Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380017922.01.T01 | XP_013462255.1 | 93.75 | 320 | 10 | 2 | 1 | 312 | 1 | 318 | 0 | 593 |
MsG0380017922.01.T02 | XP_013462255.1 | 96.273 | 322 | 8 | 2 | 1 | 322 | 1 | 318 | 0 | 617 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380017922.01.T01 | A0A072VDQ3 | 93.750 | 320 | 10 | 2 | 1 | 312 | 1 | 318 | 0.0 | 593 |
MsG0380017922.01.T02 | A0A072VDQ3 | 96.273 | 322 | 8 | 2 | 1 | 322 | 1 | 318 | 0.0 | 617 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0380017922.01 | MsG0880047494.01 | 0.808076 | 3.698513e-50 | 2.094659e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380017922.01.T01 | MTR_3g115150 | 93.750 | 320 | 10 | 2 | 1 | 312 | 1 | 318 | 0.0 | 593 |
MsG0380017922.01.T01 | MTR_8g074510 | 26.421 | 299 | 192 | 8 | 25 | 309 | 3 | 287 | 7.25e-24 | 99.0 |
MsG0380017922.01.T01 | MTR_8g074450 | 29.431 | 299 | 181 | 8 | 27 | 309 | 5 | 289 | 7.58e-24 | 99.0 |
MsG0380017922.01.T01 | MTR_5g023290 | 30.063 | 316 | 183 | 10 | 20 | 309 | 5 | 308 | 1.40e-23 | 98.6 |
MsG0380017922.01.T01 | MTR_5g023600 | 27.891 | 294 | 190 | 8 | 27 | 311 | 6 | 286 | 2.99e-23 | 97.4 |
MsG0380017922.01.T01 | MTR_5g023390 | 26.441 | 295 | 195 | 7 | 26 | 311 | 5 | 286 | 4.14e-23 | 97.1 |
MsG0380017922.01.T01 | MTR_5g023520 | 26.962 | 293 | 191 | 7 | 27 | 309 | 5 | 284 | 4.09e-22 | 94.4 |
MsG0380017922.01.T01 | MTR_5g023370 | 27.119 | 295 | 193 | 7 | 26 | 311 | 5 | 286 | 5.74e-22 | 94.0 |
MsG0380017922.01.T01 | MTR_5g023550 | 26.370 | 292 | 193 | 7 | 27 | 309 | 5 | 283 | 7.14e-22 | 93.6 |
MsG0380017922.01.T01 | MTR_8g074530 | 26.733 | 303 | 198 | 7 | 20 | 309 | 13 | 304 | 1.54e-21 | 92.8 |
MsG0380017922.01.T01 | MTR_5g023580 | 26.027 | 292 | 194 | 7 | 26 | 306 | 5 | 285 | 7.11e-21 | 92.0 |
MsG0380017922.01.T01 | MTR_5g023320 | 26.280 | 293 | 192 | 7 | 26 | 309 | 5 | 282 | 1.05e-20 | 90.1 |
MsG0380017922.01.T01 | MTR_5g023340 | 26.936 | 297 | 191 | 8 | 26 | 311 | 5 | 286 | 1.49e-20 | 90.1 |
MsG0380017922.01.T01 | MTR_5g023350 | 26.190 | 294 | 195 | 7 | 27 | 311 | 6 | 286 | 3.00e-20 | 89.0 |
MsG0380017922.01.T01 | MTR_5g023470 | 26.421 | 299 | 189 | 9 | 27 | 311 | 6 | 287 | 6.44e-20 | 88.2 |
MsG0380017922.01.T01 | MTR_5g023530 | 26.421 | 299 | 189 | 9 | 27 | 311 | 6 | 287 | 7.26e-20 | 88.2 |
MsG0380017922.01.T01 | MTR_8g074380 | 27.451 | 306 | 180 | 8 | 20 | 310 | 5 | 283 | 1.53e-19 | 87.8 |
MsG0380017922.01.T01 | MTR_8g074420 | 25.430 | 291 | 199 | 7 | 29 | 309 | 7 | 289 | 2.57e-18 | 84.0 |
MsG0380017922.01.T01 | MTR_5g023650 | 28.896 | 308 | 193 | 9 | 20 | 309 | 5 | 304 | 1.82e-17 | 81.6 |
MsG0380017922.01.T01 | MTR_4g070570 | 27.632 | 304 | 189 | 12 | 23 | 308 | 11 | 301 | 3.05e-14 | 72.4 |
MsG0380017922.01.T01 | MTR_4g070590 | 26.599 | 297 | 193 | 7 | 27 | 308 | 13 | 299 | 3.63e-14 | 72.0 |
MsG0380017922.01.T01 | MTR_3g116950 | 28.333 | 300 | 178 | 9 | 28 | 308 | 13 | 294 | 1.71e-13 | 70.1 |
MsG0380017922.01.T02 | MTR_3g115150 | 96.273 | 322 | 8 | 2 | 1 | 322 | 1 | 318 | 0.0 | 617 |
MsG0380017922.01.T02 | MTR_8g074510 | 26.230 | 305 | 195 | 7 | 25 | 319 | 3 | 287 | 2.71e-24 | 100 |
MsG0380017922.01.T02 | MTR_5g023290 | 29.141 | 326 | 183 | 10 | 20 | 319 | 5 | 308 | 6.62e-23 | 97.1 |
MsG0380017922.01.T02 | MTR_8g074450 | 28.205 | 312 | 178 | 9 | 27 | 319 | 5 | 289 | 7.08e-23 | 96.7 |
MsG0380017922.01.T02 | MTR_5g023390 | 25.902 | 305 | 194 | 7 | 26 | 321 | 5 | 286 | 8.02e-23 | 96.3 |
MsG0380017922.01.T02 | MTR_5g023600 | 26.885 | 305 | 189 | 9 | 27 | 321 | 6 | 286 | 7.74e-22 | 93.6 |
MsG0380017922.01.T02 | MTR_5g023370 | 26.557 | 305 | 192 | 7 | 26 | 321 | 5 | 286 | 8.74e-22 | 93.6 |
MsG0380017922.01.T02 | MTR_5g023550 | 25.828 | 302 | 192 | 7 | 27 | 319 | 5 | 283 | 1.30e-21 | 93.2 |
MsG0380017922.01.T02 | MTR_8g074530 | 27.742 | 310 | 196 | 7 | 20 | 319 | 13 | 304 | 1.62e-21 | 93.2 |
MsG0380017922.01.T02 | MTR_5g023520 | 25.987 | 304 | 190 | 8 | 27 | 319 | 5 | 284 | 4.46e-21 | 91.7 |
MsG0380017922.01.T02 | MTR_5g023580 | 25.497 | 302 | 193 | 7 | 26 | 316 | 5 | 285 | 1.62e-20 | 91.3 |
MsG0380017922.01.T02 | MTR_5g023320 | 25.743 | 303 | 191 | 7 | 26 | 319 | 5 | 282 | 1.70e-20 | 89.7 |
MsG0380017922.01.T02 | MTR_5g023470 | 25.806 | 310 | 187 | 9 | 27 | 321 | 6 | 287 | 6.16e-20 | 88.6 |
MsG0380017922.01.T02 | MTR_5g023530 | 25.806 | 310 | 187 | 9 | 27 | 321 | 6 | 287 | 6.47e-20 | 88.2 |
MsG0380017922.01.T02 | MTR_5g023340 | 25.974 | 308 | 190 | 9 | 26 | 321 | 5 | 286 | 1.31e-19 | 87.4 |
MsG0380017922.01.T02 | MTR_5g023350 | 25.246 | 305 | 194 | 8 | 27 | 321 | 6 | 286 | 5.13e-19 | 85.9 |
MsG0380017922.01.T02 | MTR_8g074380 | 25.962 | 312 | 187 | 8 | 20 | 320 | 5 | 283 | 7.90e-18 | 83.2 |
MsG0380017922.01.T02 | MTR_8g074420 | 25.253 | 297 | 202 | 7 | 29 | 319 | 7 | 289 | 1.36e-17 | 82.0 |
MsG0380017922.01.T02 | MTR_5g023650 | 27.987 | 318 | 193 | 9 | 20 | 319 | 5 | 304 | 5.97e-16 | 77.4 |
MsG0380017922.01.T02 | MTR_4g070570 | 26.861 | 309 | 195 | 12 | 23 | 318 | 11 | 301 | 8.66e-14 | 71.2 |
MsG0380017922.01.T02 | MTR_4g070590 | 26.367 | 311 | 186 | 9 | 27 | 318 | 13 | 299 | 7.73e-13 | 68.2 |
MsG0380017922.01.T02 | MTR_3g116950 | 26.144 | 306 | 187 | 9 | 28 | 318 | 13 | 294 | 1.73e-12 | 67.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380017922.01.T01 | AT1G76240 | 50.318 | 314 | 144 | 6 | 1 | 309 | 1 | 307 | 1.46e-91 | 275 |
MsG0380017922.01.T01 | AT4G35690 | 26.557 | 305 | 177 | 10 | 25 | 309 | 6 | 283 | 5.78e-16 | 77.0 |
MsG0380017922.01.T01 | AT2G17680 | 22.297 | 296 | 209 | 4 | 25 | 309 | 6 | 291 | 4.34e-13 | 68.9 |
MsG0380017922.01.T01 | AT2G17080 | 27.241 | 290 | 174 | 12 | 25 | 308 | 3 | 261 | 8.85e-12 | 64.7 |
MsG0380017922.01.T02 | AT1G76240 | 49.383 | 324 | 142 | 7 | 1 | 319 | 1 | 307 | 5.01e-92 | 276 |
MsG0380017922.01.T02 | AT4G35690 | 25.243 | 309 | 186 | 9 | 25 | 319 | 6 | 283 | 1.52e-14 | 73.2 |
MsG0380017922.01.T02 | AT2G17680 | 22.549 | 306 | 206 | 6 | 25 | 319 | 6 | 291 | 1.20e-12 | 67.8 |
Find 48 sgRNAs with CRISPR-Local
Find 64 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGAATGAGGTTGAAAATAT+TGG | 0.175753 | 3:-102222939 | MsG0380017922.01.T02:CDS |
GAAATTGAGAAACTAGTTTC+TGG | 0.253232 | 3:-102223245 | MsG0380017922.01.T02:CDS |
TGAATGAGGTTGAAAATATT+GGG | 0.300162 | 3:-102222938 | MsG0380017922.01.T02:CDS |
TTTGAAGAGAATGCGTGATT+TGG | 0.333464 | 3:-102222877 | MsG0380017922.01.T02:CDS |
AGATCTGCAGGGAAGACTTA+TGG | 0.351494 | 3:+102223631 | None:intergenic |
TAAGTGATAAAATCGATGTT+TGG | 0.364434 | 3:+102223360 | None:intergenic |
GATGGTAACGGAGTGATTCT+TGG | 0.376872 | 3:+102223444 | None:intergenic |
CTTCGCTTTGTCGACGCATA+CGG | 0.404825 | 3:-102223389 | MsG0380017922.01.T02:CDS |
TGAAGATGTTATGAGTTTAA+CGG | 0.407218 | 3:-102223102 | MsG0380017922.01.T02:CDS |
AGGAGATGAAGAAGTGAGAT+CGG | 0.408389 | 3:-102222901 | MsG0380017922.01.T02:CDS |
CGGAGTGATTCTTGGGTTTG+TGG | 0.421094 | 3:+102223452 | None:intergenic |
TGGGAGTGGGAGTGTGAAGA+AGG | 0.423027 | 3:-102222994 | MsG0380017922.01.T02:CDS |
ATCTTCACCAACGTTGTTGT+CGG | 0.425550 | 3:-102223156 | MsG0380017922.01.T02:CDS |
ATTCTTGGGTTTGTGGAAGT+TGG | 0.430423 | 3:+102223459 | None:intergenic |
GAAGAGAATGCGTGATTTGG+AGG | 0.434203 | 3:-102222874 | MsG0380017922.01.T02:CDS |
ATGGTAACGGAGTGATTCTT+GGG | 0.438222 | 3:+102223445 | None:intergenic |
GTTGAAAAGTGCAACGGAAA+CGG | 0.438385 | 3:+102223076 | None:intergenic |
AGATCAACGGCCTAAAATCT+TGG | 0.445608 | 3:-102223580 | MsG0380017922.01.T02:CDS |
ACAAAACTATCTACTGCGAC+AGG | 0.456371 | 3:+102222766 | None:intergenic |
AGCTAAGAAGAAGTTGAGTA+AGG | 0.460120 | 3:-102223267 | MsG0380017922.01.T02:CDS |
GTGTGAAGAAGGAGTTAGAA+GGG | 0.462335 | 3:-102222983 | MsG0380017922.01.T02:CDS |
TCTTTGATCTGAGAAATTAA+CGG | 0.462431 | 3:+102223605 | None:intergenic |
CACTCCGTTACCATCCTCAA+TGG | 0.463038 | 3:-102223436 | MsG0380017922.01.T02:CDS |
CTGATGTGGTGTGATATTTG+TGG | 0.465349 | 3:+102223656 | None:intergenic |
GTGAAAATGGTTAGAAAAGG+TGG | 0.469956 | 3:-102223014 | MsG0380017922.01.T02:CDS |
GATTTGGAGGAAAATATTTG+TGG | 0.475588 | 3:-102222861 | MsG0380017922.01.T02:CDS |
AATTAACGGATGAGATCTGC+AGG | 0.492265 | 3:+102223619 | None:intergenic |
ATGGTTAGAAAAGGTGGGAG+TGG | 0.500067 | 3:-102223008 | MsG0380017922.01.T02:CDS |
AGAAGCTTCTCTACCCATTG+AGG | 0.507010 | 3:+102223422 | None:intergenic |
AGTGTGAAGAAGGAGTTAGA+AGG | 0.514189 | 3:-102222984 | MsG0380017922.01.T02:CDS |
TGGTTAGAAAAGGTGGGAGT+GGG | 0.523053 | 3:-102223007 | MsG0380017922.01.T02:CDS |
AGGGATTGAAGAAATTCAGA+AGG | 0.529234 | 3:-102222964 | MsG0380017922.01.T02:CDS |
GTTTCAGATAGTGTTGAACT+TGG | 0.529487 | 3:-102223134 | MsG0380017922.01.T02:CDS |
TGGGTGAAAATGGTTAGAAA+AGG | 0.542255 | 3:-102223017 | MsG0380017922.01.T02:CDS |
ACTCCGTTACCATCCTCAAT+GGG | 0.554255 | 3:-102223435 | MsG0380017922.01.T02:CDS |
TGAAAATGGTTAGAAAAGGT+GGG | 0.588109 | 3:-102223013 | MsG0380017922.01.T02:CDS |
TCTTATAGCAATTTGAACTG+AGG | 0.591722 | 3:+102223325 | None:intergenic |
TTTGAGAAGAGTTAAACCGT+TGG | 0.602266 | 3:+102223511 | None:intergenic |
CTACCCATTGAGGATGGTAA+CGG | 0.608388 | 3:+102223432 | None:intergenic |
GCTTCTCTACCCATTGAGGA+TGG | 0.611571 | 3:+102223426 | None:intergenic |
GAAGAGTTAAACCGTTGGAG+AGG | 0.625937 | 3:+102223516 | None:intergenic |
CAGATCAAAGATGAGATCAA+CGG | 0.634724 | 3:-102223593 | MsG0380017922.01.T02:CDS |
CAAAACTATCTACTGCGACA+GGG | 0.639011 | 3:+102222767 | None:intergenic |
TCTGAAACCGACAACAACGT+TGG | 0.654496 | 3:+102223149 | None:intergenic |
TACCCCGTTGAAAAGTGCAA+CGG | 0.658908 | 3:+102223070 | None:intergenic |
TGACATTGAGATTCACACAA+CGG | 0.687777 | 3:+102223219 | None:intergenic |
GAAGACTTATGGATCTGATG+TGG | 0.712826 | 3:+102223642 | None:intergenic |
ATTAACGGATGAGATCTGCA+GGG | 0.748059 | 3:+102223620 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | ATTGGGAATTTGAAAAAGAA+AGG | - | Chr3:102223577-102223596 | MsG0380017922.01.T02:CDS | 25.0% |
! | TAAGTGATAAAATCGATGTT+TGG | + | Chr3:102223141-102223160 | None:intergenic | 25.0% |
! | TCTTTGATCTGAGAAATTAA+CGG | + | Chr3:102222896-102222915 | None:intergenic | 25.0% |
! | TGAAGATGTTATGAGTTTAA+CGG | - | Chr3:102223396-102223415 | MsG0380017922.01.T02:CDS | 25.0% |
! | TGAATGAGGTTGAAAATATT+GGG | - | Chr3:102223560-102223579 | MsG0380017922.01.T02:CDS | 25.0% |
! | TTGAATGAGGTTGAAAATAT+TGG | - | Chr3:102223559-102223578 | MsG0380017922.01.T02:CDS | 25.0% |
GATTTGGAGGAAAATATTTG+TGG | - | Chr3:102223637-102223656 | MsG0380017922.01.T02:CDS | 30.0% | |
TCTTATAGCAATTTGAACTG+AGG | + | Chr3:102223176-102223195 | None:intergenic | 30.0% | |
TGAAAATGGTTAGAAAAGGT+GGG | - | Chr3:102223485-102223504 | MsG0380017922.01.T02:CDS | 30.0% | |
! | GAAATTGAGAAACTAGTTTC+TGG | - | Chr3:102223253-102223272 | MsG0380017922.01.T02:CDS | 30.0% |
! | GATATTTGTGGTTTTTGTGA+TGG | + | Chr3:102222833-102222852 | None:intergenic | 30.0% |
! | TGCTTCAAAGAGATTTTCAT+GGG | - | Chr3:102223462-102223481 | MsG0380017922.01.T02:CDS | 30.0% |
! | TGGAATTACTCCAAGATTTT+AGG | + | Chr3:102222931-102222950 | None:intergenic | 30.0% |
! | TTGCTTCAAAGAGATTTTCA+TGG | - | Chr3:102223461-102223480 | MsG0380017922.01.T02:CDS | 30.0% |
!!! | AATTCAGAAGGTTTTGAATG+AGG | - | Chr3:102223546-102223565 | MsG0380017922.01.T02:CDS | 30.0% |
AGCTAAGAAGAAGTTGAGTA+AGG | - | Chr3:102223231-102223250 | MsG0380017922.01.T02:CDS | 35.0% | |
AGGGATTGAAGAAATTCAGA+AGG | - | Chr3:102223534-102223553 | MsG0380017922.01.T02:CDS | 35.0% | |
CAGATCAAAGATGAGATCAA+CGG | - | Chr3:102222905-102222924 | MsG0380017922.01.T02:CDS | 35.0% | |
GTGAAAATGGTTAGAAAAGG+TGG | - | Chr3:102223484-102223503 | MsG0380017922.01.T02:CDS | 35.0% | |
TGACATTGAGATTCACACAA+CGG | + | Chr3:102223282-102223301 | None:intergenic | 35.0% | |
TGGGTGAAAATGGTTAGAAA+AGG | - | Chr3:102223481-102223500 | MsG0380017922.01.T02:CDS | 35.0% | |
TTTGAAGAGAATGCGTGATT+TGG | - | Chr3:102223621-102223640 | MsG0380017922.01.T02:CDS | 35.0% | |
TTTGAGAAGAGTTAAACCGT+TGG | + | Chr3:102222990-102223009 | None:intergenic | 35.0% | |
! | GAGATTTTCATGGGTGAAAA+TGG | - | Chr3:102223471-102223490 | MsG0380017922.01.T02:CDS | 35.0% |
! | GTTTCAGATAGTGTTGAACT+TGG | - | Chr3:102223364-102223383 | MsG0380017922.01.T02:CDS | 35.0% |
!! | TAGTGGTTGAGATTTTGAAG+TGG | + | Chr3:102222951-102222970 | None:intergenic | 35.0% |
!! | TTTGTGGTTTTTGTGATGGA+CGG | + | Chr3:102222829-102222848 | None:intergenic | 35.0% |
AGATCAACGGCCTAAAATCT+TGG | - | Chr3:102222918-102222937 | MsG0380017922.01.T02:CDS | 40.0% | |
AGGAGATGAAGAAGTGAGAT+CGG | - | Chr3:102223597-102223616 | MsG0380017922.01.T02:CDS | 40.0% | |
AGTGTGAAGAAGGAGTTAGA+AGG | - | Chr3:102223514-102223533 | MsG0380017922.01.T02:CDS | 40.0% | |
ATCTTCACCAACGTTGTTGT+CGG | - | Chr3:102223342-102223361 | MsG0380017922.01.T02:CDS | 40.0% | |
ATTCTTGGGTTTGTGGAAGT+TGG | + | Chr3:102223042-102223061 | None:intergenic | 40.0% | |
CTGATGTGGTGTGATATTTG+TGG | + | Chr3:102222845-102222864 | None:intergenic | 40.0% | |
GAAGACTTATGGATCTGATG+TGG | + | Chr3:102222859-102222878 | None:intergenic | 40.0% | |
GTGTGAAGAAGGAGTTAGAA+GGG | - | Chr3:102223515-102223534 | MsG0380017922.01.T02:CDS | 40.0% | |
! | AATTAACGGATGAGATCTGC+AGG | + | Chr3:102222882-102222901 | None:intergenic | 40.0% |
! | ATTAACGGATGAGATCTGCA+GGG | + | Chr3:102222881-102222900 | None:intergenic | 40.0% |
! | GTTGAAAAGTGCAACGGAAA+CGG | + | Chr3:102223425-102223444 | None:intergenic | 40.0% |
! | GTTTCCGTTGCACTTTTCAA+CGG | - | Chr3:102223424-102223443 | MsG0380017922.01.T02:CDS | 40.0% |
! | TAAACCGTTGGAGAGGTTTT+TGG | + | Chr3:102222978-102222997 | None:intergenic | 40.0% |
! | TTTCCGTTGCACTTTTCAAC+GGG | - | Chr3:102223425-102223444 | MsG0380017922.01.T02:CDS | 40.0% |
!! | ATGGTAACGGAGTGATTCTT+GGG | + | Chr3:102223056-102223075 | None:intergenic | 40.0% |
ACGTCCAAAAACCTCTCCAA+CGG | - | Chr3:102222971-102222990 | MsG0380017922.01.T02:CDS | 45.0% | |
ACTCCGTTACCATCCTCAAT+GGG | - | Chr3:102223063-102223082 | MsG0380017922.01.T02:CDS | 45.0% | |
AGAAGCTTCTCTACCCATTG+AGG | + | Chr3:102223079-102223098 | None:intergenic | 45.0% | |
AGATCTGCAGGGAAGACTTA+TGG | + | Chr3:102222870-102222889 | None:intergenic | 45.0% | |
ATGGTTAGAAAAGGTGGGAG+TGG | - | Chr3:102223490-102223509 | MsG0380017922.01.T02:CDS | 45.0% | |
CTACCCATTGAGGATGGTAA+CGG | + | Chr3:102223069-102223088 | None:intergenic | 45.0% | |
GAAGAGTTAAACCGTTGGAG+AGG | + | Chr3:102222985-102223004 | None:intergenic | 45.0% | |
TGGTTAGAAAAGGTGGGAGT+GGG | - | Chr3:102223491-102223510 | MsG0380017922.01.T02:CDS | 45.0% | |
! | GAAGAGAATGCGTGATTTGG+AGG | - | Chr3:102223624-102223643 | MsG0380017922.01.T02:CDS | 45.0% |
! | GGACGGTTGGGATTTTTGTT+TGG | + | Chr3:102222812-102222831 | None:intergenic | 45.0% |
! | TACCCCGTTGAAAAGTGCAA+CGG | + | Chr3:102223431-102223450 | None:intergenic | 45.0% |
! | TCTGAAACCGACAACAACGT+TGG | + | Chr3:102223352-102223371 | None:intergenic | 45.0% |
! | TTCCGTTGCACTTTTCAACG+GGG | - | Chr3:102223426-102223445 | MsG0380017922.01.T02:CDS | 45.0% |
!! | GAGAGGTTTTTGGACGTTAG+TGG | + | Chr3:102222968-102222987 | None:intergenic | 45.0% |
!! | GATGGTAACGGAGTGATTCT+TGG | + | Chr3:102223057-102223076 | None:intergenic | 45.0% |
!!! | GGTTTTTGTGATGGACGGTT+GGG | + | Chr3:102222824-102222843 | None:intergenic | 45.0% |
!!! | TGGTTTTTGTGATGGACGGT+TGG | + | Chr3:102222825-102222844 | None:intergenic | 45.0% |
CACTCCGTTACCATCCTCAA+TGG | - | Chr3:102223062-102223081 | MsG0380017922.01.T02:CDS | 50.0% | |
CGGAGTGATTCTTGGGTTTG+TGG | + | Chr3:102223049-102223068 | None:intergenic | 50.0% | |
CTTCGCTTTGTCGACGCATA+CGG | - | Chr3:102223109-102223128 | MsG0380017922.01.T02:CDS | 50.0% | |
GCTTCTCTACCCATTGAGGA+TGG | + | Chr3:102223075-102223094 | None:intergenic | 50.0% | |
! | TGGGAGTGGGAGTGTGAAGA+AGG | - | Chr3:102223504-102223523 | MsG0380017922.01.T02:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr3 | gene | 102222776 | 102223744 | 102222776 | ID=MsG0380017922.01;Name=MsG0380017922.01 |
Chr3 | mRNA | 102222776 | 102223744 | 102222776 | ID=MsG0380017922.01.T01;Parent=MsG0380017922.01;Name=MsG0380017922.01.T01;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|0|0|2|0|312 |
Chr3 | exon | 102222776 | 102223166 | 102222776 | ID=MsG0380017922.01.T01:exon:35956;Parent=MsG0380017922.01.T01 |
Chr3 | exon | 102223197 | 102223744 | 102223197 | ID=MsG0380017922.01.T01:exon:35955;Parent=MsG0380017922.01.T01 |
Chr3 | CDS | 102223197 | 102223744 | 102223197 | ID=MsG0380017922.01.T01:cds;Parent=MsG0380017922.01.T01 |
Chr3 | CDS | 102222776 | 102223166 | 102222776 | ID=MsG0380017922.01.T01:cds;Parent=MsG0380017922.01.T01 |
Chr3 | mRNA | 102222776 | 102223744 | 102222776 | ID=MsG0380017922.01.T02;Parent=MsG0380017922.01;Name=MsG0380017922.01.T02;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|322 |
Chr3 | exon | 102222776 | 102223744 | 102222776 | ID=MsG0380017922.01.T02:exon:35957;Parent=MsG0380017922.01.T02 |
Chr3 | CDS | 102222776 | 102223744 | 102222776 | ID=MsG0380017922.01.T02:cds;Parent=MsG0380017922.01.T02 |
Gene Sequence |
Protein sequence |