AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017942.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017942.01.T01 MTR_3g115560 94.382 267 15 0 1 267 263 529 0.0 517
MsG0380017942.01.T01 MTR_3g115560 94.382 267 15 0 1 267 100 366 0.0 517
MsG0380017942.01.T01 MTR_3g115560 94.382 267 15 0 1 267 149 415 0.0 516
MsG0380017942.01.T01 MTR_3g052530 41.837 98 48 2 75 167 343 436 2.50e-19 87.8
MsG0380017942.01.T01 MTR_3g052530 41.837 98 48 2 75 167 302 395 2.51e-19 87.8
MsG0380017942.01.T01 MTR_3g052530 41.837 98 48 2 75 167 343 436 2.62e-19 87.8
MsG0380017942.01.T01 MTR_3g052530 41.837 98 48 2 75 167 346 439 2.73e-19 87.8
MsG0380017942.01.T01 MTR_3g052530 41.837 98 48 2 75 167 302 395 3.03e-19 87.8
MsG0380017942.01.T01 MTR_3g052530 41.837 98 48 2 75 167 305 398 3.31e-19 87.4
MsG0380017942.01.T01 MTR_5g093070 44.565 92 50 1 77 167 404 495 4.89e-18 84.0
MsG0380017942.01.T02 MTR_3g115560 94.382 267 15 0 1 267 263 529 0.0 517
MsG0380017942.01.T02 MTR_3g115560 94.382 267 15 0 1 267 100 366 0.0 517
MsG0380017942.01.T02 MTR_3g115560 94.382 267 15 0 1 267 149 415 0.0 516
MsG0380017942.01.T02 MTR_3g052530 41.837 98 48 2 75 167 343 436 2.50e-19 87.8
MsG0380017942.01.T02 MTR_3g052530 41.837 98 48 2 75 167 302 395 2.51e-19 87.8
MsG0380017942.01.T02 MTR_3g052530 41.837 98 48 2 75 167 343 436 2.62e-19 87.8
MsG0380017942.01.T02 MTR_3g052530 41.837 98 48 2 75 167 346 439 2.73e-19 87.8
MsG0380017942.01.T02 MTR_3g052530 41.837 98 48 2 75 167 302 395 3.03e-19 87.8
MsG0380017942.01.T02 MTR_3g052530 41.837 98 48 2 75 167 305 398 3.31e-19 87.4
MsG0380017942.01.T02 MTR_5g093070 44.565 92 50 1 77 167 404 495 4.89e-18 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017942.01.T01 AT1G20670 42.000 200 105 4 17 206 324 522 4.67e-42 152
MsG0380017942.01.T01 AT1G76380 45.033 151 78 3 20 168 299 446 3.67e-32 124
MsG0380017942.01.T01 AT1G76380 45.033 151 78 3 20 168 300 447 4.12e-32 124
MsG0380017942.01.T01 AT1G76380 45.033 151 78 3 20 168 299 446 4.70e-32 124
MsG0380017942.01.T01 AT5G55040 38.125 160 89 4 16 167 322 479 7.64e-22 95.5
MsG0380017942.01.T01 AT5G55040 38.125 160 89 4 16 167 322 479 7.64e-22 95.5
MsG0380017942.01.T02 AT1G20670 42.000 200 105 4 17 206 324 522 4.67e-42 152
MsG0380017942.01.T02 AT1G76380 45.033 151 78 3 20 168 299 446 3.67e-32 124
MsG0380017942.01.T02 AT1G76380 45.033 151 78 3 20 168 300 447 4.12e-32 124
MsG0380017942.01.T02 AT1G76380 45.033 151 78 3 20 168 299 446 4.70e-32 124
MsG0380017942.01.T02 AT5G55040 38.125 160 89 4 16 167 322 479 7.64e-22 95.5
MsG0380017942.01.T02 AT5G55040 38.125 160 89 4 16 167 322 479 7.64e-22 95.5

Find 91 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACTTGCTATGACTTAAA+TGG 0.158414 3:-102485009 MsG0380017942.01.T01:three_prime_UTR
TATGACTTAAATGGGATAAT+AGG 0.196729 3:-102485000 MsG0380017942.01.T01:three_prime_UTR
TTGCCACCAGGACATGAATT+TGG 0.239266 3:-102485629 MsG0380017942.01.T01:CDS
CAGACCTTGGTCCTGTTGTT+TGG 0.280885 3:-102485682 MsG0380017942.01.T01:CDS
GACCAAGGTCTGCAGCAAAA+TGG 0.288108 3:+102485693 None:intergenic
TGCCTGGATTCATTTCGTTT+TGG 0.338969 3:+102485417 None:intergenic
CAATTTACTAGCCTGGAATC+TGG 0.350063 3:-102485110 MsG0380017942.01.T01:three_prime_UTR
TGAAACAGAATTCTGTTTAG+TGG 0.353566 3:+102485028 None:intergenic
AAATAGTACTATTGAACATT+TGG 0.354983 3:+102484538 None:intergenic
CATAGCTGCAGTGCAAGATT+TGG 0.367378 3:+102484929 None:intergenic
ACTATTTCATTACGTCAGTT+TGG 0.367740 3:-102484522 MsG0380017942.01.T02:three_prime_UTR
ATGACTTAAATGGGATAATA+GGG 0.374449 3:-102484999 MsG0380017942.01.T01:three_prime_UTR
GGTTAGCCTTGCCGACTTAA+CGG 0.392393 3:-102485271 MsG0380017942.01.T01:three_prime_UTR
GTGGATCAAATCCAGATTCC+AGG 0.405488 3:+102485099 None:intergenic
GGTAATGTTCCTCAAATGTT+TGG 0.406474 3:-102485235 MsG0380017942.01.T01:three_prime_UTR
CAAGGCTTACTGAAAACGTT+TGG 0.412443 3:-102485066 MsG0380017942.01.T01:three_prime_UTR
GTTAGCCTTGCCGACTTAAC+GGG 0.414760 3:-102485270 MsG0380017942.01.T01:three_prime_UTR
ACCAAGGTCTGCAGCAAAAT+GGG 0.418822 3:+102485694 None:intergenic
TCACTTGCTATGACTTAAAT+GGG 0.433631 3:-102485008 MsG0380017942.01.T01:three_prime_UTR
ACATGAATTTGGTCCTGGTT+GGG 0.435620 3:-102485618 MsG0380017942.01.T01:CDS
GCTGTCGGATTTATATTTGT+AGG 0.442124 3:+102485177 None:intergenic
TTCTCTCATGCAAATACATC+AGG 0.449223 3:-102485482 MsG0380017942.01.T01:CDS
ATTCCAGGCTAGTAAATTGT+TGG 0.449986 3:+102485114 None:intergenic
ATGGCGCACTCTGATGATTT+CGG 0.450026 3:-102485338 MsG0380017942.01.T01:CDS
TATCAGAAGCTCTCAGAAGC+TGG 0.451268 3:-102484694 MsG0380017942.01.T01:three_prime_UTR
CTGAATCCTCCCATGAATCA+TGG 0.454198 3:+102485370 None:intergenic
CCTTGGTCCTGTTGTTTGGA+AGG 0.460026 3:-102485678 MsG0380017942.01.T01:CDS
ATTCCAACAATTTACTAGCC+TGG 0.469857 3:-102485117 MsG0380017942.01.T01:three_prime_UTR
AGGAGAAAGTTAAAGTTCAA+TGG 0.469884 3:-102484840 MsG0380017942.01.T01:intron
TTCGGCTCTAATCGTCGGTT+AGG 0.471854 3:-102485320 MsG0380017942.01.T01:CDS
TCCCATGTTGATGAATAAGA+TGG 0.473387 3:-102484749 MsG0380017942.01.T01:three_prime_UTR
GTCACAGAGGCATCACTTTG+CGG 0.479207 3:-102485579 MsG0380017942.01.T01:CDS
AATCCAGGCAGCAGTGTTAG+TGG 0.482990 3:-102485404 MsG0380017942.01.T01:CDS
CTTCTATAATCCTCTGGTAC+AGG 0.483665 3:+102485530 None:intergenic
GCAGCAACCTTCCAAACAAC+AGG 0.487200 3:+102485671 None:intergenic
TATGACCGACAGGCTGTTTG+TGG 0.489662 3:+102485205 None:intergenic
CACAGTCCAATGTGGGAGAC+TGG 0.495774 3:-102484965 MsG0380017942.01.T01:three_prime_UTR
CCACCACTAACACTGCTGCC+TGG 0.496243 3:+102485401 None:intergenic
GCATGAGAGAACGTACTTGA+CGG 0.497187 3:+102485494 None:intergenic
GACATGAATTTGGTCCTGGT+TGG 0.497261 3:-102485619 MsG0380017942.01.T01:CDS
CCAGGACATGAATTTGGTCC+TGG 0.501079 3:-102485623 MsG0380017942.01.T01:CDS
TACCAAAACGAAATGAATCC+AGG 0.501690 3:-102485419 MsG0380017942.01.T01:CDS
TACCATGTTTACAGATCGAT+TGG 0.505158 3:-102484601 MsG0380017942.01.T01:three_prime_UTR
ATCAGCAGTGCTTTGCCACC+AGG 0.505197 3:-102485641 MsG0380017942.01.T01:CDS
AGGCTAACCATTGTCATTTG+AGG 0.506789 3:+102485285 None:intergenic
GGTATCCATCCAAACATTTG+AGG 0.518130 3:+102485226 None:intergenic
AAATAGAAGTACAAAGGTAA+AGG 0.519394 3:+102484647 None:intergenic
GGGAACGAATCCATGATTCA+TGG 0.524206 3:-102485380 MsG0380017942.01.T01:CDS
GCAAGATTTGGCTGCAGCTG+AGG 0.525862 3:+102484941 None:intergenic
AGATCGATTGGTATAAGCTC+AGG 0.529448 3:-102484589 MsG0380017942.01.T01:three_prime_UTR
CCAGGACCAAATTCATGTCC+TGG 0.532413 3:+102485623 None:intergenic
AATCTGCTTCTATAATCCTC+TGG 0.533471 3:+102485524 None:intergenic
ATGTTCCTCAAATGTTTGGA+TGG 0.534449 3:-102485231 MsG0380017942.01.T01:three_prime_UTR
GCCCATCTTATTCATCAACA+TGG 0.537499 3:+102484747 None:intergenic
AAATCATCAGAGTGCGCCAT+GGG 0.548960 3:+102485341 None:intergenic
GGTCTGCAGCAAAATGGGCT+AGG 0.550301 3:+102485699 None:intergenic
CTTAACGGGTCTTCAAATGC+TGG 0.554423 3:-102485256 MsG0380017942.01.T01:three_prime_UTR
ATCAGAAGCTCTCAGAAGCT+GGG 0.555963 3:-102484693 MsG0380017942.01.T01:three_prime_UTR
GAATTGAGCTTGAGAGCTGT+CGG 0.560251 3:+102485162 None:intergenic
CTTACTGAAAACGTTTGGCA+AGG 0.568496 3:-102485061 MsG0380017942.01.T01:three_prime_UTR
ATGATTTCGGCTCTAATCGT+CGG 0.571444 3:-102485325 MsG0380017942.01.T01:CDS
GGAACGAATCCATGATTCAT+GGG 0.571686 3:-102485379 MsG0380017942.01.T01:CDS
GAGGATTCAGCAGGAACCCA+TGG 0.572639 3:-102485357 MsG0380017942.01.T01:CDS
GTAGGTGCAATATGACCGAC+AGG 0.575069 3:+102485195 None:intergenic
GATTCATGGGAGGATTCAGC+AGG 0.581773 3:-102485366 MsG0380017942.01.T01:CDS
CCCATGTTGATGAATAAGAT+GGG 0.582002 3:-102484748 MsG0380017942.01.T01:three_prime_UTR
TTGTTTGGAAGGTTGCTGCT+AGG 0.583808 3:-102485667 MsG0380017942.01.T01:CDS
GAAGTAAAATAGAAGTACAA+AGG 0.586639 3:+102484641 None:intergenic
CCCATCTTATTCATCAACAT+GGG 0.605219 3:+102484748 None:intergenic
CATTTGAAGACCCGTTAAGT+CGG 0.606205 3:+102485260 None:intergenic
CGTGAAAATGTCATGTCATG+AGG 0.607446 3:-102484860 MsG0380017942.01.T01:intron
GAGAACGTACTTGACGGAGA+AGG 0.617039 3:+102485500 None:intergenic
AATACATCAGGCTTGCAAAG+TGG 0.619518 3:-102485470 MsG0380017942.01.T01:CDS
CAGGCAGCAGTGTTAGTGGT+GGG 0.621785 3:-102485400 MsG0380017942.01.T01:CDS
TGGGAATGTCATGTCATGAG+AGG 0.622133 3:+102484767 None:intergenic
TCATCATCAGATACCCAACC+AGG 0.623145 3:+102485605 None:intergenic
CAAATTCGCACAGTCCAATG+TGG 0.623489 3:-102484973 MsG0380017942.01.T01:three_prime_UTR
TTCAGACACTCCTGTACCAG+AGG 0.627628 3:-102485540 MsG0380017942.01.T01:CDS
CCAGGCAGCAGTGTTAGTGG+TGG 0.629642 3:-102485401 MsG0380017942.01.T01:CDS
TACCAATCGATCTGTAAACA+TGG 0.633629 3:+102484599 None:intergenic
GAAATCATCAGAGTGCGCCA+TGG 0.639814 3:+102485340 None:intergenic
GAAGACCCGTTAAGTCGGCA+AGG 0.640817 3:+102485265 None:intergenic
TAAGCCTTGAGAAAATCTTG+TGG 0.643090 3:+102485080 None:intergenic
TGAGGACCAGTCTCCCACAT+TGG 0.644458 3:+102484959 None:intergenic
AAATTCGCACAGTCCAATGT+GGG 0.650923 3:-102484972 MsG0380017942.01.T01:three_prime_UTR
AAAACTACTACTATGTGACT+AGG 0.666303 3:+102484815 None:intergenic
ACGAATCCATGATTCATGGG+AGG 0.685064 3:-102485376 MsG0380017942.01.T01:CDS
CCTTCCAAACAACAGGACCA+AGG 0.685350 3:+102485678 None:intergenic
GGACCAAATTCATGTCCTGG+TGG 0.694584 3:+102485626 None:intergenic
GGATACCACAAACAGCCTGT+CGG 0.696394 3:-102485210 MsG0380017942.01.T01:three_prime_UTR
CTGATGATGATGTGTCACAG+AGG 0.800292 3:-102485592 MsG0380017942.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTAAATTAAATAATTT+GGG - Chr3:102485194-102485213 MsG0380017942.01.T01:three_prime_UTR 0.0%
!! TTTATTTAAATTAAATAATT+TGG - Chr3:102485193-102485212 MsG0380017942.01.T01:three_prime_UTR 0.0%
!! AAATAAAAAAGAAGATAATT+AGG + Chr3:102485349-102485368 None:intergenic 10.0%
!! AATAAAAAAGAAGATAATTA+GGG + Chr3:102485348-102485367 None:intergenic 10.0%
!! ATTTAAATTAAATAATTTGG+GGG - Chr3:102485196-102485215 MsG0380017942.01.T01:three_prime_UTR 10.0%
!! ATATTCAAATGAATGAATAA+TGG + Chr3:102486445-102486464 None:intergenic 15.0%
!! ATTATCATAAATTTCTTTGT+GGG - Chr3:102485394-102485413 MsG0380017942.01.T01:CDS 15.0%
!! TAAATATATCAAAACCTAAA+CGG + Chr3:102485167-102485186 None:intergenic 15.0%
!! TATTATCATAAATTTCTTTG+TGG - Chr3:102485393-102485412 MsG0380017942.01.T01:CDS 15.0%
!! TATTCAAATGAATGAATAAT+GGG + Chr3:102486444-102486463 None:intergenic 15.0%
!!! ATGATATATTATTTTTCAGA+TGG - Chr3:102488655-102488674 MsG0380017942.01.T01:intron 15.0%
!!! TGATATATTATTTTTCAGAT+GGG - Chr3:102488656-102488675 MsG0380017942.01.T01:intron 15.0%
!!! TTTTTGTTTTCTTTTATGTT+TGG - Chr3:102485843-102485862 MsG0380017942.01.T01:intron 15.0%
!! AAATAGTACTATTGAACATT+TGG + Chr3:102489026-102489045 None:intergenic 20.0%
!! AAGAAACAAAAACTCTTAAT+TGG - Chr3:102484761-102484780 MsG0380017942.01.T01:intron 20.0%
!! ACATTAAGTTTGTATATAGA+AGG - Chr3:102486537-102486556 MsG0380017942.01.T01:intron 20.0%
!! ATTCAAATGAATGAATAATG+GGG + Chr3:102486443-102486462 None:intergenic 20.0%
!! ATTGAAATTGAAAAGGTTTA+AGG + Chr3:102484968-102484987 None:intergenic 20.0%
!!! ACTTCTATTTTACTTCAATA+TGG - Chr3:102488927-102488946 MsG0380017942.01.T01:five_prime_UTR 20.0%
!!! ATAGAATTGATAATTGGATT+AGG + Chr3:102484945-102484964 None:intergenic 20.0%
!!! ATGAATCATTTTTCTCAAAT+GGG - Chr3:102485631-102485650 MsG0380017942.01.T01:CDS 20.0%
!!! TATGAATCATTTTTCTCAAA+TGG - Chr3:102485630-102485649 MsG0380017942.01.T01:CDS 20.0%
!!! TTAAGGATAGAATTGATAAT+TGG + Chr3:102484951-102484970 None:intergenic 20.0%
!!! TTAATTTTTGCATTCCTTAT+TGG - Chr3:102485248-102485267 MsG0380017942.01.T01:three_prime_UTR 20.0%
!!! TTTTCTTAGATTATAACCAT+TGG + Chr3:102487276-102487295 None:intergenic 20.0%
! ATAAAAAAATTCACCTCTTC+TGG + Chr3:102485951-102485970 None:intergenic 25.0%
! ATAATTCAAGTGATAGGAAT+TGG + Chr3:102486006-102486025 None:intergenic 25.0%
! ATATAGAAGGTTTGCAAAAT+TGG - Chr3:102486550-102486569 MsG0380017942.01.T01:intron 25.0%
! ATGACTTAAATGGGATAATA+GGG - Chr3:102488562-102488581 MsG0380017942.01.T01:intron 25.0%
! ATTGTCATAATTCAAGTGAT+AGG + Chr3:102486012-102486031 None:intergenic 25.0%
! CATTCCAATAAATACAGAAT+TGG + Chr3:102487436-102487455 None:intergenic 25.0%
! TAATTCAAGTGATAGGAATT+GGG + Chr3:102486005-102486024 None:intergenic 25.0%
! TATCATTCCTTCTTTAAATG+TGG - Chr3:102486977-102486996 MsG0380017942.01.T01:intron 25.0%
! TATGACAGAAAAATGAGATT+TGG + Chr3:102488844-102488863 None:intergenic 25.0%
! TATGACTTAAATGGGATAAT+AGG - Chr3:102488561-102488580 MsG0380017942.01.T01:intron 25.0%
! TGAACAAATGAATAGTAACA+AGG + Chr3:102486203-102486222 None:intergenic 25.0%
! TTAACGATATCATGATAATC+AGG + Chr3:102486056-102486075 None:intergenic 25.0%
! TTCAAATGAATGAATAATGG+GGG + Chr3:102486442-102486461 None:intergenic 25.0%
! TTGTCCAATTCTGTATTTAT+TGG - Chr3:102487429-102487448 MsG0380017942.01.T01:intron 25.0%
!! AAATAGAAGTACAAAGGTAA+AGG + Chr3:102488917-102488936 None:intergenic 25.0%
!! ATCATAACCATTTTGTAGAA+AGG - Chr3:102485893-102485912 MsG0380017942.01.T01:intron 25.0%
!! ATTGATAATTGGATTAGGAT+TGG + Chr3:102484940-102484959 None:intergenic 25.0%
!! GAAGTAAAATAGAAGTACAA+AGG + Chr3:102488923-102488942 None:intergenic 25.0%
!! TTTACATCAACTTTTGGTAA+AGG - Chr3:102486677-102486696 MsG0380017942.01.T01:five_prime_UTR 25.0%
!! TTTTACTTCAATATGGATGT+TGG - Chr3:102488934-102488953 MsG0380017942.01.T01:five_prime_UTR 25.0%
!!! TTGCTTTTTACATCAACTTT+TGG - Chr3:102486671-102486690 MsG0380017942.01.T01:five_prime_UTR 25.0%
!!! TTTTTTTATTGTGTGTTGAC+AGG - Chr3:102485705-102485724 MsG0380017942.01.T01:CDS 25.0%
AAAACTACTACTATGTGACT+AGG + Chr3:102488749-102488768 None:intergenic 30.0%
ACTATAAGGAAGAAATTGGA+TGG - Chr3:102486095-102486114 MsG0380017942.01.T01:intron 30.0%
ACTATTTCATTACGTCAGTT+TGG - Chr3:102489039-102489058 MsG0380017942.01.T01:five_prime_UTR 30.0%
AGAATTGGACAAAACTAGAA+AGG + Chr3:102487421-102487440 None:intergenic 30.0%
AGGAGAAAGTTAAAGTTCAA+TGG - Chr3:102488721-102488740 MsG0380017942.01.T01:five_prime_UTR 30.0%
ATTAATCCCACTTACATTTG+TGG - Chr3:102486734-102486753 MsG0380017942.01.T01:intron 30.0%
CTATAAGGAAGAAATTGGAT+GGG - Chr3:102486096-102486115 MsG0380017942.01.T01:intron 30.0%
CTATTTCATTACGTCAGTTT+GGG - Chr3:102489040-102489059 MsG0380017942.01.T01:five_prime_UTR 30.0%
CTTATAGTTCCATAATCCAT+CGG + Chr3:102486083-102486102 None:intergenic 30.0%
GAATGAATACTCGTTGAATT+TGG - Chr3:102485122-102485141 MsG0380017942.01.T01:three_prime_UTR 30.0%
GAGGGAAATTGAAATTGAAA+AGG + Chr3:102484975-102484994 None:intergenic 30.0%
TATAAGGAAGAAATTGGATG+GGG - Chr3:102486097-102486116 MsG0380017942.01.T01:intron 30.0%
TGAAACAGAATTCTGTTTAG+TGG + Chr3:102488536-102488555 None:intergenic 30.0%
TGGAACTATAAGGAAGAAAT+TGG - Chr3:102486091-102486110 MsG0380017942.01.T01:intron 30.0%
TGTAAACCAACCTGATATAA+AGG + Chr3:102487818-102487837 None:intergenic 30.0%
TTAGACACCACATTTAAAGA+AGG + Chr3:102486987-102487006 None:intergenic 30.0%
TTATAGTTCCATAATCCATC+GGG + Chr3:102486082-102486101 None:intergenic 30.0%
TTTGGTAAAGGTCAAATATC+TGG - Chr3:102486689-102486708 MsG0380017942.01.T01:intron 30.0%
! AAATGGGTTCTTCTTACATA+TGG - Chr3:102485647-102485666 MsG0380017942.01.T01:CDS 30.0%
! AATGGGTTCTTCTTACATAT+GGG - Chr3:102485648-102485667 MsG0380017942.01.T01:CDS 30.0%
! ATGGGGATTGTTGATTAAAT+TGG + Chr3:102484702-102484721 None:intergenic 30.0%
! ATTTTCACCTCAAATGACAA+TGG - Chr3:102488269-102488288 MsG0380017942.01.T01:intron 30.0%
! GAACTGTTTTCCTTTATATC+AGG - Chr3:102487805-102487824 MsG0380017942.01.T01:five_prime_UTR 30.0%
! TGGGGATTGTTGATTAAATT+GGG + Chr3:102484701-102484720 None:intergenic 30.0%
! TGTTTTCCTTTATATCAGGT+TGG - Chr3:102487809-102487828 MsG0380017942.01.T01:five_prime_UTR 30.0%
!! TCACTTGCTATGACTTAAAT+GGG - Chr3:102488553-102488572 MsG0380017942.01.T01:intron 30.0%
!! TTCACTTGCTATGACTTAAA+TGG - Chr3:102488552-102488571 MsG0380017942.01.T01:intron 30.0%
!! TTTAGGCATTGATTTGATGA+TGG - Chr3:102485489-102485508 MsG0380017942.01.T01:CDS 30.0%
!!! AGAGACTTGACTTTTTTCTT+AGG - Chr3:102487012-102487031 MsG0380017942.01.T01:intron 30.0%
AAATGTCAAACGCTAAAACG+AGG + Chr3:102486372-102486391 None:intergenic 35.0%
AAGCGCTCAAAAAAGTCATT+GGG - Chr3:102487170-102487189 MsG0380017942.01.T01:intron 35.0%
AAGTGATTAGGGTGAAATTG+GGG + Chr3:102484837-102484856 None:intergenic 35.0%
AATCTGCTTCTATAATCCTC+TGG + Chr3:102488040-102488059 None:intergenic 35.0%
AGAATGGAGAATAATGCAGT+TGG + Chr3:102484809-102484828 None:intergenic 35.0%
AGATACTATTTACCATCGTC+AGG - Chr3:102486923-102486942 MsG0380017942.01.T01:intron 35.0%
AGTAAGTGGGGGAATATTAA+TGG - Chr3:102485679-102485698 MsG0380017942.01.T01:CDS 35.0%
AGTTCCAAAGGCTTTCTTAT+TGG - Chr3:102487769-102487788 MsG0380017942.01.T01:intron 35.0%
ATAAGGAAGAAATTGGATGG+GGG - Chr3:102486098-102486117 MsG0380017942.01.T01:intron 35.0%
ATGGGTTCTTCTTACATATG+GGG - Chr3:102485649-102485668 MsG0380017942.01.T01:CDS 35.0%
ATGTTCCTCAAATGTTTGGA+TGG - Chr3:102488330-102488349 MsG0380017942.01.T01:intron 35.0%
ATTCCAACAATTTACTAGCC+TGG - Chr3:102488444-102488463 MsG0380017942.01.T01:intron 35.0%
ATTCCAGGCTAGTAAATTGT+TGG + Chr3:102488450-102488469 None:intergenic 35.0%
ATTCTGCAAAAACAAAGCAG+CGG + Chr3:102486859-102486878 None:intergenic 35.0%
CAATTTCACCCTAATCACTT+CGG - Chr3:102484837-102484856 MsG0380017942.01.T01:intron 35.0%
CCCATCTTATTCATCAACAT+GGG + Chr3:102488816-102488835 None:intergenic 35.0%
CTTACATTTGTGGTAACTCA+AGG - Chr3:102486744-102486763 MsG0380017942.01.T01:intron 35.0%
CTTCTTTCCATACCTTAACA+CGG + Chr3:102487509-102487528 None:intergenic 35.0%
GAAGTGATTAGGGTGAAATT+GGG + Chr3:102484838-102484857 None:intergenic 35.0%
GAATGGAGAATAATGCAGTT+GGG + Chr3:102484808-102484827 None:intergenic 35.0%
GAGTTACCACAAATGTAAGT+GGG + Chr3:102486743-102486762 None:intergenic 35.0%
GCTGTCGGATTTATATTTGT+AGG + Chr3:102488387-102488406 None:intergenic 35.0%
GGATATATGTTTGACCGTTT+AGG - Chr3:102485150-102485169 MsG0380017942.01.T01:three_prime_UTR 35.0%
GGTAATGTTCCTCAAATGTT+TGG - Chr3:102488326-102488345 MsG0380017942.01.T01:intron 35.0%
GTTACCAATAAGAAAGCCTT+TGG + Chr3:102487776-102487795 None:intergenic 35.0%
TAAGCCTTGAGAAAATCTTG+TGG + Chr3:102488484-102488503 None:intergenic 35.0%
TACCAAAACGAAATGAATCC+AGG - Chr3:102488142-102488161 MsG0380017942.01.T01:intron 35.0%
TACCAATCGATCTGTAAACA+TGG + Chr3:102488965-102488984 None:intergenic 35.0%
TACCATGTTTACAGATCGAT+TGG - Chr3:102488960-102488979 MsG0380017942.01.T01:five_prime_UTR 35.0%
TACTCGTTGAATTTGGAAAC+TGG - Chr3:102485129-102485148 MsG0380017942.01.T01:three_prime_UTR 35.0%
TATAACCTCCACTGTTTGAT+TGG + Chr3:102487343-102487362 None:intergenic 35.0%
TGACGATGGTAAATAGTATC+TGG + Chr3:102486924-102486943 None:intergenic 35.0%
TGAGTTACCACAAATGTAAG+TGG + Chr3:102486744-102486763 None:intergenic 35.0%
TGATATCGTTAAAAACCCGA+TGG - Chr3:102486064-102486083 MsG0380017942.01.T01:CDS 35.0%
TGTGTGTCCTTTCTACAAAA+TGG + Chr3:102485903-102485922 None:intergenic 35.0%
TTAAAAGCCGTGTTAAGGTA+TGG - Chr3:102487499-102487518 MsG0380017942.01.T01:five_prime_UTR 35.0%
TTACATTCCGATTTCCATGT+AGG + Chr3:102486484-102486503 None:intergenic 35.0%
TTAGTGTCTCATAGTTCCAA+AGG - Chr3:102487757-102487776 MsG0380017942.01.T01:intron 35.0%
TTCTCTCATGCAAATACATC+AGG - Chr3:102488079-102488098 MsG0380017942.01.T01:intron 35.0%
TTGCACTAAATAGCGTATTG+TGG - Chr3:102486587-102486606 MsG0380017942.01.T01:intron 35.0%
! ACTCTCAGGTTGTTACAAAA+AGG + Chr3:102487673-102487692 None:intergenic 35.0%
! AGAATAATGCAGTTGGGTTT+TGG + Chr3:102484802-102484821 None:intergenic 35.0%
! ATGATTTTTGCAGGATGGAA+AGG - Chr3:102485513-102485532 MsG0380017942.01.T01:CDS 35.0%
! ATGGAATGATTTTTGCAGGA+TGG - Chr3:102485508-102485527 MsG0380017942.01.T01:CDS 35.0%
! ATTTGGGGGAAAATTTTCTG+TGG - Chr3:102485210-102485229 MsG0380017942.01.T01:three_prime_UTR 35.0%
! CCCATGTTGATGAATAAGAT+GGG - Chr3:102488813-102488832 MsG0380017942.01.T01:five_prime_UTR 35.0%
! GGGGATTGTTGATTAAATTG+GGG + Chr3:102484700-102484719 None:intergenic 35.0%
! TCCCATGTTGATGAATAAGA+TGG - Chr3:102488812-102488831 MsG0380017942.01.T01:five_prime_UTR 35.0%
! TGATCCACAAGATTTTCTCA+AGG - Chr3:102488477-102488496 MsG0380017942.01.T01:intron 35.0%
! TTGATAGCCTACATGGAAAT+CGG - Chr3:102486474-102486493 MsG0380017942.01.T01:five_prime_UTR 35.0%
! TTTGGGGGAAAATTTTCTGT+GGG - Chr3:102485211-102485230 MsG0380017942.01.T01:three_prime_UTR 35.0%
! TTTTTGTAACAACCTGAGAG+TGG - Chr3:102487672-102487691 MsG0380017942.01.T01:intron 35.0%
!! CGATGGATTATGGAACTATA+AGG - Chr3:102486081-102486100 MsG0380017942.01.T01:intron 35.0%
!! GTTAAAAACCCGATGGATTA+TGG - Chr3:102486071-102486090 MsG0380017942.01.T01:CDS 35.0%
!! TTTTGAAGATCCAACAGAGA+TGG + Chr3:102484647-102484666 None:intergenic 35.0%
!!! CAGACGCATATGTCTTTTTT+AGG - Chr3:102485472-102485491 MsG0380017942.01.T01:CDS 35.0%
!!! CTGTTTTAAAAGCCGTGTTA+AGG - Chr3:102487494-102487513 MsG0380017942.01.T01:five_prime_UTR 35.0%
!!! GATGATGGAATGATTTTTGC+AGG - Chr3:102485504-102485523 MsG0380017942.01.T01:CDS 35.0%
AAAGCGACTGACAGTAAACA+TGG - Chr3:102485541-102485560 MsG0380017942.01.T01:CDS 40.0%
AAATTCGCACAGTCCAATGT+GGG - Chr3:102488589-102488608 MsG0380017942.01.T01:intron 40.0%
AATACATCAGGCTTGCAAAG+TGG - Chr3:102488091-102488110 MsG0380017942.01.T01:intron 40.0%
AATGCAAGAGATAGCAAGGA+AGG - Chr3:102487042-102487061 MsG0380017942.01.T01:intron 40.0%
AATTGTGTACGCTTGGATGA+TGG + Chr3:102486413-102486432 None:intergenic 40.0%
ACAGTGGAGGTTATACAAGT+TGG - Chr3:102487348-102487367 MsG0380017942.01.T01:intron 40.0%
ACATGAATTTGGTCCTGGTT+GGG - Chr3:102487943-102487962 MsG0380017942.01.T01:intron 40.0%
ACGACAAAGAGGAAGAAGAA+GGG - Chr3:102484617-102484636 MsG0380017942.01.T01:three_prime_UTR 40.0%
ACTATTTACCATCGTCAGGT+TGG - Chr3:102486927-102486946 MsG0380017942.01.T01:intron 40.0%
AGAAAGGAGGAGGAAACAAT+GGG - Chr3:102484560-102484579 MsG0380017942.01.T01:three_prime_UTR 40.0%
AGATCGATTGGTATAAGCTC+AGG - Chr3:102488972-102488991 MsG0380017942.01.T01:five_prime_UTR 40.0%
AGTGATTAGGGTGAAATTGG+GGG + Chr3:102484836-102484855 None:intergenic 40.0%
ATTTCCCTCTCTCAATTACG+CGG - Chr3:102484986-102485005 MsG0380017942.01.T01:three_prime_UTR 40.0%
CAAGCGCTCAAAAAAGTCAT+TGG - Chr3:102487169-102487188 MsG0380017942.01.T01:intron 40.0%
CAAGCTTGAGTCTATTCACT+CGG - Chr3:102485286-102485305 MsG0380017942.01.T01:exon 40.0%
CAAGGCTTACTGAAAACGTT+TGG - Chr3:102488495-102488514 MsG0380017942.01.T01:intron 40.0%
CATTTGAAGACCCGTTAAGT+CGG + Chr3:102488304-102488323 None:intergenic 40.0%
CGAAGTGATTAGGGTGAAAT+TGG + Chr3:102484839-102484858 None:intergenic 40.0%
CGTGAAAATGTCATGTCATG+AGG - Chr3:102488701-102488720 MsG0380017942.01.T01:intron 40.0%
CTATTTACCATCGTCAGGTT+GGG - Chr3:102486928-102486947 MsG0380017942.01.T01:intron 40.0%
CTTCTATAATCCTCTGGTAC+AGG + Chr3:102488034-102488053 None:intergenic 40.0%
GAATGGGAGAATGAATTTCC+AGG - Chr3:102487377-102487396 MsG0380017942.01.T01:intron 40.0%
GAGAAGTAATTGTGTACGCT+TGG + Chr3:102486420-102486439 None:intergenic 40.0%
GAGAGATAGCAATGGAGAAA+CGG + Chr3:102484884-102484903 None:intergenic 40.0%
GATCTAGTGTACAGCCAATA+AGG + Chr3:102485265-102485284 None:intergenic 40.0%
GATCTGATCCGAAGTGATTA+GGG + Chr3:102484848-102484867 None:intergenic 40.0%
GCCCATCTTATTCATCAACA+TGG + Chr3:102488817-102488836 None:intergenic 40.0%
GCTATAGCACTATTGCATAG+CGG + Chr3:102486636-102486655 None:intergenic 40.0%
GGAACGAATCCATGATTCAT+GGG - Chr3:102488182-102488201 MsG0380017942.01.T01:intron 40.0%
GGTATCCATCCAAACATTTG+AGG + Chr3:102488338-102488357 None:intergenic 40.0%
GTATGGAAAGAAGCAGTACA+CGG - Chr3:102487516-102487535 MsG0380017942.01.T01:intron 40.0%
GTCGTTGTTGATGTTGGAAT+GGG + Chr3:102484720-102484739 None:intergenic 40.0%
GTTGCATCAGAGAAAGATTC+AGG + Chr3:102487220-102487239 None:intergenic 40.0%
TATCAGCCTTGAACAGTTTG+AGG - Chr3:102486127-102486146 MsG0380017942.01.T01:intron 40.0%
TATTCCGCGTAATTGAGAGA+GGG + Chr3:102484993-102485012 None:intergenic 40.0%
TCAAATGCAGTCAATACTGG+TGG + Chr3:102487595-102487614 None:intergenic 40.0%
TCCTCAAATGCAGTCAATAC+TGG + Chr3:102487598-102487617 None:intergenic 40.0%
TCGTTGTTGATGTTGGAATG+GGG + Chr3:102484719-102484738 None:intergenic 40.0%
TCTTTCTCTGATGCAACTCT+TGG - Chr3:102487223-102487242 MsG0380017942.01.T01:intron 40.0%
TGAAATTGGGGGTTTGAGAA+TGG + Chr3:102484825-102484844 None:intergenic 40.0%
TGACACTTACAGAAATCCAG+TGG - Chr3:102487555-102487574 MsG0380017942.01.T01:intron 40.0%
TGATCTGATCCGAAGTGATT+AGG + Chr3:102484849-102484868 None:intergenic 40.0%
TGGGTTCTTCTTACATATGG+GGG - Chr3:102485650-102485669 MsG0380017942.01.T01:CDS 40.0%
TTCATCGTCGTTGTTGATGT+TGG + Chr3:102484726-102484745 None:intergenic 40.0%
TTGCTATCTCTTGCATTGCT+CGG + Chr3:102487039-102487058 None:intergenic 40.0%
TTGTAGAAAGGACACACATG+AGG - Chr3:102485905-102485924 MsG0380017942.01.T01:intron 40.0%
TTTGCAGAATGACGTGTTCT+TGG - Chr3:102486869-102486888 MsG0380017942.01.T01:intron 40.0%
! AACAGCAAGAGCTTTTTGTC+TGG + Chr3:102485765-102485784 None:intergenic 40.0%
! AAGAGCTTTTTGTCTGGCAA+AGG + Chr3:102485759-102485778 None:intergenic 40.0%
! AGGCTAACCATTGTCATTTG+AGG + Chr3:102488279-102488298 None:intergenic 40.0%
! ATACAAGTTGGACGTCTGAA+TGG - Chr3:102487360-102487379 MsG0380017942.01.T01:intron 40.0%
! ATGATTTCGGCTCTAATCGT+CGG - Chr3:102488236-102488255 MsG0380017942.01.T01:intron 40.0%
! CAATTTACTAGCCTGGAATC+TGG - Chr3:102488451-102488470 MsG0380017942.01.T01:intron 40.0%
! GACTCATTTGATAGCCTACA+TGG - Chr3:102486467-102486486 MsG0380017942.01.T01:five_prime_UTR 40.0%
! TACAAGTTGGACGTCTGAAT+GGG - Chr3:102487361-102487380 MsG0380017942.01.T01:intron 40.0%
! TGCCTGGATTCATTTCGTTT+TGG + Chr3:102488147-102488166 None:intergenic 40.0%
!! ACCAGTATTGACTGCATTTG+AGG - Chr3:102487594-102487613 MsG0380017942.01.T01:intron 40.0%
!! AGAAGTGTTTGTTTGGGGTA+GGG - Chr3:102484533-102484552 MsG0380017942.01.T01:three_prime_UTR 40.0%
!! GAGAGAGAAGTGTTTGTTTG+GGG - Chr3:102484528-102484547 MsG0380017942.01.T02:three_prime_UTR 40.0%
!! GGAGAGAGAAGTGTTTGTTT+GGG - Chr3:102484527-102484546 MsG0380017942.01.T02:three_prime_UTR 40.0%
!! TAACTCAAGGCACTGATTAG+TGG - Chr3:102486757-102486776 MsG0380017942.01.T01:intron 40.0%
!! TACGCTTGGATGATGGAATA+TGG + Chr3:102486406-102486425 None:intergenic 40.0%
!!! CACACTTTTGAAGTCTGTCA+AGG + Chr3:102485791-102485810 None:intergenic 40.0%
AAATCATCAGAGTGCGCCAT+GGG + Chr3:102488223-102488242 None:intergenic 45.0%
ACAACCCAAATTGTGCAGAG+GGG - Chr3:102487134-102487153 MsG0380017942.01.T01:intron 45.0%
ACCAAGGTCTGCAGCAAAAT+GGG + Chr3:102487870-102487889 None:intergenic 45.0%
ACGAATCCATGATTCATGGG+AGG - Chr3:102488185-102488204 MsG0380017942.01.T01:intron 45.0%
ATCAGAAGCTCTCAGAAGCT+GGG - Chr3:102488868-102488887 MsG0380017942.01.T01:five_prime_UTR 45.0%
ATGGCGCACTCTGATGATTT+CGG - Chr3:102488223-102488242 MsG0380017942.01.T01:intron 45.0%
CAAACGCTAAAACGAGGAAG+TGG + Chr3:102486366-102486385 None:intergenic 45.0%
CAAATTCGCACAGTCCAATG+TGG - Chr3:102488588-102488607 MsG0380017942.01.T01:intron 45.0%
CACAACCCAAATTGTGCAGA+GGG - Chr3:102487133-102487152 MsG0380017942.01.T01:intron 45.0%
CACCAACCTCAAACTGTTCA+AGG + Chr3:102486136-102486155 None:intergenic 45.0%
CATAGACATAGACTCTGACC+TGG + Chr3:102487398-102487417 None:intergenic 45.0%
CATAGCTGCAGTGCAAGATT+TGG + Chr3:102488635-102488654 None:intergenic 45.0%
CGTCGTTGTTGATGTTGGAA+TGG + Chr3:102484721-102484740 None:intergenic 45.0%
CTGAATCCTCCCATGAATCA+TGG + Chr3:102488194-102488213 None:intergenic 45.0%
GAATTGAGCTTGAGAGCTGT+CGG + Chr3:102488402-102488421 None:intergenic 45.0%
GACATGAATTTGGTCCTGGT+TGG - Chr3:102487942-102487961 MsG0380017942.01.T01:intron 45.0%
GACGACAAAGAGGAAGAAGA+AGG - Chr3:102484616-102484635 MsG0380017942.01.T01:three_prime_UTR 45.0%
GAGAAAGGAGGAGGAAACAA+TGG - Chr3:102484559-102484578 MsG0380017942.01.T01:three_prime_UTR 45.0%
GAGAGAGAGAGAGATAGCAA+TGG + Chr3:102484892-102484911 None:intergenic 45.0%
GAGCAATGCAAGAGATAGCA+AGG - Chr3:102487038-102487057 MsG0380017942.01.T01:intron 45.0%
GCATGAGAGAACGTACTTGA+CGG + Chr3:102488070-102488089 None:intergenic 45.0%
GGGAACGAATCCATGATTCA+TGG - Chr3:102488181-102488200 MsG0380017942.01.T01:intron 45.0%
GTATTCCGCGTAATTGAGAG+AGG + Chr3:102484994-102485013 None:intergenic 45.0%
GTGGATCAAATCCAGATTCC+AGG + Chr3:102488465-102488484 None:intergenic 45.0%
TACAGAAATCCAGTGGCTGT+AGG - Chr3:102487562-102487581 MsG0380017942.01.T01:intron 45.0%
TATCAGAAGCTCTCAGAAGC+TGG - Chr3:102488867-102488886 MsG0380017942.01.T01:five_prime_UTR 45.0%
TCATCATCAGATACCCAACC+AGG + Chr3:102487959-102487978 None:intergenic 45.0%
TGCTATCTCTTGCATTGCTC+GGG + Chr3:102487038-102487057 None:intergenic 45.0%
TGGGAATGTCATGTCATGAG+AGG + Chr3:102488797-102488816 None:intergenic 45.0%
TTCAGGAGCAGCAACTCTAT+TGG + Chr3:102487203-102487222 None:intergenic 45.0%
TTGCCACCAGGACATGAATT+TGG - Chr3:102487932-102487951 MsG0380017942.01.T01:intron 45.0%
TTGTTTGGAAGGTTGCTGCT+AGG - Chr3:102487894-102487913 MsG0380017942.01.T01:intron 45.0%
! AGCCTTGAACAGTTTGAGGT+TGG - Chr3:102486131-102486150 MsG0380017942.01.T01:intron 45.0%
! ATGGGGGTGTACAAGTAAGT+GGG - Chr3:102485666-102485685 MsG0380017942.01.T01:CDS 45.0%
! CTGATGATGATGTGTCACAG+AGG - Chr3:102487969-102487988 MsG0380017942.01.T01:intron 45.0%
! CTTAACGGGTCTTCAAATGC+TGG - Chr3:102488305-102488324 MsG0380017942.01.T01:intron 45.0%
! TATGGGGGTGTACAAGTAAG+TGG - Chr3:102485665-102485684 MsG0380017942.01.T01:CDS 45.0%
! TTGTCTGGCAAAGGTGTAGT+GGG + Chr3:102485750-102485769 None:intergenic 45.0%
! TTTGTCTGGCAAAGGTGTAG+TGG + Chr3:102485751-102485770 None:intergenic 45.0%
!! AGTACACGGTTGATGAGACA+AGG - Chr3:102487530-102487549 MsG0380017942.01.T01:intron 45.0%
!! GAGAAGTGTTTGTTTGGGGT+AGG - Chr3:102484532-102484551 MsG0380017942.01.T01:three_prime_UTR 45.0%
!! GGGAGAGAGAAGTGTTTGTT+TGG - Chr3:102484526-102484545 MsG0380017942.01.T02:three_prime_UTR 45.0%
!! AAAAAAAATTAAAAAAGTAA+TGG + Chr3:102485035-102485054 None:intergenic 5.0%
!! TATTTAAATTAAATAATTTG+GGG - Chr3:102485195-102485214 MsG0380017942.01.T01:three_prime_UTR 5.0%
!!! AATTTTTTTTAATAAATTTC+TGG - Chr3:102485045-102485064 MsG0380017942.01.T01:three_prime_UTR 5.0%
AATCCAGGCAGCAGTGTTAG+TGG - Chr3:102488157-102488176 MsG0380017942.01.T01:intron 50.0%
ACAGGTTCGCAGGTTATGTC+TGG - Chr3:102485723-102485742 MsG0380017942.01.T01:CDS 50.0%
ACGTACTGCAAGAAGCTGCT+TGG + Chr3:102487626-102487645 None:intergenic 50.0%
ACTGTTTGATTGGAGACCCC+TGG + Chr3:102487333-102487352 None:intergenic 50.0%
AGGGGTCTCCAATCAAACAG+TGG - Chr3:102487332-102487351 MsG0380017942.01.T01:intron 50.0%
ATGCAACTCTTGGCTTCTGG+CGG - Chr3:102487233-102487252 MsG0380017942.01.T01:intron 50.0%
CAGACCTTGGTCCTGTTGTT+TGG - Chr3:102487879-102487898 MsG0380017942.01.T01:intron 50.0%
CCACAACCCAAATTGTGCAG+AGG - Chr3:102487132-102487151 MsG0380017942.01.T01:intron 50.0%
CCAGGACATGAATTTGGTCC+TGG - Chr3:102487938-102487957 MsG0380017942.01.T01:intron 50.0%
CCAGGACCAAATTCATGTCC+TGG + Chr3:102487941-102487960 None:intergenic 50.0%
CCTTCCAAACAACAGGACCA+AGG + Chr3:102487886-102487905 None:intergenic 50.0%
CCTTCCCCTCTGCACAATTT+GGG + Chr3:102487141-102487160 None:intergenic 50.0%
CTGATGCAACTCTTGGCTTC+TGG - Chr3:102487230-102487249 MsG0380017942.01.T01:intron 50.0%
GAAATCATCAGAGTGCGCCA+TGG + Chr3:102488224-102488243 None:intergenic 50.0%
GACAATTGTCTGCCACTCTC+AGG + Chr3:102487687-102487706 None:intergenic 50.0%
GACCAAGGTCTGCAGCAAAA+TGG + Chr3:102487871-102487890 None:intergenic 50.0%
GAGAACGTACTTGACGGAGA+AGG + Chr3:102488064-102488083 None:intergenic 50.0%
GATTCATGGGAGGATTCAGC+AGG - Chr3:102488195-102488214 MsG0380017942.01.T01:intron 50.0%
GCAGCAACCTTCCAAACAAC+AGG + Chr3:102487893-102487912 None:intergenic 50.0%
GGACCAAATTCATGTCCTGG+TGG + Chr3:102487938-102487957 None:intergenic 50.0%
GGATACCACAAACAGCCTGT+CGG - Chr3:102488351-102488370 MsG0380017942.01.T01:intron 50.0%
GGTCTCCAATCAAACAGTGG+AGG - Chr3:102487335-102487354 MsG0380017942.01.T01:intron 50.0%
GGTTCATTTCCTACAGCCAC+TGG + Chr3:102487574-102487593 None:intergenic 50.0%
GTAGGTGCAATATGACCGAC+AGG + Chr3:102488369-102488388 None:intergenic 50.0%
TATGACCGACAGGCTGTTTG+TGG + Chr3:102488359-102488378 None:intergenic 50.0%
TGTCGAGCAAAGACAGAGTC+AGG + Chr3:102486179-102486198 None:intergenic 50.0%
TTCACCTCTTCTGGATCCAC+AGG + Chr3:102485942-102485961 None:intergenic 50.0%
TTCAGACACTCCTGTACCAG+AGG - Chr3:102488021-102488040 MsG0380017942.01.T01:five_prime_UTR 50.0%
! CCTTGGTCCTGTTGTTTGGA+AGG - Chr3:102487883-102487902 MsG0380017942.01.T01:intron 50.0%
! TAGTGATGATGACGACGACG+AGG - Chr3:102487086-102487105 MsG0380017942.01.T01:intron 50.0%
! TGAGGTATTCTCTGAGCCTG+TGG - Chr3:102485923-102485942 MsG0380017942.01.T01:intron 50.0%
! TGGGGGTGTACAAGTAAGTG+GGG - Chr3:102485667-102485686 MsG0380017942.01.T01:CDS 50.0%
! TTCGGCTCTAATCGTCGGTT+AGG - Chr3:102488241-102488260 MsG0380017942.01.T01:intron 50.0%
! TTGTGTGTTGACAGGTTCGC+AGG - Chr3:102485713-102485732 MsG0380017942.01.T01:CDS 50.0%
!! CCTCTGCACAATTTGGGTTG+TGG + Chr3:102487135-102487154 None:intergenic 50.0%
!! CTGCACAATTTGGGTTGTGG+TGG + Chr3:102487132-102487151 None:intergenic 50.0%
!! GAGTCTATTCACTCGGTGCA+AGG - Chr3:102485293-102485312 MsG0380017942.01.T01:exon 50.0%
!! GGTTAGCCTTGCCGACTTAA+CGG - Chr3:102488290-102488309 MsG0380017942.01.T01:intron 50.0%
!! GTCACAGAGGCATCACTTTG+CGG - Chr3:102487982-102488001 MsG0380017942.01.T01:intron 50.0%
!! GTTAGCCTTGCCGACTTAAC+GGG - Chr3:102488291-102488310 MsG0380017942.01.T01:intron 50.0%
!!! GACTTTTTTGAGCGCTTGCC+TGG + Chr3:102487167-102487186 None:intergenic 50.0%
!!! TTTTTTGAGCGCTTGCCTGG+TGG + Chr3:102487164-102487183 None:intergenic 50.0%
AGCCGACAGATTCATCAGCC+AGG - Chr3:102487312-102487331 MsG0380017942.01.T01:intron 55.0%
ATCAGCAGTGCTTTGCCACC+AGG - Chr3:102487920-102487939 MsG0380017942.01.T01:intron 55.0%
CACAGTCCAATGTGGGAGAC+TGG - Chr3:102488596-102488615 MsG0380017942.01.T01:intron 55.0%
CAGGCAGCAGTGTTAGTGGT+GGG - Chr3:102488161-102488180 MsG0380017942.01.T01:intron 55.0%
CCCAAATTGTGCAGAGGGGA+AGG - Chr3:102487138-102487157 MsG0380017942.01.T01:intron 55.0%
CCCCTGGCTGATGAATCTGT+CGG + Chr3:102487317-102487336 None:intergenic 55.0%
CCGACAGATTCATCAGCCAG+GGG - Chr3:102487314-102487333 MsG0380017942.01.T01:intron 55.0%
GAAGACCCGTTAAGTCGGCA+AGG + Chr3:102488299-102488318 None:intergenic 55.0%
GAAGGGTCGTCCATCTCTGT+TGG - Chr3:102484634-102484653 MsG0380017942.01.T01:three_prime_UTR 55.0%
GACTTCACCCAACCTGACGA+TGG + Chr3:102486938-102486957 None:intergenic 55.0%
GAGGATTCAGCAGGAACCCA+TGG - Chr3:102488204-102488223 MsG0380017942.01.T01:intron 55.0%
GATACGGCTAGTGGCTCCAA+TGG - Chr3:102487257-102487276 MsG0380017942.01.T01:intron 55.0%
GCAAGATTTGGCTGCAGCTG+AGG + Chr3:102488623-102488642 None:intergenic 55.0%
GCCGACAGATTCATCAGCCA+GGG - Chr3:102487313-102487332 MsG0380017942.01.T01:intron 55.0%
GCCTTCCCCTCTGCACAATT+TGG + Chr3:102487142-102487161 None:intergenic 55.0%
TGAGCCTGTGGATCCAGAAG+AGG - Chr3:102485935-102485954 MsG0380017942.01.T01:intron 55.0%
TGAGGACCAGTCTCCCACAT+TGG + Chr3:102488605-102488624 None:intergenic 55.0%
TGCAACTCTTGGCTTCTGGC+GGG - Chr3:102487234-102487253 MsG0380017942.01.T01:intron 55.0%
! GCCCATTTTGCTGCAGACCT+TGG - Chr3:102487866-102487885 MsG0380017942.01.T01:intron 55.0%
! GGGGGTGTACAAGTAAGTGG+GGG - Chr3:102485668-102485687 MsG0380017942.01.T01:CDS 55.0%
! GGTCTGCAGCAAAATGGGCT+AGG + Chr3:102487865-102487884 None:intergenic 55.0%
! TTTGGGGTAGGGAGCGAGAA+AGG - Chr3:102484544-102484563 MsG0380017942.01.T01:three_prime_UTR 55.0%
CCACCACTAACACTGCTGCC+TGG + Chr3:102488163-102488182 None:intergenic 60.0%
CCAGGCAGCAGTGTTAGTGG+TGG - Chr3:102488160-102488179 MsG0380017942.01.T01:intron 60.0%
CGACGACGACGACGACAAAG+AGG - Chr3:102484606-102484625 MsG0380017942.01.T01:three_prime_UTR 60.0%
CTTGGCTTCTGGCGGGGATA+CGG - Chr3:102487241-102487260 MsG0380017942.01.T01:intron 60.0%
GCAACTCTTGGCTTCTGGCG+GGG - Chr3:102487235-102487254 MsG0380017942.01.T01:intron 60.0%
GGAGGAGGAAACAATGGGCG+AGG - Chr3:102484565-102484584 MsG0380017942.01.T01:three_prime_UTR 60.0%
GTAGGGAGCGAGAAAGGAGG+AGG - Chr3:102484550-102484569 MsG0380017942.01.T01:three_prime_UTR 60.0%
GGGGTAGGGAGCGAGAAAGG+AGG - Chr3:102484547-102484566 MsG0380017942.01.T01:three_prime_UTR 65.0%
TCTGGCGGGGATACGGCTAG+TGG - Chr3:102487248-102487267 MsG0380017942.01.T01:intron 65.0%
GTGCAGAGGGGAAGGCCACC+AGG - Chr3:102487146-102487165 MsG0380017942.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 102484522 102489061 102484522 ID=MsG0380017942.01;Name=MsG0380017942.01
Chr3 mRNA 102484529 102489061 102484529 ID=MsG0380017942.01.T01;Parent=MsG0380017942.01;Name=MsG0380017942.01.T01;_AED=0.48;_eAED=0.48;_QI=841|1|1|1|0.22|0.1|10|666|270
Chr3 exon 102484529 102484778 102484529 ID=MsG0380017942.01.T01:exon:18275;Parent=MsG0380017942.01.T01
Chr3 exon 102484882 102485756 102484882 ID=MsG0380017942.01.T01:exon:18274;Parent=MsG0380017942.01.T01
Chr3 five_prime_UTR 102488711 102489061 102488711 ID=MsG0380017942.01.T01:five_prime_utr;Parent=MsG0380017942.01.T01
Chr3 five_prime_UTR 102488021 102488057 102488021 ID=MsG0380017942.01.T01:five_prime_utr;Parent=MsG0380017942.01.T01
Chr3 five_prime_UTR 102487778 102487856 102487778 ID=MsG0380017942.01.T01:five_prime_utr;Parent=MsG0380017942.01.T01
Chr3 five_prime_UTR 102487627 102487672 102487627 ID=MsG0380017942.01.T01:five_prime_utr;Parent=MsG0380017942.01.T01
Chr3 five_prime_UTR 102487435 102487533 102487435 ID=MsG0380017942.01.T01:five_prime_utr;Parent=MsG0380017942.01.T01
Chr3 five_prime_UTR 102486639 102486707 102486639 ID=MsG0380017942.01.T01:five_prime_utr;Parent=MsG0380017942.01.T01
Chr3 five_prime_UTR 102486390 102486549 102486390 ID=MsG0380017942.01.T01:five_prime_utr;Parent=MsG0380017942.01.T01
Chr3 CDS 102486185 102486389 102486185 ID=MsG0380017942.01.T01:cds;Parent=MsG0380017942.01.T01
Chr3 CDS 102485944 102486092 102485944 ID=MsG0380017942.01.T01:cds;Parent=MsG0380017942.01.T01
Chr3 CDS 102485298 102485756 102485298 ID=MsG0380017942.01.T01:cds;Parent=MsG0380017942.01.T01
Chr3 three_prime_UTR 102484882 102485297 102484882 ID=MsG0380017942.01.T01:three_prime_utr;Parent=MsG0380017942.01.T01
Chr3 three_prime_UTR 102484529 102484778 102484529 ID=MsG0380017942.01.T01:three_prime_utr;Parent=MsG0380017942.01.T01
Chr3 mRNA 102484522 102489061 102484522 ID=MsG0380017942.01.T02;Parent=MsG0380017942.01;Name=MsG0380017942.01.T02;_AED=0.48;_eAED=0.48;_QI=841|1|1|1|0.25|0.22|9|776|270
Chr3 exon 102484522 102485756 102484522 ID=MsG0380017942.01.T02:exon:18276;Parent=MsG0380017942.01.T02
Chr3 five_prime_UTR 102488711 102489061 102488711 ID=MsG0380017942.01.T02:five_prime_utr;Parent=MsG0380017942.01.T02
Chr3 five_prime_UTR 102488021 102488057 102488021 ID=MsG0380017942.01.T02:five_prime_utr;Parent=MsG0380017942.01.T02
Chr3 five_prime_UTR 102487778 102487856 102487778 ID=MsG0380017942.01.T02:five_prime_utr;Parent=MsG0380017942.01.T02
Chr3 five_prime_UTR 102487627 102487672 102487627 ID=MsG0380017942.01.T02:five_prime_utr;Parent=MsG0380017942.01.T02
Chr3 five_prime_UTR 102487435 102487533 102487435 ID=MsG0380017942.01.T02:five_prime_utr;Parent=MsG0380017942.01.T02
Chr3 five_prime_UTR 102486639 102486707 102486639 ID=MsG0380017942.01.T02:five_prime_utr;Parent=MsG0380017942.01.T02
Chr3 five_prime_UTR 102486390 102486549 102486390 ID=MsG0380017942.01.T02:five_prime_utr;Parent=MsG0380017942.01.T02
Chr3 CDS 102486185 102486389 102486185 ID=MsG0380017942.01.T02:cds;Parent=MsG0380017942.01.T02
Chr3 CDS 102485944 102486092 102485944 ID=MsG0380017942.01.T02:cds;Parent=MsG0380017942.01.T02
Chr3 CDS 102485298 102485756 102485298 ID=MsG0380017942.01.T02:cds;Parent=MsG0380017942.01.T02
Chr3 three_prime_UTR 102484522 102485297 102484522 ID=MsG0380017942.01.T02:three_prime_utr;Parent=MsG0380017942.01.T02
Gene Sequence

>MsG0380017942.01.T01

ATGTCTCCAATAGAGTTGCTGCTCCTGAATCTTTCTCTGATGCAACTCTTGGCTTCTGGCGGGGATACGGCTAGTGGCTCCAATGGTTATAATCTAAGAAAAGCAGTAAGCAAATTTCAGCCGACAGATTCATCAGCCAGGGGTCTCCAATCAAACAGTGGAGGTTATACAAGTTGGACGTCTGAATGGGAGAATGAATTTCCAGCTTCTGTTTTAAAAGCCGTGTTAAGGTATGGAAAGAAGCAGTACACGGTTGATGAGACAAGGCGTGACACTTACAGAAATCCAGTGGCTGTAGGAAATGAACCACCAGTATTGACTGCATTTGAGGATAATTCCAAGCAGCTTCTTGCAGTTGGTTTACATGTGAAGCACAGCTATGCAAGAAGCCTAGCCCATTTTGCTGCAGACCTTGGTCCTGTTGTTTGGAAGGTTGCTGCTAGGAAAATCAGCAGTGCTTTGCCACCAGGACATGAATTTGGTCCTGGTTGGGTATCTGATGATGATGTGTCACAGAGGCATCACTTTGCGGTTCGTGATGAGAGAAATTCAGACACTCCTGTACCAGAGGATTATAGAAGCAGATTTCCTTCTCCGTCAAGTACGTTCTCTCATGCAAATACATCAGGCTTGCAAAGTGGAGACGTGTTGATAAACAGAGAATCGAGTTACCAAAACGAAATGAATCCAGGCAGCAGTGTTAGTGGTGGGAACGAATCCATGATTCATGGGAGGATTCAGCAGGAACCCATGGCGCACTCTGATGATTTCGGCTCTAATCGTCGGTTAGGATCTAATTTTCACCTCAAATGA

>MsG0380017942.01.T02

ATGTCTCCAATAGAGTTGCTGCTCCTGAATCTTTCTCTGATGCAACTCTTGGCTTCTGGCGGGGATACGGCTAGTGGCTCCAATGGTTATAATCTAAGAAAAGCAGTAAGCAAATTTCAGCCGACAGATTCATCAGCCAGGGGTCTCCAATCAAACAGTGGAGGTTATACAAGTTGGACGTCTGAATGGGAGAATGAATTTCCAGCTTCTGTTTTAAAAGCCGTGTTAAGGTATGGAAAGAAGCAGTACACGGTTGATGAGACAAGGCGTGACACTTACAGAAATCCAGTGGCTGTAGGAAATGAACCACCAGTATTGACTGCATTTGAGGATAATTCCAAGCAGCTTCTTGCAGTTGGTTTACATGTGAAGCACAGCTATGCAAGAAGCCTAGCCCATTTTGCTGCAGACCTTGGTCCTGTTGTTTGGAAGGTTGCTGCTAGGAAAATCAGCAGTGCTTTGCCACCAGGACATGAATTTGGTCCTGGTTGGGTATCTGATGATGATGTGTCACAGAGGCATCACTTTGCGGTTCGTGATGAGAGAAATTCAGACACTCCTGTACCAGAGGATTATAGAAGCAGATTTCCTTCTCCGTCAAGTACGTTCTCTCATGCAAATACATCAGGCTTGCAAAGTGGAGACGTGTTGATAAACAGAGAATCGAGTTACCAAAACGAAATGAATCCAGGCAGCAGTGTTAGTGGTGGGAACGAATCCATGATTCATGGGAGGATTCAGCAGGAACCCATGGCGCACTCTGATGATTTCGGCTCTAATCGTCGGTTAGGATCTAATTTTCACCTCAAATGA
Protein sequence

>MsG0380017942.01.T01

MSPIELLLLNLSLMQLLASGGDTASGSNGYNLRKAVSKFQPTDSSARGLQSNSGGYTSWTSEWENEFPASVLKAVLRYGKKQYTVDETRRDTYRNPVAVGNEPPVLTAFEDNSKQLLAVGLHVKHSYARSLAHFAADLGPVVWKVAARKISSALPPGHEFGPGWVSDDDVSQRHHFAVRDERNSDTPVPEDYRSRFPSPSSTFSHANTSGLQSGDVLINRESSYQNEMNPGSSVSGGNESMIHGRIQQEPMAHSDDFGSNRRLGSNFHLK*

>MsG0380017942.01.T02

MSPIELLLLNLSLMQLLASGGDTASGSNGYNLRKAVSKFQPTDSSARGLQSNSGGYTSWTSEWENEFPASVLKAVLRYGKKQYTVDETRRDTYRNPVAVGNEPPVLTAFEDNSKQLLAVGLHVKHSYARSLAHFAADLGPVVWKVAARKISSALPPGHEFGPGWVSDDDVSQRHHFAVRDERNSDTPVPEDYRSRFPSPSSTFSHANTSGLQSGDVLINRESSYQNEMNPGSSVSGGNESMIHGRIQQEPMAHSDDFGSNRRLGSNFHLK*