! TATCAATAAGTTTGACAAAA+GGG - Chr3:102118729-102118748 None:intergenic 20.0%
!! TTATCAATAAGTTTGACAAA+AGG - Chr3:102118730-102118749 None:intergenic 20.0%
!! TTGAATTGGTATTATCTATA+TGG + Chr3:102117704-102117723 MsG0380017909.01.T01:intron 20.0%
!! TTTATCAATCAATATAATGG+AGG + Chr3:102120663-102120682 MsG0380017909.01.T01:intron 20.0%
!! TTTCATAAACTCTTTAGTAT+AGG + Chr3:102117062-102117081 MsG0380017909.01.T01:intron 20.0%
!! TTTGATTAATATCCCTTAAT+TGG + Chr3:102120455-102120474 MsG0380017909.01.T01:intron 20.0%
!!! AAGTTATCTTTTCATTTTAC+AGG + Chr3:102117195-102117214 MsG0380017909.01.T01:intron 20.0%
!!! GATTTTTAATGTTTTGTTTC+AGG + Chr3:102117478-102117497 MsG0380017909.01.T01:intron 20.0%
!!! GCTTTGTTTTTTTAATTAGT+CGG + Chr3:102116761-102116780 MsG0380017909.01.T01:intron 20.0%
!!! GTTATGTAATTTTATGCATA+TGG + Chr3:102118544-102118563 MsG0380017909.01.T01:intron 20.0%
!!! TTTATTGTTTGGATATGTTT+TGG + Chr3:102121018-102121037 MsG0380017909.01.T01:intron 20.0%
!!! TTTTTAATTAGTCGGATTTA+GGG + Chr3:102116769-102116788 MsG0380017909.01.T01:intron 20.0%
!!! TTTTTTAATTAGTCGGATTT+AGG + Chr3:102116768-102116787 MsG0380017909.01.T01:intron 20.0%
! AAAAACAGAATCAGATTCAT+GGG - Chr3:102118580-102118599 None:intergenic 25.0%
! AACTTATGTATGATTGTTCT+TGG + Chr3:102117740-102117759 MsG0380017909.01.T01:intron 25.0%
! AAGAGTTTATGAAAATAAGC+CGG - Chr3:102117056-102117075 None:intergenic 25.0%
! AATATGCATAACAGAGAAAT+AGG + Chr3:102120350-102120369 MsG0380017909.01.T01:intron 25.0%
! AATGAATCTAAACAAACCTA+TGG - Chr3:102119974-102119993 None:intergenic 25.0%
! AGAAATTCTAATGTTCAATC+AGG - Chr3:102118191-102118210 None:intergenic 25.0%
! ATATATCAGCGGAAAATTAT+TGG + Chr3:102120203-102120222 MsG0380017909.01.T01:intron 25.0%
! ATTGTACTCACAAAACATTT+AGG + Chr3:102119568-102119587 MsG0380017909.01.T01:CDS 25.0%
! GATTAACAATAGTCCAATTA+AGG - Chr3:102120471-102120490 None:intergenic 25.0%
! TAAAAACAGAATCAGATTCA+TGG - Chr3:102118581-102118600 None:intergenic 25.0%
! TAAACACTAATGAGATTGTT+TGG + Chr3:102116820-102116839 MsG0380017909.01.T01:intron 25.0%
! TAATTAAGTGCTTACATATG+AGG - Chr3:102117148-102117167 None:intergenic 25.0%
! TCATCAAAGATGATTTGAAT+TGG + Chr3:102117690-102117709 MsG0380017909.01.T01:intron 25.0%
! TCTTATGTAACAACATATCA+AGG + Chr3:102118424-102118443 MsG0380017909.01.T01:intron 25.0%
! TGGTATTCATAATTATTTCC+TGG + Chr3:102120856-102120875 MsG0380017909.01.T01:intron 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG + Chr3:102117168-102117187 MsG0380017909.01.T01:intron 25.0%
!! ATTGAATGAATTTGAGTTAG+TGG - Chr3:102116426-102116445 None:intergenic 25.0%
!! CAACTTTGAAAAAATGTGTT+TGG + Chr3:102118340-102118359 MsG0380017909.01.T01:intron 25.0%
!! TAATTATTTCTTAAGGGGAA+TGG + Chr3:102120791-102120810 MsG0380017909.01.T01:intron 25.0%
!! TGTATCATTGAACACATTTT+CGG + Chr3:102117279-102117298 MsG0380017909.01.T01:CDS 25.0%
!! TTTCATTTTACAGGATAGTT+TGG + Chr3:102117204-102117223 MsG0380017909.01.T01:intron 25.0%
!! TTTTGAATTCATCTGATTCA+GGG + Chr3:102116938-102116957 MsG0380017909.01.T01:intron 25.0%
!!! AAAAAGGATATTGTTTTGGA+TGG + Chr3:102119472-102119491 MsG0380017909.01.T01:CDS 25.0%
!!! ATGGAAGTAAAAGTACTTAT+CGG - Chr3:102116652-102116671 None:intergenic 25.0%
!!! TCAAAACTATTCAGGTTTTA+TGG - Chr3:102118396-102118415 None:intergenic 25.0%
!!! TTATTATCATTTTTTGGGCA+CGG + Chr3:102117890-102117909 MsG0380017909.01.T01:CDS 25.0%
!!! TTGATTTTGTTTTCTTTTCC+TGG + Chr3:102120522-102120541 MsG0380017909.01.T01:intron 25.0%
AAGATAACTTAGAACCTGTT+TGG - Chr3:102117185-102117204 None:intergenic 30.0%
AATAAGTTTGACAAAAGGGA+GGG - Chr3:102118725-102118744 None:intergenic 30.0%
AATGTTCATTGTTGCGAAAA+AGG + Chr3:102119456-102119475 MsG0380017909.01.T01:CDS 30.0%
ACAAACCTATGGTAAATTTG+TGG - Chr3:102119963-102119982 None:intergenic 30.0%
AGATGTTGAAATGTGAAAGA+AGG - Chr3:102116258-102116277 None:intergenic 30.0%
ATAAATAGAGAGCTGTTGAA+TGG - Chr3:102119849-102119868 None:intergenic 30.0%
ATAGAACAGAACAATAGCAT+GGG + Chr3:102116297-102116316 MsG0380017909.01.T01:exon 30.0%
ATCATCAAATACATTGACGT+TGG - Chr3:102118111-102118130 None:intergenic 30.0%
ATCCAAACAATAAAAACCAC+AGG - Chr3:102121012-102121031 None:intergenic 30.0%
ATTAATCAAAGGTCCAACAA+AGG - Chr3:102120445-102120464 None:intergenic 30.0%
ATTCCTCCAAACGAATATTT+AGG - Chr3:102117957-102117976 None:intergenic 30.0%
CAAATACTGGAATTCAAAAC+AGG - Chr3:102119255-102119274 None:intergenic 30.0%
CAAGTAAGAGACTTAAAATC+AGG + Chr3:102118973-102118992 MsG0380017909.01.T01:CDS 30.0%
CATTTCTTTAAACAAGCTAC+TGG - Chr3:102120001-102120020 None:intergenic 30.0%
CCTTTGCTAGAAATTAAAAC+AGG + Chr3:102117435-102117454 MsG0380017909.01.T01:intron 30.0%
CTCAAAATACGAGGATAAAA+TGG - Chr3:102120904-102120923 None:intergenic 30.0%
CTCAAACAGTTTCACTAAAT+GGG - Chr3:102116986-102117005 None:intergenic 30.0%
CTGATTCTTAATTGTTACTC+AGG + Chr3:102120028-102120047 MsG0380017909.01.T01:intron 30.0%
CTTTAGTACATCTAATTCCA+CGG + Chr3:102118469-102118488 MsG0380017909.01.T01:intron 30.0%
GAAAACCCTAAATATTCGTT+TGG + Chr3:102117948-102117967 MsG0380017909.01.T01:CDS 30.0%
GAAATGTCATAACTCATAAG+CGG - Chr3:102117022-102117041 None:intergenic 30.0%
TAAATAGAGAGCTGTTGAAT+GGG - Chr3:102119848-102119867 None:intergenic 30.0%
TCAAAATGGACATGATATCA+TGG - Chr3:102120506-102120525 None:intergenic 30.0%
TCAAGTAACTTACTATCAGT+TGG - Chr3:102118933-102118952 None:intergenic 30.0%
TCACTTGCCTAAAAAAAACT+CGG - Chr3:102118305-102118324 None:intergenic 30.0%
TCTCAAACAGTTTCACTAAA+TGG - Chr3:102116987-102117006 None:intergenic 30.0%
TGTGATTGTTTCGTTAAGTT+TGG - Chr3:102116586-102116605 None:intergenic 30.0%
TTAATCAAAGGTCCAACAAA+GGG - Chr3:102120444-102120463 None:intergenic 30.0%
TTCCTCCAAACGAATATTTA+GGG - Chr3:102117956-102117975 None:intergenic 30.0%
TTGCTTTAGTAATCTCCTAT+GGG + Chr3:102118210-102118229 MsG0380017909.01.T01:intron 30.0%
! ATGTGGAAAGCACATAAAAA+AGG - Chr3:102119396-102119415 None:intergenic 30.0%
! ATTTTACAGGATAGTTTGGA+GGG + Chr3:102117208-102117227 MsG0380017909.01.T01:intron 30.0%
! CAGTTTATGATATTTCTGCA+CGG + Chr3:102119031-102119050 MsG0380017909.01.T01:CDS 30.0%
! CATCTTTTATCTCCTTTCTT+CGG + Chr3:102116273-102116292 MsG0380017909.01.T01:five_prime_UTR 30.0%
! CATTTTATCCTCGTATTTTG+AGG + Chr3:102120902-102120921 MsG0380017909.01.T01:intron 30.0%
! GAGATATAATTTTCACTTGC+TGG - Chr3:102120396-102120415 None:intergenic 30.0%
! TACTTTTACTTCCATAACAC+TGG + Chr3:102116657-102116676 MsG0380017909.01.T01:CDS 30.0%
! TGCGAAAAAGGATATTGTTT+TGG + Chr3:102119468-102119487 MsG0380017909.01.T01:CDS 30.0%
! TTAAATTTTCCTCCATTAGC+TGG + Chr3:102117501-102117520 MsG0380017909.01.T01:CDS 30.0%
! TTTTCGCAACAATGAACATT+GGG - Chr3:102119456-102119475 None:intergenic 30.0%
! TTTTTCGCAACAATGAACAT+TGG - Chr3:102119457-102119476 None:intergenic 30.0%
!! CTGTTTTGAATTCCAGTATT+TGG + Chr3:102119253-102119272 MsG0380017909.01.T01:intron 30.0%
!! GTTTTGAATTCATCTGATTC+AGG + Chr3:102116937-102116956 MsG0380017909.01.T01:intron 30.0%
!! TAATAACCAAAGTGCTGAAA+TGG - Chr3:102118277-102118296 None:intergenic 30.0%
!! TAATCAAGTGAGTTTTATCC+TGG + Chr3:102120107-102120126 MsG0380017909.01.T01:intron 30.0%
!!! AGCAATTCTGTTTTTTAGCA+AGG - Chr3:102119663-102119682 None:intergenic 30.0%
!!! CCTGTTTTAATTTCTAGCAA+AGG - Chr3:102117438-102117457 None:intergenic 30.0%
!!! GCAATTCTGTTTTTTAGCAA+GGG - Chr3:102119662-102119681 None:intergenic 30.0%
!!! TAAGTGACCGAGTTTTTTTT+AGG + Chr3:102118295-102118314 MsG0380017909.01.T01:intron 30.0%
!!! TGCTTTGTTTTTCCATTTCT+AGG + Chr3:102119814-102119833 MsG0380017909.01.T01:intron 30.0%
!!! TTCTTTTCTTTTTTGAAGGC+TGG + Chr3:102116473-102116492 MsG0380017909.01.T01:intron 30.0%
!!! TTGTTTGGATATGTTTTGGT+AGG + Chr3:102121022-102121041 MsG0380017909.01.T01:intron 30.0%
AAACAGGCAATTTAACAGTG+AGG - Chr3:102119239-102119258 None:intergenic 35.0%
AAACATGGTTGAGAAACAAC+AGG - Chr3:102120964-102120983 None:intergenic 35.0%
AACAATGAACATTGGGATCT+TGG - Chr3:102119449-102119468 None:intergenic 35.0%
AACCCTAAATATTCGTTTGG+AGG + Chr3:102117951-102117970 MsG0380017909.01.T01:CDS 35.0%
ACAAAGAGGAAGAGTTTCAT+TGG + Chr3:102120083-102120102 MsG0380017909.01.T01:CDS 35.0%
ACAGGTTCAATTGACGAATT+CGG + Chr3:102116536-102116555 MsG0380017909.01.T01:CDS 35.0%
ATAAGTTTGACAAAAGGGAG+GGG - Chr3:102118724-102118743 None:intergenic 35.0%
ATAGTAGAGAGTAGAGAAAC+TGG - Chr3:102118237-102118256 None:intergenic 35.0%
ATCTTGGTACCATCTTTACT+AGG - Chr3:102119433-102119452 None:intergenic 35.0%
ATTGCAAAACATGCACTTTC+CGG - Chr3:102117603-102117622 None:intergenic 35.0%
ATTTGGAGAAACCAAACACA+TGG + Chr3:102118845-102118864 MsG0380017909.01.T01:CDS 35.0%
CAATAAGTTTGACAAAAGGG+AGG - Chr3:102118726-102118745 None:intergenic 35.0%
CATAGAACAGAACAATAGCA+TGG + Chr3:102116296-102116315 MsG0380017909.01.T01:exon 35.0%
CATATCCATATAACAGACAC+GGG - Chr3:102119504-102119523 None:intergenic 35.0%
CATATGGGAATTGTTCAAAC+CGG - Chr3:102120265-102120284 None:intergenic 35.0%
CCAGTATTTGGTATGAAAAC+AGG + Chr3:102119265-102119284 MsG0380017909.01.T01:intron 35.0%
CCATATCCATATAACAGACA+CGG - Chr3:102119505-102119524 None:intergenic 35.0%
CTATTGTTAATCACCACCAT+TGG + Chr3:102120479-102120498 MsG0380017909.01.T01:intron 35.0%
CTTGCTTTAGTAATCTCCTA+TGG + Chr3:102118209-102118228 MsG0380017909.01.T01:intron 35.0%
GAGGAATTGTTACTGATGAT+GGG + Chr3:102117970-102117989 MsG0380017909.01.T01:CDS 35.0%
GCTCAATATGTCTATCCAAA+AGG - Chr3:102116964-102116983 None:intergenic 35.0%
GTGGCGTAAGAAAATAACTT+TGG - Chr3:102120624-102120643 None:intergenic 35.0%
GTTTGAACAATTCCCATATG+TGG + Chr3:102120265-102120284 MsG0380017909.01.T01:CDS 35.0%
TAAACTGTGCCAATGTCAAT+TGG - Chr3:102119018-102119037 None:intergenic 35.0%
TAACATTGAGATTCAGCTTC+AGG - Chr3:102120751-102120770 None:intergenic 35.0%
TAACTTCCATTTCAGCACTT+TGG + Chr3:102118268-102118287 MsG0380017909.01.T01:intron 35.0%
TACAGAAGAGATAGTGTCAT+TGG + Chr3:102120597-102120616 MsG0380017909.01.T01:intron 35.0%
TACATAACAGTGAGTTGCAA+AGG - Chr3:102118532-102118551 None:intergenic 35.0%
TATCCTGGCCTGAAATATTA+AGG + Chr3:102120122-102120141 MsG0380017909.01.T01:intron 35.0%
TATCCTTAATATTTCAGGCC+AGG - Chr3:102120128-102120147 None:intergenic 35.0%
TATGGCAACACTTCAAGAAA+GGG - Chr3:102118378-102118397 None:intergenic 35.0%
TATTTCTTAAGGGGAATGGT+TGG + Chr3:102120795-102120814 MsG0380017909.01.T01:intron 35.0%
TCACGTAATATCTTCAGATC+AGG - Chr3:102119141-102119160 None:intergenic 35.0%
TCTCTGTACAGATAAAGGAA+AGG - Chr3:102119884-102119903 None:intergenic 35.0%
TCTTGGTACCATCTTTACTA+GGG - Chr3:102119432-102119451 None:intergenic 35.0%
TGAATTCCTTTAGTCTGCAT+GGG + Chr3:102119322-102119341 MsG0380017909.01.T01:intron 35.0%
TGAGCCTGATACTTTATCAT+GGG + Chr3:102117396-102117415 MsG0380017909.01.T01:CDS 35.0%
TGCCTCCTAGAAAACAAATA+CGG - Chr3:102118154-102118173 None:intergenic 35.0%
TGTATGATTGTTCTTGGTAC+TGG + Chr3:102117746-102117765 MsG0380017909.01.T01:intron 35.0%
TGTCTGTTATATGGATATGG+TGG + Chr3:102119505-102119524 MsG0380017909.01.T01:CDS 35.0%
TGTGATGAATATATCTTCCG+TGG - Chr3:102118489-102118508 None:intergenic 35.0%
TTATGGCAACACTTCAAGAA+AGG - Chr3:102118379-102118398 None:intergenic 35.0%
TTATGTGCTTTCCACATTTC+AGG + Chr3:102119399-102119418 MsG0380017909.01.T01:intron 35.0%
TTATTTCCTGGCATAAGTTG+AGG + Chr3:102120868-102120887 MsG0380017909.01.T01:intron 35.0%
TTGAATTCCTTTAGTCTGCA+TGG + Chr3:102119321-102119340 MsG0380017909.01.T01:intron 35.0%
TTGGTTTCTCCAAATCTACT+CGG - Chr3:102118840-102118859 None:intergenic 35.0%
TTTGGAGAAACCAAACACAT+GGG + Chr3:102118846-102118865 MsG0380017909.01.T01:CDS 35.0%
! AATCAGGAGATATTTTGTGC+TGG + Chr3:102117916-102117935 MsG0380017909.01.T01:CDS 35.0%
! CATTTTACAGGATAGTTTGG+AGG + Chr3:102117207-102117226 MsG0380017909.01.T01:intron 35.0%
! CCTGTTTTCATACCAAATAC+TGG - Chr3:102119268-102119287 None:intergenic 35.0%
! CTCCTGTGGTTTTTATTGTT+TGG + Chr3:102121007-102121026 MsG0380017909.01.T01:intron 35.0%
! GTTTTTGTCCCTAGTAAAGA+TGG + Chr3:102119421-102119440 MsG0380017909.01.T01:CDS 35.0%
! TGTATCATTGTTGCTTGACT+TGG + Chr3:102119370-102119389 MsG0380017909.01.T01:intron 35.0%
! TTATTGGTAAGTGCTGTTAG+TGG + Chr3:102120219-102120238 MsG0380017909.01.T01:CDS 35.0%
! TTTGATGACTTCATTTCTGC+TGG + Chr3:102119682-102119701 MsG0380017909.01.T01:CDS 35.0%
!! AATTGTTACTGATGATGGGA+AGG + Chr3:102117974-102117993 MsG0380017909.01.T01:CDS 35.0%
!! CAGTAGTACAGTTTGTTAAC+TGG - Chr3:102118649-102118668 None:intergenic 35.0%
!! CTGCTTTTATACTGTAGAGA+TGG + Chr3:102117816-102117835 MsG0380017909.01.T01:intron 35.0%
!! GTTTGGTTTGAGAGAACTTA+TGG + Chr3:102116837-102116856 MsG0380017909.01.T01:intron 35.0%
!! TACCTGATTGACTTGAAACT+CGG - Chr3:102119190-102119209 None:intergenic 35.0%
!! TACTTATCGGCTCTTCTAAA+AGG - Chr3:102116639-102116658 None:intergenic 35.0%
!! TATAAAAGTGTTGCGTATCG+AGG + Chr3:102117363-102117382 MsG0380017909.01.T01:CDS 35.0%
!!! ACTCGGACTAGCTTATATTT+TGG - Chr3:102118823-102118842 None:intergenic 35.0%
!!! GTTGTTTCTCAACCATGTTT+TGG + Chr3:102120964-102120983 MsG0380017909.01.T01:intron 35.0%
AAACTGTTTGAGAGAGCTTC+TGG + Chr3:102116994-102117013 MsG0380017909.01.T01:intron 40.0%
ACCTTCGATGCATAACTTTC+TGG - Chr3:102119740-102119759 None:intergenic 40.0%
AGAAAGTTATGCATCGAAGG+TGG + Chr3:102119739-102119758 MsG0380017909.01.T01:CDS 40.0%
AGCAAAGGACATCACTTACT+TGG - Chr3:102117570-102117589 None:intergenic 40.0%
AGCTGGACACATGATAACAA+AGG + Chr3:102117518-102117537 MsG0380017909.01.T01:CDS 40.0%
AGGGACAAAAACCTGAAATG+TGG - Chr3:102119413-102119432 None:intergenic 40.0%
AGTACATCTTTGTCAGACTC+TGG - Chr3:102118883-102118902 None:intergenic 40.0%
AGTGAAAGTGAAAGCAAACC+TGG - Chr3:102116710-102116729 None:intergenic 40.0%
AGTGGTTGTTACCATCGATA+AGG - Chr3:102116408-102116427 None:intergenic 40.0%
ATACTGTAGAGATGGAGAAG+TGG + Chr3:102117824-102117843 MsG0380017909.01.T01:intron 40.0%
ATGATATCATGGACCAATGG+TGG - Chr3:102120495-102120514 None:intergenic 40.0%
ATGTGTAGCTTATGAACTCC+AGG - Chr3:102120543-102120562 None:intergenic 40.0%
ATTGTTACTCAGGTCATGCT+TGG + Chr3:102120038-102120057 MsG0380017909.01.T01:intron 40.0%
CAGATGAACCTCAAAATACG+AGG - Chr3:102120913-102120932 None:intergenic 40.0%
CATCAACTGCCAATTGACAT+TGG + Chr3:102119006-102119025 MsG0380017909.01.T01:CDS 40.0%
CCGTGTCTGTTATATGGATA+TGG + Chr3:102119502-102119521 MsG0380017909.01.T01:CDS 40.0%
CCTCCTAGAAAACAAATACG+GGG - Chr3:102118152-102118171 None:intergenic 40.0%
CCTTCGATGCATAACTTTCT+GGG - Chr3:102119739-102119758 None:intergenic 40.0%
CGGTTCCACAAATTTACCAT+AGG + Chr3:102119955-102119974 MsG0380017909.01.T01:CDS 40.0%
CTGAGCCTGATACTTTATCA+TGG + Chr3:102117395-102117414 MsG0380017909.01.T01:CDS 40.0%
CTGATGCTGAAGAAGTGAAA+GGG + Chr3:102116502-102116521 MsG0380017909.01.T01:CDS 40.0%
GAACAACGCATGACACAAAT+TGG - Chr3:102116210-102116229 None:intergenic 40.0%
GAACAATTCCCATATGTGGA+TGG + Chr3:102120269-102120288 MsG0380017909.01.T01:CDS 40.0%
GACATGATATCATGGACCAA+TGG - Chr3:102120498-102120517 None:intergenic 40.0%
GATATTGCAGAGGTTCGTTT+AGG - Chr3:102116326-102116345 None:intergenic 40.0%
GATGCATAACTTTCTGGGTT+GGG - Chr3:102119734-102119753 None:intergenic 40.0%
GATTGCTTTATGAACTCCTG+TGG + Chr3:102120993-102121012 MsG0380017909.01.T01:intron 40.0%
GCAAAGGACATCACTTACTT+GGG - Chr3:102117569-102117588 None:intergenic 40.0%
GCAATCTGTCTTCCAAAACA+TGG - Chr3:102120979-102120998 None:intergenic 40.0%
GCCTCCTAGAAAACAAATAC+GGG - Chr3:102118153-102118172 None:intergenic 40.0%
GGAGGAATTGTTACTGATGA+TGG + Chr3:102117969-102117988 MsG0380017909.01.T01:CDS 40.0%
GTGGTTGTTACCATCGATAA+GGG - Chr3:102116407-102116426 None:intergenic 40.0%
GTTACCATTTACAGCACATG+CGG - Chr3:102118911-102118930 None:intergenic 40.0%
GTTATCATGTGTCCAGCTAA+TGG - Chr3:102117516-102117535 None:intergenic 40.0%
TAAGCTACACATGCATGTTC+TGG + Chr3:102120551-102120570 MsG0380017909.01.T01:intron 40.0%
TAAGCTAGTCCGAGTAGATT+TGG + Chr3:102118828-102118847 MsG0380017909.01.T01:CDS 40.0%
TACAATGCGACTAACACTGA+AGG - Chr3:102119554-102119573 None:intergenic 40.0%
TACAGTTCCATCTTCACTCA+AGG - Chr3:102117263-102117282 None:intergenic 40.0%
TACTGCATTGCGAATATTCG+TGG + Chr3:102119598-102119617 MsG0380017909.01.T01:CDS 40.0%
TAGAAAACAAATACGGGGCA+GGG - Chr3:102118147-102118166 None:intergenic 40.0%
TCAGGTAAAGCATGAAAGAC+AGG - Chr3:102120733-102120752 None:intergenic 40.0%
TCAGGTCTCTGTACAGATAA+AGG - Chr3:102119889-102119908 None:intergenic 40.0%
TCCTCCTCTATATTAGCGAA+GGG + Chr3:102118617-102118636 MsG0380017909.01.T01:CDS 40.0%
TCCTTTGCTCACATTCTTTC+CGG + Chr3:102117581-102117600 MsG0380017909.01.T01:intron 40.0%
TCTGTCATTGACGATTACCA+TGG + Chr3:102116366-102116385 MsG0380017909.01.T01:CDS 40.0%
TGATAATTGTCATGCGACTG+TGG - Chr3:102120643-102120662 None:intergenic 40.0%
TTATGGTTGTGCAGACAAAG+AGG + Chr3:102120069-102120088 MsG0380017909.01.T01:CDS 40.0%
TTCTGTTCTATGCCGAAGAA+AGG - Chr3:102116288-102116307 None:intergenic 40.0%
TTGTTACCATCGATAAGGGT+CGG - Chr3:102116403-102116422 None:intergenic 40.0%
TTTACAAGCTTTCTGTCTCC+CGG + Chr3:102119081-102119100 MsG0380017909.01.T01:CDS 40.0%
! AATTGGCAGTTGATGCAACA+AGG - Chr3:102119001-102119020 None:intergenic 40.0%
! CATCTTCACTCAAGGCATTT+GGG - Chr3:102117255-102117274 None:intergenic 40.0%
! CTCACCCATGATAAAGTATC+AGG - Chr3:102117403-102117422 None:intergenic 40.0%
! CTTTTCGTCCATCCACATAT+GGG - Chr3:102120280-102120299 None:intergenic 40.0%
! GACATTTCATATGCTGCTTC+CGG + Chr3:102117034-102117053 MsG0380017909.01.T01:intron 40.0%
! TAGTTCCAGTGGTAGTGATT+GGG + Chr3:102117336-102117355 MsG0380017909.01.T01:CDS 40.0%
! TGTTGGTGCTTGCATAAATC+AGG + Chr3:102119780-102119799 MsG0380017909.01.T01:CDS 40.0%
! TTAGTTCCAGTGGTAGTGAT+TGG + Chr3:102117335-102117354 MsG0380017909.01.T01:CDS 40.0%
!! CTAAAAGGAGCATCATAACG+AGG - Chr3:102116624-102116643 None:intergenic 40.0%
!! GAAAGGGTTTGTTGAGAAAC+AGG + Chr3:102116518-102116537 MsG0380017909.01.T01:CDS 40.0%
!! TAATTTCTAGCAAAGGCACG+AGG - Chr3:102117431-102117450 None:intergenic 40.0%
!! TGATTGTTCTTGGTACTGGT+AGG + Chr3:102117750-102117769 MsG0380017909.01.T01:intron 40.0%
!!! CTCGTATTTTGAGGTTCATC+TGG + Chr3:102120911-102120930 MsG0380017909.01.T01:intron 40.0%
AAGCGCATAAGCCAAGTACT+TGG - Chr3:102117317-102117336 None:intergenic 45.0%
ACAGGACATTCTCTATGTCC+AGG + Chr3:102116689-102116708 MsG0380017909.01.T01:CDS 45.0%
ACCCTTCGCTAATATAGAGG+AGG - Chr3:102118621-102118640 None:intergenic 45.0%
AGAACATCAGCCCATGTGTT+TGG - Chr3:102118859-102118878 None:intergenic 45.0%
AGAGAATGTCCTGTGCTTGA+AGG - Chr3:102116683-102116702 None:intergenic 45.0%
AGTAGAGAAACTGGTCCCAT+AGG - Chr3:102118228-102118247 None:intergenic 45.0%
ATCATGTGTCCAGCTAATGG+AGG - Chr3:102117513-102117532 None:intergenic 45.0%
ATCGTCTATCAGTGCAACCT+GGG + Chr3:102119105-102119124 MsG0380017909.01.T01:CDS 45.0%
ATGCGACTAACACTGAAGGA+TGG - Chr3:102119550-102119569 None:intergenic 45.0%
ATGGAGAAGTGGTAGATGCT+GGG + Chr3:102117835-102117854 MsG0380017909.01.T01:CDS 45.0%
ATTGCGAATATTCGTGGTGG+TGG + Chr3:102119604-102119623 MsG0380017909.01.T01:CDS 45.0%
CACACCCTTCGCTAATATAG+AGG - Chr3:102118624-102118643 None:intergenic 45.0%
CATGCTTGGACCTCAGATTA+TGG + Chr3:102120052-102120071 MsG0380017909.01.T01:CDS 45.0%
CCAAATGCCTTGAGTGAAGA+TGG + Chr3:102117253-102117272 MsG0380017909.01.T01:CDS 45.0%
CCATATGTGGATGGACGAAA+AGG + Chr3:102120278-102120297 MsG0380017909.01.T01:CDS 45.0%
CCCAGAAAGTTATGCATCGA+AGG + Chr3:102119736-102119755 MsG0380017909.01.T01:CDS 45.0%
CCTGATGCTGAAGAAGTGAA+AGG + Chr3:102116501-102116520 MsG0380017909.01.T01:CDS 45.0%
CCTTTCACTTCTTCAGCATC+AGG - Chr3:102116504-102116523 None:intergenic 45.0%
CGATGCATAACTTTCTGGGT+TGG - Chr3:102119735-102119754 None:intergenic 45.0%
CTAGAAAACAAATACGGGGC+AGG - Chr3:102118148-102118167 None:intergenic 45.0%
CTCCTCCTCTATATTAGCGA+AGG + Chr3:102118616-102118635 MsG0380017909.01.T01:CDS 45.0%
CTGTGAGACAATCCCTTTGT+TGG + Chr3:102120429-102120448 MsG0380017909.01.T01:intron 45.0%
GAACAGAACAATAGCATGGG+TGG + Chr3:102116300-102116319 MsG0380017909.01.T01:exon 45.0%
GAGAATCCTCAACTTATGCC+AGG - Chr3:102120877-102120896 None:intergenic 45.0%
GAGTGAAGATGCCAAGTACT+TGG + Chr3:102117303-102117322 MsG0380017909.01.T01:CDS 45.0%
GTCTGCACAACCATAATCTG+AGG - Chr3:102120065-102120084 None:intergenic 45.0%
GTGCTTGCATAAATCAGGTC+TGG + Chr3:102119785-102119804 MsG0380017909.01.T01:intron 45.0%
GTGGAGAATATGGGGAAGAA+TGG + Chr3:102119623-102119642 MsG0380017909.01.T01:CDS 45.0%
TACGTGAAATTGCAGTCCCT+GGG + Chr3:102119154-102119173 MsG0380017909.01.T01:CDS 45.0%
TATCGTCTATCAGTGCAACC+TGG + Chr3:102119104-102119123 MsG0380017909.01.T01:CDS 45.0%
TCACACCCGTGTCTGTTATA+TGG + Chr3:102119496-102119515 MsG0380017909.01.T01:CDS 45.0%
TCCGGAAAGAATGTGAGCAA+AGG - Chr3:102117585-102117604 None:intergenic 45.0%
TCTTAAGGGGAATGGTTGGT+TGG + Chr3:102120799-102120818 MsG0380017909.01.T01:intron 45.0%
TGCATTGCGAATATTCGTGG+TGG + Chr3:102119601-102119620 MsG0380017909.01.T01:CDS 45.0%
TGGTGAATACCTTGTGTCCA+CGG + Chr3:102119702-102119721 MsG0380017909.01.T01:CDS 45.0%
TGTTAGTGGAAGCGGGATAA+TGG + Chr3:102120233-102120252 MsG0380017909.01.T01:CDS 45.0%
TTACGTGAAATTGCAGTCCC+TGG + Chr3:102119153-102119172 MsG0380017909.01.T01:CDS 45.0%
TTCTAGCAGCATAGACTGCA+TGG + Chr3:102120836-102120855 MsG0380017909.01.T01:intron 45.0%
TTGGCGTTATGGACATGCTA+CGG + Chr3:102119935-102119954 MsG0380017909.01.T01:CDS 45.0%
TTTGGGTCAAGCAAAACCTG+TGG - Chr3:102117238-102117257 None:intergenic 45.0%
! AGTCGGATTTAGGGTCTGTT+TGG + Chr3:102116778-102116797 MsG0380017909.01.T01:intron 45.0%
! ATTGGCTCATGTTGGCGTTA+TGG + Chr3:102119924-102119943 MsG0380017909.01.T01:CDS 45.0%
! CCATCTTCACTCAAGGCATT+TGG - Chr3:102117256-102117275 None:intergenic 45.0%
! CCTTTTCGTCCATCCACATA+TGG - Chr3:102120281-102120300 None:intergenic 45.0%
! CTCCGAGTTTCAAGTCAATC+AGG + Chr3:102119185-102119204 MsG0380017909.01.T01:CDS 45.0%
! GTAAGTGCTGTTAGTGGAAG+CGG + Chr3:102120225-102120244 MsG0380017909.01.T01:CDS 45.0%
! GTTGCACTGATAGACGATAC+CGG - Chr3:102119103-102119122 None:intergenic 45.0%
! TAAGTGCTGTTAGTGGAAGC+GGG + Chr3:102120226-102120245 MsG0380017909.01.T01:CDS 45.0%
! TCATCTGATTCAGGGCCTTT+TGG + Chr3:102116946-102116965 MsG0380017909.01.T01:intron 45.0%
! TTGCACTGATAGACGATACC+GGG - Chr3:102119102-102119121 None:intergenic 45.0%
!! AGCAATGGTGGACTTCTTGT+TGG + Chr3:102119763-102119782 MsG0380017909.01.T01:CDS 45.0%
!! ATTCGTGGTGGTGGAGAATA+TGG + Chr3:102119613-102119632 MsG0380017909.01.T01:CDS 45.0%
!! CCCCGTATTTGTTTTCTAGG+AGG + Chr3:102118149-102118168 MsG0380017909.01.T01:intron 45.0%
!! CTGCCCCGTATTTGTTTTCT+AGG + Chr3:102118146-102118165 MsG0380017909.01.T01:intron 45.0%
!! TTCGTGGTGGTGGAGAATAT+GGG + Chr3:102119614-102119633 MsG0380017909.01.T01:CDS 45.0%
!! TTTTTGGGCACGGATCAATC+AGG + Chr3:102117900-102117919 MsG0380017909.01.T01:CDS 45.0%
!!! AAAATTTAAGTTAAATAAAT+TGG - Chr3:102116898-102116917 None:intergenic 5.0%
AAATCGCCGACCCTTATCGA+TGG + Chr3:102116394-102116413 MsG0380017909.01.T01:CDS 50.0%
AATGCACAGCCAAAGAGCTC+AGG - Chr3:102119907-102119926 None:intergenic 50.0%
ACAGTGAGGACATGCAGCAT+CGG - Chr3:102119225-102119244 None:intergenic 50.0%
ATCAGTGCAACCTGGGAACA+GGG + Chr3:102119112-102119131 MsG0380017909.01.T01:CDS 50.0%
ATCGAAGGTGGAAGCAATGG+TGG + Chr3:102119751-102119770 MsG0380017909.01.T01:CDS 50.0%
CCTGTACCCATGCAGACTAA+AGG - Chr3:102119331-102119350 None:intergenic 50.0%
CCTTTAGTCTGCATGGGTAC+AGG + Chr3:102119328-102119347 MsG0380017909.01.T01:intron 50.0%
GACATCACTTACTTGGGTGC+TGG - Chr3:102117563-102117582 None:intergenic 50.0%
GAGCTGTTGAATGGGAAGTG+TGG - Chr3:102119840-102119859 None:intergenic 50.0%
GAGTCCGCATGTGCTGTAAA+TGG + Chr3:102118904-102118923 MsG0380017909.01.T01:CDS 50.0%
GATGGAGAAGTGGTAGATGC+TGG + Chr3:102117834-102117853 MsG0380017909.01.T01:CDS 50.0%
GCTTATGCGCTTAGTTCCAG+TGG + Chr3:102117325-102117344 MsG0380017909.01.T01:CDS 50.0%
GGGGAAGAATGGCATAAAGC+AGG + Chr3:102119634-102119653 MsG0380017909.01.T01:CDS 50.0%
GGTGAATACCTTGTGTCCAC+GGG + Chr3:102119703-102119722 MsG0380017909.01.T01:CDS 50.0%
GTACAGAGACCTGAGCTCTT+TGG + Chr3:102119895-102119914 MsG0380017909.01.T01:intron 50.0%
GTGCTTGAAGGCCAGTGTTA+TGG - Chr3:102116671-102116690 None:intergenic 50.0%
TAGTTTGGAGGGAGAACCAC+AGG + Chr3:102117219-102117238 MsG0380017909.01.T01:CDS 50.0%
TATCAGTGCAACCTGGGAAC+AGG + Chr3:102119111-102119130 MsG0380017909.01.T01:CDS 50.0%
TGAGCTCTTTGGCTGTGCAT+TGG + Chr3:102119906-102119925 MsG0380017909.01.T01:CDS 50.0%
TGCACGGCGTGAAGATAATG+TGG + Chr3:102119047-102119066 MsG0380017909.01.T01:CDS 50.0%
TGCATCGAAGGTGGAAGCAA+TGG + Chr3:102119748-102119767 MsG0380017909.01.T01:CDS 50.0%
! TGGGAAGTGTGGCCTAGAAA+TGG - Chr3:102119829-102119848 None:intergenic 50.0%
!! CTTACTTGGGTGCTGGATAG+CGG - Chr3:102117556-102117575 None:intergenic 50.0%
!! TAACACTGGCCTTCAAGCAC+AGG + Chr3:102116671-102116690 MsG0380017909.01.T01:CDS 50.0%
!! TCGTGGTGGTGGAGAATATG+GGG + Chr3:102119615-102119634 MsG0380017909.01.T01:CDS 50.0%
AACTCGGAGCGATCAAACCC+AGG - Chr3:102119174-102119193 None:intergenic 55.0%
ACTCGGAGCGATCAAACCCA+GGG - Chr3:102119173-102119192 None:intergenic 55.0%
AGTCGCCCAATCACTACCAC+TGG - Chr3:102117344-102117363 None:intergenic 55.0%
CGAACCTCTGCAATATCCCG+CGG + Chr3:102116329-102116348 MsG0380017909.01.T01:CDS 55.0%
GGGTATAACCCGTGGACACA+AGG - Chr3:102119714-102119733 None:intergenic 55.0%
! AGTGGAAGCGGGATAATGGC+AGG + Chr3:102120237-102120256 MsG0380017909.01.T01:CDS 55.0%
! GTGGAAGCGGGATAATGGCA+GGG + Chr3:102120238-102120257 MsG0380017909.01.T01:CDS 55.0%
! TCTGGGTTGGGTATAACCCG+TGG - Chr3:102119722-102119741 None:intergenic 55.0%
!! GGCTGTGCATTGGCTCATGT+TGG + Chr3:102119916-102119935 MsG0380017909.01.T01:CDS 55.0%
GATCAGGAGTCCCTGTTCCC+AGG - Chr3:102119125-102119144 None:intergenic 60.0%
! AGCGGGATAATGGCAGGGTC+CGG + Chr3:102120243-102120262 MsG0380017909.01.T01:CDS 60.0%
!! GGTCGGCGATTTTGACGCCA+TGG - Chr3:102116386-102116405 None:intergenic 60.0%
AGAGTCGTCTCTGCGAGCCG+CGG - Chr3:102116349-102116368 None:intergenic 65.0%
CGAGCCGCGGGATATTGCAG+AGG - Chr3:102116336-102116355 None:intergenic 65.0%
GAGTCGTCTCTGCGAGCCGC+GGG - Chr3:102116348-102116367 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 102116189 102121086 102116189 ID=MsG0380017909.01;Name=MsG0380017909.01
Chr3 mRNA 102116189 102121086 102116189 ID=MsG0380017909.01.T01;Parent=MsG0380017909.01;Name=MsG0380017909.01.T01;_AED=0.29;_eAED=0.32;_QI=126|0.72|0.91|1|1|1|12|0|657
Chr3 exon 102116189 102116415 102116189 ID=MsG0380017909.01.T01:exon:13247;Parent=MsG0380017909.01.T01
Chr3 exon 102116491 102116710 102116491 ID=MsG0380017909.01.T01:exon:13248;Parent=MsG0380017909.01.T01
Chr3 exon 102117217 102117417 102117217 ID=MsG0380017909.01.T01:exon:13249;Parent=MsG0380017909.01.T01
Chr3 exon 102117500 102117570 102117500 ID=MsG0380017909.01.T01:exon:13250;Parent=MsG0380017909.01.T01
Chr3 exon 102117833 102117995 102117833 ID=MsG0380017909.01.T01:exon:13251;Parent=MsG0380017909.01.T01
Chr3 exon 102118613 102119206 102118613 ID=MsG0380017909.01.T01:exon:13252;Parent=MsG0380017909.01.T01
Chr3 exon 102119421 102119801 102119421 ID=MsG0380017909.01.T01:exon:13253;Parent=MsG0380017909.01.T01
Chr3 exon 102119901 102119976 102119901 ID=MsG0380017909.01.T01:exon:13254;Parent=MsG0380017909.01.T01
Chr3 exon 102120050 102120113 102120050 ID=MsG0380017909.01.T01:exon:13255;Parent=MsG0380017909.01.T01
Chr3 exon 102120212 102120313 102120212 ID=MsG0380017909.01.T01:exon:13256;Parent=MsG0380017909.01.T01
Chr3 exon 102121086 102121086 102121086 ID=MsG0380017909.01.T01:exon:13257;Parent=MsG0380017909.01.T01
Chr3 five_prime_UTR 102116189 102116314 102116189 ID=MsG0380017909.01.T01:five_prime_utr;Parent=MsG0380017909.01.T01
Chr3 CDS 102116315 102116415 102116315 ID=MsG0380017909.01.T01:cds;Parent=MsG0380017909.01.T01
Chr3 CDS 102116491 102116710 102116491 ID=MsG0380017909.01.T01:cds;Parent=MsG0380017909.01.T01
Chr3 CDS 102117217 102117417 102117217 ID=MsG0380017909.01.T01:cds;Parent=MsG0380017909.01.T01
Chr3 CDS 102117500 102117570 102117500 ID=MsG0380017909.01.T01:cds;Parent=MsG0380017909.01.T01
Chr3 CDS 102117833 102117995 102117833 ID=MsG0380017909.01.T01:cds;Parent=MsG0380017909.01.T01
Chr3 CDS 102118613 102119206 102118613 ID=MsG0380017909.01.T01:cds;Parent=MsG0380017909.01.T01
Chr3 CDS 102119421 102119801 102119421 ID=MsG0380017909.01.T01:cds;Parent=MsG0380017909.01.T01
Chr3 CDS 102119901 102119976 102119901 ID=MsG0380017909.01.T01:cds;Parent=MsG0380017909.01.T01
Chr3 CDS 102120050 102120113 102120050 ID=MsG0380017909.01.T01:cds;Parent=MsG0380017909.01.T01
Chr3 CDS 102120212 102120313 102120212 ID=MsG0380017909.01.T01:cds;Parent=MsG0380017909.01.T01
Chr3 CDS 102121086 102121086 102121086 ID=MsG0380017909.01.T01:cds;Parent=MsG0380017909.01.T01
Gene Sequence

>MsG0380017909.01.T01

ATGGGTGGCCTAAACGAACCTCTGCAATATCCCGCGGCTCGCAGAGACGACTCTGTCATTGACGATTACCATGGCGTCAAAATCGCCGACCCTTATCGATGGCTGGAAGATCCTGATGCTGAAGAAGTGAAAGGGTTTGTTGAGAAACAGGTTCAATTGACGAATTCGGTGATTCAGCAATGCGAAACAAGATCCAAACTTAACGAAACAATCACAAAGCTATTTGATCATCCTCGTTATGATGCTCCTTTTAGAAGAGCCGATAAGTACTTTTACTTCCATAACACTGGCCTTCAAGCACAGGACATTCTCTATGTCCAGGATAGTTTGGAGGGAGAACCACAGGTTTTGCTTGACCCAAATGCCTTGAGTGAAGATGGAACTGTATCATTGAACACATTTTCGGTGAGTGAAGATGCCAAGTACTTGGCTTATGCGCTTAGTTCCAGTGGTAGTGATTGGGCGACTATAAAAGTGTTGCGTATCGAGGACAAGAATGCTGAGCCTGATACTTTATCATGGGTTAAATTTTCCTCCATTAGCTGGACACATGATAACAAAGGTTTCTTTTATAGCCGCTATCCAGCACCCAAAGATGGAGAAGTGGTAGATGCTGGGACTGAAACGAACTCTAACCTTTATCATATGCTTTATTATCATTTTTTGGGCACGGATCAATCAGGAGATATTTTGTGCTGGAAAGATCATGAAAACCCTAAATATTCGTTTGGAGGAATTGTTACTGATGATGGGAAGTATCTCCTCCTCTATATTAGCGAAGGGTGTGATCCAGTTAACAAACTGTACTACTGTGACATGTCTGATCTTCACAGCATATTCAAAAGTTTTCATAGTGCAAATTCTCCCCTCCCTTTTGTCAAACTTATTGATAATTTTGATGCAAAGTATGATTACATTGCAAATGATGACAGCGTGTTTACATTTTTAACTAATAAGGATGCTCCAAAATATAAGCTAGTCCGAGTAGATTTGGAGAAACCAAACACATGGGCTGATGTTCTGCCAGAGTCTGACAAAGATGTACTTGAGTCCGCATGTGCTGTAAATGGTAACCAACTGATAGTAAGTTACTTGAGTGATGTGAAGCATCTTATACAAGTAAGAGACTTAAAATCAGGTTCCTTGTTGCATCAACTGCCAATTGACATTGGCACAGTTTATGATATTTCTGCACGGCGTGAAGATAATGTGGTTTTCATTAGCTTTACAAGCTTTCTGTCTCCCGGTATCGTCTATCAGTGCAACCTGGGAACAGGGACTCCTGATCTGAAGATATTACGTGAAATTGCAGTCCCTGGGTTTGATCGCTCCGAGTTTCAAGTCAATCAGGTTTTTGTCCCTAGTAAAGATGGTACCAAGATCCCAATGTTCATTGTTGCGAAAAAGGATATTGTTTTGGATGGTTCACACCCGTGTCTGTTATATGGATATGGTGGTTTTAACATCAGTATTACACCATCCTTCAGTGTTAGTCGCATTGTACTCACAAAACATTTAGGTTTTGTTTACTGCATTGCGAATATTCGTGGTGGTGGAGAATATGGGGAAGAATGGCATAAAGCAGGTTCCCTTGCTAAAAAACAGAATTGCTTTGATGACTTCATTTCTGCTGGTGAATACCTTGTGTCCACGGGTTATACCCAACCCAGAAAGTTATGCATCGAAGGTGGAAGCAATGGTGGACTTCTTGTTGGTGCTTGCATAAATCAGAGACCTGAGCTCTTTGGCTGTGCATTGGCTCATGTTGGCGTTATGGACATGCTACGGTTCCACAAATTTACCATAGGTCATGCTTGGACCTCAGATTATGGTTGTGCAGACAAAGAGGAAGAGTTTCATTGGCTAATCAACGGAAAATTATTGGTAAGTGCTGTTAGTGGAAGCGGGATAATGGCAGGGTCCGGTTTGAACAATTCCCATATGTGGATGGACGAAAAGGTTGCTTTTCACTAG
Protein sequence

>MsG0380017909.01.T01

MGGLNEPLQYPAARRDDSVIDDYHGVKIADPYRWLEDPDAEEVKGFVEKQVQLTNSVIQQCETRSKLNETITKLFDHPRYDAPFRRADKYFYFHNTGLQAQDILYVQDSLEGEPQVLLDPNALSEDGTVSLNTFSVSEDAKYLAYALSSSGSDWATIKVLRIEDKNAEPDTLSWVKFSSISWTHDNKGFFYSRYPAPKDGEVVDAGTETNSNLYHMLYYHFLGTDQSGDILCWKDHENPKYSFGGIVTDDGKYLLLYISEGCDPVNKLYYCDMSDLHSIFKSFHSANSPLPFVKLIDNFDAKYDYIANDDSVFTFLTNKDAPKYKLVRVDLEKPNTWADVLPESDKDVLESACAVNGNQLIVSYLSDVKHLIQVRDLKSGSLLHQLPIDIGTVYDISARREDNVVFISFTSFLSPGIVYQCNLGTGTPDLKILREIAVPGFDRSEFQVNQVFVPSKDGTKIPMFIVAKKDIVLDGSHPCLLYGYGGFNISITPSFSVSRIVLTKHLGFVYCIANIRGGGEYGEEWHKAGSLAKKQNCFDDFISAGEYLVSTGYTQPRKLCIEGGSNGGLLVGACINQRPELFGCALAHVGVMDMLRFHKFTIGHAWTSDYGCADKEEEFHWLINGKLLVSAVSGSGIMAGSGLNNSHMWMDEKVAFH*