AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380018054.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380018054.01.T01 MTR_3g117990 88.079 151 13 2 1 151 228 373 1.89e-84 257
MsG0380018054.01.T01 MTR_3g117990 83.019 106 13 2 1 106 228 328 5.87e-51 169
MsG0380018054.01.T01 MTR_3g117990 100.000 73 0 0 1 73 228 300 2.02e-46 155
MsG0380018054.01.T01 MTR_1g087750 48.052 154 69 5 2 151 252 398 5.70e-41 145
MsG0380018054.01.T01 MTR_1g087750 48.052 154 69 5 2 151 301 447 1.10e-40 145
MsG0380018054.01.T01 MTR_7g406840 41.935 155 79 3 1 151 203 350 2.16e-36 132
MsG0380018054.01.T01 MTR_7g102840 35.714 238 118 9 2 221 268 488 3.56e-32 122
MsG0380018054.01.T01 MTR_7g102870 38.182 165 92 4 2 161 270 429 1.64e-31 120
MsG0380018054.01.T01 MTR_7g112720 39.394 165 90 4 2 161 109 268 7.75e-31 116
MsG0380018054.01.T01 MTR_1g062970 41.176 153 82 3 2 151 270 417 2.15e-30 117
MsG0380018054.01.T01 MTR_7g112720 39.394 165 90 4 2 161 240 399 3.22e-30 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380018054.01.T01 AT5G47900 45.752 153 76 2 1 151 69 216 8.07e-40 137
MsG0380018054.01.T01 AT5G47900 45.752 153 76 2 1 151 153 300 6.29e-39 137
MsG0380018054.01.T01 AT5G47900 45.752 153 76 2 1 151 194 341 1.68e-38 137
MsG0380018054.01.T01 AT5G47900 45.752 153 76 2 1 151 253 400 4.80e-38 137
MsG0380018054.01.T01 AT5G47900 45.752 153 76 2 1 151 253 400 4.80e-38 137
MsG0380018054.01.T01 AT5G47900 42.754 138 72 2 1 136 253 385 4.83e-29 112
MsG0380018054.01.T01 AT5G47900 37.427 171 71 4 1 136 253 422 8.23e-28 109
MsG0380018054.01.T01 AT5G47900 36.970 165 74 4 1 151 247 395 8.90e-27 106
MsG0380018054.01.T01 AT5G27730 37.195 164 95 4 2 161 164 323 1.75e-26 105
MsG0380018054.01.T01 AT5G27730 37.195 164 95 4 2 161 245 404 4.02e-26 105
MsG0380018054.01.T01 AT5G27730 40.146 137 76 3 2 136 164 296 4.23e-24 97.4
MsG0380018054.01.T01 AT5G27730 40.146 137 76 3 2 136 245 377 1.55e-23 97.4
MsG0380018054.01.T01 AT5G47900 51.316 76 35 1 1 74 253 328 5.38e-22 92.8
MsG0380018054.01.T01 AT5G27730 47.436 78 39 1 2 77 245 322 1.02e-18 83.6

Find 97 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTCCGGTTTCACATTTA+TGG 0.131675 3:+103790664 MsG0380018054.01.T01:CDS
TGCATTATTGGACTTCAATA+TGG 0.179392 3:+103790123 MsG0380018054.01.T01:CDS
GCTGCAGTTTCATGCATTAT+TGG 0.191483 3:+103790111 MsG0380018054.01.T01:CDS
CTTATGATATTTGTCGATTA+TGG 0.223955 3:+103787988 MsG0380018054.01.T01:five_prime_UTR
TCATTCCAACTCTTTATTCT+TGG 0.246225 3:+103788179 MsG0380018054.01.T01:five_prime_UTR
CTGCTTAGCTCTGCAGCTTC+CGG 0.284725 3:+103790650 MsG0380018054.01.T01:CDS
GTTCAAACTATACGCTTCTT+TGG 0.296079 3:+103788259 MsG0380018054.01.T01:five_prime_UTR
GGGTGGTTCCTTGCGTTAAT+AGG 0.300918 3:+103790403 MsG0380018054.01.T01:CDS
TGCCTCCGTTGATGTCTTCC+GGG 0.310883 3:+103787873 MsG0380018054.01.T01:five_prime_UTR
TTGCCTCCGTTGATGTCTTC+CGG 0.316396 3:+103787872 MsG0380018054.01.T01:five_prime_UTR
ATGATTGATCGCTATATTCT+TGG 0.323341 3:+103788900 MsG0380018054.01.T01:CDS
GGTTACCTTAAAATGCCTTC+TGG 0.328597 3:-103789133 None:intergenic
TTTGAAGAAACTCGGATGTT+TGG 0.338485 3:-103788350 None:intergenic
ATTTATGGCTTTATATATTC+TGG 0.342580 3:+103790679 MsG0380018054.01.T01:CDS
GTGTACAGAGATTTATTTAG+AGG 0.350332 3:-103790614 None:intergenic
GCACATTCTTGCCAACTTAG+AGG 0.363831 3:+103790146 MsG0380018054.01.T01:CDS
ATTCTTGGCATCCTTCTTCA+AGG 0.367489 3:+103788194 MsG0380018054.01.T01:five_prime_UTR
TAAACATTGGCGCCTTGAAT+TGG 0.371732 3:-103788577 None:intergenic
TCTTCTTTGCCTCCAATTCA+AGG 0.372683 3:+103788565 MsG0380018054.01.T01:five_prime_UTR
ACTCTGCAGGTAGATGTTTA+CGG 0.374686 3:+103790860 MsG0380018054.01.T01:intron
ACCTTAAGATTTCTGAAAAC+AGG 0.377103 3:-103788945 None:intergenic
CAATTAGTTAATTGTTTGTT+GGG 0.377544 3:-103791046 None:intergenic
AATCATTCCAGCAGAATTGC+AGG 0.385868 3:-103788883 None:intergenic
CGGCATCATTCCTTCACATA+TGG 0.395026 3:+103788229 MsG0380018054.01.T01:five_prime_UTR
CTCTGCAGGTAGATGTTTAC+GGG 0.398068 3:+103790861 MsG0380018054.01.T01:intron
GCATTATTGGACTTCAATAT+GGG 0.409722 3:+103790124 MsG0380018054.01.T01:CDS
ACAATTAGTTAATTGTTTGT+TGG 0.410911 3:-103791047 None:intergenic
TGTTCAGTGAGAGGTGATCT+TGG 0.410959 3:+103788855 MsG0380018054.01.T01:five_prime_UTR
GATGCATCGAAGTGCCAATC+TGG 0.416971 3:-103788532 None:intergenic
GACATCAACGGAGGCAACTC+GGG 0.437406 3:-103787866 None:intergenic
ATTTACTCCGGATTGTTGTA+TGG 0.438927 3:+103788499 MsG0380018054.01.T01:five_prime_UTR
CCATGGAGCATGAGAAATGA+TGG 0.451821 3:-103788025 None:intergenic
TGTTCTTGTATCTTCAAACT+TGG 0.454466 3:+103790938 MsG0380018054.01.T01:CDS
TAAAGCCATAAATGTGAAAC+CGG 0.454471 3:-103790669 None:intergenic
GGACCTGCCTGCAATTCTGC+TGG 0.460227 3:+103788876 MsG0380018054.01.T01:five_prime_UTR
AAAATGCCTTCTGGATCAAA+AGG 0.469212 3:-103789124 None:intergenic
GTTTCTAGCAGCAATATTGT+TGG 0.471022 3:+103788474 MsG0380018054.01.T01:five_prime_UTR
AGCCAACACAATCTACTACT+TGG 0.474321 3:+103788141 MsG0380018054.01.T01:five_prime_UTR
TCAAAACTTATTACTCCCAT+TGG 0.476105 3:+103788368 MsG0380018054.01.T01:five_prime_UTR
TTGGCCGTGATTGCAATTCA+AGG 0.479960 3:+103790957 MsG0380018054.01.T01:CDS
GACAAGTGTGTTGGAGTGGA+TGG 0.481535 3:+103790895 MsG0380018054.01.T01:CDS
GAAAATAACCACCTTGAAGA+AGG 0.482226 3:-103788205 None:intergenic
ACATTGGCGCCTTGAATTGG+AGG 0.491113 3:-103788574 None:intergenic
AGACATCAACGGAGGCAACT+CGG 0.491228 3:-103787867 None:intergenic
AAGAAACTCGGATGTTTGGA+TGG 0.491252 3:-103788346 None:intergenic
ATGAGAAATGATGGGGAAGA+TGG 0.492402 3:-103788016 None:intergenic
GCCTTTCTTTCTCTTCCTTG+TGG 0.496200 3:+103788077 MsG0380018054.01.T01:five_prime_UTR
ATGGTCTATATGTTCCAGAT+TGG 0.496797 3:+103788518 MsG0380018054.01.T01:five_prime_UTR
CCATCATTTCTCATGCTCCA+TGG 0.501869 3:+103788025 MsG0380018054.01.T01:five_prime_UTR
ACCACAAGGAAGAGAAAGAA+AGG 0.507419 3:-103788078 None:intergenic
AGTGATTTAGGCGCCCTTTG+TGG 0.507807 3:-103790349 None:intergenic
ATTTCTCATGCTCCATGGAA+TGG 0.517246 3:+103788030 MsG0380018054.01.T01:five_prime_UTR
ACATGATCTCACCTCTAAGT+TGG 0.518261 3:-103790157 None:intergenic
ACAAAGGGCGCCTAAATCAC+TGG 0.519041 3:+103790351 MsG0380018054.01.T01:CDS
AGTTGGAATGATCTAAGTAA+TGG 0.520686 3:-103788167 None:intergenic
ATCTATCTATCAAAGAAGAA+TGG 0.522130 3:+103787789 MsG0380018054.01.T01:five_prime_UTR
CAATACTGTAGGACCACAAA+GGG 0.522623 3:+103790336 MsG0380018054.01.T01:intron
TTTCTTACTCGCAGATACAC+TGG 0.523759 3:+103791080 MsG0380018054.01.T01:CDS
GGGCGCCTAAATCACTGGCT+TGG 0.529127 3:+103790356 MsG0380018054.01.T01:CDS
ACGGTGAACTATCTGAAACT+TGG 0.530146 3:-103789087 None:intergenic
TTCCAAGTAGTAGATTGTGT+TGG 0.530377 3:-103788143 None:intergenic
ATGATATTTGTCGATTATGG+TGG 0.535720 3:+103787991 MsG0380018054.01.T01:five_prime_UTR
ATATTGTTGGCAATTTACTC+CGG 0.555052 3:+103788487 MsG0380018054.01.T01:five_prime_UTR
CAGACGTTTGACAAGTGTGT+TGG 0.557488 3:+103790886 MsG0380018054.01.T01:CDS
ATGTTTGGATGGGAGTCGGA+AGG 0.557570 3:-103788335 None:intergenic
AAATCCTTGAATTGCAATCA+CGG 0.562969 3:-103790961 None:intergenic
GGATGCCAAGAATAAAGAGT+TGG 0.564020 3:-103788184 None:intergenic
CTTGGCATCCTTCTTCAAGG+TGG 0.564926 3:+103788197 MsG0380018054.01.T01:five_prime_UTR
GAGTGCAATATGTCTAGCAC+TGG 0.569204 3:+103789064 MsG0380018054.01.T01:CDS
CATGGAGCATGAGAAATGAT+GGG 0.571546 3:-103788024 None:intergenic
TTTCAGATAGTTCACCGTCA+TGG 0.572351 3:+103789092 MsG0380018054.01.T01:CDS
GCAAGGTGAAGACCATTCCA+TGG 0.582375 3:-103788042 None:intergenic
TGTTTGGATGGGAGTCGGAA+GGG 0.585815 3:-103788334 None:intergenic
TCGGATGTTTGGATGGGAGT+CGG 0.590363 3:-103788339 None:intergenic
TTAGTTAATTGTTTGTTGGG+AGG 0.593996 3:-103791043 None:intergenic
TATTCTCACGGTGTAAACAT+TGG 0.594566 3:-103788590 None:intergenic
AGAAACTCGGATGTTTGGAT+GGG 0.595944 3:-103788345 None:intergenic
ATATAGACCATACAACAATC+CGG 0.597198 3:-103788506 None:intergenic
ACATACAAAACAGAGAGGCC+CGG 0.609261 3:-103787891 None:intergenic
AACACAAACCTATTAACGCA+AGG 0.613812 3:-103790411 None:intergenic
TTCAGCAGCAGCAACGCTCG+TGG 0.615336 3:-103787817 None:intergenic
CAGGTGAATTGTTCAGTGAG+AGG 0.616782 3:+103788846 MsG0380018054.01.T01:intron
AACGTCAAGACCATATGTGA+AGG 0.617892 3:-103788239 None:intergenic
ATTCCAGCAGAATTGCAGGC+AGG 0.625616 3:-103788879 None:intergenic
ACATCAACGGAGGCAACTCG+GGG 0.631918 3:-103787865 None:intergenic
GTTTGACAAGTGTGTTGGAG+TGG 0.639516 3:+103790891 MsG0380018054.01.T01:CDS
ACAATACTGTAGGACCACAA+AGG 0.644164 3:+103790335 MsG0380018054.01.T01:intron
TTGAATTGGAGGCAAAGAAG+AGG 0.646002 3:-103788563 None:intergenic
TCTAAATAAATCTCTGTACA+CGG 0.654333 3:+103790616 MsG0380018054.01.T01:CDS
AGAGGCCCGGAAGACATCAA+CGG 0.660229 3:-103787878 None:intergenic
ATGGAGCATGAGAAATGATG+GGG 0.677643 3:-103788023 None:intergenic
GGCCCGGAAGACATCAACGG+AGG 0.680966 3:-103787875 None:intergenic
AAAGGAGCGTGACACCATGA+CGG 0.685895 3:-103789106 None:intergenic
AAGGCATGACGAAATCAGCA+AGG 0.697375 3:-103788059 None:intergenic
AGAGTACATACAAAACAGAG+AGG 0.739014 3:-103787896 None:intergenic
AGTGCAAGAGAGATACCACA+AGG 0.743571 3:-103788092 None:intergenic
CATCAACGGAGGCAACTCGG+GGG 0.763652 3:-103787864 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAAAAATTATATATAACA+TGG - Chr3:103790838-103790857 None:intergenic 10.0%
!! AATAGATAATACTAATAAAA+TGG - Chr3:103789881-103789900 None:intergenic 10.0%
!!! TAATTTAGTTTTTAACTTAA+TGG + Chr3:103790223-103790242 MsG0380018054.01.T01:intron 10.0%
!! ATGAAGTAAGTTAATTATTA+TGG - Chr3:103789676-103789695 None:intergenic 15.0%
!! TATATATAACATGGTTAAAT+AGG - Chr3:103790829-103790848 None:intergenic 15.0%
!!! GTTATAAAATTTTGTAATCA+AGG - Chr3:103789038-103789057 None:intergenic 15.0%
!!! TATCTATTGTAATTTGTAAA+AGG + Chr3:103789893-103789912 MsG0380018054.01.T01:intron 15.0%
!!! TTTCTTTTAAACATAATAAC+AGG + Chr3:103788827-103788846 MsG0380018054.01.T01:intron 15.0%
!! AAATAAATAATAGTGTGCAT+TGG - Chr3:103788769-103788788 None:intergenic 20.0%
!! AATCATAAACAAAAATCACA+AGG - Chr3:103788805-103788824 None:intergenic 20.0%
!! ACAATTAGTTAATTGTTTGT+TGG - Chr3:103791050-103791069 None:intergenic 20.0%
!! CAATTAGTTAATTGTTTGTT+GGG - Chr3:103791049-103791068 None:intergenic 20.0%
!! CAATTCACTATTTACTAATA+TGG + Chr3:103789389-103789408 MsG0380018054.01.T01:intron 20.0%
!! TTAAACCGAAAATTATATGA+TGG + Chr3:103790009-103790028 MsG0380018054.01.T01:intron 20.0%
!!! AAATCTTACAATGTTGTTTT+CGG - Chr3:103791000-103791019 None:intergenic 20.0%
!!! AGAGAATAAAAAAGTGTAAA+GGG - Chr3:103789969-103789988 None:intergenic 20.0%
!!! ATTTATGGCTTTATATATTC+TGG + Chr3:103790679-103790698 MsG0380018054.01.T01:CDS 20.0%
!!! TAATAAGTTTTGAAGAAACT+CGG - Chr3:103788361-103788380 None:intergenic 20.0%
!!! TACAAAATTTTATAACTTCC+AGG + Chr3:103789042-103789061 MsG0380018054.01.T01:intron 20.0%
!!! TACAACCATCATATAATTTT+CGG - Chr3:103790017-103790036 None:intergenic 20.0%
! AAACCATTGAACAAAGAAAT+GGG - Chr3:103788984-103789003 None:intergenic 25.0%
! AAAGAAATGGGATCATTTAT+AGG - Chr3:103788972-103788991 None:intergenic 25.0%
! AAATCAAAGATGCAAAGTAT+AGG - Chr3:103790758-103790777 None:intergenic 25.0%
! AATACTTGAATCATATCAGT+TGG - Chr3:103790495-103790514 None:intergenic 25.0%
! ACAGTATTGTAGAAAAGTAA+AGG - Chr3:103790325-103790344 None:intergenic 25.0%
! ATCTATCTATCAAAGAAGAA+TGG + Chr3:103787789-103787808 MsG0380018054.01.T01:five_prime_UTR 25.0%
! GAAATTCAAAACCCTTAAAA+CGG - Chr3:103788718-103788737 None:intergenic 25.0%
! TAAACCATTGAACAAAGAAA+TGG - Chr3:103788985-103789004 None:intergenic 25.0%
! TCTAAATAAATCTCTGTACA+CGG + Chr3:103790616-103790635 MsG0380018054.01.T01:CDS 25.0%
! TGTGACAATAGAAAATTATC+TGG + Chr3:103790716-103790735 MsG0380018054.01.T01:intron 25.0%
! TTATAAATGACAAGGATTGA+GGG + Chr3:103789251-103789270 MsG0380018054.01.T01:intron 25.0%
! TTGTTATCTACTATGCATAA+TGG + Chr3:103789804-103789823 MsG0380018054.01.T01:intron 25.0%
!! AAACAGGCTTTTTGTATAAA+TGG - Chr3:103788932-103788951 None:intergenic 25.0%
!! CTTATGATATTTGTCGATTA+TGG + Chr3:103787988-103788007 MsG0380018054.01.T01:five_prime_UTR 25.0%
!! GAGAATAAAAAAGTGTAAAG+GGG - Chr3:103789968-103789987 None:intergenic 25.0%
!! GAGAGAATAAAAAAGTGTAA+AGG - Chr3:103789970-103789989 None:intergenic 25.0%
!! GTATTTTCTCTTCATTATCA+TGG + Chr3:103790510-103790529 MsG0380018054.01.T01:intron 25.0%
!!! AATCTTACAATGTTGTTTTC+GGG - Chr3:103790999-103791018 None:intergenic 25.0%
!!! ATCAGTTGGTAACTTATATT+AGG - Chr3:103790481-103790500 None:intergenic 25.0%
!!! TTACTTTTCTACAATACTGT+AGG + Chr3:103790325-103790344 MsG0380018054.01.T01:intron 25.0%
!!! TTGGTTTTTCAGTTTCATTT+TGG + Chr3:103790375-103790394 MsG0380018054.01.T01:CDS 25.0%
!!! TTTCTACTTTTGAAAAGACT+GGG + Chr3:103789738-103789757 MsG0380018054.01.T01:intron 25.0%
!!! TTTTCTACTTTTGAAAAGAC+TGG + Chr3:103789737-103789756 MsG0380018054.01.T01:intron 25.0%
!!! TTTTTTTGCTTTTTGTTTCC+AGG + Chr3:103790587-103790606 MsG0380018054.01.T01:intron 25.0%
AAAATCTGCAACTTATTCAG+TGG - Chr3:103789927-103789946 None:intergenic 30.0%
AAACAAATATGAAGTCAGTC+AGG - Chr3:103789786-103789805 None:intergenic 30.0%
AAATCCTTGAATTGCAATCA+CGG - Chr3:103790964-103790983 None:intergenic 30.0%
AACTTATATTAGGTTCTCCA+CGG - Chr3:103790471-103790490 None:intergenic 30.0%
ACAGAATAAATAGCTAAGTG+GGG - Chr3:103788627-103788646 None:intergenic 30.0%
ACTACTAACTAACTAACCAA+TGG - Chr3:103788387-103788406 None:intergenic 30.0%
AGTTGGAATGATCTAAGTAA+TGG - Chr3:103788170-103788189 None:intergenic 30.0%
ATATAGACCATACAACAATC+CGG - Chr3:103788509-103788528 None:intergenic 30.0%
ATATTGTTGGCAATTTACTC+CGG + Chr3:103788487-103788506 MsG0380018054.01.T01:five_prime_UTR 30.0%
ATGATTGATCGCTATATTCT+TGG + Chr3:103788900-103788919 MsG0380018054.01.T01:CDS 30.0%
CTACTAACTAACTAACCAAT+GGG - Chr3:103788386-103788405 None:intergenic 30.0%
GACAGAATAAATAGCTAAGT+GGG - Chr3:103788628-103788647 None:intergenic 30.0%
GATTTAAGCATCAGTCTTTA+AGG + Chr3:103790773-103790792 MsG0380018054.01.T01:intron 30.0%
GATTTATTTAGAGGAATTCC+TGG - Chr3:103790608-103790627 None:intergenic 30.0%
GCATTATTGGACTTCAATAT+GGG + Chr3:103790124-103790143 MsG0380018054.01.T01:CDS 30.0%
GTGTACAGAGATTTATTTAG+AGG - Chr3:103790617-103790636 None:intergenic 30.0%
GTTATAAATGACAAGGATTG+AGG + Chr3:103789250-103789269 MsG0380018054.01.T01:intron 30.0%
TAAAGCCATAAATGTGAAAC+CGG - Chr3:103790672-103790691 None:intergenic 30.0%
TAGTGAATTGAGTGATGAAA+AGG - Chr3:103789379-103789398 None:intergenic 30.0%
TATTAAGCCTAAATCCAACA+AGG - Chr3:103789608-103789627 None:intergenic 30.0%
TCAAAACTTATTACTCCCAT+TGG + Chr3:103788368-103788387 MsG0380018054.01.T01:five_prime_UTR 30.0%
TCATAGAAGAAATGAATGCA+AGG - Chr3:103789847-103789866 None:intergenic 30.0%
TCATTCCAACTCTTTATTCT+TGG + Chr3:103788179-103788198 MsG0380018054.01.T01:five_prime_UTR 30.0%
TGCATTATTGGACTTCAATA+TGG + Chr3:103790123-103790142 MsG0380018054.01.T01:CDS 30.0%
TGTATGCTTTATCTGTTGAT+TGG + Chr3:103790033-103790052 MsG0380018054.01.T01:intron 30.0%
TGTTCTTGTATCTTCAAACT+TGG + Chr3:103790938-103790957 MsG0380018054.01.T01:CDS 30.0%
TTCTCAACACTTAACAAGAT+TGG - Chr3:103789184-103789203 None:intergenic 30.0%
! AAATCACAAGGTCAACATTT+TGG - Chr3:103788793-103788812 None:intergenic 30.0%
! ACCTTAAGATTTCTGAAAAC+AGG - Chr3:103788948-103788967 None:intergenic 30.0%
! ATGATATTTGTCGATTATGG+TGG + Chr3:103787991-103788010 MsG0380018054.01.T01:five_prime_UTR 30.0%
! CTGAATAAGTTGCAGATTTT+TGG + Chr3:103789927-103789946 MsG0380018054.01.T01:intron 30.0%
! GTTTTACAGAGGATTTCTAT+TGG + Chr3:103788283-103788302 MsG0380018054.01.T01:five_prime_UTR 30.0%
! TTAGTTAATTGTTTGTTGGG+AGG - Chr3:103791046-103791065 None:intergenic 30.0%
!! AATAAGTTGCAGATTTTTGG+TGG + Chr3:103789930-103789949 MsG0380018054.01.T01:intron 30.0%
AAAAACCAAGCCAGTGATTT+AGG - Chr3:103790364-103790383 None:intergenic 35.0%
AAAATGCCTTCTGGATCAAA+AGG - Chr3:103789127-103789146 None:intergenic 35.0%
AACACAAACCTATTAACGCA+AGG - Chr3:103790414-103790433 None:intergenic 35.0%
AAGAGGAGATCTTTAGCAAT+AGG + Chr3:103789282-103789301 MsG0380018054.01.T01:intron 35.0%
AATACAACAAACCAAGCTAC+AGG - Chr3:103790204-103790223 None:intergenic 35.0%
AATGTTTACACCGTGAGAAT+AGG + Chr3:103788592-103788611 MsG0380018054.01.T01:intron 35.0%
ACCAAGTTTCACTTTGTAGA+TGG + Chr3:103788739-103788758 MsG0380018054.01.T01:intron 35.0%
AGAATAAATAGCTAAGTGGG+GGG - Chr3:103788625-103788644 None:intergenic 35.0%
AGAGTACATACAAAACAGAG+AGG - Chr3:103787899-103787918 None:intergenic 35.0%
ATCTACTATGCATAATGGTG+CGG + Chr3:103789809-103789828 MsG0380018054.01.T01:intron 35.0%
ATGGTCTATATGTTCCAGAT+TGG + Chr3:103788518-103788537 MsG0380018054.01.T01:five_prime_UTR 35.0%
ATTGCTAAAGATCTCCTCTT+TGG - Chr3:103789282-103789301 None:intergenic 35.0%
ATTTACTCCGGATTGTTGTA+TGG + Chr3:103788499-103788518 MsG0380018054.01.T01:five_prime_UTR 35.0%
ATTTATAACGCTGTCCAGAT+AGG - Chr3:103789239-103789258 None:intergenic 35.0%
CAACACTTAACAAGATTGGA+GGG - Chr3:103789180-103789199 None:intergenic 35.0%
CAGAATAAATAGCTAAGTGG+GGG - Chr3:103788626-103788645 None:intergenic 35.0%
CATAGAGAATAATAGCATGC+TGG + Chr3:103789453-103789472 MsG0380018054.01.T01:intron 35.0%
CCAAGTTTCACTTTGTAGAT+GGG + Chr3:103788740-103788759 MsG0380018054.01.T01:intron 35.0%
GAAAATAACCACCTTGAAGA+AGG - Chr3:103788208-103788227 None:intergenic 35.0%
GAGATCACTGTGTTAGAAAT+AGG - Chr3:103789434-103789453 None:intergenic 35.0%
GATCCCATTTCTTTGTTCAA+TGG + Chr3:103788978-103788997 MsG0380018054.01.T01:intron 35.0%
GGACAGAATAAATAGCTAAG+TGG - Chr3:103788629-103788648 None:intergenic 35.0%
GTAAACTCCTTGTTGGATTT+AGG + Chr3:103789598-103789617 MsG0380018054.01.T01:intron 35.0%
GTTCAAACTATACGCTTCTT+TGG + Chr3:103788259-103788278 MsG0380018054.01.T01:five_prime_UTR 35.0%
TAACGGAATACTTTGCTCAA+AGG - Chr3:103789494-103789513 None:intergenic 35.0%
TAATAACTTCACTGAACTCG+AGG + Chr3:103789626-103789645 MsG0380018054.01.T01:intron 35.0%
TATTCTCACGGTGTAAACAT+TGG - Chr3:103788593-103788612 None:intergenic 35.0%
TCAACACTTAACAAGATTGG+AGG - Chr3:103789181-103789200 None:intergenic 35.0%
TTATTGAGGACAATGCAACA+AGG + Chr3:103789518-103789537 MsG0380018054.01.T01:intron 35.0%
TTCCAAGTAGTAGATTGTGT+TGG - Chr3:103788146-103788165 None:intergenic 35.0%
TTTGAAAGTTGTCTCCTATC+TGG + Chr3:103789222-103789241 MsG0380018054.01.T01:intron 35.0%
TTTGAAGAAACTCGGATGTT+TGG - Chr3:103788353-103788372 None:intergenic 35.0%
! ATGCTTTATCTGTTGATTGG+TGG + Chr3:103790036-103790055 MsG0380018054.01.T01:intron 35.0%
! GCCTGTTTTCAGAAATCTTA+AGG + Chr3:103788944-103788963 MsG0380018054.01.T01:CDS 35.0%
! GTTTTTACTGAAACTGTCCA+CGG + Chr3:103790431-103790450 MsG0380018054.01.T01:intron 35.0%
! TAATTTTTGTTCCACTCTGC+AGG + Chr3:103790847-103790866 MsG0380018054.01.T01:intron 35.0%
! TTTTTACTGAAACTGTCCAC+GGG + Chr3:103790432-103790451 MsG0380018054.01.T01:intron 35.0%
!! CTTCAAGGTGGTTATTTTCA+CGG + Chr3:103788209-103788228 MsG0380018054.01.T01:five_prime_UTR 35.0%
!! GTTTCTAGCAGCAATATTGT+TGG + Chr3:103788474-103788493 MsG0380018054.01.T01:five_prime_UTR 35.0%
!! TGCTGTTGCTTATGTTTTCA+TGG + Chr3:103791019-103791038 MsG0380018054.01.T01:CDS 35.0%
!!! TACAATGTTGTTTTCGGGTT+TGG - Chr3:103790994-103791013 None:intergenic 35.0%
!!! TCAGTTTCATTTTGGCTCTA+GGG + Chr3:103790383-103790402 MsG0380018054.01.T01:CDS 35.0%
!!! TTCAGTTTCATTTTGGCTCT+AGG + Chr3:103790382-103790401 MsG0380018054.01.T01:CDS 35.0%
!!! TTGATCCAGAAGGCATTTTA+AGG + Chr3:103789128-103789147 MsG0380018054.01.T01:CDS 35.0%
AAAATGTGTGTGAGCTGAGA+AGG - Chr3:103788447-103788466 None:intergenic 40.0%
AAAGTAAAGGTCAGCTGAGT+CGG - Chr3:103790312-103790331 None:intergenic 40.0%
AACGTCAAGACCATATGTGA+AGG - Chr3:103788242-103788261 None:intergenic 40.0%
AAGAAACTCGGATGTTTGGA+TGG - Chr3:103788349-103788368 None:intergenic 40.0%
AATCATTCCAGCAGAATTGC+AGG - Chr3:103788886-103788905 None:intergenic 40.0%
ACAATACTGTAGGACCACAA+AGG + Chr3:103790335-103790354 MsG0380018054.01.T01:intron 40.0%
ACATGATCTCACCTCTAAGT+TGG - Chr3:103790160-103790179 None:intergenic 40.0%
ACCACAAGGAAGAGAAAGAA+AGG - Chr3:103788081-103788100 None:intergenic 40.0%
ACCCTTAAAACGGAGATCTT+AGG - Chr3:103788708-103788727 None:intergenic 40.0%
ACTCTGCAGGTAGATGTTTA+CGG + Chr3:103790860-103790879 MsG0380018054.01.T01:intron 40.0%
AGAAACAAAAGTTGCAGCAC+AGG - Chr3:103788650-103788669 None:intergenic 40.0%
AGAAACTCGGATGTTTGGAT+GGG - Chr3:103788348-103788367 None:intergenic 40.0%
AGCCAACACAATCTACTACT+TGG + Chr3:103788141-103788160 MsG0380018054.01.T01:five_prime_UTR 40.0%
AGCTTCCGGTTTCACATTTA+TGG + Chr3:103790664-103790683 MsG0380018054.01.T01:CDS 40.0%
AGTGCCAAACTATGTTACAG+AGG - Chr3:103790265-103790284 None:intergenic 40.0%
ATGGAGCATGAGAAATGATG+GGG - Chr3:103788026-103788045 None:intergenic 40.0%
ATTCTTGGCATCCTTCTTCA+AGG + Chr3:103788194-103788213 MsG0380018054.01.T01:five_prime_UTR 40.0%
ATTTCTCATGCTCCATGGAA+TGG + Chr3:103788030-103788049 MsG0380018054.01.T01:five_prime_UTR 40.0%
CAATACTGTAGGACCACAAA+GGG + Chr3:103790336-103790355 MsG0380018054.01.T01:intron 40.0%
CATGGAGCATGAGAAATGAT+GGG - Chr3:103788027-103788046 None:intergenic 40.0%
CCCATCTACAAAGTGAAACT+TGG - Chr3:103788743-103788762 None:intergenic 40.0%
CTTCCCTCTGTAACATAGTT+TGG + Chr3:103790258-103790277 MsG0380018054.01.T01:intron 40.0%
GCTGCAGTTTCATGCATTAT+TGG + Chr3:103790111-103790130 MsG0380018054.01.T01:CDS 40.0%
GGACAGCGTTATAAATGACA+AGG + Chr3:103789243-103789262 MsG0380018054.01.T01:intron 40.0%
GGATGCCAAGAATAAAGAGT+TGG - Chr3:103788187-103788206 None:intergenic 40.0%
GGTTACCTTAAAATGCCTTC+TGG - Chr3:103789136-103789155 None:intergenic 40.0%
GTGCCAAACTATGTTACAGA+GGG - Chr3:103790264-103790283 None:intergenic 40.0%
GTGTTGAGAAAACACAAGCT+GGG + Chr3:103789194-103789213 MsG0380018054.01.T01:intron 40.0%
GTTGCATTGTCCTCAATAAC+CGG - Chr3:103789517-103789536 None:intergenic 40.0%
TAAACATTGGCGCCTTGAAT+TGG - Chr3:103788580-103788599 None:intergenic 40.0%
TAACGCAGTAAACTCCTTGT+TGG + Chr3:103789591-103789610 MsG0380018054.01.T01:intron 40.0%
TCTTCTTTGCCTCCAATTCA+AGG + Chr3:103788565-103788584 MsG0380018054.01.T01:five_prime_UTR 40.0%
TGAATTGTATGCCTGTAGCT+TGG + Chr3:103790190-103790209 MsG0380018054.01.T01:intron 40.0%
TTGAATTGGAGGCAAAGAAG+AGG - Chr3:103788566-103788585 None:intergenic 40.0%
TTGTCCTCAATAACCGGTAA+CGG - Chr3:103789511-103789530 None:intergenic 40.0%
TTTCAGATAGTTCACCGTCA+TGG + Chr3:103789092-103789111 MsG0380018054.01.T01:CDS 40.0%
TTTCTTACTCGCAGATACAC+TGG + Chr3:103791080-103791099 MsG0380018054.01.T01:CDS 40.0%
! AATAGGCTGAAGTGTCATAG+AGG + Chr3:103789299-103789318 MsG0380018054.01.T01:intron 40.0%
! ACGGTGAACTATCTGAAACT+TGG - Chr3:103789090-103789109 None:intergenic 40.0%
! AGCCTAAGATCTCCGTTTTA+AGG + Chr3:103788703-103788722 MsG0380018054.01.T01:intron 40.0%
! AGTGTTGAGAAAACACAAGC+TGG + Chr3:103789193-103789212 MsG0380018054.01.T01:intron 40.0%
! ATAGGCTGAAGTGTCATAGA+GGG + Chr3:103789300-103789319 MsG0380018054.01.T01:intron 40.0%
! ATGAGAAATGATGGGGAAGA+TGG - Chr3:103788019-103788038 None:intergenic 40.0%
! GCCTAAGATCTCCGTTTTAA+GGG + Chr3:103788704-103788723 MsG0380018054.01.T01:intron 40.0%
! GCTCACACACATTTTTATGC+AGG + Chr3:103788452-103788471 MsG0380018054.01.T01:intron 40.0%
! TATTCCGTTACCGGTTATTG+AGG + Chr3:103789504-103789523 MsG0380018054.01.T01:intron 40.0%
! TGAGCAAAGTATTCCGTTAC+CGG + Chr3:103789495-103789514 MsG0380018054.01.T01:intron 40.0%
AAACGCTGCATGAAGTAGAC+TGG - Chr3:103789157-103789176 None:intergenic 45.0%
AAGGCATGACGAAATCAGCA+AGG - Chr3:103788062-103788081 None:intergenic 45.0%
ACATACAAAACAGAGAGGCC+CGG - Chr3:103787894-103787913 None:intergenic 45.0%
AGGACAATGCAACAAGGTCA+TGG + Chr3:103789524-103789543 MsG0380018054.01.T01:intron 45.0%
AGTGCAAGAGAGATACCACA+AGG - Chr3:103788095-103788114 None:intergenic 45.0%
CAGACGTTTGACAAGTGTGT+TGG + Chr3:103790886-103790905 MsG0380018054.01.T01:CDS 45.0%
CAGGTGAATTGTTCAGTGAG+AGG + Chr3:103788846-103788865 MsG0380018054.01.T01:intron 45.0%
CCATCATTTCTCATGCTCCA+TGG + Chr3:103788025-103788044 MsG0380018054.01.T01:five_prime_UTR 45.0%
CCATGGAGCATGAGAAATGA+TGG - Chr3:103788028-103788047 None:intergenic 45.0%
CGGCATCATTCCTTCACATA+TGG + Chr3:103788229-103788248 MsG0380018054.01.T01:five_prime_UTR 45.0%
CTCTGCAGGTAGATGTTTAC+GGG + Chr3:103790861-103790880 MsG0380018054.01.T01:intron 45.0%
GAGTGCAATATGTCTAGCAC+TGG + Chr3:103789064-103789083 MsG0380018054.01.T01:CDS 45.0%
GCACATTCTTGCCAACTTAG+AGG + Chr3:103790146-103790165 MsG0380018054.01.T01:CDS 45.0%
GCCTTTCTTTCTCTTCCTTG+TGG + Chr3:103788077-103788096 MsG0380018054.01.T01:five_prime_UTR 45.0%
GTAAACATCTACCTGCAGAG+TGG - Chr3:103790861-103790880 None:intergenic 45.0%
GTACTCTCTCTTTCTTCCTC+TGG + Chr3:103787912-103787931 MsG0380018054.01.T01:intron 45.0%
GTTGAACCTTTCCCAACACA+GGG - Chr3:103789654-103789673 None:intergenic 45.0%
GTTTGACAAGTGTGTTGGAG+TGG + Chr3:103790891-103790910 MsG0380018054.01.T01:CDS 45.0%
TGCTAGACATATTGCACTCC+TGG - Chr3:103789063-103789082 None:intergenic 45.0%
TGTTCAGTGAGAGGTGATCT+TGG + Chr3:103788855-103788874 MsG0380018054.01.T01:five_prime_UTR 45.0%
TTGGCCGTGATTGCAATTCA+AGG + Chr3:103790957-103790976 MsG0380018054.01.T01:CDS 45.0%
! GCTTCTTTGGCGTTTTACAG+AGG + Chr3:103788272-103788291 MsG0380018054.01.T01:five_prime_UTR 45.0%
!! ATGATAGTAGCGTTGACCAG+AGG - Chr3:103787931-103787950 None:intergenic 45.0%
!!! GTTTCATTTTGGCTCTAGGG+TGG + Chr3:103790386-103790405 MsG0380018054.01.T01:CDS 45.0%
ACATTGGCGCCTTGAATTGG+AGG - Chr3:103788577-103788596 None:intergenic 50.0%
AGACATCAACGGAGGCAACT+CGG - Chr3:103787870-103787889 None:intergenic 50.0%
AGTGATTTAGGCGCCCTTTG+TGG - Chr3:103790352-103790371 None:intergenic 50.0%
ATGTTTGGATGGGAGTCGGA+AGG - Chr3:103788338-103788357 None:intergenic 50.0%
ATTCCAGCAGAATTGCAGGC+AGG - Chr3:103788882-103788901 None:intergenic 50.0%
CACTGCGTCCTTTGATTGTG+TGG + Chr3:103790281-103790300 MsG0380018054.01.T01:intron 50.0%
CGGCTGTACCACACAATCAA+AGG - Chr3:103790292-103790311 None:intergenic 50.0%
CTTGGCATCCTTCTTCAAGG+TGG + Chr3:103788197-103788216 MsG0380018054.01.T01:five_prime_UTR 50.0%
GACAAGTGTGTTGGAGTGGA+TGG + Chr3:103790895-103790914 MsG0380018054.01.T01:CDS 50.0%
GATTGAGGGAGAGTCCAAAG+AGG + Chr3:103789265-103789284 MsG0380018054.01.T01:intron 50.0%
GCAAGGTGAAGACCATTCCA+TGG - Chr3:103788045-103788064 None:intergenic 50.0%
GGGAGTGAAGCCTATTCTCA+CGG - Chr3:103788605-103788624 None:intergenic 50.0%
GGGTGGTTCCTTGCGTTAAT+AGG + Chr3:103790403-103790422 MsG0380018054.01.T01:CDS 50.0%
GGTTGAACCTTTCCCAACAC+AGG - Chr3:103789655-103789674 None:intergenic 50.0%
TCGGATGTTTGGATGGGAGT+CGG - Chr3:103788342-103788361 None:intergenic 50.0%
TGTTTGGATGGGAGTCGGAA+GGG - Chr3:103788337-103788356 None:intergenic 50.0%
TTGCCTCCGTTGATGTCTTC+CGG + Chr3:103787872-103787891 MsG0380018054.01.T01:five_prime_UTR 50.0%
! AAAGGAGCGTGACACCATGA+CGG - Chr3:103789109-103789128 None:intergenic 50.0%
! CACGCTCCTTTTGATCCAGA+AGG + Chr3:103789118-103789137 MsG0380018054.01.T01:CDS 50.0%
! GATGCATCGAAGTGCCAATC+TGG - Chr3:103788535-103788554 None:intergenic 50.0%
!! ACAAAGGGCGCCTAAATCAC+TGG + Chr3:103790351-103790370 MsG0380018054.01.T01:CDS 50.0%
ACATCAACGGAGGCAACTCG+GGG - Chr3:103787868-103787887 None:intergenic 55.0%
AGAGGCCCGGAAGACATCAA+CGG - Chr3:103787881-103787900 None:intergenic 55.0%
CGGACTGATGAATACACCCG+TGG - Chr3:103790451-103790470 None:intergenic 55.0%
CGGGTGTATTCATCAGTCCG+TGG + Chr3:103790451-103790470 MsG0380018054.01.T01:intron 55.0%
GACATCAACGGAGGCAACTC+GGG - Chr3:103787869-103787888 None:intergenic 55.0%
TGCCTCCGTTGATGTCTTCC+GGG + Chr3:103787873-103787892 MsG0380018054.01.T01:five_prime_UTR 55.0%
! AACTCGAGGTGCCCTGTGTT+GGG + Chr3:103789640-103789659 MsG0380018054.01.T01:intron 55.0%
!! CTGCTTAGCTCTGCAGCTTC+CGG + Chr3:103790650-103790669 MsG0380018054.01.T01:CDS 55.0%
CATCAACGGAGGCAACTCGG+GGG - Chr3:103787867-103787886 None:intergenic 60.0%
GGACCTGCCTGCAATTCTGC+TGG + Chr3:103788876-103788895 MsG0380018054.01.T01:five_prime_UTR 60.0%
TTCAGCAGCAGCAACGCTCG+TGG - Chr3:103787820-103787839 None:intergenic 60.0%
! GAACTCGAGGTGCCCTGTGT+TGG + Chr3:103789639-103789658 MsG0380018054.01.T01:intron 60.0%
! GAGGTGCCCTGTGTTGGGAA+AGG + Chr3:103789645-103789664 MsG0380018054.01.T01:intron 60.0%
! GGGCGCCTAAATCACTGGCT+TGG + Chr3:103790356-103790375 MsG0380018054.01.T01:CDS 60.0%
GGCCCGGAAGACATCAACGG+AGG - Chr3:103787878-103787897 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 103787749 103791129 103787749 ID=MsG0380018054.01;Name=MsG0380018054.01
Chr3 mRNA 103787749 103791129 103787749 ID=MsG0380018054.01.T01;Parent=MsG0380018054.01;Name=MsG0380018054.01.T01;_AED=0.50;_eAED=0.55;_QI=742|0.87|0.77|1|0.5|0.44|9|0|221
Chr3 exon 103787749 103787907 103787749 ID=MsG0380018054.01.T01:exon:30853;Parent=MsG0380018054.01.T01
Chr3 exon 103787988 103788389 103787988 ID=MsG0380018054.01.T01:exon:30854;Parent=MsG0380018054.01.T01
Chr3 exon 103788474 103788603 103788474 ID=MsG0380018054.01.T01:exon:30855;Parent=MsG0380018054.01.T01
Chr3 exon 103788849 103788965 103788849 ID=MsG0380018054.01.T01:exon:30856;Parent=MsG0380018054.01.T01
Chr3 exon 103789064 103789149 103789064 ID=MsG0380018054.01.T01:exon:30857;Parent=MsG0380018054.01.T01
Chr3 exon 103790101 103790183 103790101 ID=MsG0380018054.01.T01:exon:30858;Parent=MsG0380018054.01.T01
Chr3 exon 103790347 103790424 103790347 ID=MsG0380018054.01.T01:exon:30859;Parent=MsG0380018054.01.T01
Chr3 exon 103790609 103790700 103790609 ID=MsG0380018054.01.T01:exon:30860;Parent=MsG0380018054.01.T01
Chr3 exon 103790869 103791129 103790869 ID=MsG0380018054.01.T01:exon:30861;Parent=MsG0380018054.01.T01
Chr3 five_prime_UTR 103787749 103787907 103787749 ID=MsG0380018054.01.T01:five_prime_utr;Parent=MsG0380018054.01.T01
Chr3 five_prime_UTR 103787988 103788389 103787988 ID=MsG0380018054.01.T01:five_prime_utr;Parent=MsG0380018054.01.T01
Chr3 five_prime_UTR 103788474 103788603 103788474 ID=MsG0380018054.01.T01:five_prime_utr;Parent=MsG0380018054.01.T01
Chr3 five_prime_UTR 103788849 103788899 103788849 ID=MsG0380018054.01.T01:five_prime_utr;Parent=MsG0380018054.01.T01
Chr3 CDS 103788900 103788965 103788900 ID=MsG0380018054.01.T01:cds;Parent=MsG0380018054.01.T01
Chr3 CDS 103789064 103789149 103789064 ID=MsG0380018054.01.T01:cds;Parent=MsG0380018054.01.T01
Chr3 CDS 103790101 103790183 103790101 ID=MsG0380018054.01.T01:cds;Parent=MsG0380018054.01.T01
Chr3 CDS 103790347 103790424 103790347 ID=MsG0380018054.01.T01:cds;Parent=MsG0380018054.01.T01
Chr3 CDS 103790609 103790700 103790609 ID=MsG0380018054.01.T01:cds;Parent=MsG0380018054.01.T01
Chr3 CDS 103790869 103791129 103790869 ID=MsG0380018054.01.T01:cds;Parent=MsG0380018054.01.T01
Gene Sequence

>MsG0380018054.01.T01

ATGATTGATCGCTATATTCTTGGTCTTGACCATTTATACAAAAAGCCTGTTTTCAGAAATCTTAAGGAGTGCAATATGTCTAGCACTGGCCAAGTTTCAGATAGTTCACCGTCATGGTGTCACGCTCCTTTTGATCCAGAAGGCATTTTAAGCTCTATAACAGCTGCAGTTTCATGCATTATTGGACTTCAATATGGGCACATTCTTGCCAACTTAGAGGTGAGATCATGTATGAGACCACAAAGGGCGCCTAAATCACTGGCTTGGTTTTTCAGTTTCATTTTGGCTCTAGGGTGGTTCCTTGCGTTAATAGGAATTCCTCTAAATAAATCTCTGTACACGGTCAGTTATATGCTGCTTAGCTCTGCAGCTTCCGGTTTCACATTTATGGCTTTATATATTCTGGTAGATGTTTACGGGTACAGACGTTTGACAAGTGTGTTGGAGTGGATGGAAAACACTCTTGAGTATATTTGTTCTTGTATCTTCAAACTTGGCCGTGATTGCAATTCAAGGATTTTATTTGACCAAACCCGAAAACAACATTGTAAGATTTGCTGTTGCTTATGTTTTCATGGTCCTCCCAACAAACAATTAACTAATTGTTTGTTGTACTTTTCTTACTCGCAGATACACTGGATAGTCGCAAGATTTCAACACAAATAA
Protein sequence

>MsG0380018054.01.T01

MIDRYILGLDHLYKKPVFRNLKECNMSSTGQVSDSSPSWCHAPFDPEGILSSITAAVSCIIGLQYGHILANLEVRSCMRPQRAPKSLAWFFSFILALGWFLALIGIPLNKSLYTVSYMLLSSAASGFTFMALYILVDVYGYRRLTSVLEWMENTLEYICSCIFKLGRDCNSRILFDQTRKQHCKICCCLCFHGPPNKQLTNCLLYFSYSQIHWIVARFQHK*